Warning: Permanently added '2620:52:6:1161:dead:beef:cafe:c103' (ED25519) to the list of known hosts.

You can reproduce this build on your computer by running:

  sudo dnf install copr-rpmbuild
  /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/11058254-fedora-rawhide-ppc64le --chroot fedora-rawhide-ppc64le


Version: 1.10
PID: 46657
Logging PID: 46659
Task:
{'allow_user_ssh': False,
 'appstream': False,
 'background': True,
 'build_id': 11058254,
 'buildroot_pkgs': ['fedora-clang-default-cc'],
 'chroot': 'fedora-rawhide-ppc64le',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': 'b874f5dfc7e091bd970c31ae0792ef78c3f9660c',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/@fedora-llvm-team/clang-monthly-fedora-rebuild/bcftools',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'bcftools',
 'package_version': '1.24-2',
 'project_dirname': 'clang-monthly-fedora-rebuild',
 'project_name': 'clang-monthly-fedora-rebuild',
 'project_owner': '@fedora-llvm-team',
 'repo_priority': None,
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/@fedora-llvm-team/clang-monthly-fedora-rebuild/fedora-rawhide-ppc64le/',
            'id': 'copr_base',
            'name': 'Copr repository',
            'priority': None,
            'repo_gpgcheck': False},
           {'baseurl': 'https://download.copr.fedorainfracloud.org/results/tstellar/fedora-clang-default-cc/fedora-rawhide-ppc64le/',
            'id': 'copr_tstellar_fedora_clang_default_cc',
            'name': 'Additional repo copr_tstellar_fedora_clang_default_cc',
            'repo_gpgcheck': False},
           {'baseurl': 'https://download.copr.fedorainfracloud.org/results/@fedora-llvm-team/llvm-snapshots-big-merge-20260928/fedora-rawhide-ppc64le/',
            'id': 'copr_fedora_llvm_team_llvm_snapshots_big_merge_20260928',
            'module_hotfixes': True,
            'name': 'Additional repo copr_fedora_llvm_team_llvm_snapshots_big_merge_20260928',
            'repo_gpgcheck': False}],
 'sandbox': '@fedora-llvm-team/clang-monthly-fedora-rebuild--kkleine',
 'source_json': {},
 'source_type': None,
 'ssh_public_keys': None,
 'storage': 0,
 'submitter': 'kkleine',
 'tags': [],
 'task_id': '11058254-fedora-rawhide-ppc64le',
 'timeout': 90000,
 'uses_devel_repo': False,
 'with_opts': ['toolchain_clang', 'clang_lto'],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/@fedora-llvm-team/clang-monthly-fedora-rebuild/bcftools /var/lib/copr-rpmbuild/workspace/workdir-qlbu6ir7/bcftools --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/@fedora-llvm-team/clang-monthly-fedora-rebuild/bcftools', '/var/lib/copr-rpmbuild/workspace/workdir-qlbu6ir7/bcftools', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-qlbu6ir7/bcftools'...

Running: git checkout b874f5dfc7e091bd970c31ae0792ef78c3f9660c --

cmd: ['git', 'checkout', 'b874f5dfc7e091bd970c31ae0792ef78c3f9660c', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-qlbu6ir7/bcftools
rc: 0
stdout: 
stderr: Note: switching to 'b874f5dfc7e091bd970c31ae0792ef78c3f9660c'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at b874f5d automatic import of bcftools

Running: dist-git-client sources

cmd: ['dist-git-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-qlbu6ir7/bcftools
rc: 0
stdout: 
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading bcftools-1.24.tar.bz2
INFO: Reading stdout from command: curl --help all
INFO: Calling: curl -H Pragma: -H 'Accept-Encoding: identity' -o bcftools-1.24.tar.bz2 --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/@fedora-llvm-team/clang-monthly-fedora-rebuild/bcftools/bcftools-1.24.tar.bz2/md5/f2e02ae16e0a9a2f8a3e2408c6bcee7c/bcftools-1.24.tar.bz2
  % Total    % Received % Xferd  Average Speed  Time    Time    Time   Current
                                 Dload  Upload  Total   Spent   Left   Speed
100  7.88M 100  7.88M   0      0 36.71M      0                              0
INFO: Reading stdout from command: md5sum bcftools-1.24.tar.bz2

tail: /var/lib/copr-rpmbuild/main.log: file truncated
Running (timeout=90000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-qlbu6ir7/bcftools/bcftools.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-qlbu6ir7/bcftools --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1790842179.854768 -r /var/lib/copr-rpmbuild/results/configs/child.cfg --with toolchain_clang --with clang_lto
INFO: mock.py version 6.8 starting (python version = 3.14.5, NVR = mock-6.8-1.fc44), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-qlbu6ir7/bcftools/bcftools.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-qlbu6ir7/bcftools --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1790842179.854768 -r /var/lib/copr-rpmbuild/results/configs/child.cfg --with toolchain_clang --with clang_lto
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-qlbu6ir7/bcftools/bcftools.spec)  Config(fedora-rawhide-ppc64le)
Start: clean chroot
Finish: clean chroot
Mock Version: 6.8
INFO: Mock Version: 6.8
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-bootstrap-1790842179.854768/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Guessed host environment type: unknown
INFO: Using container image: registry.fedoraproject.org/fedora:rawhide
INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide
INFO: Tagging container image as mock-bootstrap-ca008618-5f94-4af5-842f-8053dfaf4d0b
INFO: Checking that 253898a87893e0bedd04d9623e9f747d957de38901d55c40767b8def93e10597 image matches host's architecture
INFO: Copy content of container 253898a87893e0bedd04d9623e9f747d957de38901d55c40767b8def93e10597 to /var/lib/mock/fedora-rawhide-ppc64le-bootstrap-1790842179.854768/root
INFO: mounting 253898a87893e0bedd04d9623e9f747d957de38901d55c40767b8def93e10597 with podman image mount
INFO: image 253898a87893e0bedd04d9623e9f747d957de38901d55c40767b8def93e10597 as /var/lib/containers/storage/overlay/82ba772dc5d2439288e0ac1f8949b8b5ca8b60d4f4bed12b5a9cb1800b61f433/merged
INFO: umounting image 253898a87893e0bedd04d9623e9f747d957de38901d55c40767b8def93e10597 (/var/lib/containers/storage/overlay/82ba772dc5d2439288e0ac1f8949b8b5ca8b60d4f4bed12b5a9cb1800b61f433/merged) with podman image umount
INFO: Removing image mock-bootstrap-ca008618-5f94-4af5-842f-8053dfaf4d0b
INFO: Package manager dnf5 detected and used (fallback)
INFO: Not updating bootstrap chroot, bootstrap_image_ready=True
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-1790842179.854768/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf5 detected and used (direct choice)
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-6.1.0-1.fc46.ppc64le
  rpm-sequoia-1.10.3-1.fc46.ppc64le
  dnf5-5.4.6.0-1.fc46.ppc64le
  dnf5-plugins-5.4.6.0-1.fc46.ppc64le
Start: installing minimal buildroot with dnf5
Updating and loading repositories:
 fedora                                 100% |  18.0 KiB/s |   6.9 KiB |  00m00s
 Additional repo copr_tstellar_fedora_c 100% |   5.4 KiB/s |   1.5 KiB |  00m00s
 Additional repo copr_fedora_llvm_team_ 100% |   5.8 KiB/s |   1.5 KiB |  00m00s
 Copr repository                        100% |   5.8 KiB/s |   1.5 KiB |  00m00s
Repositories loaded.
Package                            Arch    Version                      Repository      Size
Installing group/module packages:
 bash                              ppc64le 0:5.3.15-2.fc46              copr_base    8.8 MiB
 bzip2                             ppc64le 0:1.0.8-24.fc46              copr_base  170.4 KiB
 coreutils                         ppc64le 0:9.12-1.fc46                fedora      10.2 MiB
 cpio                              ppc64le 0:2.15-10.fc46               copr_base    1.2 MiB
 diffutils                         ppc64le 0:3.12-6.fc46                copr_base    1.7 MiB
 fedora-release-common             noarch  0:46-0.1                     fedora       4.6 KiB
 findutils                         ppc64le 1:4.11.0-2.fc46              copr_base    2.1 MiB
 gawk                              ppc64le 0:5.4.1-1.fc46               copr_base    3.1 MiB
 glibc-minimal-langpack            ppc64le 0:2.44.9000-2.fc46           fedora       0.0   B
 grep                              ppc64le 0:3.12-4.fc46                copr_base    1.0 MiB
 gzip                              ppc64le 0:1.14-4.fc46                copr_base  437.5 KiB
 info                              ppc64le 0:7.3-3.fc46                 copr_base  487.5 KiB
 patch                             ppc64le 0:2.8-5.fc46                 copr_base  263.0 KiB
 redhat-rpm-config                 noarch  0:345-4.fc46                 fedora     184.2 KiB
 rpm-build                         ppc64le 0:6.1.0-1.fc46               fedora     679.8 KiB
 sed                               ppc64le 0:4.10-2.fc45                fedora     942.3 KiB
 shadow-utils                      ppc64le 2:4.20.0-1.fc46              copr_base    4.8 MiB
 tar                               ppc64le 2:1.35-9.fc45                fedora       3.1 MiB
 unzip                             ppc64le 0:6.0-71.fc45                fedora     533.4 KiB
 util-linux                        ppc64le 0:2.42.4-2.fc46              fedora       7.0 MiB
 which                             ppc64le 0:2.25-2.fc46                copr_base  122.9 KiB
 xz                                ppc64le 1:5.8.4-1.fc46               fedora       1.5 MiB
Installing dependencies:
 R-srpm-macros                     noarch  0:1.3.7-3.fc45               fedora       3.5 KiB
 add-determinism                   ppc64le 0:0.7.3-3.fc45               fedora       2.3 MiB
 alternatives                      ppc64le 0:1.33-6.fc46                copr_base   89.7 KiB
 ansible-srpm-macros               noarch  0:1-22.fc45                  fedora      35.7 KiB
 audit-libs                        ppc64le 0:4.2.1-2.fc45               fedora     550.2 KiB
 binutils                          ppc64le 0:2.47.50-11.fc46            fedora      28.1 MiB
 build-reproducibility-srpm-macros noarch  0:0.7.3-3.fc45               fedora       1.2 KiB
 bzip2-libs                        ppc64le 0:1.0.8-24.fc46              copr_base  136.2 KiB
 ca-certificates                   noarch  0:2026.2.90_v9.0.317-1.fc46  fedora       2.6 MiB
 cmake-srpm-macros                 noarch  0:4.3.0-5.fc45               fedora     524.0   B
 coreutils-common                  ppc64le 0:9.12-1.fc46                fedora      11.5 MiB
 crypto-policies                   noarch  0:20260713-2.gitc42da77.fc45 fedora     134.3 KiB
 curl                              ppc64le 0:8.23.0~rc2-1.fc46          fedora     525.5 KiB
 cyrus-sasl-lib                    ppc64le 0:2.1.28-37.fc45             fedora       2.9 MiB
 debugedit                         ppc64le 0:5.3-3.fc46                 copr_base  384.0 KiB
 dwz                               ppc64le 0:0.17-3.fc45                fedora     386.6 KiB
 ed                                ppc64le 0:1.22.6-1.fc46              copr_base  222.9 KiB
 efi-srpm-macros                   noarch  0:6-9.fc45                   fedora      40.3 KiB
 elfutils                          ppc64le 0:0.196-1.fc46               fedora       3.4 MiB
 elfutils-debuginfod-client        ppc64le 0:0.196-1.fc46               fedora     143.4 KiB
 elfutils-libelf                   ppc64le 0:0.196-1.fc46               fedora       1.5 MiB
 elfutils-libs                     ppc64le 0:0.196-1.fc46               fedora     874.5 KiB
 erlang-srpm-macros                noarch  0:0.3.11-2.fc45              fedora       1.9 KiB
 fedora-gpg-keys                   noarch  0:46-0.3                     fedora     130.3 KiB
 fedora-release                    noarch  0:46-0.1                     fedora       0.0   B
 fedora-release-identity-basic     noarch  0:46-0.1                     fedora     664.0   B
 fedora-repos                      noarch  0:46-0.3                     fedora       4.9 KiB
 fedora-repos-rawhide              noarch  0:46-0.3                     fedora       2.2 KiB
 file                              ppc64le 0:5.48-3.fc46                fedora     141.8 KiB
 file-libs                         ppc64le 0:5.48-3.fc46                fedora      12.4 MiB
 filesystem                        ppc64le 0:3.18-59.fc45               fedora     112.0   B
 filesystem-srpm-macros            noarch  0:3.18-59.fc45               fedora      38.2 KiB
 fips-provider                     ppc64le 0:1.5.3-1.fc46               fedora       4.7 MiB
 fonts-srpm-macros                 noarch  1:5.0.0-4.fc45               fedora      55.8 KiB
 forge-srpm-macros                 noarch  0:0.4.0-5.fc45               fedora      38.9 KiB
 fpc-srpm-macros                   noarch  0:1.3-17.fc45                fedora     144.0   B
 gap-srpm-macros                   noarch  0:2-3.fc45                   fedora       2.1 KiB
 gdb-minimal                       ppc64le 0:17.2-6.fc46                fedora      16.3 MiB
 gdbm-libs                         ppc64le 1:1.23-12.fc46               copr_base  233.4 KiB
 ghc-srpm-macros                   noarch  0:1.10-2.fc45                fedora     792.0   B
 glibc                             ppc64le 0:2.44.9000-2.fc46           fedora      12.1 MiB
 glibc-common                      ppc64le 0:2.44.9000-2.fc46           fedora       1.5 MiB
 glibc-gconv-extra                 ppc64le 0:2.44.9000-2.fc46           fedora      18.5 MiB
 gmp                               ppc64le 1:6.3.0-6.fc45               fedora     786.1 KiB
 gnat-srpm-macros                  noarch  0:7-3.fc45                   fedora       1.0 KiB
 gnome-srpm-macros                 noarch  0:1.0-2.fc45                 fedora       3.5 KiB
 gnulib-l10n                       noarch  0:20241231-4.fc46            copr_base  655.0 KiB
 gnupg2                            ppc64le 0:2.4.9-18.fc46              copr_base    6.9 MiB
 gnupg2-dirmngr                    ppc64le 0:2.4.9-18.fc46              copr_base  903.8 KiB
 gnupg2-gpg-agent                  ppc64le 0:2.4.9-18.fc46              copr_base  977.6 KiB
 gnupg2-gpgconf                    ppc64le 0:2.4.9-18.fc46              copr_base  322.7 KiB
 gnupg2-keyboxd                    ppc64le 0:2.4.9-18.fc46              copr_base  298.2 KiB
 gnupg2-verify                     ppc64le 0:2.4.9-18.fc46              copr_base  495.2 KiB
 gnutls                            ppc64le 0:3.8.13-5.fc46              fedora       4.1 MiB
 go-srpm-macros                    noarch  0:3.8.0-3.fc45               fedora      61.9 KiB
 gpgverify                         noarch  0:2.2-5.fc45                 fedora       8.7 KiB
 ima-evm-utils-libs                ppc64le 0:1.6.2-12.fc46              copr_base   92.2 KiB
 jansson                           ppc64le 0:2.14-5.fc46                copr_base  157.1 KiB
 java-srpm-macros                  noarch  0:1-9.fc45                   fedora     870.0   B
 json-c                            ppc64le 0:0.18-9.fc46                copr_base  138.3 KiB
 kernel-srpm-macros                noarch  0:1.0-30.fc45                fedora       1.9 KiB
 keyutils-libs                     ppc64le 0:1.6.3-8.fc46               copr_base   97.7 KiB
 krb5-libs                         ppc64le 0:1.22.2-9.fc45              fedora       3.0 MiB
 libacl                            ppc64le 0:2.4.0-2.fc45               fedora      67.6 KiB
 libarchive                        ppc64le 0:3.8.9-2.fc46               fedora       1.3 MiB
 libassuan                         ppc64le 0:2.5.7-6.fc46               copr_base  215.9 KiB
 libattr                           ppc64le 0:2.6.0-2.fc46               copr_base   67.8 KiB
 libblkid                          ppc64le 0:2.42.4-2.fc46              fedora     354.3 KiB
 libbrotli                         ppc64le 0:1.2.0-6.fc46               copr_base    1.0 MiB
 libcap                            ppc64le 0:2.78-2.fc45                fedora     506.7 KiB
 libcap-ng                         ppc64le 0:0.9.6-1.fc46               fedora     160.2 KiB
 libcbor                           ppc64le 0:0.14.0-3.fc45              fedora     139.5 KiB
 libcom_err                        ppc64le 0:1.47.4-2.fc46              copr_base  110.7 KiB
 libcurl                           ppc64le 0:8.23.0~rc2-1.fc46          fedora       1.4 MiB
 libeconf                          ppc64le 0:0.7.9-4.fc46               copr_base   80.9 KiB
 libevent                          ppc64le 0:2.1.13-1.fc46              fedora       1.3 MiB
 libfdisk                          ppc64le 0:2.42.4-2.fc46              fedora     482.9 KiB
 libffi                            ppc64le 0:3.8.0-1.fc46               fedora     351.4 KiB
 libfido2                          ppc64le 0:1.17.0-5.fc46              copr_base  345.1 KiB
 libfsverity                       ppc64le 0:1.7-4.fc45                 fedora      68.0 KiB
 libgcc                            ppc64le 0:16.2.1-2.fc46.1            fedora     286.4 KiB
 libgcrypt                         ppc64le 0:1.12.4-1.fc46              fedora       1.6 MiB
 libgomp                           ppc64le 0:16.2.1-2.fc46.1            fedora     657.0 KiB
 libgpg-error                      ppc64le 0:1.61-2.fc46                copr_base    1.0 MiB
 libidn2                           ppc64le 0:2.3.8-4.fc46               copr_base  560.1 KiB
 libksba                           ppc64le 0:1.8.1-1.fc46               copr_base  473.0 KiB
 liblastlog2                       ppc64le 0:2.42.4-2.fc46              fedora     137.2 KiB
 libmount                          ppc64le 0:2.42.4-2.fc46              fedora     548.4 KiB
 libnghttp2                        ppc64le 0:1.69.0-6.fc46              fedora     197.8 KiB
 libnghttp3                        ppc64le 0:1.18.0-1.fc46              copr_base  207.7 KiB
 libpkgconf                        ppc64le 0:2.5.1-2.fc46               copr_base  133.7 KiB
 libpsl                            ppc64le 0:0.23.3-1.fc46              fedora     132.1 KiB
 librtas                           ppc64le 0:2.0.7-2.fc45               fedora     320.4 KiB
 libselinux                        ppc64le 0:3.11-5.fc46                fedora     329.1 KiB
 libselinux-utils                  ppc64le 0:3.11-5.fc46                fedora       1.3 MiB
 libsemanage                       ppc64le 0:3.11-4.fc46                fedora     424.1 KiB
 libsepol                          ppc64le 0:3.11-2.fc46                copr_base    1.1 MiB
 libsmartcols                      ppc64le 0:2.42.4-2.fc46              fedora     289.3 KiB
 libssh                            ppc64le 0:0.12.2-1.fc45              fedora     913.5 KiB
 libssh-config                     noarch  0:0.12.2-1.fc45              fedora     277.0   B
 libstdc++                         ppc64le 0:16.2.1-2.fc46.1            fedora       4.1 MiB
 libtasn1                          ppc64le 0:4.21.0-2.fc46              copr_base  220.3 KiB
 libtool-ltdl                      ppc64le 0:2.6.2-1.fc46               fedora      93.8 KiB
 libunistring                      ppc64le 0:1.1-12.fc46                copr_base    1.9 MiB
 libusb1                           ppc64le 0:1.0.30-2.fc45              fedora     243.5 KiB
 libuuid                           ppc64le 0:2.42.4-2.fc46              fedora      69.2 KiB
 libverto                          ppc64le 0:0.3.2-13.fc45              fedora      69.0 KiB
 libxcrypt                         ppc64le 0:4.5.2-4.fc45               fedora     336.9 KiB
 libxml2                           ppc64le 0:2.15.4-1.fc46              fedora       2.1 MiB
 libzstd                           ppc64le 0:1.5.7-6.fc46               copr_base    1.0 MiB
 linkdupes                         ppc64le 0:0.7.3-3.fc45               fedora     838.4 KiB
 lua-libs                          ppc64le 0:5.5.1-2.fc46               fedora     393.9 KiB
 lua-srpm-macros                   noarch  0:1-18.fc45                  fedora       1.3 KiB
 lz4-libs                          ppc64le 0:1.10.0-5.fc46              copr_base  260.8 KiB
 meson-srpm-macros                 noarch  0:1.12.1-2.fc46              fedora       1.7 KiB
 mpfr                              ppc64le 0:4.2.2-4.fc45               fedora     913.4 KiB
 ncurses-base                      noarch  0:6.6-3.fc46                 copr_base  329.7 KiB
 ncurses-libs                      ppc64le 0:6.6-3.fc46                 copr_base    1.4 MiB
 nettle                            ppc64le 0:4.0-5.fc45                 fedora     965.1 KiB
 ngtcp2                            ppc64le 0:1.22.1-3.fc45              fedora     405.1 KiB
 ngtcp2-crypto-ossl                ppc64le 0:1.22.1-3.fc45              fedora      67.1 KiB
 npth                              ppc64le 0:1.8-5.fc46                 copr_base   93.0 KiB
 ocaml-srpm-macros                 noarch  0:11-4.fc45                  fedora       1.9 KiB
 openblas-srpm-macros              noarch  0:2-22.fc45                  fedora     112.0   B
 openldap                          ppc64le 0:2.6.14-1.fc46              fedora     892.8 KiB
 openssl-libs                      ppc64le 1:4.0.2-3.fc46               fedora       7.1 MiB
 p11-kit                           ppc64le 0:0.26.5-1.fc46              copr_base    3.2 MiB
 p11-kit-trust                     ppc64le 0:0.26.5-1.fc46              copr_base  595.9 KiB
 package-notes-srpm-macros         noarch  0:0.20-2.fc45                fedora       1.6 KiB
 pam-libs                          ppc64le 0:1.7.2-4.fc46               copr_base  285.9 KiB
 pcre2                             ppc64le 0:10.47-1.fc46.2             copr_base  905.1 KiB
 pcre2-syntax                      noarch  0:10.47-1.fc46.2             copr_base  281.9 KiB
 perl-srpm-macros                  noarch  0:1-65.fc45                  fedora     861.0   B
 pkgconf                           ppc64le 0:2.5.1-2.fc46               copr_base  114.7 KiB
 pkgconf-m4                        noarch  0:2.5.1-2.fc46               copr_base   14.3 KiB
 pkgconf-pkg-config                ppc64le 0:2.5.1-2.fc46               copr_base  990.0   B
 policycoreutils                   ppc64le 0:3.11-2.fc46                copr_base    1.5 MiB
 popt                              ppc64le 0:1.19-11.fc46               copr_base  144.4 KiB
 publicsuffix-list-dafsa           noarch  0:20260624-2.fc45            fedora      71.3 KiB
 pyproject-srpm-macros             noarch  0:1.23.2-1.fc45              fedora       3.4 KiB
 python-srpm-macros                noarch  0:3.15-2.fc45                fedora      51.6 KiB
 qt5-srpm-macros                   noarch  0:5.15.18-3.fc45             fedora     500.0   B
 qt6-srpm-macros                   noarch  0:6.11.2-1.fc46              fedora     472.0   B
 readline                          ppc64le 0:8.3-6.fc46                 copr_base  691.3 KiB
 redhat-systemd-presets            noarch  0:102-3.fc45                 fedora       1.0 KiB
 redhat-systemd-presets-common     noarch  0:102-3.fc45                 fedora      16.9 KiB
 rpm                               ppc64le 0:6.1.0-1.fc46               fedora       4.2 MiB
 rpm-build-libs                    ppc64le 0:6.1.0-1.fc46               fedora     327.8 KiB
 rpm-libs                          ppc64le 0:6.1.0-1.fc46               fedora       1.4 MiB
 rpm-plugin-selinux                ppc64le 0:6.1.0-1.fc46               fedora      67.8 KiB
 rpm-sequoia                       ppc64le 0:1.10.3-1.fc46              fedora       4.8 MiB
 rpm-sign-libs                     ppc64le 0:6.1.0-1.fc46               fedora      67.5 KiB
 rust-srpm-macros                  noarch  0:28.5-2.fc45                fedora       5.5 KiB
 selinux-policy                    noarch  0:45.19-1.fc46               fedora      32.1 KiB
 selinux-policy-targeted           noarch  0:45.19-1.fc46               fedora      19.0 MiB
 setup                             noarch  0:2.15.1-2.fc45              fedora     725.6 KiB
 sqlite-libs                       ppc64le 0:3.53.4-1.fc45              fedora       2.0 MiB
 systemd-libs                      ppc64le 0:262-1.fc46                 fedora       3.3 MiB
 systemd-standalone-sysusers       ppc64le 0:262-1.fc46                 fedora       1.1 MiB
 tpm2-tss                          ppc64le 0:4.2.0-1.fc46               copr_base    2.4 MiB
 tree-sitter-srpm-macros           noarch  0:0.4.6-2.fc45               fedora       8.6 KiB
 util-linux-core                   ppc64le 0:2.42.4-2.fc46              fedora       2.7 MiB
 xxhash-libs                       ppc64le 0:0.8.4-1.fc46               fedora      85.4 KiB
 xz-libs                           ppc64le 1:5.8.4-1.fc46               fedora     265.2 KiB
 zig-srpm-macros                   noarch  0:1-9.fc45                   fedora       1.3 KiB
 zip                               ppc64le 0:3.0-46.fc45                fedora     889.2 KiB
 zlib-ng-compat                    ppc64le 0:2.3.3-6.fc46               copr_base  197.0 KiB
 zstd                              ppc64le 0:1.5.7-6.fc46               copr_base  559.5 KiB
Installing groups:
 Buildsystem building group                                                                 

Transaction Summary:
 Installing:       190 packages

Total size of inbound packages is 75 MiB. Need to download 0 B.
After this operation, 283 MiB extra will be used (install 283 MiB, remove 0 B).
[  1/190] tar-2:1.35-9.fc45.ppc64le     100% |   0.0   B/s |   0.0   B |  00m00s
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[  2/190] redhat-rpm-config-0:345-4.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 50/190] pyproject-srpm-macros-0:1.23. 100% |   0.0   B/s |   0.0   B |  00m00s
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[105/190] libselinux-0:3.11-5.fc46.ppc6 100% |   0.0   B/s |   0.0   B |  00m00s
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--------------------------------------------------------------------------------
[190/190] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
Running transaction
Importing OpenPGP key 0x91211FCE:
 UserID     : "Fedora (46) <fedora-46-primary@fedoraproject.org>"
 Fingerprint: D924B10D3E810DABDD8B56B596E7E91491211FCE
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-46-primary
The key was successfully imported.
Importing OpenPGP key 0x91211FCE:
 UserID     : "Fedora (46) <fedora-46-primary@fedoraproject.org>"
 Fingerprint: D924B10D3E810DABDD8B56B596E7E91491211FCE
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-46-primary
The key was successfully imported.
Importing OpenPGP key 0xF577861E:
 UserID     : "Fedora (45) <fedora-45-primary@fedoraproject.org>"
 Fingerprint: 4F50A6114CD5C6976A7F1179655A4B02F577861E
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-45-primary
The key was successfully imported.
Importing OpenPGP key 0x9488FB64:
 UserID     : "Fedora (47) <fedora-47-primary@fedoraproject.org>"
 Fingerprint: B2E766FA50CA6FA2D5ED06FC09D879E09488FB64
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-47-primary
The key was successfully imported.
[  1/192] Verify package files          100% | 147.0   B/s | 190.0   B |  00m01s
>>> Running %pretrans scriptlet: filesystem-0:3.18-59.fc45.ppc64le
>>> Finished %pretrans scriptlet: filesystem-0:3.18-59.fc45.ppc64le
>>> [RPM] /var/lib/mock/fedora-rawhide-ppc64le-1790842179.854768/root/var/cache/dnf/copr_base-bb8f6c99d12f7709/packages/bzip2-1.0.8-24.fc46.ppc64le.rpm: Header OpenPGP V4 RSA/SHA256 signature, key ID 5291f7fa5c4b3009: NOKEY
>>> [RPM] failed to open /var/lib/mock/fedora-rawhide-ppc64le-1790842179.854768/root/etc/group for id/name lookup: No such file or directory
[  2/192] Prepare transaction           100% | 822.0   B/s | 190.0   B |  00m00s
[  3/192] Installing libgcc-0:16.2.1-2. 100% |  70.3 MiB/s | 288.1 KiB |  00m00s
[  4/192] Installing redhat-systemd-pre 100% |   1.4 MiB/s |   1.5 KiB |  00m00s
[  5/192] Installing redhat-systemd-pre 100% |   8.8 MiB/s |  18.1 KiB |  00m00s
[  6/192] Installing libssh-config-0:0. 100% | 796.9 KiB/s | 816.0   B |  00m00s
[  7/192] Installing publicsuffix-list- 100% |  35.2 MiB/s |  72.0 KiB |  00m00s
[  8/192] Installing fedora-release-ide 100% | 449.2 KiB/s | 920.0   B |  00m00s
[  9/192] Installing fedora-gpg-keys-0: 100% |   9.9 MiB/s | 181.7 KiB |  00m00s
[ 10/192] Installing fedora-repos-rawhi 100% |   2.4 MiB/s |   2.5 KiB |  00m00s
[ 11/192] Installing fedora-repos-0:46- 100% |   5.8 MiB/s |   5.9 KiB |  00m00s
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>>> Running sysusers scriptlet: setup-0:2.15.1-2.fc45.noarch
>>> Finished sysusers scriptlet: setup-0:2.15.1-2.fc45.noarch
>>> Scriptlet output:
>>> Creating group 'adm' with GID 4.
>>> Creating group 'audio' with GID 63.
>>> Creating group 'cdrom' with GID 11.
>>> Creating group 'clock' with GID 103.
>>> Creating group 'dialout' with GID 18.
>>> Creating group 'disk' with GID 6.
>>> Creating group 'floppy' with GID 19.
>>> Creating group 'ftp' with GID 50.
>>> Creating group 'games' with GID 20.
>>> Creating group 'input' with GID 104.
>>> Creating group 'kmem' with GID 9.
>>> Creating group 'kvm' with GID 36.
>>> Creating group 'lock' with GID 54.
>>> Creating group 'lp' with GID 7.
>>> Creating group 'mail' with GID 12.
>>> Creating group 'man' with GID 15.
>>> Creating group 'mem' with GID 8.
>>> Creating group 'nobody' with GID 65534.
>>> Creating group 'render' with GID 105.
>>> Creating group 'root' with GID 0.
>>> Creating group 'sgx' with GID 106.
>>> Creating group 'sys' with GID 3.
>>> Creating group 'tape' with GID 33.
>>> Creating group 'tty' with GID 5.
>>> Creating group 'users' with GID 100.
>>> Creating group 'utmp' with GID 22.
>>> Creating group 'video' with GID 39.
>>> Creating group 'wheel' with GID 10.
>>> Creating user 'adm' (adm) with UID 3 and GID 4.
>>> Creating group 'bin' with GID 1.
>>> Creating user 'bin' (bin) with UID 1 and GID 1.
>>> Creating group 'daemon' with GID 2.
>>> Creating user 'daemon' (daemon) with UID 2 and GID 2.
>>> Creating user 'ftp' (FTP User) with UID 14 and GID 50.
>>> Creating user 'games' (games) with UID 12 and GID 100.
>>> Creating user 'halt' (halt) with UID 7 and GID 0.
>>> Creating user 'lp' (lp) with UID 4 and GID 7.
>>> Creating user 'mail' (mail) with UID 8 and GID 12.
>>> Creating user 'nobody' (Kernel Overflow User) with UID 65534 and GID 65534.
>>> Creating user 'operator' (operator) with UID 11 and GID 0.
>>> Creating user 'root' (Super User) with UID 0 and GID 0.
>>> Creating user 'shutdown' (shutdown) with UID 6 and GID 0.
>>> Creating user 'sync' (sync) with UID 5 and GID 0.
>>> 
[ 14/192] Installing setup-0:2.15.1-2.f 100% |  10.5 MiB/s | 731.3 KiB |  00m00s
>>> [RPM] /etc/hosts created as /etc/hosts.rpmnew
[ 15/192] Installing filesystem-0:3.18- 100% | 620.0 KiB/s | 253.6 KiB |  00m00s
[ 16/192] Installing gnulib-l10n-0:2024 100% |  49.7 MiB/s | 661.9 KiB |  00m00s
[ 17/192] Installing coreutils-common-0 100% | 111.2 MiB/s |  11.6 MiB |  00m00s
[ 18/192] Installing pkgconf-m4-0:2.5.1 100% |  14.4 MiB/s |  14.7 KiB |  00m00s
[ 19/192] Installing pcre2-syntax-0:10. 100% |  55.5 MiB/s | 284.3 KiB |  00m00s
[ 20/192] Installing ncurses-base-0:6.6 100% |  18.3 MiB/s | 355.3 KiB |  00m00s
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[ 22/192] Installing glibc-gconv-extra- 100% | 122.3 MiB/s |  18.6 MiB |  00m00s
[ 23/192] Installing glibc-0:2.44.9000- 100% |  74.1 MiB/s |  12.2 MiB |  00m00s
[ 24/192] Installing ncurses-libs-0:6.6 100% |  95.3 MiB/s |   1.4 MiB |  00m00s
[ 25/192] Installing bash-0:5.3.15-2.fc 100% |  70.4 MiB/s |   8.8 MiB |  00m00s
[ 26/192] Installing glibc-minimal-lang 100% | 121.1 KiB/s | 124.0   B |  00m00s
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[ 28/192] Installing bzip2-libs-0:1.0.8 100% |  44.7 MiB/s | 137.3 KiB |  00m00s
[ 29/192] Installing libgpg-error-0:1.6 100% |  16.0 MiB/s |   1.0 MiB |  00m00s
[ 30/192] Installing readline-0:8.3-6.f 100% |  84.6 MiB/s | 693.4 KiB |  00m00s
[ 31/192] Installing libstdc++-0:16.2.1 100% | 124.4 MiB/s |   4.1 MiB |  00m00s
[ 32/192] Installing libzstd-0:1.5.7-6. 100% | 102.8 MiB/s |   1.0 MiB |  00m00s
[ 33/192] Installing elfutils-libelf-0: 100% | 117.0 MiB/s |   1.5 MiB |  00m00s
[ 34/192] Installing libgcrypt-0:1.12.4 100% | 105.2 MiB/s |   1.6 MiB |  00m00s
[ 35/192] Installing libassuan-0:2.5.7- 100% |  53.2 MiB/s | 217.8 KiB |  00m00s
[ 36/192] Installing libacl-0:2.4.0-2.f 100% |  33.4 MiB/s |  68.4 KiB |  00m00s
[ 37/192] Installing gmp-1:6.3.0-6.fc45 100% |  85.5 MiB/s | 788.3 KiB |  00m00s
[ 38/192] Installing systemd-libs-0:262 100% | 119.4 MiB/s |   3.3 MiB |  00m00s
[ 39/192] Installing libuuid-0:2.42.4-2 100% |  34.3 MiB/s |  70.3 KiB |  00m00s
[ 40/192] Installing xz-libs-1:5.8.4-1. 100% |  65.0 MiB/s | 266.3 KiB |  00m00s
[ 41/192] Installing sqlite-libs-0:3.53 100% | 105.6 MiB/s |   2.0 MiB |  00m00s
[ 42/192] Installing popt-0:1.19-11.fc4 100% |  18.4 MiB/s | 151.0 KiB |  00m00s
[ 43/192] Installing npth-0:1.8-5.fc46. 100% |  45.9 MiB/s |  94.1 KiB |  00m00s
[ 44/192] Installing elfutils-libs-0:0. 100% |  95.1 MiB/s | 876.4 KiB |  00m00s
[ 45/192] Installing libblkid-0:2.42.4- 100% |  86.7 MiB/s | 355.3 KiB |  00m00s
[ 46/192] Installing libsepol-0:3.11-2. 100% | 110.7 MiB/s |   1.1 MiB |  00m00s
[ 47/192] Installing gnupg2-gpgconf-0:2 100% |   5.0 MiB/s | 324.8 KiB |  00m00s
[ 48/192] Installing crypto-policies-0: 100% |   9.2 MiB/s | 159.5 KiB |  00m00s
[ 49/192] Installing libxcrypt-0:4.5.2- 100% |  66.3 MiB/s | 339.6 KiB |  00m00s
[ 50/192] Installing pcre2-0:10.47-1.fc 100% | 110.7 MiB/s | 906.5 KiB |  00m00s
[ 51/192] Installing libselinux-0:3.11- 100% |  80.7 MiB/s | 330.4 KiB |  00m00s
[ 52/192] Installing grep-0:3.12-4.fc46 100% |  15.0 MiB/s |   1.0 MiB |  00m00s
[ 53/192] Installing sed-0:4.10-2.fc45. 100% |  13.9 MiB/s | 950.8 KiB |  00m00s
[ 54/192] Installing findutils-1:4.11.0 100% |  28.6 MiB/s |   2.1 MiB |  00m00s
[ 55/192] Installing libtasn1-0:4.21.0- 100% |  54.2 MiB/s | 222.2 KiB |  00m00s
[ 56/192] Installing libunistring-0:1.1 100% | 117.0 MiB/s |   1.9 MiB |  00m00s
[ 57/192] Installing libidn2-0:2.3.8-4. 100% |  46.1 MiB/s | 566.2 KiB |  00m00s
[ 58/192] Installing xz-1:5.8.4-1.fc46. 100% |  19.8 MiB/s |   1.5 MiB |  00m00s
[ 59/192] Installing libmount-0:2.42.4- 100% |  89.4 MiB/s | 549.4 KiB |  00m00s
[ 60/192] Installing gnupg2-verify-0:2. 100% |   8.5 MiB/s | 496.5 KiB |  00m00s
[ 61/192] Installing mpfr-0:4.2.2-4.fc4 100% |  89.4 MiB/s | 915.1 KiB |  00m00s
[ 62/192] Installing gawk-0:5.4.1-1.fc4 100% |  37.9 MiB/s |   3.1 MiB |  00m00s
[ 63/192] Installing dwz-0:0.17-3.fc45. 100% |   6.6 MiB/s | 388.0 KiB |  00m00s
[ 64/192] Installing libksba-0:1.8.1-1. 100% |  66.3 MiB/s | 475.5 KiB |  00m00s
[ 65/192] Installing unzip-0:6.0-71.fc4 100% |   8.9 MiB/s | 536.9 KiB |  00m00s
[ 66/192] Installing file-libs-0:5.48-3 100% | 180.0 MiB/s |  12.4 MiB |  00m00s
[ 67/192] Installing file-0:5.48-3.fc46 100% |   2.5 MiB/s | 143.2 KiB |  00m00s
[ 68/192] Installing diffutils-0:3.12-6 100% |  23.4 MiB/s |   1.7 MiB |  00m00s
[ 69/192] Installing libsmartcols-0:2.4 100% |  70.9 MiB/s | 290.5 KiB |  00m00s
[ 70/192] Installing lua-libs-0:5.5.1-2 100% |  77.2 MiB/s | 395.4 KiB |  00m00s
[ 71/192] Installing libeconf-0:0.7.9-4 100% |  26.9 MiB/s |  82.6 KiB |  00m00s
[ 72/192] Installing libattr-0:2.6.0-2. 100% |  33.6 MiB/s |  68.8 KiB |  00m00s
[ 73/192] Installing libcap-ng-0:0.9.6- 100% |  52.7 MiB/s | 162.0 KiB |  00m00s
[ 74/192] Installing audit-libs-0:4.2.1 100% |  77.1 MiB/s | 552.8 KiB |  00m00s
[ 75/192] Installing pam-libs-0:1.7.2-4 100% |  70.4 MiB/s | 288.2 KiB |  00m00s
[ 76/192] Installing libcap-0:2.78-2.fc 100% |   8.5 MiB/s | 511.9 KiB |  00m00s
[ 77/192] Installing libsemanage-0:3.11 100% |  69.3 MiB/s | 425.9 KiB |  00m00s
[ 78/192] Installing json-c-0:0.18-9.fc 100% |  45.4 MiB/s | 139.6 KiB |  00m00s
[ 79/192] Installing libffi-0:3.8.0-1.f 100% |  86.1 MiB/s | 352.8 KiB |  00m00s
[ 80/192] Installing p11-kit-0:0.26.5-1 100% |  36.7 MiB/s |   3.2 MiB |  00m00s
[ 81/192] Installing alternatives-0:1.3 100% |   1.6 MiB/s |  91.3 KiB |  00m00s
[ 82/192] Installing p11-kit-trust-0:0. 100% |   8.8 MiB/s | 597.6 KiB |  00m00s
[ 83/192] Installing ngtcp2-0:1.22.1-3. 100% |  66.2 MiB/s | 406.6 KiB |  00m00s
[ 84/192] Installing liblastlog2-0:2.42 100% |  17.0 MiB/s | 139.2 KiB |  00m00s
[ 85/192] Installing util-linux-core-0: 100% |  33.6 MiB/s |   2.7 MiB |  00m00s
[ 86/192] Installing zip-0:3.0-46.fc45. 100% |  14.1 MiB/s | 893.1 KiB |  00m00s
[ 87/192] Installing gnupg2-keyboxd-0:2 100% |  32.5 MiB/s | 299.5 KiB |  00m00s
[ 88/192] Installing libpsl-0:0.23.3-1. 100% |  43.4 MiB/s | 133.2 KiB |  00m00s
[ 89/192] Installing tar-2:1.35-9.fc45. 100% |  37.7 MiB/s |   3.1 MiB |  00m00s
[ 90/192] Installing linkdupes-0:0.7.3- 100% |  13.2 MiB/s | 839.8 KiB |  00m00s
[ 91/192] Installing libselinux-utils-0 100% |  19.9 MiB/s |   1.4 MiB |  00m00s
[ 92/192] Installing libfdisk-0:2.42.4- 100% |  78.8 MiB/s | 484.0 KiB |  00m00s
[ 93/192] Installing fips-provider-0:1. 100% | 127.9 MiB/s |   4.7 MiB |  00m00s
[ 94/192] Installing openssl-libs-1:4.0 100% | 120.8 MiB/s |   7.1 MiB |  00m00s
[ 95/192] Installing coreutils-0:9.12-1 100% |  73.5 MiB/s |  10.3 MiB |  00m00s
[ 96/192] Installing ca-certificates-0: 100% | 766.3 KiB/s |   2.5 MiB |  00m03s
[ 97/192] Installing gzip-0:1.14-4.fc46 100% |   7.0 MiB/s | 443.0 KiB |  00m00s
[ 98/192] Installing libfsverity-0:1.7- 100% |  33.7 MiB/s |  69.0 KiB |  00m00s
[ 99/192] Installing rpm-sequoia-0:1.10 100% | 119.0 MiB/s |   4.8 MiB |  00m00s
[100/192] Installing libevent-0:2.1.13- 100% | 106.1 MiB/s |   1.3 MiB |  00m00s
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[102/192] Installing libusb1-0:1.0.30-2 100% |  20.0 MiB/s | 245.2 KiB |  00m00s
>>> Running sysusers scriptlet: tpm2-tss-0:4.2.0-1.fc46.ppc64le
>>> Finished sysusers scriptlet: tpm2-tss-0:4.2.0-1.fc46.ppc64le
>>> Scriptlet output:
>>> Creating group 'tss' with GID 59.
>>> Creating user 'tss' (Account used for TPM access) with UID 59 and GID 59.
>>> 
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[104/192] Installing gnupg2-gpg-agent-0 100% |  14.3 MiB/s | 981.4 KiB |  00m00s
[105/192] Installing ima-evm-utils-libs 100% |  30.4 MiB/s |  93.5 KiB |  00m00s
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[107/192] Installing gnutls-0:3.8.13-5. 100% | 118.5 MiB/s |   4.1 MiB |  00m00s
[108/192] Installing zstd-0:1.5.7-6.fc4 100% |   9.2 MiB/s | 563.1 KiB |  00m00s
[109/192] Installing libxml2-0:2.15.4-1 100% |  26.2 MiB/s |   2.1 MiB |  00m00s
[110/192] Installing bzip2-0:1.0.8-24.f 100% |   3.0 MiB/s | 174.9 KiB |  00m00s
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[112/192] Installing filesystem-srpm-ma 100% |  19.0 MiB/s |  38.9 KiB |  00m00s
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[114/192] Installing patch-0:2.8-5.fc46 100% |   4.5 MiB/s | 264.5 KiB |  00m00s
[115/192] Installing cpio-0:2.15-10.fc4 100% |  18.0 MiB/s |   1.2 MiB |  00m00s
[116/192] Installing librtas-0:2.0.7-2. 100% |  19.7 MiB/s | 322.5 KiB |  00m00s
[117/192] Installing util-linux-0:2.42. 100% |  50.1 MiB/s |   7.1 MiB |  00m00s
[118/192] Installing policycoreutils-0: 100% |  16.6 MiB/s |   1.5 MiB |  00m00s
[119/192] Installing selinux-policy-0:4 100% |   1.2 MiB/s |  34.5 KiB |  00m00s
[120/192] Installing selinux-policy-tar 100% |  51.5 MiB/s |  15.1 MiB |  00m00s
[121/192] Installing build-reproducibil 100% | 757.8 KiB/s |   1.5 KiB |  00m00s
[122/192] Installing libgomp-0:16.2.1-2 100% |  91.8 MiB/s | 658.3 KiB |  00m00s
[123/192] Installing libtool-ltdl-0:2.6 100% |  46.3 MiB/s |  94.9 KiB |  00m00s
[124/192] Installing libpkgconf-0:2.5.1 100% |  43.9 MiB/s | 134.9 KiB |  00m00s
[125/192] Installing pkgconf-0:2.5.1-2. 100% |   2.0 MiB/s | 117.2 KiB |  00m00s
[126/192] Installing pkgconf-pkg-config 100% |  32.2 KiB/s |   1.8 KiB |  00m00s
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[128/192] Installing libarchive-0:3.8.9 100% |  97.5 MiB/s |   1.3 MiB |  00m00s
[129/192] Installing gdbm-libs-1:1.23-1 100% |  57.4 MiB/s | 235.1 KiB |  00m00s
[130/192] Installing cyrus-sasl-lib-0:2 100% |  34.7 MiB/s |   2.9 MiB |  00m00s
[131/192] Installing openldap-0:2.6.14- 100% |  79.6 MiB/s | 896.6 KiB |  00m00s
[132/192] Installing gnupg2-dirmngr-0:2 100% |  13.0 MiB/s | 906.5 KiB |  00m00s
[133/192] Installing gnupg2-0:2.4.9-18. 100% |  60.5 MiB/s |   6.9 MiB |  00m00s
[134/192] Installing gpgverify-0:2.2-5. 100% |   4.6 MiB/s |   9.4 KiB |  00m00s
[135/192] Installing jansson-0:2.14-5.f 100% |  51.6 MiB/s | 158.4 KiB |  00m00s
[136/192] Installing systemd-standalone 100% |  16.4 MiB/s |   1.1 MiB |  00m00s
[137/192] Installing rpm-libs-0:6.1.0-1 100% | 101.0 MiB/s |   1.4 MiB |  00m00s
[138/192] Installing rpm-sign-libs-0:6. 100% |  33.4 MiB/s |  68.3 KiB |  00m00s
[139/192] Installing rpm-build-libs-0:6 100% |  64.2 MiB/s | 328.7 KiB |  00m00s
[140/192] Installing xxhash-libs-0:0.8. 100% |  28.3 MiB/s |  86.8 KiB |  00m00s
[141/192] Installing libverto-0:0.3.2-1 100% |  23.0 MiB/s |  70.8 KiB |  00m00s
[142/192] Installing libcbor-0:0.14.0-3 100% |  45.9 MiB/s | 140.9 KiB |  00m00s
[143/192] Installing libfido2-0:1.17.0- 100% |  67.7 MiB/s | 346.7 KiB |  00m00s
[144/192] Installing libbrotli-0:1.2.0- 100% |  92.2 MiB/s |   1.0 MiB |  00m00s
[145/192] Installing libnghttp2-0:1.69. 100% |  48.6 MiB/s | 198.9 KiB |  00m00s
[146/192] Installing libnghttp3-0:1.18. 100% |  68.1 MiB/s | 209.1 KiB |  00m00s
[147/192] Installing keyutils-libs-0:1. 100% |  48.4 MiB/s |  99.1 KiB |  00m00s
[148/192] Installing libcom_err-0:1.47. 100% |  36.4 MiB/s | 111.9 KiB |  00m00s
[149/192] Installing krb5-libs-0:1.22.2 100% |  99.0 MiB/s |   3.0 MiB |  00m00s
[150/192] Installing libssh-0:0.12.2-1. 100% |  89.4 MiB/s | 915.6 KiB |  00m00s
[151/192] Installing libcurl-0:8.23.0~r 100% |  99.9 MiB/s |   1.4 MiB |  00m00s
[152/192] Installing elfutils-debuginfo 100% |   2.4 MiB/s | 145.7 KiB |  00m00s
[153/192] Installing binutils-0:2.47.50 100% | 103.3 MiB/s |  28.1 MiB |  00m00s
[154/192] Installing elfutils-0:0.196-1 100% |  42.6 MiB/s |   3.5 MiB |  00m00s
[155/192] Installing gdb-minimal-0:17.2 100% |  92.0 MiB/s |  16.3 MiB |  00m00s
[156/192] Installing debugedit-0:5.3-3. 100% |   6.4 MiB/s | 387.3 KiB |  00m00s
[157/192] Installing curl-0:8.23.0~rc2- 100% |   7.4 MiB/s | 528.2 KiB |  00m00s
[158/192] Installing rpm-0:6.1.0-1.fc46 100% |  25.0 MiB/s |   2.8 MiB |  00m00s
[159/192] Installing cmake-srpm-macros- 100% | 392.6 KiB/s | 804.0   B |  00m00s
[160/192] Installing efi-srpm-macros-0: 100% |  20.2 MiB/s |  41.3 KiB |  00m00s
[161/192] Installing java-srpm-macros-0 100% |   1.1 MiB/s |   1.1 KiB |  00m00s
[162/192] Installing lua-srpm-macros-0: 100% |   1.9 MiB/s |   1.9 KiB |  00m00s
[163/192] Installing tree-sitter-srpm-m 100% |   4.7 MiB/s |   9.6 KiB |  00m00s
[164/192] Installing zig-srpm-macros-0: 100% |   1.8 MiB/s |   1.9 KiB |  00m00s
[165/192] Installing rust-srpm-macros-0 100% |   3.1 MiB/s |   6.4 KiB |  00m00s
[166/192] Installing qt6-srpm-macros-0: 100% | 730.5 KiB/s | 748.0   B |  00m00s
[167/192] Installing qt5-srpm-macros-0: 100% | 757.8 KiB/s | 776.0   B |  00m00s
[168/192] Installing perl-srpm-macros-0 100% |   1.1 MiB/s |   1.1 KiB |  00m00s
[169/192] Installing package-notes-srpm 100% |   2.0 MiB/s |   2.1 KiB |  00m00s
[170/192] Installing openblas-srpm-macr 100% | 382.8 KiB/s | 392.0   B |  00m00s
[171/192] Installing ocaml-srpm-macros- 100% |   2.1 MiB/s |   2.1 KiB |  00m00s
[172/192] Installing meson-srpm-macros- 100% |   1.9 MiB/s |   1.9 KiB |  00m00s
[173/192] Installing kernel-srpm-macros 100% |   2.3 MiB/s |   2.3 KiB |  00m00s
[174/192] Installing gnome-srpm-macros- 100% |   4.0 MiB/s |   4.1 KiB |  00m00s
[175/192] Installing gnat-srpm-macros-0 100% | 115.1 KiB/s |   1.3 KiB |  00m00s
[176/192] Installing ghc-srpm-macros-0: 100% |   1.0 MiB/s |   1.0 KiB |  00m00s
[177/192] Installing gap-srpm-macros-0: 100% |   2.6 MiB/s |   2.7 KiB |  00m00s
[178/192] Installing fpc-srpm-macros-0: 100% | 410.2 KiB/s | 420.0   B |  00m00s
[179/192] Installing ansible-srpm-macro 100% |  17.7 MiB/s |  36.2 KiB |  00m00s
[180/192] Installing rpm-build-0:6.1.0- 100% |  10.2 MiB/s | 689.8 KiB |  00m00s
[181/192] Installing erlang-srpm-macros 100% |   1.2 MiB/s |   2.5 KiB |  00m00s
[182/192] Installing pyproject-srpm-mac 100% |   1.9 MiB/s |   4.0 KiB |  00m00s
[183/192] Installing redhat-rpm-config- 100% |  26.6 MiB/s | 190.4 KiB |  00m00s
[184/192] Installing forge-srpm-macros- 100% |  19.7 MiB/s |  40.3 KiB |  00m00s
[185/192] Installing fonts-srpm-macros- 100% |  27.8 MiB/s |  57.0 KiB |  00m00s
[186/192] Installing go-srpm-macros-0:3 100% |  30.8 MiB/s |  63.0 KiB |  00m00s
[187/192] Installing R-srpm-macros-0:1. 100% |   2.1 MiB/s |   4.4 KiB |  00m00s
[188/192] Installing python-srpm-macros 100% |  25.9 MiB/s |  52.9 KiB |  00m00s
[189/192] Installing rpm-plugin-selinux 100% |  33.6 MiB/s |  68.8 KiB |  00m00s
[190/192] Installing which-0:2.25-2.fc4 100% |   2.0 MiB/s | 125.1 KiB |  00m00s
[191/192] Installing shadow-utils-2:4.2 100% |  39.0 MiB/s |   4.9 MiB |  00m00s
[192/192] Installing info-0:7.3-3.fc46. 100% |  32.1 KiB/s | 487.9 KiB |  00m15s
Warning: skipped OpenPGP checks for 61 packages from repository: copr_base
Complete!
Updating and loading repositories:
 fedora                                 100% |  13.8 KiB/s |   6.9 KiB |  00m01s
 Additional repo copr_tstellar_fedora_c 100% |   4.0 KiB/s |   1.5 KiB |  00m00s
 Additional repo copr_fedora_llvm_team_ 100% |   3.9 KiB/s |   1.5 KiB |  00m00s
 Copr repository                        100% |   4.0 KiB/s |   1.5 KiB |  00m00s
Repositories loaded.
Package                    Arch    Version                                     Repository                                                   Size
Installing:
 fedora-clang-default-cc   noarch  0:1-1.fc43                                  copr_tstellar_fedora_clang_default_cc                    17.0   B
Installing dependencies:
 annobin-docs              noarch  0:13.31-1.fc46                              fedora                                                   99.7 KiB
 annobin-plugin-gcc        ppc64le 0:13.31-1.fc46                              fedora                                                  792.0 KiB
 clang                     ppc64le 0:24.0.0~pre20260928.g6909c17f146832-6.fc46 copr_fedora_llvm_team_llvm_snapshots_big_merge_20260928  70.4 MiB
 clang-libs                ppc64le 0:24.0.0~pre20260928.g6909c17f146832-6.fc46 copr_fedora_llvm_team_llvm_snapshots_big_merge_20260928 120.1 MiB
 clang-resource-filesystem ppc64le 0:24.0.0~pre20260928.g6909c17f146832-6.fc46 copr_fedora_llvm_team_llvm_snapshots_big_merge_20260928  15.3 KiB
 compiler-rt               ppc64le 0:24.0.0~pre20260928.g6909c17f146832-6.fc46 copr_fedora_llvm_team_llvm_snapshots_big_merge_20260928  20.0 MiB
 cpp                       ppc64le 0:16.2.1-2.fc46.1                           fedora                                                   39.2 MiB
 expat                     ppc64le 0:2.8.3-1.fc46                              copr_base                                               377.8 KiB
 gcc                       ppc64le 0:16.2.1-2.fc46.1                           fedora                                                  107.3 MiB
 gcc-c++                   ppc64le 0:16.2.1-2.fc46.1                           fedora                                                   43.9 MiB
 gcc-plugin-annobin        ppc64le 0:16.2.1-2.fc46.1                           fedora                                                  132.8 KiB
 glibc-devel               ppc64le 0:2.44.9000-2.fc46                          fedora                                                    3.7 MiB
 kernel-headers            ppc64le 0:7.3.0-0.rc5.45.fc46                       fedora                                                    7.0 MiB
 libasan                   ppc64le 0:16.2.1-2.fc46.1                           fedora                                                    2.2 MiB
 libatomic                 ppc64le 0:16.2.1-2.fc46.1                           fedora                                                   77.0 KiB
 libedit                   ppc64le 0:3.1-60.20260512cvs.fc45                   copr_base                                               344.9 KiB
 libmpc                    ppc64le 0:1.4.1-2.fc46                              copr_base                                               281.7 KiB
 libomp                    ppc64le 0:24.0.0~pre20260928.g6909c17f146832-6.fc46 copr_fedora_llvm_team_llvm_snapshots_big_merge_20260928   3.7 MiB
 libstdc++-devel           ppc64le 0:16.2.1-2.fc46.1                           fedora                                                   41.1 MiB
 libubsan                  ppc64le 0:16.2.1-2.fc46.1                           fedora                                                  668.9 KiB
 libxcrypt-devel           ppc64le 0:4.5.2-4.fc45                              fedora                                                   31.0 KiB
 lld                       ppc64le 0:24.0.0~pre20260928.g6909c17f146832-6.fc46 copr_fedora_llvm_team_llvm_snapshots_big_merge_20260928  44.1 KiB
 lld-libs                  ppc64le 0:24.0.0~pre20260928.g6909c17f146832-6.fc46 copr_fedora_llvm_team_llvm_snapshots_big_merge_20260928   7.0 MiB
 llvm                      ppc64le 0:24.0.0~pre20260928.g6909c17f146832-6.fc46 copr_fedora_llvm_team_llvm_snapshots_big_merge_20260928 144.7 MiB
 llvm-filesystem           ppc64le 0:24.0.0~pre20260928.g6909c17f146832-6.fc46 copr_fedora_llvm_team_llvm_snapshots_big_merge_20260928   0.0   B
 llvm-libs                 ppc64le 0:24.0.0~pre20260928.g6909c17f146832-6.fc46 copr_fedora_llvm_team_llvm_snapshots_big_merge_20260928 160.0 MiB
 make                      ppc64le 1:4.4.1-13.fc46                             copr_base                                                 1.9 MiB
 mpdecimal                 ppc64le 0:4.0.1-4.fc46                              copr_base                                               345.0 KiB
 python-pip-wheel          noarch  0:26.2.1-1.fc46                             fedora                                                    1.3 MiB
 python3                   ppc64le 0:3.15.0~rc2-1.fc46                         fedora                                                   84.6 KiB
 python3-libs              ppc64le 0:3.15.0~rc2-1.fc46                         fedora                                                   50.8 MiB
 tzdata                    noarch  0:2026c-2.fc46                              fedora                                                    1.2 MiB

Transaction Summary:
 Installing:        33 packages

Total size of inbound packages is 207 MiB. Need to download 0 B.
After this operation, 829 MiB extra will be used (install 829 MiB, remove 0 B).
[ 1/33] fedora-clang-default-cc-0:1-1.f 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 2/33] clang-0:24.0.0~pre20260928.g690 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 3/33] gcc-c++-0:16.2.1-2.fc46.1.ppc64 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 4/33] libstdc++-devel-0:16.2.1-2.fc46 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 5/33] clang-libs-0:24.0.0~pre20260928 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 6/33] llvm-libs-0:24.0.0~pre20260928. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 7/33] gcc-0:16.2.1-2.fc46.1.ppc64le   100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 8/33] clang-resource-filesystem-0:24. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 9/33] llvm-filesystem-0:24.0.0~pre202 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[10/33] cpp-0:16.2.1-2.fc46.1.ppc64le   100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[11/33] glibc-devel-0:2.44.9000-2.fc46. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[12/33] libasan-0:16.2.1-2.fc46.1.ppc64 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[13/33] libatomic-0:16.2.1-2.fc46.1.ppc 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[14/33] libubsan-0:16.2.1-2.fc46.1.ppc6 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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--------------------------------------------------------------------------------
[33/33] Total                           100% |   0.0   B/s |   0.0   B |  00m01s
Running transaction
[ 1/35] Verify package files            100% |   8.0   B/s |  33.0   B |  00m04s
[ 2/35] Prepare transaction             100% | 187.0   B/s |  33.0   B |  00m00s
[ 3/35] Installing libmpc-0:1.4.1-2.fc4 100% |  55.3 MiB/s | 283.3 KiB |  00m00s
[ 4/35] Installing clang-resource-files 100% |   2.3 MiB/s |  16.7 KiB |  00m00s
[ 5/35] Installing libstdc++-devel-0:16 100% | 125.9 MiB/s |  41.3 MiB |  00m00s
[ 6/35] Installing compiler-rt-0:24.0.0 100% | 147.2 MiB/s |  20.0 MiB |  00m00s
[ 7/35] Installing cpp-0:16.2.1-2.fc46. 100% | 103.3 MiB/s |  39.2 MiB |  00m00s
[ 8/35] Installing annobin-docs-0:13.31 100% |   8.2 MiB/s | 100.8 KiB |  00m00s
[ 9/35] Installing tzdata-0:2026c-2.fc4 100% |  11.4 MiB/s |   1.5 MiB |  00m00s
[10/35] Installing mpdecimal-0:4.0.1-4. 100% |  84.6 MiB/s | 346.5 KiB |  00m00s
[11/35] Installing expat-0:2.8.3-1.fc46 100% |   6.2 MiB/s | 379.9 KiB |  00m00s
[12/35] Installing python-pip-wheel-0:2 100% |  57.6 MiB/s |   1.3 MiB |  00m00s
[13/35] Installing python3-libs-0:3.15. 100% |  98.6 MiB/s |  51.3 MiB |  00m01s
[14/35] Installing python3-0:3.15.0~rc2 100% |   1.5 MiB/s |  86.4 KiB |  00m00s
[15/35] Installing libedit-0:3.1-60.202 100% |  67.7 MiB/s | 346.6 KiB |  00m00s
[16/35] Installing make-1:4.4.1-13.fc46 100% |  23.9 MiB/s |   1.9 MiB |  00m00s
[17/35] Installing kernel-headers-0:7.3 100% |  44.2 MiB/s |   7.2 MiB |  00m00s
[18/35] Installing glibc-devel-0:2.44.9 100% |  58.8 MiB/s |   3.8 MiB |  00m00s
[19/35] Installing libxcrypt-devel-0:4. 100% |  10.8 MiB/s |  33.3 KiB |  00m00s
[20/35] Installing libubsan-0:16.2.1-2. 100% |  93.4 MiB/s | 669.7 KiB |  00m00s
[21/35] Installing libatomic-0:16.2.1-2 100% |  25.4 MiB/s |  78.2 KiB |  00m00s
[22/35] Installing libasan-0:16.2.1-2.f 100% | 120.4 MiB/s |   2.2 MiB |  00m00s
[23/35] Installing gcc-0:16.2.1-2.fc46. 100% | 120.2 MiB/s | 107.3 MiB |  00m01s
[24/35] Installing gcc-c++-0:16.2.1-2.f 100% |  98.8 MiB/s |  44.0 MiB |  00m00s
[25/35] Installing llvm-filesystem-0:24 100% | 531.2 KiB/s |   1.1 KiB |  00m00s
[26/35] Installing llvm-libs-0:24.0.0~p 100% | 132.5 MiB/s | 160.0 MiB |  00m01s
[27/35] Installing clang-libs-0:24.0.0~ 100% | 134.7 MiB/s | 120.2 MiB |  00m01s
[28/35] Installing clang-0:24.0.0~pre20 100% | 151.7 MiB/s |  70.4 MiB |  00m00s
[29/35] Installing llvm-0:24.0.0~pre202 100% | 122.4 MiB/s | 144.8 MiB |  00m01s
[30/35] Installing libomp-0:24.0.0~pre2 100% | 119.7 MiB/s |   3.7 MiB |  00m00s
[31/35] Installing lld-libs-0:24.0.0~pr 100% | 111.4 MiB/s |   7.0 MiB |  00m00s
[32/35] Installing lld-0:24.0.0~pre2026 100% | 597.0 KiB/s |  47.2 KiB |  00m00s
[33/35] Installing fedora-clang-default 100% | 140.6 KiB/s | 288.0   B |  00m00s
[34/35] Installing annobin-plugin-gcc-0 100% |  20.9 MiB/s | 793.7 KiB |  00m00s
[35/35] Installing gcc-plugin-annobin-0 100% | 417.6 KiB/s | 134.5 KiB |  00m00s
Warning: skipped OpenPGP checks for 16 packages from repositories: copr_base, copr_fedora_llvm_team_llvm_snapshots_big_merge_20260928, copr_tstellar_fedora_clang_default_cc
Complete!
Finish: installing minimal buildroot with dnf5
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: R-srpm-macros-1.3.7-3.fc45.noarch
add-determinism-0.7.3-3.fc45.ppc64le
alternatives-1.33-6.fc46.ppc64le
annobin-docs-13.31-1.fc46.noarch
annobin-plugin-gcc-13.31-1.fc46.ppc64le
ansible-srpm-macros-1-22.fc45.noarch
audit-libs-4.2.1-2.fc45.ppc64le
bash-5.3.15-2.fc46.ppc64le
binutils-2.47.50-11.fc46.ppc64le
build-reproducibility-srpm-macros-0.7.3-3.fc45.noarch
bzip2-1.0.8-24.fc46.ppc64le
bzip2-libs-1.0.8-24.fc46.ppc64le
ca-certificates-2026.2.90_v9.0.317-1.fc46.noarch
clang-24.0.0~pre20260928.g6909c17f146832-6.fc46.ppc64le
clang-libs-24.0.0~pre20260928.g6909c17f146832-6.fc46.ppc64le
clang-resource-filesystem-24.0.0~pre20260928.g6909c17f146832-6.fc46.ppc64le
cmake-srpm-macros-4.3.0-5.fc45.noarch
compiler-rt-24.0.0~pre20260928.g6909c17f146832-6.fc46.ppc64le
coreutils-9.12-1.fc46.ppc64le
coreutils-common-9.12-1.fc46.ppc64le
cpio-2.15-10.fc46.ppc64le
cpp-16.2.1-2.fc46.1.ppc64le
crypto-policies-20260713-2.gitc42da77.fc45.noarch
curl-8.23.0~rc2-1.fc46.ppc64le
cyrus-sasl-lib-2.1.28-37.fc45.ppc64le
debugedit-5.3-3.fc46.ppc64le
diffutils-3.12-6.fc46.ppc64le
dwz-0.17-3.fc45.ppc64le
ed-1.22.6-1.fc46.ppc64le
efi-srpm-macros-6-9.fc45.noarch
elfutils-0.196-1.fc46.ppc64le
elfutils-debuginfod-client-0.196-1.fc46.ppc64le
elfutils-libelf-0.196-1.fc46.ppc64le
elfutils-libs-0.196-1.fc46.ppc64le
erlang-srpm-macros-0.3.11-2.fc45.noarch
expat-2.8.3-1.fc46.ppc64le
fedora-clang-default-cc-1-1.fc43.noarch
fedora-gpg-keys-46-0.3.noarch
fedora-release-46-0.1.noarch
fedora-release-common-46-0.1.noarch
fedora-release-identity-basic-46-0.1.noarch
fedora-repos-46-0.3.noarch
fedora-repos-rawhide-46-0.3.noarch
file-5.48-3.fc46.ppc64le
file-libs-5.48-3.fc46.ppc64le
filesystem-3.18-59.fc45.ppc64le
filesystem-srpm-macros-3.18-59.fc45.noarch
findutils-4.11.0-2.fc46.ppc64le
fips-provider-1.5.3-1.fc46.ppc64le
fonts-srpm-macros-5.0.0-4.fc45.noarch
forge-srpm-macros-0.4.0-5.fc45.noarch
fpc-srpm-macros-1.3-17.fc45.noarch
gap-srpm-macros-2-3.fc45.noarch
gawk-5.4.1-1.fc46.ppc64le
gcc-16.2.1-2.fc46.1.ppc64le
gcc-c++-16.2.1-2.fc46.1.ppc64le
gcc-plugin-annobin-16.2.1-2.fc46.1.ppc64le
gdb-minimal-17.2-6.fc46.ppc64le
gdbm-libs-1.23-12.fc46.ppc64le
ghc-srpm-macros-1.10-2.fc45.noarch
glibc-2.44.9000-2.fc46.ppc64le
glibc-common-2.44.9000-2.fc46.ppc64le
glibc-devel-2.44.9000-2.fc46.ppc64le
glibc-gconv-extra-2.44.9000-2.fc46.ppc64le
glibc-minimal-langpack-2.44.9000-2.fc46.ppc64le
gmp-6.3.0-6.fc45.ppc64le
gnat-srpm-macros-7-3.fc45.noarch
gnome-srpm-macros-1.0-2.fc45.noarch
gnulib-l10n-20241231-4.fc46.noarch
gnupg2-2.4.9-18.fc46.ppc64le
gnupg2-dirmngr-2.4.9-18.fc46.ppc64le
gnupg2-gpg-agent-2.4.9-18.fc46.ppc64le
gnupg2-gpgconf-2.4.9-18.fc46.ppc64le
gnupg2-keyboxd-2.4.9-18.fc46.ppc64le
gnupg2-verify-2.4.9-18.fc46.ppc64le
gnutls-3.8.13-5.fc46.ppc64le
go-srpm-macros-3.8.0-3.fc45.noarch
gpg-pubkey-4f50a6114cd5c6976a7f1179655a4b02f577861e-6888bc98
gpg-pubkey-b2e766fa50ca6fa2d5ed06fc09d879e09488fb64-6a6b46b4
gpg-pubkey-d924b10d3e810dabdd8b56b596e7e91491211fce-697c9899
gpgverify-2.2-5.fc45.noarch
grep-3.12-4.fc46.ppc64le
gzip-1.14-4.fc46.ppc64le
ima-evm-utils-libs-1.6.2-12.fc46.ppc64le
info-7.3-3.fc46.ppc64le
jansson-2.14-5.fc46.ppc64le
java-srpm-macros-1-9.fc45.noarch
json-c-0.18-9.fc46.ppc64le
kernel-headers-7.3.0-0.rc5.45.fc46.ppc64le
kernel-srpm-macros-1.0-30.fc45.noarch
keyutils-libs-1.6.3-8.fc46.ppc64le
krb5-libs-1.22.2-9.fc45.ppc64le
libacl-2.4.0-2.fc45.ppc64le
libarchive-3.8.9-2.fc46.ppc64le
libasan-16.2.1-2.fc46.1.ppc64le
libassuan-2.5.7-6.fc46.ppc64le
libatomic-16.2.1-2.fc46.1.ppc64le
libattr-2.6.0-2.fc46.ppc64le
libblkid-2.42.4-2.fc46.ppc64le
libbrotli-1.2.0-6.fc46.ppc64le
libcap-2.78-2.fc45.ppc64le
libcap-ng-0.9.6-1.fc46.ppc64le
libcbor-0.14.0-3.fc45.ppc64le
libcom_err-1.47.4-2.fc46.ppc64le
libcurl-8.23.0~rc2-1.fc46.ppc64le
libeconf-0.7.9-4.fc46.ppc64le
libedit-3.1-60.20260512cvs.fc45.ppc64le
libevent-2.1.13-1.fc46.ppc64le
libfdisk-2.42.4-2.fc46.ppc64le
libffi-3.8.0-1.fc46.ppc64le
libfido2-1.17.0-5.fc46.ppc64le
libfsverity-1.7-4.fc45.ppc64le
libgcc-16.2.1-2.fc46.1.ppc64le
libgcrypt-1.12.4-1.fc46.ppc64le
libgomp-16.2.1-2.fc46.1.ppc64le
libgpg-error-1.61-2.fc46.ppc64le
libidn2-2.3.8-4.fc46.ppc64le
libksba-1.8.1-1.fc46.ppc64le
liblastlog2-2.42.4-2.fc46.ppc64le
libmount-2.42.4-2.fc46.ppc64le
libmpc-1.4.1-2.fc46.ppc64le
libnghttp2-1.69.0-6.fc46.ppc64le
libnghttp3-1.18.0-1.fc46.ppc64le
libomp-24.0.0~pre20260928.g6909c17f146832-6.fc46.ppc64le
libpkgconf-2.5.1-2.fc46.ppc64le
libpsl-0.23.3-1.fc46.ppc64le
librtas-2.0.7-2.fc45.ppc64le
libselinux-3.11-5.fc46.ppc64le
libselinux-utils-3.11-5.fc46.ppc64le
libsemanage-3.11-4.fc46.ppc64le
libsepol-3.11-2.fc46.ppc64le
libsmartcols-2.42.4-2.fc46.ppc64le
libssh-0.12.2-1.fc45.ppc64le
libssh-config-0.12.2-1.fc45.noarch
libstdc++-16.2.1-2.fc46.1.ppc64le
libstdc++-devel-16.2.1-2.fc46.1.ppc64le
libtasn1-4.21.0-2.fc46.ppc64le
libtool-ltdl-2.6.2-1.fc46.ppc64le
libubsan-16.2.1-2.fc46.1.ppc64le
libunistring-1.1-12.fc46.ppc64le
libusb1-1.0.30-2.fc45.ppc64le
libuuid-2.42.4-2.fc46.ppc64le
libverto-0.3.2-13.fc45.ppc64le
libxcrypt-4.5.2-4.fc45.ppc64le
libxcrypt-devel-4.5.2-4.fc45.ppc64le
libxml2-2.15.4-1.fc46.ppc64le
libzstd-1.5.7-6.fc46.ppc64le
linkdupes-0.7.3-3.fc45.ppc64le
lld-24.0.0~pre20260928.g6909c17f146832-6.fc46.ppc64le
lld-libs-24.0.0~pre20260928.g6909c17f146832-6.fc46.ppc64le
llvm-24.0.0~pre20260928.g6909c17f146832-6.fc46.ppc64le
llvm-filesystem-24.0.0~pre20260928.g6909c17f146832-6.fc46.ppc64le
llvm-libs-24.0.0~pre20260928.g6909c17f146832-6.fc46.ppc64le
lua-libs-5.5.1-2.fc46.ppc64le
lua-srpm-macros-1-18.fc45.noarch
lz4-libs-1.10.0-5.fc46.ppc64le
make-4.4.1-13.fc46.ppc64le
meson-srpm-macros-1.12.1-2.fc46.noarch
mpdecimal-4.0.1-4.fc46.ppc64le
mpfr-4.2.2-4.fc45.ppc64le
ncurses-base-6.6-3.fc46.noarch
ncurses-libs-6.6-3.fc46.ppc64le
nettle-4.0-5.fc45.ppc64le
ngtcp2-1.22.1-3.fc45.ppc64le
ngtcp2-crypto-ossl-1.22.1-3.fc45.ppc64le
npth-1.8-5.fc46.ppc64le
ocaml-srpm-macros-11-4.fc45.noarch
openblas-srpm-macros-2-22.fc45.noarch
openldap-2.6.14-1.fc46.ppc64le
openssl-libs-4.0.2-3.fc46.ppc64le
p11-kit-0.26.5-1.fc46.ppc64le
p11-kit-trust-0.26.5-1.fc46.ppc64le
package-notes-srpm-macros-0.20-2.fc45.noarch
pam-libs-1.7.2-4.fc46.ppc64le
patch-2.8-5.fc46.ppc64le
pcre2-10.47-1.fc46.2.ppc64le
pcre2-syntax-10.47-1.fc46.2.noarch
perl-srpm-macros-1-65.fc45.noarch
pkgconf-2.5.1-2.fc46.ppc64le
pkgconf-m4-2.5.1-2.fc46.noarch
pkgconf-pkg-config-2.5.1-2.fc46.ppc64le
policycoreutils-3.11-2.fc46.ppc64le
popt-1.19-11.fc46.ppc64le
publicsuffix-list-dafsa-20260624-2.fc45.noarch
pyproject-srpm-macros-1.23.2-1.fc45.noarch
python-pip-wheel-26.2.1-1.fc46.noarch
python-srpm-macros-3.15-2.fc45.noarch
python3-3.15.0~rc2-1.fc46.ppc64le
python3-libs-3.15.0~rc2-1.fc46.ppc64le
qt5-srpm-macros-5.15.18-3.fc45.noarch
qt6-srpm-macros-6.11.2-1.fc46.noarch
readline-8.3-6.fc46.ppc64le
redhat-rpm-config-345-4.fc46.noarch
redhat-systemd-presets-102-3.fc45.noarch
redhat-systemd-presets-common-102-3.fc45.noarch
rpm-6.1.0-1.fc46.ppc64le
rpm-build-6.1.0-1.fc46.ppc64le
rpm-build-libs-6.1.0-1.fc46.ppc64le
rpm-libs-6.1.0-1.fc46.ppc64le
rpm-plugin-selinux-6.1.0-1.fc46.ppc64le
rpm-sequoia-1.10.3-1.fc46.ppc64le
rpm-sign-libs-6.1.0-1.fc46.ppc64le
rust-srpm-macros-28.5-2.fc45.noarch
sed-4.10-2.fc45.ppc64le
selinux-policy-45.19-1.fc46.noarch
selinux-policy-targeted-45.19-1.fc46.noarch
setup-2.15.1-2.fc45.noarch
shadow-utils-4.20.0-1.fc46.ppc64le
sqlite-libs-3.53.4-1.fc45.ppc64le
systemd-libs-262-1.fc46.ppc64le
systemd-standalone-sysusers-262-1.fc46.ppc64le
tar-1.35-9.fc45.ppc64le
tpm2-tss-4.2.0-1.fc46.ppc64le
tree-sitter-srpm-macros-0.4.6-2.fc45.noarch
tzdata-2026c-2.fc46.noarch
unzip-6.0-71.fc45.ppc64le
util-linux-2.42.4-2.fc46.ppc64le
util-linux-core-2.42.4-2.fc46.ppc64le
which-2.25-2.fc46.ppc64le
xxhash-libs-0.8.4-1.fc46.ppc64le
xz-5.8.4-1.fc46.ppc64le
xz-libs-5.8.4-1.fc46.ppc64le
zig-srpm-macros-1-9.fc45.noarch
zip-3.0-46.fc45.ppc64le
zlib-ng-compat-2.3.3-6.fc46.ppc64le
zstd-1.5.7-6.fc46.ppc64le
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: ppc64le
Building for target ppc64le
setting SOURCE_DATE_EPOCH=1784678400
Wrote: /builddir/build/SRPMS/bcftools-1.24-2.fc46.src.rpm
Finish: rpmbuild -bs
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-ppc64le-1790842179.854768/root/var/log/dnf5.log
INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz
/bin/tar: Removing leading `/' from member names
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-qlbu6ir7/bcftools/bcftools.spec) Config(child) 1 minutes 12 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/bcftools-1.24-2.fc46.src.rpm)  Config(fedora-rawhide-ppc64le)
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-bootstrap-1790842179.854768/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-bootstrap-1790842179.854768/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-1790842179.854768/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-6.1.0-1.fc46.ppc64le
  rpm-sequoia-1.10.3-1.fc46.ppc64le
  dnf5-5.4.6.0-1.fc46.ppc64le
  dnf5-plugins-5.4.6.0-1.fc46.ppc64le
Finish: chroot init
Start: build phase for bcftools-1.24-2.fc46.src.rpm
Start: build setup for bcftools-1.24-2.fc46.src.rpm
Building target platforms: ppc64le
Building for target ppc64le
setting SOURCE_DATE_EPOCH=1784678400
Wrote: /builddir/build/SRPMS/bcftools-1.24-2.fc46.src.rpm
Updating and loading repositories:
 fedora                                 100% |  17.6 KiB/s |   6.9 KiB |  00m00s
 Additional repo copr_tstellar_fedora_c 100% |   5.6 KiB/s |   1.5 KiB |  00m00s
 Additional repo copr_fedora_llvm_team_ 100% |   5.3 KiB/s |   1.5 KiB |  00m00s
 Copr repository                        100% |   5.6 KiB/s |   1.5 KiB |  00m00s
Repositories loaded.
Package "gcc-16.2.1-2.fc46.1.ppc64le" is already installed.
Package "make-1:4.4.1-13.fc46.ppc64le" is already installed.

Package                   Arch    Version                           Repository      Size
Installing:
 autoconf                 noarch  0:2.73-4.fc45                     fedora       2.9 MiB
 automake                 noarch  0:1.18.1-5.fc45                   fedora       1.8 MiB
 gsl-devel                ppc64le 0:2.8-4.fc45                      fedora       1.6 MiB
 htslib-devel             ppc64le 0:1.24-1.fc46                     copr_base  466.8 KiB
 htslib-tools             ppc64le 0:1.24-1.fc46                     copr_base    4.1 MiB
 perl-ExtUtils-Embed      noarch  0:1.35-527.fc45                   fedora      15.6 KiB
 perl-File-Temp           noarch  1:0.231.200-527.fc45              fedora     163.7 KiB
 perl-FindBin             noarch  0:1.54-527.fc45                   fedora       6.8 KiB
 perl-Getopt-Long         noarch  1:2.58-527.fc45                   fedora     144.5 KiB
 perl-interpreter         ppc64le 4:5.44.0-527.fc45                 fedora     175.7 KiB
 zlib-ng-compat-devel     ppc64le 0:2.3.3-6.fc46                    copr_base  107.0 KiB
Installing dependencies:
 cmake-filesystem         ppc64le 0:4.3.0-5.fc45                    fedora       0.0   B
 emacs-filesystem         ppc64le 1:31.1-1.fc46                     fedora       0.0   B
 gettext                  ppc64le 0:1.0-4.fc46                      fedora      18.7 MiB
 gettext-common-devel     noarch  0:1.0-4.fc46                      fedora     596.2 KiB
 gettext-devel            ppc64le 0:1.0-4.fc46                      fedora       1.4 MiB
 gettext-envsubst         ppc64le 0:1.0-4.fc46                      fedora     106.4 KiB
 gettext-libs             ppc64le 0:1.0-4.fc46                      fedora       2.7 MiB
 gettext-runtime          ppc64le 0:1.0-4.fc46                      fedora     913.3 KiB
 groff-base               ppc64le 0:1.24.1-2.fc46                   copr_base    4.9 MiB
 gsl                      ppc64le 0:2.8-4.fc45                      fedora       4.4 MiB
 htslib                   ppc64le 0:1.24-1.fc46                     copr_base    1.5 MiB
 libtextstyle             ppc64le 0:1.0-4.fc46                      fedora     263.1 KiB
 m4                       ppc64le 0:1.4.21-3.fc45                   fedora     952.5 KiB
 ncurses                  ppc64le 0:6.6-3.fc46                      copr_base  958.0 KiB
 perl-AutoLoader          noarch  0:5.74-527.fc45                   fedora      20.6 KiB
 perl-AutoSplit           noarch  0:5.74-527.fc45                   fedora      23.1 KiB
 perl-B                   ppc64le 0:1.92-527.fc45                   fedora     557.4 KiB
 perl-Benchmark           noarch  0:1.27-527.fc45                   fedora      36.4 KiB
 perl-Carp                noarch  0:1.54-527.fc45                   fedora      46.6 KiB
 perl-Class-Struct        noarch  0:0.68-527.fc45                   fedora      25.4 KiB
 perl-Data-Dumper         ppc64le 0:2.192-528.fc45                  fedora     135.2 KiB
 perl-Devel-PPPort        ppc64le 0:3.73-527.fc45                   fedora     981.7 KiB
 perl-Digest              noarch  0:1.20-527.fc45                   fedora      35.2 KiB
 perl-Digest-MD5          ppc64le 0:2.59-527.fc45                   fedora     103.2 KiB
 perl-DynaLoader          ppc64le 0:1.57-527.fc45                   fedora      32.1 KiB
 perl-Encode              ppc64le 4:3.24-527.fc45                   fedora       4.8 MiB
 perl-Errno               ppc64le 0:1.39-527.fc45                   fedora       8.4 KiB
 perl-Exporter            noarch  0:5.79-527.fc45                   fedora      54.2 KiB
 perl-ExtUtils-Command    noarch  2:7.78-527.fc45                   fedora       9.6 KiB
 perl-ExtUtils-Constant   noarch  0:0.25-527.fc45                   fedora      85.9 KiB
 perl-ExtUtils-Install    noarch  0:2.22-527.fc45                   fedora      85.5 KiB
 perl-ExtUtils-MakeMaker  noarch  2:7.78-527.fc45                   fedora     740.0 KiB
 perl-ExtUtils-Manifest   noarch  1:1.75-527.fc45                   fedora      84.8 KiB
 perl-ExtUtils-ParseXS    noarch  1:3.64-1.fc45                     fedora     723.3 KiB
 perl-Fcntl               ppc64le 0:1.20-527.fc45                   fedora      92.3 KiB
 perl-File-Basename       noarch  0:2.86-527.fc45                   fedora      14.0 KiB
 perl-File-Compare        noarch  0:1.100.800-527.fc45              fedora       5.6 KiB
 perl-File-Copy           noarch  0:2.43-527.fc45                   fedora      19.6 KiB
 perl-File-Find           noarch  0:1.44-527.fc45                   fedora      42.0 KiB
 perl-File-Path           noarch  0:2.18-527.fc45                   fedora      63.4 KiB
 perl-File-stat           noarch  0:1.15-527.fc45                   fedora      13.7 KiB
 perl-FileHandle          noarch  0:2.05-527.fc45                   fedora       9.4 KiB
 perl-Getopt-Std          noarch  0:1.15-527.fc45                   fedora      12.5 KiB
 perl-HTTP-Tiny           noarch  0:0.096-528.fc45                  fedora     162.4 KiB
 perl-Hash-Util           ppc64le 0:0.32-527.fc45                   fedora      98.6 KiB
 perl-Hash-Util-FieldHash ppc64le 0:1.27-527.fc45                   fedora     106.3 KiB
 perl-IO                  ppc64le 0:1.56-527.fc45                   fedora     191.0 KiB
 perl-IO-Socket-IP        noarch  0:0.44-527.fc45                   fedora     100.5 KiB
 perl-IO-Socket-SSL       noarch  0:2.099-2.fc45                    fedora     726.9 KiB
 perl-IPC-Open3           noarch  0:1.24-527.fc45                   fedora      27.7 KiB
 perl-MIME-Base32         noarch  0:1.303-26.fc45                   fedora      30.7 KiB
 perl-MIME-Base64         ppc64le 0:3.16-527.fc45                   fedora      93.5 KiB
 perl-Net-SSLeay          ppc64le 0:1.96-5.fc45                     fedora       1.5 MiB
 perl-POSIX               ppc64le 0:2.26-527.fc45                   fedora     326.1 KiB
 perl-PathTools           ppc64le 0:3.95-527.fc45                   fedora     223.8 KiB
 perl-Pod-Escapes         noarch  1:1.07-527.fc45                   fedora      24.9 KiB
 perl-Pod-Perldoc         noarch  0:3.28.01-527.fc45                fedora     163.8 KiB
 perl-Pod-Simple          noarch  1:3.48-527.fc45                   fedora     565.2 KiB
 perl-Pod-Usage           noarch  4:2.05-527.fc45                   fedora      86.3 KiB
 perl-Scalar-List-Utils   ppc64le 5:1.70-527.fc45                   fedora     152.5 KiB
 perl-SelectSaver         noarch  0:1.03-527.fc45                   fedora       2.1 KiB
 perl-Socket              ppc64le 4:2.043-1.fc46                    fedora     145.4 KiB
 perl-Storable            ppc64le 1:3.41-527.fc45                   fedora     242.8 KiB
 perl-Symbol              noarch  0:1.09-527.fc45                   fedora       6.8 KiB
 perl-Term-ANSIColor      noarch  0:5.01-527.fc45                   fedora      97.5 KiB
 perl-Term-Cap            noarch  0:1.18-527.fc45                   fedora      29.3 KiB
 perl-Test-Harness        noarch  1:3.52-528.fc45                   fedora     560.9 KiB
 perl-Text-ParseWords     noarch  0:3.31-527.fc45                   fedora      13.6 KiB
 perl-Text-Tabs+Wrap      noarch  0:2024.001-527.fc45               fedora      22.6 KiB
 perl-Thread-Queue        noarch  0:3.14-527.fc45                   fedora      28.9 KiB
 perl-Time-HiRes          ppc64le 4:1.9780-527.fc45                 fedora     151.3 KiB
 perl-Time-Local          noarch  2:1.350-527.fc45                  fedora      69.0 KiB
 perl-URI                 noarch  0:5.37-1.fc46                     fedora     275.5 KiB
 perl-Unicode-Normalize   ppc64le 0:1.32-527.fc45                   fedora     524.3 KiB
 perl-base                noarch  0:2.27-527.fc45                   fedora      12.6 KiB
 perl-constant            noarch  0:1.33-528.fc45                   fedora      26.3 KiB
 perl-devel               ppc64le 4:5.44.0-527.fc45                 fedora       4.1 MiB
 perl-fields              noarch  0:2.27-527.fc45                   fedora      11.9 KiB
 perl-if                  noarch  0:0.61.000-527.fc45               fedora       5.8 KiB
 perl-lib                 ppc64le 0:0.65-527.fc45                   fedora       8.5 KiB
 perl-libnet              noarch  0:3.15-528.fc45                   fedora     288.4 KiB
 perl-libs                ppc64le 4:5.44.0-527.fc45                 fedora      12.8 MiB
 perl-locale              noarch  0:1.13-527.fc45                   fedora       6.1 KiB
 perl-mro                 ppc64le 0:1.30-527.fc45                   fedora      81.1 KiB
 perl-overload            noarch  0:1.40-527.fc45                   fedora      71.6 KiB
 perl-overloading         noarch  0:0.03-527.fc45                   fedora       4.8 KiB
 perl-parent              noarch  1:0.244-527.fc45                  fedora      10.3 KiB
 perl-podlators           noarch  1:6.1.1-1.fc46                    fedora     327.2 KiB
 perl-threads             ppc64le 1:2.45-527.fc45                   fedora     134.7 KiB
 perl-threads-shared      ppc64le 0:1.73-527.fc45                   fedora     103.3 KiB
 perl-vars                noarch  0:1.05-527.fc45                   fedora       3.9 KiB
 perl-version             ppc64le 9:0.99.34-527.fc45                fedora     160.4 KiB
 python3-pyparsing        noarch  0:3.1.2-19.fc46                   fedora       1.0 MiB
 systemtap-sdt-devel      ppc64le 0:5.6~pre17846435g2da140e3-4.fc46 fedora     189.2 KiB
 systemtap-sdt-dtrace     ppc64le 0:5.6~pre17846435g2da140e3-4.fc46 fedora     185.8 KiB

Transaction Summary:
 Installing:       106 packages

Total size of inbound packages is 21 MiB. Need to download 3 MiB.
After this operation, 84 MiB extra will be used (install 84 MiB, remove 0 B).
[  1/106] autoconf-0:2.73-4.fc45.noarch 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[  2/106] automake-0:1.18.1-5.fc45.noar 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[  3/106] perl-File-Temp-1:0.231.200-52 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[  4/106] perl-Getopt-Long-1:2.58-527.f 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[  5/106] perl-interpreter-4:5.44.0-527 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[  6/106] zlib-ng-compat-devel-0:2.3.3- 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[  7/106] emacs-filesystem-1:31.1-1.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[  8/106] perl-Carp-0:1.54-527.fc45.noa 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[  9/106] perl-Data-Dumper-0:2.192-528. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 10/106] perl-Exporter-0:5.79-527.fc45 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 11/106] perl-Text-ParseWords-0:3.31-5 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 12/106] perl-constant-0:1.33-528.fc45 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 13/106] perl-File-Path-0:2.18-527.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 14/106] perl-Thread-Queue-0:3.14-527. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 15/106] perl-threads-1:2.45-527.fc45. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 16/106] perl-Scalar-List-Utils-5:1.70 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 17/106] perl-parent-1:0.244-527.fc45. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 18/106] perl-Pod-Usage-4:2.05-527.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 19/106] perl-libs-4:5.44.0-527.fc45.p 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 20/106] cmake-filesystem-0:4.3.0-5.fc 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 21/106] perl-threads-shared-0:1.73-52 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 22/106] perl-Pod-Perldoc-0:3.28.01-52 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 23/106] perl-podlators-1:6.1.1-1.fc46 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 24/106] perl-Encode-4:3.24-527.fc45.p 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 25/106] perl-HTTP-Tiny-0:0.096-528.fc 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 26/106] perl-Pod-Simple-1:3.48-527.fc 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 27/106] perl-Term-ANSIColor-0:5.01-52 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 28/106] perl-Term-Cap-0:1.18-527.fc45 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 29/106] perl-MIME-Base64-0:3.16-527.f 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 30/106] perl-Storable-1:3.41-527.fc45 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 31/106] perl-Errno-0:1.39-527.fc45.pp 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 32/106] perl-Fcntl-0:1.20-527.fc45.pp 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 33/106] perl-IO-0:1.56-527.fc45.ppc64 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 34/106] perl-IO-Socket-SSL-0:2.099-2. 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 35/106] perl-Net-SSLeay-0:1.96-5.fc45 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 36/106] perl-Socket-4:2.043-1.fc46.pp 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 37/106] perl-Time-HiRes-4:1.9780-527. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 38/106] perl-Time-Local-2:1.350-527.f 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 39/106] perl-PathTools-0:3.95-527.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 40/106] perl-Pod-Escapes-1:1.07-527.f 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 41/106] perl-Text-Tabs+Wrap-0:2024.00 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 42/106] perl-devel-4:5.44.0-527.fc45. 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 43/106] perl-POSIX-0:2.26-527.fc45.pp 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 44/106] perl-B-0:1.92-527.fc45.ppc64l 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 45/106] perl-IO-Socket-IP-0:0.44-527. 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 46/106] perl-URI-0:5.37-1.fc46.noarch 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 47/106] perl-Devel-PPPort-0:3.73-527. 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 48/106] perl-ExtUtils-Install-0:2.22- 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 49/106] perl-ExtUtils-ParseXS-1:3.64- 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 50/106] perl-MIME-Base32-0:1.303-26.f 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 51/106] perl-Unicode-Normalize-0:1.32 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 52/106] perl-libnet-0:3.15-528.fc45.n 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 53/106] perl-ExtUtils-MakeMaker-2:7.7 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 54/106] perl-Digest-MD5-0:2.59-527.fc 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 55/106] perl-ExtUtils-Command-2:7.78- 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 56/106] perl-ExtUtils-Manifest-1:1.75 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 57/106] perl-Test-Harness-1:3.52-528. 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 58/106] perl-version-9:0.99.34-527.fc 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 61/106] perl-locale-0:1.13-527.fc45.n 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 62/106] perl-overload-0:1.40-527.fc45 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 64/106] perl-File-Basename-0:2.86-527 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 70/106] perl-File-Compare-0:1.100.800 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 71/106] perl-vars-0:1.05-527.fc45.noa 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 72/106] systemtap-sdt-devel-0:5.6~pre 100% |   0.0   B/s |   0.0   B |  00m00s
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>>> Already downloaded
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>>> Already downloaded
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>>> Already downloaded
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>>> Already downloaded
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>>> Already downloaded
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>>> Already downloaded
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>>> Already downloaded
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>>> Already downloaded
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>>> Already downloaded
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>>> Already downloaded
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>>> Already downloaded
[100/106] gsl-devel-0:2.8-4.fc45.ppc64l 100% |  49.2 MiB/s | 655.0 KiB |  00m00s
[101/106] perl-ExtUtils-Embed-0:1.35-52 100% |   8.5 MiB/s |  17.4 KiB |  00m00s
[102/106] perl-FindBin-0:1.54-527.fc45. 100% |   6.8 MiB/s |  13.9 KiB |  00m00s
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--------------------------------------------------------------------------------
[106/106] Total                         100% |   5.9 MiB/s |   3.3 MiB |  00m01s
Running transaction
[  1/108] Verify package files          100% | 303.0   B/s | 106.0   B |  00m00s
[  2/108] Prepare transaction           100% | 716.0   B/s | 106.0   B |  00m00s
[  3/108] Installing libtextstyle-0:1.0 100% |  64.4 MiB/s | 263.9 KiB |  00m00s
[  4/108] Installing gettext-libs-0:1.0 100% | 109.1 MiB/s |   2.7 MiB |  00m00s
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[  6/108] Installing m4-0:1.4.21-3.fc45 100% |  13.0 MiB/s | 959.0 KiB |  00m00s
[  7/108] Installing gettext-envsubst-0 100% |   1.8 MiB/s | 107.9 KiB |  00m00s
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[  9/108] Installing gettext-0:1.0-4.fc 100% | 100.7 MiB/s |  18.7 MiB |  00m00s
[ 10/108] Installing gettext-common-dev 100% | 116.5 MiB/s | 596.5 KiB |  00m00s
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[ 12/108] Installing groff-base-0:1.24. 100% |  40.5 MiB/s |   4.9 MiB |  00m00s
[ 13/108] Installing ncurses-0:6.6-3.fc 100% |  13.5 MiB/s | 964.6 KiB |  00m00s
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[ 50/108] Installing perl-base-0:2.27-5 100% |   6.3 MiB/s |  13.0 KiB |  00m00s
[ 51/108] Installing perl-overloading-0 100% |   2.7 MiB/s |   5.5 KiB |  00m00s
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[ 53/108] Installing perl-Fcntl-0:1.20- 100% |  30.4 MiB/s |  93.4 KiB |  00m00s
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[ 61/108] Installing perl-Errno-0:1.39- 100% |   4.3 MiB/s |   8.8 KiB |  00m00s
[ 62/108] Installing perl-MIME-Base64-0 100% |  23.4 MiB/s |  95.8 KiB |  00m00s
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[ 67/108] Installing perl-DynaLoader-0: 100% |  10.6 MiB/s |  32.5 KiB |  00m00s
[ 68/108] Installing perl-PathTools-0:3 100% |  31.9 MiB/s | 228.4 KiB |  00m00s
[ 69/108] Installing perl-Exporter-0:5. 100% |  18.1 MiB/s |  55.5 KiB |  00m00s
[ 70/108] Installing perl-Carp-0:1.54-5 100% |   6.7 MiB/s |  47.7 KiB |  00m00s
[ 71/108] Installing perl-libs-4:5.44.0 100% |  76.0 MiB/s |  12.9 MiB |  00m00s
[ 72/108] Installing perl-interpreter-4 100% |   2.9 MiB/s | 177.3 KiB |  00m00s
[ 73/108] Installing perl-File-Find-0:1 100% |  20.8 MiB/s |  42.5 KiB |  00m00s
[ 74/108] Installing perl-File-Copy-0:2 100% |   9.9 MiB/s |  20.2 KiB |  00m00s
[ 75/108] Installing perl-File-Compare- 100% |   3.0 MiB/s |   6.2 KiB |  00m00s
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[ 77/108] Installing perl-threads-share 100% |  25.8 MiB/s | 105.5 KiB |  00m00s
[ 78/108] Installing perl-Thread-Queue- 100% |  14.8 MiB/s |  30.4 KiB |  00m00s
[ 79/108] Installing perl-ExtUtils-Comm 100% |   5.0 MiB/s |  10.2 KiB |  00m00s
[ 80/108] Installing perl-ExtUtils-Mani 100% |  28.1 MiB/s |  86.3 KiB |  00m00s
[ 81/108] Installing perl-Devel-PPPort- 100% |  96.1 MiB/s | 984.1 KiB |  00m00s
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[ 83/108] Installing perl-ExtUtils-Cons 100% |  28.6 MiB/s |  87.7 KiB |  00m00s
[ 84/108] Installing perl-Benchmark-0:1 100% |  12.0 MiB/s |  36.8 KiB |  00m00s
[ 85/108] Installing perl-Test-Harness- 100% |   7.3 MiB/s | 583.7 KiB |  00m00s
[ 86/108] Installing perl-Hash-Util-Fie 100% |  26.4 MiB/s | 108.1 KiB |  00m00s
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[ 88/108] Installing perl-fields-0:2.27 100% |   6.0 MiB/s |  12.3 KiB |  00m00s
[ 89/108] Installing perl-ExtUtils-Pars 100% |  10.6 MiB/s | 729.2 KiB |  00m00s
[ 90/108] Installing perl-lib-0:0.65-52 100% |   4.4 MiB/s |   8.9 KiB |  00m00s
[ 91/108] Installing perl-AutoSplit-0:5 100% |  11.5 MiB/s |  23.6 KiB |  00m00s
[ 92/108] Installing perl-ExtUtils-Make 100% |  10.6 MiB/s | 750.6 KiB |  00m00s
[ 93/108] Installing perl-ExtUtils-Inst 100% |  21.3 MiB/s |  87.2 KiB |  00m00s
[ 94/108] Installing python3-pyparsing- 100% |  79.9 MiB/s |   1.0 MiB |  00m00s
[ 95/108] Installing systemtap-sdt-dtra 100% |   3.1 MiB/s | 187.1 KiB |  00m00s
[ 96/108] Installing systemtap-sdt-deve 100% |  46.5 MiB/s | 190.7 KiB |  00m00s
[ 97/108] Installing perl-devel-4:5.44. 100% |  45.4 MiB/s |   4.1 MiB |  00m00s
[ 98/108] Installing cmake-filesystem-0 100% |   1.3 MiB/s |   9.4 KiB |  00m00s
[ 99/108] Installing gsl-0:2.8-4.fc45.p 100% |  48.1 MiB/s |   4.4 MiB |  00m00s
[100/108] Installing emacs-filesystem-1 100% | 358.1 KiB/s |   1.1 KiB |  00m00s
[101/108] Installing autoconf-0:2.73-4. 100% |  34.7 MiB/s |   2.9 MiB |  00m00s
[102/108] Installing automake-0:1.18.1- 100% |  22.7 MiB/s |   1.8 MiB |  00m00s
[103/108] Installing gsl-devel-0:2.8-4. 100% |  19.6 MiB/s |   1.7 MiB |  00m00s
[104/108] Installing zlib-ng-compat-dev 100% |  35.3 MiB/s | 108.6 KiB |  00m00s
[105/108] Installing perl-ExtUtils-Embe 100% |   7.9 MiB/s |  16.1 KiB |  00m00s
[106/108] Installing perl-FindBin-0:1.5 100% |   7.0 MiB/s |   7.2 KiB |  00m00s
[107/108] Installing htslib-devel-0:1.2 100% |  65.8 MiB/s | 471.4 KiB |  00m00s
[108/108] Installing htslib-tools-0:1.2 100% |  13.2 MiB/s |   4.1 MiB |  00m00s
Warning: skipped OpenPGP checks for 6 packages from repository: copr_base
Complete!
Building target platforms: ppc64le
Building for target ppc64le
setting SOURCE_DATE_EPOCH=1784678400
Wrote: /builddir/build/SRPMS/bcftools-1.24-2.fc46.src.rpm
Updating and loading repositories:
 fedora                                 100% |  15.4 KiB/s |   6.9 KiB |  00m00s
 Additional repo copr_tstellar_fedora_c 100% |   4.5 KiB/s |   1.5 KiB |  00m00s
 Additional repo copr_fedora_llvm_team_ 100% |   4.8 KiB/s |   1.5 KiB |  00m00s
 Copr repository                        100% |   4.8 KiB/s |   1.5 KiB |  00m00s
Repositories loaded.
Package "autoconf-2.73-4.fc45.noarch" is already installed.
Package "automake-1.18.1-5.fc45.noarch" is already installed.
Package "gcc-16.2.1-2.fc46.1.ppc64le" is already installed.
Package "gsl-devel-2.8-4.fc45.ppc64le" is already installed.
Package "htslib-devel-1.24-1.fc46.ppc64le" is already installed.
Package "htslib-tools-1.24-1.fc46.ppc64le" is already installed.
Package "make-1:4.4.1-13.fc46.ppc64le" is already installed.
Package "perl-ExtUtils-Embed-1.35-527.fc45.noarch" is already installed.
Package "perl-File-Temp-1:0.231.200-527.fc45.noarch" is already installed.
Package "perl-FindBin-1.54-527.fc45.noarch" is already installed.
Package "perl-Getopt-Long-1:2.58-527.fc45.noarch" is already installed.
Package "perl-interpreter-4:5.44.0-527.fc45.ppc64le" is already installed.
Package "zlib-ng-compat-devel-2.3.3-6.fc46.ppc64le" is already installed.

Nothing to do.
Finish: build setup for bcftools-1.24-2.fc46.src.rpm
Start: rpmbuild bcftools-1.24-2.fc46.src.rpm
Building target platforms: ppc64le
Building for target ppc64le
setting SOURCE_DATE_EPOCH=1784678400
Executing(mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.XvGswG
Creating(rpmbuild.env): /builddir/build/BUILD/bcftools-1.24-build/rpmbuild.env
  RPM_SOURCE_DIR="/builddir/build/SOURCES"
  RPM_BUILD_DIR="/builddir/build/BUILD/bcftools-1.24-build"
  RPM_OPT_FLAGS="-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection"
  RPM_LD_FLAGS="-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1   "
  RPM_ARCH="ppc64le"
  RPM_OS="linux"
  RPM_BUILD_NCPUS="5"
  RPM_SPECPARTS_DIR="/builddir/build/BUILD/bcftools-1.24-build/SPECPARTS"
  export RPM_SOURCE_DIR RPM_BUILD_DIR RPM_OPT_FLAGS RPM_ARCH RPM_OS RPM_BUILD_NCPUS RPM_SPECPARTS_DIR RPM_LD_FLAGS
  RPM_DOC_DIR="/usr/share/doc"
  export RPM_DOC_DIR
  RPM_PACKAGE_NAME="bcftools"
  RPM_PACKAGE_VERSION="1.24"
  RPM_PACKAGE_RELEASE="2.fc46"
  export RPM_PACKAGE_NAME RPM_PACKAGE_VERSION RPM_PACKAGE_RELEASE
  LANG=C.UTF-8
  export LANG
  unset CDPATH DISPLAY ||:
  unset DEBUGINFOD_URLS ||:
  unset RPM_CONFIG_DIR ||:
  RPM_BUILD_ROOT="/builddir/build/BUILD/bcftools-1.24-build/BUILDROOT"
  export RPM_BUILD_ROOT
  
  PKG_CONFIG_PATH="${PKG_CONFIG_PATH}:/usr/lib64/pkgconfig:/usr/share/pkgconfig"
  export PKG_CONFIG_PATH
  CONFIG_SITE=${CONFIG_SITE:-NONE}
  export CONFIG_SITE
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.vU7tht
+ umask 022
+ cd /builddir/build/BUILD/bcftools-1.24-build
+ cd /builddir/build/BUILD/bcftools-1.24-build
+ rm -rf bcftools-1.24
+ /usr/bin/rpmuncompress -x /builddir/build/SOURCES/bcftools-1.24.tar.bz2
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd bcftools-1.24
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ sed -i '1s|/usr/bin/env perl|/usr/bin/perl|' misc/color-chrs.pl misc/demo-flt.pl misc/run-roh.pl misc/vcfutils.pl misc/plot-vcfstats
+ sed -i '1s|/usr/bin/env python3\{0,1\}|/usr/bin/python3|' misc/gff2gff.py misc/guess-ploidy.py misc/plot-roh.py
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.VuN7Bq
+ umask 022
+ cd /builddir/build/BUILD/bcftools-1.24-build
+ CFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection  '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection  '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1   '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=clang
+ export CC
+ CXX=clang++
+ export CXX
+ cd bcftools-1.24
+ autoreconf -fiv
autoreconf: export WARNINGS=
autoreconf: Entering directory '.'
autoreconf: configure.ac: no obvious need to run autopoint
autoreconf: running: aclocal --force 
autoreconf: configure.ac: tracing
autoreconf: configure.ac: subdirectory $HTSDIR not present
autoreconf: configure.ac: not using Libtool
autoreconf: configure.ac: not using Intltool
autoreconf: configure.ac: not using Gtkdoc
autoreconf: configure.ac: no need to run autopoint (confirmed)
autoreconf: running: /usr/bin/autoconf --force
configure.ac:94: warning: _AC_CONFIG_SUBDIRS: you should use literals
./lib/autoconf/status.m4:1100: AC_CONFIG_SUBDIRS is expanded from...
m4/ax_with_htslib.m4:55: AX_WITH_HTSLIB is expanded from...
configure.ac:94: the top level
autoreconf: running: /usr/bin/autoheader --force
autoreconf: configure.ac: not using Automake
autoreconf: configure.ac: not running make: --make not given
autoreconf: Leaving directory '.'
+ CFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection  '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection  '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1   '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=clang
+ export CC
+ CXX=clang++
+ export CXX
+ '[' '-flto=thin -ffat-lto-objectsx' '!=' x ']'
++ find . -type f -name configure -print
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup '/lt_cv_sys_global_symbol_to_cdecl=/s#(".*"|'\''.*'\'')#"sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./htslib-1.24/configure
+ diff -u ./htslib-1.24/configure.backup ./htslib-1.24/configure
+ mv ./htslib-1.24/configure.backup ./htslib-1.24/configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./htslib-1.24/configure
+ diff -u ./htslib-1.24/configure.backup ./htslib-1.24/configure
+ mv ./htslib-1.24/configure.backup ./htslib-1.24/configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./htslib-1.24/configure
+ diff -u ./htslib-1.24/configure.backup ./htslib-1.24/configure
+ mv ./htslib-1.24/configure.backup ./htslib-1.24/configure
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./htslib-1.24/configure
+ diff -u ./htslib-1.24/configure.backup ./htslib-1.24/configure
+ mv ./htslib-1.24/configure.backup ./htslib-1.24/configure
+ /usr/bin/sed -r --in-place=.backup '/lt_cv_sys_global_symbol_to_cdecl=/s#(".*"|'\''.*'\'')#"sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./htslib-1.24/configure
+ diff -u ./htslib-1.24/configure.backup ./htslib-1.24/configure
+ mv ./htslib-1.24/configure.backup ./htslib-1.24/configure
+ '[' 1 = 1 ']'
+++ dirname ./configure
++ find . -name config.guess -o -name config.sub
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./htslib-1.24/config.guess
+ '[' -f /usr/lib/rpm/redhat/config.guess ']'
+ /usr/bin/rm -f ./htslib-1.24/config.guess
++ basename ./htslib-1.24/config.guess
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./htslib-1.24/config.guess
'/usr/lib/rpm/redhat/config.guess' -> './htslib-1.24/config.guess'
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./htslib-1.24/config.sub
+ '[' -f /usr/lib/rpm/redhat/config.sub ']'
+ /usr/bin/rm -f ./htslib-1.24/config.sub
++ basename ./htslib-1.24/config.sub
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./htslib-1.24/config.sub
'/usr/lib/rpm/redhat/config.sub' -> './htslib-1.24/config.sub'
+ '[' 1 = 1 ']'
+ '[' x '!=' 'x-Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg' ']'
++ find . -name ltmain.sh
++ grep -q runstatedir=DIR ./configure
++ echo --runstatedir=/run
+ ./configure --build=ppc64le-redhat-linux --host=ppc64le-redhat-linux --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/bin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --runstatedir=/run --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info 'CFLAGS=-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection' 'LDFLAGS=-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1   ' --prefix=/usr --with-htslib=system --enable-perl-filters --enable-libgsl '--with-bcf-plugin-path=/usr/local/libexec/bcftools:$(plugindir)'
checking for ppc64le-redhat-linux-gcc... clang
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether clang accepts -g... yes
checking for clang option to enable C23 features... -std=gnu23
checking for grep that handles long lines and -e... /usr/bin/grep
checking for C compiler warning flags... -Wall
checking for clang -std=gnu23 option to support large files... none needed
checking for htslib/sam.h... yes
checking for hts_version in -lhts... yes
checking shared library type... plain .so
checking for library containing dlopen... none required
checking if the compiler accepts -rdynamic... yes
checking for zlib.h... yes
checking for inflate in -lz... yes
checking for gsl/gsl_version.h... yes
checking for library containing cblas_dgemm... -lgslcblas
checking for gsl_multifit_gradient in -lgsl... yes
configure: removing -specs=...redhat-hardened... from Perl options
checking for library containing Perl_call_pv... -lperl
checking for library containing regcomp... none required
configure: creating ./config.status
config.status: creating config.mk
config.status: creating config.h
configure: License has been changed to GPL.

Linking against the GNU scientific library requires that the resulting
binary is licensed using the GNU General Public License.  In particular,
this means you will have to follow the terms of this license in order
to distribute binary copies.  For more information see the INSTALL file.

Text of the GNU General Public License can be found in the LICENSE file,
or at http://www.gnu.org/copyleft/gpl.html

Information on the GNU Scientific Library, including the rationale for
its choice of license can be found at https://www.gnu.org/software/gsl/

+ /usr/bin/make -O -j5 V=1 VERBOSE=1
echo '#define BCFTOOLS_VERSION "1.24"' > version.h
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o tabix.o tabix.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfindex.o vcfindex.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfisec.o vcfisec.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfquery.o vcfquery.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcffilter.o vcffilter.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfsom.o vcfsom.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfgtcheck.o vcfgtcheck.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfstats.o vcfstats.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfview.o vcfview.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfroh.o vcfroh.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfconcat.o vcfconcat.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfnorm.o vcfnorm.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfcall.o vcfcall.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcmp.o vcmp.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -D_REENTRANT -D_GNU_SOURCE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fwrapv -fno-strict-aliasing -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/lib64/perl5/CORE -c -o filter.o filter.c
clang: warning: argument unused during compilation: '-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1' [-Wunused-command-line-argument]
warning: unknown warning option '-Wno-complain-wrong-lang'; did you mean '-Wno-c++11-long-long'? [-Wunknown-warning-option]
1 warning generated.
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o gvcf.o gvcf.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfmerge.o vcfmerge.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o mcall.o mcall.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o tsv2vcf.o tsv2vcf.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o reheader.o reheader.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfhead.o vcfhead.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfconvert.o vcfconvert.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfcnv.o vcfcnv.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfannotate.o vcfannotate.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o bin.o bin.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o HMM.o HMM.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o ploidy.o ploidy.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o convert.o convert.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o version.o version.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o hclust.o hclust.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o smpl_ilist.o smpl_ilist.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o consensus.o consensus.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o regidx.o regidx.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfbuf.o vcfbuf.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o mpileup.o mpileup.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o bam2bcf.o bam2bcf.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o bam2bcf_indel.o bam2bcf_indel.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o bam2bcf_iaux.o bam2bcf_iaux.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfsort.o vcfsort.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o read_consensus.o read_consensus.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o bam_sample.o bam_sample.c
bam_sample.c:172:15: warning: initializing 'char *' with an expression of type 'const char *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
  172 |         char *eol = strchr(q + 3, '\n');
      |               ^     ~~~~~~~~~~~~~~~~~~~
1 warning generated.
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o bam2bcf_edlib.o bam2bcf_edlib.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o cols.o cols.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o dist.o dist.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o extsort.o extsort.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o em.o em.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o ccall.o ccall.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o kmin.o kmin.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o str_finder.o str_finder.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o csq.o csq.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o abuf.o abuf.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o edlib.o edlib.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o mpileup2/mpileup.o mpileup2/mpileup.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o prob1.o prob1.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o test/test-rbuf.o test/test-rbuf.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o gff.o gff.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.   -DPLUGINPATH='"/usr/local/libexec/bcftools:/usr/libexec/bcftools"' -c -o vcfplugin.o vcfplugin.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o peakfit.o peakfit.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o test/test-regidx.o test/test-regidx.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o polysomy.o polysomy.c
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/GTsubset.so version.c plugins/GTsubset.c  
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/GTisec.so version.c plugins/GTisec.c  
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/add-variantkey.so version.c plugins/add-variantkey.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/af-dist.so bin.c version.c plugins/af-dist.c  
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/allele-length.so version.c plugins/allele-length.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/check-ploidy.so version.c plugins/check-ploidy.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/check-sparsity.so version.c plugins/check-sparsity.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/counts.so version.c plugins/counts.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/contrast.so version.c plugins/contrast.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/color-chrs.so HMM.c version.c plugins/color-chrs.c  
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/fill-AN-AC.so version.c plugins/fill-AN-AC.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/dosage.so version.c plugins/dosage.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/ad-bias.so convert.c version.c plugins/ad-bias.c  
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/fixref.so version.c plugins/fixref.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/frameshifts.so version.c plugins/frameshifts.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/fixploidy.so ploidy.c regidx.c version.c plugins/fixploidy.c  
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/guess-ploidy.so version.c plugins/guess-ploidy.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/impute-info.so version.c plugins/impute-info.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/gvcfz.so version.c plugins/gvcfz.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/fill-tags.so version.c plugins/fill-tags.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/missing2ref.so version.c plugins/missing2ref.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/isecGT.so smpl_ilist.c version.c plugins/isecGT.c  
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/indel-stats.so version.c plugins/indel-stats.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/parental-origin.so version.c plugins/parental-origin.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/mendelian2.so version.c plugins/mendelian2.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/prune.so version.c plugins/prune.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/remove-overlaps.so version.c plugins/remove-overlaps.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/scatter.so version.c plugins/scatter.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/smpl-stats.so version.c plugins/smpl-stats.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/setGT.so version.c plugins/setGT.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/tag2tag.so version.c plugins/tag2tag.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/split.so version.c plugins/split.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/split-vep.so version.c plugins/split-vep.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/trio-switch-rate.so version.c plugins/trio-switch-rate.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/trio-stats.so version.c plugins/trio-stats.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/variant-distance.so version.c plugins/variant-distance.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -D_REENTRANT -D_GNU_SOURCE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fwrapv -fno-strict-aliasing -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/lib64/perl5/CORE -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/fill-from-fasta.so filter.c version.c plugins/fill-from-fasta.c  
clang: warning: argument unused during compilation: '-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1' [-Wunused-command-line-argument]
warning: unknown warning option '-Wno-complain-wrong-lang'; did you mean '-Wno-c++11-long-long'? [-Wunknown-warning-option]
1 warning generated.
warning: unknown warning option '-Wno-complain-wrong-lang'; did you mean '-Wno-c++11-long-long'? [-Wunknown-warning-option]
1 warning generated.
warning: unknown warning option '-Wno-complain-wrong-lang'; did you mean '-Wno-c++11-long-long'? [-Wunknown-warning-option]
1 warning generated.
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/variantkey-hex.so version.c plugins/variantkey-hex.c 
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.   -DUSE_GPL -c -o main.o main.c
clang -std=gnu23 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o test/test-rbuf test/test-rbuf.o -lz  
clang -std=gnu23  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o test/test-regidx test/test-regidx.o regidx.o -lhts -lpthread -lz  
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/vrfs.so version.c plugins/vrfs.c  
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/vcf2table.so version.c plugins/vcf2table.c 
plugins/vcf2table.c:1066:13: warning: initializing 'char *' with an expression of type 'const char *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
 1066 |       char* eq = strchr(info, '=');
      |             ^    ~~~~~~~~~~~~~~~~~
1 warning generated.
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/trio-dnm3.so version.c plugins/trio-dnm3.c 
clang -std=gnu23 -rdynamic  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o bcftools main.o vcfindex.o tabix.o vcfstats.o vcfisec.o vcfmerge.o vcfquery.o vcffilter.o filter.o vcfsom.o vcfnorm.o vcfgtcheck.o vcfview.o vcfannotate.o vcfroh.o vcfconcat.o vcfcall.o mcall.o vcmp.o gvcf.o reheader.o convert.o vcfconvert.o tsv2vcf.o vcfcnv.o vcfhead.o HMM.o consensus.o ploidy.o bin.o hclust.o version.o regidx.o smpl_ilist.o csq.o vcfbuf.o mpileup.o bam2bcf.o bam2bcf_indel.o bam2bcf_iaux.o bam2bcf_edlib.o read_consensus.o bam_sample.o vcfsort.o cols.o extsort.o dist.o abuf.o ccall.o em.o prob1.o kmin.o str_finder.o gff.o edlib.o mpileup2/mpileup.o polysomy.o peakfit.o vcfplugin.o -lhts -lm -lz   -lgsl -lgslcblas -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -fstack-protector-strong -L/usr/local/lib -L/usr/lib64/perl5/CORE -lperl -lpthread -lresolv -ldl -lm -lcrypt -lutil -lc -lpthread
clang: warning: argument unused during compilation: '-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1' [-Wunused-command-line-argument]
clang: warning: argument unused during compilation: '-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1' [-Wunused-command-line-argument]
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.a8VU95
+ umask 022
+ cd /builddir/build/BUILD/bcftools-1.24-build
+ '[' /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT '!=' / ']'
+ rm -rf /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT
++ dirname /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT
+ mkdir -p /builddir/build/BUILD/bcftools-1.24-build
+ mkdir /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT
+ CFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection  '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection  '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1   '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=clang
+ export CC
+ CXX=clang++
+ export CXX
+ cd bcftools-1.24
+ /usr/bin/make install DESTDIR=/builddir/build/BUILD/bcftools-1.24-build/BUILDROOT 'INSTALL=/usr/bin/install -p'
mkdir -p -m 755 /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT/usr/bin /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT/usr/share/man/man1 /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT/usr/libexec/bcftools
/usr/bin/install -p bcftools /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT/usr/bin
/usr/bin/install -p misc/color-chrs.pl misc/gff2gff misc/gff2gff.py misc/guess-ploidy.py misc/plot-vcfstats misc/plot-roh.py misc/roh-viz misc/run-roh.pl misc/vcfutils.pl misc/vrfs-variances /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT/usr/bin
/usr/bin/install -p -m 644 doc/bcftools.1 /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT/usr/share/man/man1
/usr/bin/install -p plugins/*.so /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT/usr/libexec/bcftools
+ /usr/bin/find-debuginfo -j5 --strict-build-id -m -i --build-id-seed 1.24-2.fc46 --unique-debug-suffix -1.24-2.fc46.ppc64le --unique-debug-src-base bcftools-1.24-2.fc46.ppc64le --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 --remove-section .gnu.build.attributes -S debugsourcefiles.list /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24
find-debuginfo: starting
Extracting debug info from 42 files
DWARF-compressing 42 files
dwz: ./usr/bin/bcftools-1.24-2.fc46.ppc64le.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/GTisec.so-1.24-2.fc46.ppc64le.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/GTsubset.so-1.24-2.fc46.ppc64le.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/ad-bias.so-1.24-2.fc46.ppc64le.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/add-variantkey.so-1.24-2.fc46.ppc64le.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/af-dist.so-1.24-2.fc46.ppc64le.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/allele-length.so-1.24-2.fc46.ppc64le.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/check-ploidy.so-1.24-2.fc46.ppc64le.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/check-sparsity.so-1.24-2.fc46.ppc64le.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/color-chrs.so-1.24-2.fc46.ppc64le.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/contrast.so-1.24-2.fc46.ppc64le.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/counts.so-1.24-2.fc46.ppc64le.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/dosage.so-1.24-2.fc46.ppc64le.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/fill-AN-AC.so-1.24-2.fc46.ppc64le.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/fill-from-fasta.so-1.24-2.fc46.ppc64le.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/fill-tags.so-1.24-2.fc46.ppc64le.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/fixploidy.so-1.24-2.fc46.ppc64le.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/fixref.so-1.24-2.fc46.ppc64le.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/frameshifts.so-1.24-2.fc46.ppc64le.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/guess-ploidy.so-1.24-2.fc46.ppc64le.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/gvcfz.so-1.24-2.fc46.ppc64le.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/impute-info.so-1.24-2.fc46.ppc64le.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/indel-stats.so-1.24-2.fc46.ppc64le.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/isecGT.so-1.24-2.fc46.ppc64le.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/mendelian2.so-1.24-2.fc46.ppc64le.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/missing2ref.so-1.24-2.fc46.ppc64le.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/parental-origin.so-1.24-2.fc46.ppc64le.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/prune.so-1.24-2.fc46.ppc64le.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/remove-overlaps.so-1.24-2.fc46.ppc64le.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/scatter.so-1.24-2.fc46.ppc64le.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/setGT.so-1.24-2.fc46.ppc64le.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/smpl-stats.so-1.24-2.fc46.ppc64le.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/split-vep.so-1.24-2.fc46.ppc64le.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/split.so-1.24-2.fc46.ppc64le.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/tag2tag.so-1.24-2.fc46.ppc64le.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/trio-dnm3.so-1.24-2.fc46.ppc64le.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/trio-stats.so-1.24-2.fc46.ppc64le.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/trio-switch-rate.so-1.24-2.fc46.ppc64le.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/variant-distance.so-1.24-2.fc46.ppc64le.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/variantkey-hex.so-1.24-2.fc46.ppc64le.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/vcf2table.so-1.24-2.fc46.ppc64le.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/vrfs.so-1.24-2.fc46.ppc64le.debug: Unknown debugging section .debug_addr
dwz: Too few files for multifile optimization
sepdebugcrcfix: Updated 0 CRC32s, 42 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/bcftools-1.24-2.fc46.ppc64le
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ COMPRESS='gzip -9 -n'
+ COMPRESS_EXT=.gz
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
mangling shebang in /usr/bin/vrfs-variances from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/bin/roh-viz from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/bin/gff2gff from /usr/bin/env perl to #!/usr/bin/perl
+ /usr/lib/rpm/brp-remove-la-files
+ /usr/lib/rpm/redhat/brp-python-rpm-in-distinfo
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j5
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/bin/add-det --brp -j5 /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT
Scanned 19 directories and 230 files,
    processed 1 inodes,
    0 modified (0 replaced + 0 rewritten),
    0 unsupported format, 0 errors
+ /usr/bin/linkdupes --brp /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT/usr
Scanned 18 directories and 230 files,
    considered 230 files, read 6 files, linked 0 files, 0 errors
    sum of sizes of linked files: 0 bytes
Reading /builddir/build/BUILD/bcftools-1.24-build/SPECPARTS/rpm-debuginfo.specpart
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.6GHc3E
+ umask 022
+ cd /builddir/build/BUILD/bcftools-1.24-build
+ CFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection  '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection  '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1   '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=clang
+ export CC
+ CXX=clang++
+ export CXX
+ cd bcftools-1.24
+ ldd bcftools
+ grep -E '/lib(64)?(/lp64d)?/libhts\.so\.'
	libhts.so.3 => /lib64/libhts.so.3 (0x00007fffb8eb0000)
+ make test
./test/test-rbuf
Inserted 1-9 starting at offset 5:
  5  6  7  8  9  0  1  2  3
  1  2  3  4  5  6  7  8  9
4th is 4
Deleting 1-2:
  7  8  9  0  1  2  3
  3  4  5  6  7  8  9
Prepending 0-8:
  8  9  0  1  2  3  4  5  6  7
  8  7  6  5  4  3  2  1  0  3
Expanding:
  8  9 10 11 12 13 14 15 16 17
  8  7  6  5  4  3  2  1  0  3
./test/test-regidx
REF_PATH=: ./test/test.pl --plugins --exec bgzip= --exec tabix= --htsdir= ${TEST_OPTS:-}
test_usage:
	bcftools
./test/test.pl: module IO::Pty not found; skipping usage tests
test_tabix:
	tabix /tmp/teAXFodfS9/merge.a.vcf.gz 2:3199812-3199812
.. ok

test_tabix:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H /tmp/teAXFodfS9/merge.a.bcf 2:3199812-3199812
.. ok

test_tabix:
	tabix /tmp/teAXFodfS9/merge.a.vcf.gz 1:3000151-3000151
.. ok

test_tabix:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H /tmp/teAXFodfS9/merge.a.bcf 1:3000151-3000151
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H /tmp/teAXFodfS9/large_chrom_csi_limit.vcf.gz chr20:1-2147483647
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H /tmp/teAXFodfS9/large_chrom_csi_limit.bcf chr20:1-2147483647
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H /tmp/teAXFodfS9/large_chrom_csi_limit.bcf chr20:1-2147483647
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H /tmp/teAXFodfS9/large_chrom_csi_limit.vcf.gz chr20:1-2147483647
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H /tmp/teAXFodfS9/large_chrom_csi_limit.bcf chr20:1-2147483647
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H /tmp/teAXFodfS9/large_chrom_csi_limit.vcf.gz chr20
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H /tmp/teAXFodfS9/large_chrom_csi_limit.bcf chr20
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H /tmp/teAXFodfS9/large_chrom_csi_limit.bcf chr20
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H /tmp/teAXFodfS9/large_chrom_csi_limit.vcf.gz chr20
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H /tmp/teAXFodfS9/large_chrom_csi_limit.bcf chr20
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools index -s /tmp/teAXFodfS9/idx.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools index -s /tmp/teAXFodfS9/idx.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools index -s /tmp/teAXFodfS9/idx.bcf
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools index -n /tmp/teAXFodfS9/idx.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools index -n /tmp/teAXFodfS9/idx.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools index -n /tmp/teAXFodfS9/idx.vcf.gz.csi
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools index -n /tmp/teAXFodfS9/idx.bcf
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools index -n /tmp/teAXFodfS9/idx.bcf.csi
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools index -s /tmp/teAXFodfS9/empty.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools index -s /tmp/teAXFodfS9/empty.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools index -s /tmp/teAXFodfS9/empty.bcf
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools index -n /tmp/teAXFodfS9/empty.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools index -n /tmp/teAXFodfS9/empty.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools index -n /tmp/teAXFodfS9/empty.vcf.gz.csi
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools index -n /tmp/teAXFodfS9/empty.bcf
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools index -n /tmp/teAXFodfS9/empty.bcf.csi
.. ok

test_vcf_check:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools stats -s - /tmp/teAXFodfS9/check.vcf.gz | grep -v '^# The command' | grep -v '^# This' | grep -v '^ID	'
.. ok

test_vcf_check:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/check.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools stats -s - | grep -v '^# The command' | grep -v '^# This' | grep -v '^ID	'
.. ok

test_vcf_check_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/misc/plot-vcfstats -m /tmp/teAXFodfS9/check.1.chk /tmp/teAXFodfS9/check.2.chk /tmp/teAXFodfS9/check.3.chk /tmp/teAXFodfS9/check.4.chk | grep -v 'plot-vcfstats' | grep -v '^# The command' | grep -v '^# This' | grep -v '^ID	'
.. ok

test_vcf_stats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools stats -s A,B  /tmp/teAXFodfS9/stats-smpl-order.vcf.gz | grep -v '^#' | grep -v '^ID	'  | LC_ALL=C sort
.. ok

test_vcf_stats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools stats -s B,A  /tmp/teAXFodfS9/stats-smpl-order.vcf.gz | grep -v '^#' | grep -v '^ID	'  | LC_ALL=C sort
.. ok

test_vcf_stats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools stats -s -  /tmp/teAXFodfS9/stats.a.vcf.gz /tmp/teAXFodfS9/stats.b.vcf.gz | grep -v '^#' | grep -v '^ID	' 
.. ok

test_vcf_stats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools stats -s B  /tmp/teAXFodfS9/stats.a.vcf.gz /tmp/teAXFodfS9/stats.b.vcf.gz | grep -v '^#' | grep -v '^ID	' 
.. ok

test_vcf_stats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools stats -s -  /tmp/teAXFodfS9/stats.counts.vcf.gz | grep -v '^#' | grep -v '^ID	' 
.. ok

test_vcf_stats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools stats -s - -i 'type="snp"'  /tmp/teAXFodfS9/stats.counts.vcf.gz | grep -v '^#' | grep -v '^ID	' 
.. ok

test_vcf_stats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools stats -s -  /tmp/teAXFodfS9/stats.vaf.vcf.gz | grep -v '^#' | grep -v '^ID	' 
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools isec -n =2 -w 2 --no-version /tmp/teAXFodfS9/isec.match-id.1.1.vcf.gz /tmp/teAXFodfS9/isec.match-id.1.2.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools isec -n =2 -w 2 -c id --no-version /tmp/teAXFodfS9/isec.match-id.1.1.vcf.gz /tmp/teAXFodfS9/isec.match-id.1.2.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools isec -n =2 /tmp/teAXFodfS9/isec.a.vcf.gz /tmp/teAXFodfS9/isec.b.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools isec -n =2 -i"STRLEN(REF)==2" /tmp/teAXFodfS9/isec.a.vcf.gz /tmp/teAXFodfS9/isec.b.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools isec -n =2 -c both /tmp/teAXFodfS9/isec.a.vcf.gz /tmp/teAXFodfS9/isec.b.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools isec -n =2 -c any /tmp/teAXFodfS9/isec.a.vcf.gz /tmp/teAXFodfS9/isec.b.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools isec -C -c any /tmp/teAXFodfS9/isec.a.vcf.gz /tmp/teAXFodfS9/isec.b.vcf.gz
.. ok

test_vcf_isec2:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools isec --no-version   -T /tmp/teAXFodfS9/isec.tab.gz /tmp/teAXFodfS9/isec.a.vcf.gz
.. ok

test_vcf_isec2:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools isec -Ob  -T /tmp/teAXFodfS9/isec.tab.gz /tmp/teAXFodfS9/isec.a.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools isec -n +1 -r 20:100,20:140,12:55,20:140,20:100 /tmp/teAXFodfS9/isec-miss.1.1.vcf.gz /tmp/teAXFodfS9/isec-miss.1.2.vcf.gz /tmp/teAXFodfS9/isec-miss.1.3.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools isec -R /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/isec-miss.1.regs.txt -n +1 /tmp/teAXFodfS9/isec-miss.1.1.vcf.gz /tmp/teAXFodfS9/isec-miss.1.2.vcf.gz /tmp/teAXFodfS9/isec-miss.1.3.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools isec -n +1 -r 20:100,20:140,12:55,20:140,20:100 /tmp/teAXFodfS9/isec-miss.2.1.vcf.gz /tmp/teAXFodfS9/isec-miss.2.2.vcf.gz /tmp/teAXFodfS9/isec-miss.2.3.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools isec -R /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/isec-miss.1.regs.txt -n +1 /tmp/teAXFodfS9/isec-miss.2.1.vcf.gz /tmp/teAXFodfS9/isec-miss.2.2.vcf.gz /tmp/teAXFodfS9/isec-miss.2.3.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/teAXFodfS9/merge.exact.a.vcf.gz /tmp/teAXFodfS9/merge.exact.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/teAXFodfS9/merge.exact.a.vcf.gz /tmp/teAXFodfS9/merge.exact.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/teAXFodfS9/merge.exact.a.bcf /tmp/teAXFodfS9/merge.exact.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/teAXFodfS9/merge.exact.a.bcf /tmp/teAXFodfS9/merge.exact.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -m exact /tmp/teAXFodfS9/merge.exact.a.vcf.gz /tmp/teAXFodfS9/merge.exact.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -m exact /tmp/teAXFodfS9/merge.exact.a.vcf.gz /tmp/teAXFodfS9/merge.exact.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -m exact /tmp/teAXFodfS9/merge.exact.a.bcf /tmp/teAXFodfS9/merge.exact.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -m exact /tmp/teAXFodfS9/merge.exact.a.bcf /tmp/teAXFodfS9/merge.exact.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/teAXFodfS9/merge.broken-gvcf.a.vcf.gz /tmp/teAXFodfS9/merge.broken-gvcf.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/teAXFodfS9/merge.broken-gvcf.a.vcf.gz /tmp/teAXFodfS9/merge.broken-gvcf.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/teAXFodfS9/merge.broken-gvcf.a.bcf /tmp/teAXFodfS9/merge.broken-gvcf.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/teAXFodfS9/merge.broken-gvcf.a.bcf /tmp/teAXFodfS9/merge.broken-gvcf.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/teAXFodfS9/merge.symbolic.1.a.vcf.gz /tmp/teAXFodfS9/merge.symbolic.1.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/teAXFodfS9/merge.symbolic.1.a.vcf.gz /tmp/teAXFodfS9/merge.symbolic.1.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/teAXFodfS9/merge.symbolic.1.a.bcf /tmp/teAXFodfS9/merge.symbolic.1.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/teAXFodfS9/merge.symbolic.1.a.bcf /tmp/teAXFodfS9/merge.symbolic.1.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --merge none /tmp/teAXFodfS9/merge.multiallelics.1.a.vcf.gz /tmp/teAXFodfS9/merge.multiallelics.1.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --merge none /tmp/teAXFodfS9/merge.multiallelics.1.a.vcf.gz /tmp/teAXFodfS9/merge.multiallelics.1.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --merge none /tmp/teAXFodfS9/merge.multiallelics.1.a.bcf /tmp/teAXFodfS9/merge.multiallelics.1.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --merge none /tmp/teAXFodfS9/merge.multiallelics.1.a.bcf /tmp/teAXFodfS9/merge.multiallelics.1.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --merge both /tmp/teAXFodfS9/merge.multiallelics.1.a.vcf.gz /tmp/teAXFodfS9/merge.multiallelics.1.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --merge both /tmp/teAXFodfS9/merge.multiallelics.1.a.vcf.gz /tmp/teAXFodfS9/merge.multiallelics.1.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --merge both /tmp/teAXFodfS9/merge.multiallelics.1.a.bcf /tmp/teAXFodfS9/merge.multiallelics.1.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --merge both /tmp/teAXFodfS9/merge.multiallelics.1.a.bcf /tmp/teAXFodfS9/merge.multiallelics.1.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --merge none /tmp/teAXFodfS9/merge.12.a.vcf.gz /tmp/teAXFodfS9/merge.12.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --merge none /tmp/teAXFodfS9/merge.12.a.vcf.gz /tmp/teAXFodfS9/merge.12.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --merge none /tmp/teAXFodfS9/merge.12.a.bcf /tmp/teAXFodfS9/merge.12.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --merge none /tmp/teAXFodfS9/merge.12.a.bcf /tmp/teAXFodfS9/merge.12.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --merge both /tmp/teAXFodfS9/merge.12.a.vcf.gz /tmp/teAXFodfS9/merge.12.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --merge both /tmp/teAXFodfS9/merge.12.a.vcf.gz /tmp/teAXFodfS9/merge.12.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --merge both /tmp/teAXFodfS9/merge.12.a.bcf /tmp/teAXFodfS9/merge.12.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --merge both /tmp/teAXFodfS9/merge.12.a.bcf /tmp/teAXFodfS9/merge.12.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/teAXFodfS9/merge.phased.1.a.vcf.gz /tmp/teAXFodfS9/merge.phased.1.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/teAXFodfS9/merge.phased.1.a.vcf.gz /tmp/teAXFodfS9/merge.phased.1.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/teAXFodfS9/merge.phased.1.a.bcf /tmp/teAXFodfS9/merge.phased.1.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/teAXFodfS9/merge.phased.1.a.bcf /tmp/teAXFodfS9/merge.phased.1.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/teAXFodfS9/merge.11.a.vcf.gz /tmp/teAXFodfS9/merge.11.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/teAXFodfS9/merge.11.a.vcf.gz /tmp/teAXFodfS9/merge.11.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/teAXFodfS9/merge.11.a.bcf /tmp/teAXFodfS9/merge.11.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/teAXFodfS9/merge.11.a.bcf /tmp/teAXFodfS9/merge.11.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -i AF:join /tmp/teAXFodfS9/merge.join.a.vcf.gz /tmp/teAXFodfS9/merge.join.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -i AF:join /tmp/teAXFodfS9/merge.join.a.vcf.gz /tmp/teAXFodfS9/merge.join.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -i AF:join /tmp/teAXFodfS9/merge.join.a.bcf /tmp/teAXFodfS9/merge.join.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -i AF:join /tmp/teAXFodfS9/merge.join.a.bcf /tmp/teAXFodfS9/merge.join.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-single /tmp/teAXFodfS9/merge.LPL.a.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-single /tmp/teAXFodfS9/merge.LPL.a.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-single /tmp/teAXFodfS9/merge.LPL.a.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-single /tmp/teAXFodfS9/merge.LPL.a.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples /tmp/teAXFodfS9/merge.LPL.a.vcf.gz /tmp/teAXFodfS9/merge.LPL.b.vcf.gz /tmp/teAXFodfS9/merge.LPL.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples /tmp/teAXFodfS9/merge.LPL.a.vcf.gz /tmp/teAXFodfS9/merge.LPL.b.vcf.gz /tmp/teAXFodfS9/merge.LPL.c.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples /tmp/teAXFodfS9/merge.LPL.a.bcf /tmp/teAXFodfS9/merge.LPL.b.bcf /tmp/teAXFodfS9/merge.LPL.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples /tmp/teAXFodfS9/merge.LPL.a.bcf /tmp/teAXFodfS9/merge.LPL.b.bcf /tmp/teAXFodfS9/merge.LPL.c.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -L 1 /tmp/teAXFodfS9/merge.LPL.a.vcf.gz /tmp/teAXFodfS9/merge.LPL.b.vcf.gz /tmp/teAXFodfS9/merge.LPL.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -L 1 /tmp/teAXFodfS9/merge.LPL.a.vcf.gz /tmp/teAXFodfS9/merge.LPL.b.vcf.gz /tmp/teAXFodfS9/merge.LPL.c.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -L 1 /tmp/teAXFodfS9/merge.LPL.a.bcf /tmp/teAXFodfS9/merge.LPL.b.bcf /tmp/teAXFodfS9/merge.LPL.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -L 1 /tmp/teAXFodfS9/merge.LPL.a.bcf /tmp/teAXFodfS9/merge.LPL.b.bcf /tmp/teAXFodfS9/merge.LPL.c.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -L 2 /tmp/teAXFodfS9/merge.LPL.a.vcf.gz /tmp/teAXFodfS9/merge.LPL.b.vcf.gz /tmp/teAXFodfS9/merge.LPL.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -L 2 /tmp/teAXFodfS9/merge.LPL.a.vcf.gz /tmp/teAXFodfS9/merge.LPL.b.vcf.gz /tmp/teAXFodfS9/merge.LPL.c.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -L 2 /tmp/teAXFodfS9/merge.LPL.a.bcf /tmp/teAXFodfS9/merge.LPL.b.bcf /tmp/teAXFodfS9/merge.LPL.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -L 2 /tmp/teAXFodfS9/merge.LPL.a.bcf /tmp/teAXFodfS9/merge.LPL.b.bcf /tmp/teAXFodfS9/merge.LPL.c.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -L 3 /tmp/teAXFodfS9/merge.LPL.a.vcf.gz /tmp/teAXFodfS9/merge.LPL.b.vcf.gz /tmp/teAXFodfS9/merge.LPL.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -L 3 /tmp/teAXFodfS9/merge.LPL.a.vcf.gz /tmp/teAXFodfS9/merge.LPL.b.vcf.gz /tmp/teAXFodfS9/merge.LPL.c.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -L 3 /tmp/teAXFodfS9/merge.LPL.a.bcf /tmp/teAXFodfS9/merge.LPL.b.bcf /tmp/teAXFodfS9/merge.LPL.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -L 3 /tmp/teAXFodfS9/merge.LPL.a.bcf /tmp/teAXFodfS9/merge.LPL.b.bcf /tmp/teAXFodfS9/merge.LPL.c.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -L 4 /tmp/teAXFodfS9/merge.LPL.a.vcf.gz /tmp/teAXFodfS9/merge.LPL.b.vcf.gz /tmp/teAXFodfS9/merge.LPL.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -L 4 /tmp/teAXFodfS9/merge.LPL.a.vcf.gz /tmp/teAXFodfS9/merge.LPL.b.vcf.gz /tmp/teAXFodfS9/merge.LPL.c.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -L 4 /tmp/teAXFodfS9/merge.LPL.a.bcf /tmp/teAXFodfS9/merge.LPL.b.bcf /tmp/teAXFodfS9/merge.LPL.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -L 4 /tmp/teAXFodfS9/merge.LPL.a.bcf /tmp/teAXFodfS9/merge.LPL.b.bcf /tmp/teAXFodfS9/merge.LPL.c.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -L 5 /tmp/teAXFodfS9/merge.LPL.a.vcf.gz /tmp/teAXFodfS9/merge.LPL.b.vcf.gz /tmp/teAXFodfS9/merge.LPL.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -L 5 /tmp/teAXFodfS9/merge.LPL.a.vcf.gz /tmp/teAXFodfS9/merge.LPL.b.vcf.gz /tmp/teAXFodfS9/merge.LPL.c.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -L 5 /tmp/teAXFodfS9/merge.LPL.a.bcf /tmp/teAXFodfS9/merge.LPL.b.bcf /tmp/teAXFodfS9/merge.LPL.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -L 5 /tmp/teAXFodfS9/merge.LPL.a.bcf /tmp/teAXFodfS9/merge.LPL.b.bcf /tmp/teAXFodfS9/merge.LPL.c.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples /tmp/teAXFodfS9/merge.a.vcf.gz /tmp/teAXFodfS9/merge.b.vcf.gz /tmp/teAXFodfS9/merge.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples /tmp/teAXFodfS9/merge.a.vcf.gz /tmp/teAXFodfS9/merge.b.vcf.gz /tmp/teAXFodfS9/merge.c.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples /tmp/teAXFodfS9/merge.a.bcf /tmp/teAXFodfS9/merge.b.bcf /tmp/teAXFodfS9/merge.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples /tmp/teAXFodfS9/merge.a.bcf /tmp/teAXFodfS9/merge.b.bcf /tmp/teAXFodfS9/merge.c.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -Fx /tmp/teAXFodfS9/merge.a.vcf.gz /tmp/teAXFodfS9/merge.b.vcf.gz /tmp/teAXFodfS9/merge.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -Fx /tmp/teAXFodfS9/merge.a.vcf.gz /tmp/teAXFodfS9/merge.b.vcf.gz /tmp/teAXFodfS9/merge.c.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -Fx /tmp/teAXFodfS9/merge.a.bcf /tmp/teAXFodfS9/merge.b.bcf /tmp/teAXFodfS9/merge.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -Fx /tmp/teAXFodfS9/merge.a.bcf /tmp/teAXFodfS9/merge.b.bcf /tmp/teAXFodfS9/merge.c.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -0 /tmp/teAXFodfS9/merge.a.vcf.gz /tmp/teAXFodfS9/merge.b.vcf.gz /tmp/teAXFodfS9/merge.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -0 /tmp/teAXFodfS9/merge.a.vcf.gz /tmp/teAXFodfS9/merge.b.vcf.gz /tmp/teAXFodfS9/merge.c.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -0 /tmp/teAXFodfS9/merge.a.bcf /tmp/teAXFodfS9/merge.b.bcf /tmp/teAXFodfS9/merge.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -0 /tmp/teAXFodfS9/merge.a.bcf /tmp/teAXFodfS9/merge.b.bcf /tmp/teAXFodfS9/merge.c.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -m none /tmp/teAXFodfS9/merge.2.a.vcf.gz /tmp/teAXFodfS9/merge.2.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -m none /tmp/teAXFodfS9/merge.2.a.vcf.gz /tmp/teAXFodfS9/merge.2.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -m none /tmp/teAXFodfS9/merge.2.a.bcf /tmp/teAXFodfS9/merge.2.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -m none /tmp/teAXFodfS9/merge.2.a.bcf /tmp/teAXFodfS9/merge.2.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -m both /tmp/teAXFodfS9/merge.2.a.vcf.gz /tmp/teAXFodfS9/merge.2.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -m both /tmp/teAXFodfS9/merge.2.a.vcf.gz /tmp/teAXFodfS9/merge.2.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -m both /tmp/teAXFodfS9/merge.2.a.bcf /tmp/teAXFodfS9/merge.2.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -m both /tmp/teAXFodfS9/merge.2.a.bcf /tmp/teAXFodfS9/merge.2.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -m all /tmp/teAXFodfS9/merge.2.a.vcf.gz /tmp/teAXFodfS9/merge.2.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -m all /tmp/teAXFodfS9/merge.2.a.vcf.gz /tmp/teAXFodfS9/merge.2.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -m all /tmp/teAXFodfS9/merge.2.a.bcf /tmp/teAXFodfS9/merge.2.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -m all /tmp/teAXFodfS9/merge.2.a.bcf /tmp/teAXFodfS9/merge.2.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -i TR:sum,TA:sum,TG:sum /tmp/teAXFodfS9/merge.3.a.vcf.gz /tmp/teAXFodfS9/merge.3.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -i TR:sum,TA:sum,TG:sum /tmp/teAXFodfS9/merge.3.a.vcf.gz /tmp/teAXFodfS9/merge.3.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -i TR:sum,TA:sum,TG:sum /tmp/teAXFodfS9/merge.3.a.bcf /tmp/teAXFodfS9/merge.3.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -i TR:sum,TA:sum,TG:sum /tmp/teAXFodfS9/merge.3.a.bcf /tmp/teAXFodfS9/merge.3.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -m id /tmp/teAXFodfS9/merge.4.a.vcf.gz /tmp/teAXFodfS9/merge.4.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -m id /tmp/teAXFodfS9/merge.4.a.vcf.gz /tmp/teAXFodfS9/merge.4.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -m id /tmp/teAXFodfS9/merge.4.a.bcf /tmp/teAXFodfS9/merge.4.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -m id /tmp/teAXFodfS9/merge.4.a.bcf /tmp/teAXFodfS9/merge.4.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - /tmp/teAXFodfS9/gvcf.merge.1.vcf.gz /tmp/teAXFodfS9/gvcf.merge.2.vcf.gz /tmp/teAXFodfS9/gvcf.merge.3.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - /tmp/teAXFodfS9/gvcf.merge.1.vcf.gz /tmp/teAXFodfS9/gvcf.merge.2.vcf.gz /tmp/teAXFodfS9/gvcf.merge.3.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - /tmp/teAXFodfS9/gvcf.merge.1.bcf /tmp/teAXFodfS9/gvcf.merge.2.bcf /tmp/teAXFodfS9/gvcf.merge.3.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - /tmp/teAXFodfS9/gvcf.merge.1.bcf /tmp/teAXFodfS9/gvcf.merge.2.bcf /tmp/teAXFodfS9/gvcf.merge.3.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - /tmp/teAXFodfS9/merge.gvcf.2.a.vcf.gz /tmp/teAXFodfS9/merge.gvcf.2.b.vcf.gz /tmp/teAXFodfS9/merge.gvcf.2.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - /tmp/teAXFodfS9/merge.gvcf.2.a.vcf.gz /tmp/teAXFodfS9/merge.gvcf.2.b.vcf.gz /tmp/teAXFodfS9/merge.gvcf.2.c.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - -m both,* /tmp/teAXFodfS9/merge.gvcf.2.a.vcf.gz /tmp/teAXFodfS9/merge.gvcf.2.b.vcf.gz /tmp/teAXFodfS9/merge.gvcf.2.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - -m both,* /tmp/teAXFodfS9/merge.gvcf.2.a.vcf.gz /tmp/teAXFodfS9/merge.gvcf.2.b.vcf.gz /tmp/teAXFodfS9/merge.gvcf.2.c.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - -m both,** /tmp/teAXFodfS9/merge.gvcf.2.a.vcf.gz /tmp/teAXFodfS9/merge.gvcf.2.b.vcf.gz /tmp/teAXFodfS9/merge.gvcf.2.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - -m both,** /tmp/teAXFodfS9/merge.gvcf.2.a.vcf.gz /tmp/teAXFodfS9/merge.gvcf.2.b.vcf.gz /tmp/teAXFodfS9/merge.gvcf.2.c.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - -i SRC:join /tmp/teAXFodfS9/merge.gvcf.3.a.vcf.gz /tmp/teAXFodfS9/merge.gvcf.3.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - -i SRC:join /tmp/teAXFodfS9/merge.gvcf.3.a.vcf.gz /tmp/teAXFodfS9/merge.gvcf.3.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - /tmp/teAXFodfS9/merge.gvcf.4.a.vcf.gz /tmp/teAXFodfS9/merge.gvcf.4.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - /tmp/teAXFodfS9/merge.gvcf.4.a.vcf.gz /tmp/teAXFodfS9/merge.gvcf.4.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - /tmp/teAXFodfS9/merge.gvcf.4.a.bcf /tmp/teAXFodfS9/merge.gvcf.4.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - /tmp/teAXFodfS9/merge.gvcf.4.a.bcf /tmp/teAXFodfS9/merge.gvcf.4.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/teAXFodfS9/merge.5.a.vcf.gz /tmp/teAXFodfS9/merge.5.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/teAXFodfS9/merge.5.a.vcf.gz /tmp/teAXFodfS9/merge.5.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/teAXFodfS9/merge.5.a.bcf /tmp/teAXFodfS9/merge.5.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/teAXFodfS9/merge.5.a.bcf /tmp/teAXFodfS9/merge.5.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/teAXFodfS9/merge.6.a.vcf.gz /tmp/teAXFodfS9/merge.6.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/teAXFodfS9/merge.6.a.vcf.gz /tmp/teAXFodfS9/merge.6.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/teAXFodfS9/merge.6.a.bcf /tmp/teAXFodfS9/merge.6.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/teAXFodfS9/merge.6.a.bcf /tmp/teAXFodfS9/merge.6.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - /tmp/teAXFodfS9/merge.gvcf.7.a.vcf.gz /tmp/teAXFodfS9/merge.gvcf.7.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - /tmp/teAXFodfS9/merge.gvcf.7.a.vcf.gz /tmp/teAXFodfS9/merge.gvcf.7.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - /tmp/teAXFodfS9/merge.gvcf.7.a.bcf /tmp/teAXFodfS9/merge.gvcf.7.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - /tmp/teAXFodfS9/merge.gvcf.7.a.bcf /tmp/teAXFodfS9/merge.gvcf.7.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - /tmp/teAXFodfS9/merge.gvcf.8.a.vcf.gz /tmp/teAXFodfS9/merge.gvcf.8.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - /tmp/teAXFodfS9/merge.gvcf.8.a.vcf.gz /tmp/teAXFodfS9/merge.gvcf.8.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - /tmp/teAXFodfS9/merge.gvcf.8.a.bcf /tmp/teAXFodfS9/merge.gvcf.8.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - /tmp/teAXFodfS9/merge.gvcf.8.a.bcf /tmp/teAXFodfS9/merge.gvcf.8.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples /tmp/teAXFodfS9/merge.7.a.vcf.gz /tmp/teAXFodfS9/merge.7.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples /tmp/teAXFodfS9/merge.7.a.vcf.gz /tmp/teAXFodfS9/merge.7.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples /tmp/teAXFodfS9/merge.7.a.bcf /tmp/teAXFodfS9/merge.7.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples /tmp/teAXFodfS9/merge.7.a.bcf /tmp/teAXFodfS9/merge.7.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa /tmp/teAXFodfS9/merge.gvcf.9a.vcf.gz /tmp/teAXFodfS9/merge.gvcf.9b.vcf.gz /tmp/teAXFodfS9/merge.gvcf.9c.vcf.gz /tmp/teAXFodfS9/merge.gvcf.9d.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa /tmp/teAXFodfS9/merge.gvcf.9a.vcf.gz /tmp/teAXFodfS9/merge.gvcf.9b.vcf.gz /tmp/teAXFodfS9/merge.gvcf.9c.vcf.gz /tmp/teAXFodfS9/merge.gvcf.9d.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa /tmp/teAXFodfS9/merge.gvcf.9a.bcf /tmp/teAXFodfS9/merge.gvcf.9b.bcf /tmp/teAXFodfS9/merge.gvcf.9c.bcf /tmp/teAXFodfS9/merge.gvcf.9d.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa /tmp/teAXFodfS9/merge.gvcf.9a.bcf /tmp/teAXFodfS9/merge.gvcf.9b.bcf /tmp/teAXFodfS9/merge.gvcf.9c.bcf /tmp/teAXFodfS9/merge.gvcf.9d.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa -r 22:21-23 /tmp/teAXFodfS9/merge.gvcf.9a.vcf.gz /tmp/teAXFodfS9/merge.gvcf.9b.vcf.gz /tmp/teAXFodfS9/merge.gvcf.9c.vcf.gz /tmp/teAXFodfS9/merge.gvcf.9d.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa -r 22:21-23 /tmp/teAXFodfS9/merge.gvcf.9a.vcf.gz /tmp/teAXFodfS9/merge.gvcf.9b.vcf.gz /tmp/teAXFodfS9/merge.gvcf.9c.vcf.gz /tmp/teAXFodfS9/merge.gvcf.9d.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa -r 22:21-23 /tmp/teAXFodfS9/merge.gvcf.9a.bcf /tmp/teAXFodfS9/merge.gvcf.9b.bcf /tmp/teAXFodfS9/merge.gvcf.9c.bcf /tmp/teAXFodfS9/merge.gvcf.9d.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa -r 22:21-23 /tmp/teAXFodfS9/merge.gvcf.9a.bcf /tmp/teAXFodfS9/merge.gvcf.9b.bcf /tmp/teAXFodfS9/merge.gvcf.9c.bcf /tmp/teAXFodfS9/merge.gvcf.9d.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa /tmp/teAXFodfS9/merge.gvcf.9a.vcf.gz /tmp/teAXFodfS9/merge.gvcf.9b.vcf.gz /tmp/teAXFodfS9/merge.gvcf.9c.vcf.gz /tmp/teAXFodfS9/merge.gvcf.9d.vcf.gz /tmp/teAXFodfS9/merge.gvcf.9e.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa /tmp/teAXFodfS9/merge.gvcf.9a.vcf.gz /tmp/teAXFodfS9/merge.gvcf.9b.vcf.gz /tmp/teAXFodfS9/merge.gvcf.9c.vcf.gz /tmp/teAXFodfS9/merge.gvcf.9d.vcf.gz /tmp/teAXFodfS9/merge.gvcf.9e.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa /tmp/teAXFodfS9/merge.gvcf.9a.bcf /tmp/teAXFodfS9/merge.gvcf.9b.bcf /tmp/teAXFodfS9/merge.gvcf.9c.bcf /tmp/teAXFodfS9/merge.gvcf.9d.bcf /tmp/teAXFodfS9/merge.gvcf.9e.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa /tmp/teAXFodfS9/merge.gvcf.9a.bcf /tmp/teAXFodfS9/merge.gvcf.9b.bcf /tmp/teAXFodfS9/merge.gvcf.9c.bcf /tmp/teAXFodfS9/merge.gvcf.9d.bcf /tmp/teAXFodfS9/merge.gvcf.9e.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa -r 22:21-23 /tmp/teAXFodfS9/merge.gvcf.9a.vcf.gz /tmp/teAXFodfS9/merge.gvcf.9b.vcf.gz /tmp/teAXFodfS9/merge.gvcf.9c.vcf.gz /tmp/teAXFodfS9/merge.gvcf.9d.vcf.gz /tmp/teAXFodfS9/merge.gvcf.9e.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa -r 22:21-23 /tmp/teAXFodfS9/merge.gvcf.9a.vcf.gz /tmp/teAXFodfS9/merge.gvcf.9b.vcf.gz /tmp/teAXFodfS9/merge.gvcf.9c.vcf.gz /tmp/teAXFodfS9/merge.gvcf.9d.vcf.gz /tmp/teAXFodfS9/merge.gvcf.9e.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa -r 22:21-23 /tmp/teAXFodfS9/merge.gvcf.9a.bcf /tmp/teAXFodfS9/merge.gvcf.9b.bcf /tmp/teAXFodfS9/merge.gvcf.9c.bcf /tmp/teAXFodfS9/merge.gvcf.9d.bcf /tmp/teAXFodfS9/merge.gvcf.9e.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa -r 22:21-23 /tmp/teAXFodfS9/merge.gvcf.9a.bcf /tmp/teAXFodfS9/merge.gvcf.9b.bcf /tmp/teAXFodfS9/merge.gvcf.9c.bcf /tmp/teAXFodfS9/merge.gvcf.9d.bcf /tmp/teAXFodfS9/merge.gvcf.9e.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/teAXFodfS9/merge.gvcf.10.a.vcf.gz /tmp/teAXFodfS9/merge.gvcf.10.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/teAXFodfS9/merge.gvcf.10.a.vcf.gz /tmp/teAXFodfS9/merge.gvcf.10.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/teAXFodfS9/merge.gvcf.10.a.bcf /tmp/teAXFodfS9/merge.gvcf.10.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/teAXFodfS9/merge.gvcf.10.a.bcf /tmp/teAXFodfS9/merge.gvcf.10.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -m none /tmp/teAXFodfS9/merge.gvcf.10.a.vcf.gz /tmp/teAXFodfS9/merge.gvcf.10.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -m none /tmp/teAXFodfS9/merge.gvcf.10.a.vcf.gz /tmp/teAXFodfS9/merge.gvcf.10.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -m none /tmp/teAXFodfS9/merge.gvcf.10.a.bcf /tmp/teAXFodfS9/merge.gvcf.10.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -m none /tmp/teAXFodfS9/merge.gvcf.10.a.bcf /tmp/teAXFodfS9/merge.gvcf.10.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/merge.gvcf.10.fa /tmp/teAXFodfS9/merge.gvcf.10.a.vcf.gz /tmp/teAXFodfS9/merge.gvcf.10.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/merge.gvcf.10.fa /tmp/teAXFodfS9/merge.gvcf.10.a.vcf.gz /tmp/teAXFodfS9/merge.gvcf.10.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/merge.gvcf.10.fa /tmp/teAXFodfS9/merge.gvcf.10.a.bcf /tmp/teAXFodfS9/merge.gvcf.10.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/merge.gvcf.10.fa /tmp/teAXFodfS9/merge.gvcf.10.a.bcf /tmp/teAXFodfS9/merge.gvcf.10.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/merge.gvcf.10.fa -m none /tmp/teAXFodfS9/merge.gvcf.10.a.vcf.gz /tmp/teAXFodfS9/merge.gvcf.10.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/merge.gvcf.10.fa -m none /tmp/teAXFodfS9/merge.gvcf.10.a.vcf.gz /tmp/teAXFodfS9/merge.gvcf.10.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/merge.gvcf.10.fa -m none /tmp/teAXFodfS9/merge.gvcf.10.a.bcf /tmp/teAXFodfS9/merge.gvcf.10.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/merge.gvcf.10.fa -m none /tmp/teAXFodfS9/merge.gvcf.10.a.bcf /tmp/teAXFodfS9/merge.gvcf.10.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/teAXFodfS9/merge.noidx.a.vcf.gz /tmp/teAXFodfS9/merge.noidx.b.vcf.gz /tmp/teAXFodfS9/merge.noidx.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/teAXFodfS9/merge.noidx.a.vcf.gz /tmp/teAXFodfS9/merge.noidx.b.vcf.gz /tmp/teAXFodfS9/merge.noidx.c.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/teAXFodfS9/merge.noidx.a.bcf /tmp/teAXFodfS9/merge.noidx.b.bcf /tmp/teAXFodfS9/merge.noidx.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/teAXFodfS9/merge.noidx.a.bcf /tmp/teAXFodfS9/merge.noidx.b.bcf /tmp/teAXFodfS9/merge.noidx.c.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --no-index /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/merge.noidx.a.vcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/merge.noidx.b.vcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/merge.noidx.c.vcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --no-index /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/merge.noidx.a.vcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/merge.noidx.b.vcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/merge.noidx.c.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --no-index /tmp/teAXFodfS9/merge.noidx.a.bcf /tmp/teAXFodfS9/merge.noidx.b.bcf /tmp/teAXFodfS9/merge.noidx.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --no-index /tmp/teAXFodfS9/merge.noidx.a.bcf /tmp/teAXFodfS9/merge.noidx.b.bcf /tmp/teAXFodfS9/merge.noidx.c.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/teAXFodfS9/merge.8.a.vcf.gz /tmp/teAXFodfS9/merge.8.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/teAXFodfS9/merge.8.a.vcf.gz /tmp/teAXFodfS9/merge.8.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/teAXFodfS9/merge.8.a.bcf /tmp/teAXFodfS9/merge.8.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/teAXFodfS9/merge.8.a.bcf /tmp/teAXFodfS9/merge.8.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -i AN:sum,AC:sum /tmp/teAXFodfS9/merge.8.a.vcf.gz /tmp/teAXFodfS9/merge.8.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -i AN:sum,AC:sum /tmp/teAXFodfS9/merge.8.a.vcf.gz /tmp/teAXFodfS9/merge.8.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -i AN:sum,AC:sum /tmp/teAXFodfS9/merge.8.a.bcf /tmp/teAXFodfS9/merge.8.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -i AN:sum,AC:sum /tmp/teAXFodfS9/merge.8.a.bcf /tmp/teAXFodfS9/merge.8.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/teAXFodfS9/merge.9.a.vcf.gz /tmp/teAXFodfS9/merge.9.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/teAXFodfS9/merge.9.a.vcf.gz /tmp/teAXFodfS9/merge.9.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/teAXFodfS9/merge.9.a.bcf /tmp/teAXFodfS9/merge.9.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/teAXFodfS9/merge.9.a.bcf /tmp/teAXFodfS9/merge.9.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -i AN:sum,AC:sum /tmp/teAXFodfS9/merge.9.a.vcf.gz /tmp/teAXFodfS9/merge.9.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -i AN:sum,AC:sum /tmp/teAXFodfS9/merge.9.a.vcf.gz /tmp/teAXFodfS9/merge.9.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -i AN:sum,AC:sum /tmp/teAXFodfS9/merge.9.a.bcf /tmp/teAXFodfS9/merge.9.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -i AN:sum,AC:sum /tmp/teAXFodfS9/merge.9.a.bcf /tmp/teAXFodfS9/merge.9.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -m none /tmp/teAXFodfS9/merge.10.a.vcf.gz /tmp/teAXFodfS9/merge.10.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -m none /tmp/teAXFodfS9/merge.10.a.vcf.gz /tmp/teAXFodfS9/merge.10.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -m none /tmp/teAXFodfS9/merge.10.a.bcf /tmp/teAXFodfS9/merge.10.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -m none /tmp/teAXFodfS9/merge.10.a.bcf /tmp/teAXFodfS9/merge.10.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -m both /tmp/teAXFodfS9/merge.10.a.vcf.gz /tmp/teAXFodfS9/merge.10.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -m both /tmp/teAXFodfS9/merge.10.a.vcf.gz /tmp/teAXFodfS9/merge.10.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -m both /tmp/teAXFodfS9/merge.10.a.bcf /tmp/teAXFodfS9/merge.10.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -m both /tmp/teAXFodfS9/merge.10.a.bcf /tmp/teAXFodfS9/merge.10.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -m snp-ins-del /tmp/teAXFodfS9/merge.10.a.vcf.gz /tmp/teAXFodfS9/merge.10.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -m snp-ins-del /tmp/teAXFodfS9/merge.10.a.vcf.gz /tmp/teAXFodfS9/merge.10.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -m snp-ins-del /tmp/teAXFodfS9/merge.10.a.bcf /tmp/teAXFodfS9/merge.10.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -m snp-ins-del /tmp/teAXFodfS9/merge.10.a.bcf /tmp/teAXFodfS9/merge.10.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - /tmp/teAXFodfS9/merge.mrules.1.a.vcf.gz /tmp/teAXFodfS9/merge.mrules.1.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - /tmp/teAXFodfS9/merge.mrules.1.a.vcf.gz /tmp/teAXFodfS9/merge.mrules.1.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - /tmp/teAXFodfS9/merge.mrules.1.a.bcf /tmp/teAXFodfS9/merge.mrules.1.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - /tmp/teAXFodfS9/merge.mrules.1.a.bcf /tmp/teAXFodfS9/merge.mrules.1.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - -M AD:.,PL:. /tmp/teAXFodfS9/merge.mrules.1.a.vcf.gz /tmp/teAXFodfS9/merge.mrules.1.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - -M AD:.,PL:. /tmp/teAXFodfS9/merge.mrules.1.a.vcf.gz /tmp/teAXFodfS9/merge.mrules.1.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - -M AD:.,PL:. /tmp/teAXFodfS9/merge.mrules.1.a.bcf /tmp/teAXFodfS9/merge.mrules.1.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - -M AD:.,PL:. /tmp/teAXFodfS9/merge.mrules.1.a.bcf /tmp/teAXFodfS9/merge.mrules.1.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - /tmp/teAXFodfS9/merge.gvcf.5.a.vcf.gz /tmp/teAXFodfS9/merge.gvcf.5.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - /tmp/teAXFodfS9/merge.gvcf.5.a.vcf.gz /tmp/teAXFodfS9/merge.gvcf.5.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - /tmp/teAXFodfS9/merge.gvcf.5.a.bcf /tmp/teAXFodfS9/merge.gvcf.5.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - /tmp/teAXFodfS9/merge.gvcf.5.a.bcf /tmp/teAXFodfS9/merge.gvcf.5.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - --merge none /tmp/teAXFodfS9/merge.gvcf.5.a.vcf.gz /tmp/teAXFodfS9/merge.gvcf.5.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - --merge none /tmp/teAXFodfS9/merge.gvcf.5.a.vcf.gz /tmp/teAXFodfS9/merge.gvcf.5.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - --merge none /tmp/teAXFodfS9/merge.gvcf.5.a.bcf /tmp/teAXFodfS9/merge.gvcf.5.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - --merge none /tmp/teAXFodfS9/merge.gvcf.5.a.bcf /tmp/teAXFodfS9/merge.gvcf.5.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - /tmp/teAXFodfS9/merge.gvcf.11.a.vcf.gz /tmp/teAXFodfS9/merge.gvcf.11.b.vcf.gz /tmp/teAXFodfS9/merge.gvcf.11.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - /tmp/teAXFodfS9/merge.gvcf.11.a.vcf.gz /tmp/teAXFodfS9/merge.gvcf.11.b.vcf.gz /tmp/teAXFodfS9/merge.gvcf.11.c.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - /tmp/teAXFodfS9/merge.gvcf.11.a.bcf /tmp/teAXFodfS9/merge.gvcf.11.b.bcf /tmp/teAXFodfS9/merge.gvcf.11.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - /tmp/teAXFodfS9/merge.gvcf.11.a.bcf /tmp/teAXFodfS9/merge.gvcf.11.b.bcf /tmp/teAXFodfS9/merge.gvcf.11.c.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '[%CHROM\t%POS\t%GT\t%LAA\t%smpl_count(FMT/LAA)\n]\n' /tmp/teAXFodfS9/smpl-count.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/smpl-count.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '[%CHROM\t%POS\t%GT\t%LAA\t%smpl_count(FMT/LAA)\n]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '[%CHROM\t%POS\t%GT\t%LAA\t%smpl_count(FMT/LAA)\n]\n' -i'smpl_count(LAA)==1' /tmp/teAXFodfS9/smpl-count.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/smpl-count.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '[%CHROM\t%POS\t%GT\t%LAA\t%smpl_count(FMT/LAA)\n]\n' -i'smpl_count(LAA)==1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '[%CHROM\t%POS\t%GT\t%LAA\t%smpl_count(FMT/LAA)\n]\n' -i'smpl_count(LAA)==1 & GT="hom"' /tmp/teAXFodfS9/smpl-count.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/smpl-count.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '[%CHROM\t%POS\t%GT\t%LAA\t%smpl_count(FMT/LAA)\n]\n' -i'smpl_count(LAA)==1 & GT="hom"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '[%CHROM\t%POS\t%GT\t%LAA\t%smpl_count(FMT/LAA)\n]\n' -i'GT="hom" & smpl_count(LAA)==1' /tmp/teAXFodfS9/smpl-count.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/smpl-count.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '[%CHROM\t%POS\t%GT\t%LAA\t%smpl_count(FMT/LAA)\n]\n' -i'GT="hom" & smpl_count(LAA)==1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%TAG' -i 'TAG[*]="."' /tmp/teAXFodfS9/query.filter.15.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter.15.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%TAG' -i 'TAG[*]="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%TAG' -i 'TAG[*]~"\."' /tmp/teAXFodfS9/query.filter.15.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter.15.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%TAG' -i 'TAG[*]~"\."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%TAG' -i 'TAG[*]!="."' /tmp/teAXFodfS9/query.filter.15.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter.15.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%TAG' -i 'TAG[*]!="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%TAG' -i 'TAG[*]!~"\."' /tmp/teAXFodfS9/query.filter.15.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter.15.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%TAG' -i 'TAG[*]!~"\."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM %POS %ID %REF %ALT %QUAL %FILTER \t %INFO/CHROM %INFO/POS %INFO/ID %INFO/REF %INFO/ALT %INFO/QUAL %INFO/FILTER' /tmp/teAXFodfS9/query.3.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.3.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM %POS %ID %REF %ALT %QUAL %FILTER \t %INFO/CHROM %INFO/POS %INFO/ID %INFO/REF %INFO/ALT %INFO/QUAL %INFO/FILTER'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '[ %CHROM] \t [ %POS] \t [ %ID] \t [ %REF] \t [ %ALT] \t [ %QUAL] \t [ %FILTER]' /tmp/teAXFodfS9/query.3.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.3.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '[ %CHROM] \t [ %POS] \t [ %ID] \t [ %REF] \t [ %ALT] \t [ %QUAL] \t [ %FILTER]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '[ %/CHROM] \t [ %/POS] \t [ %/ID] \t [ %/REF] \t [ %/ALT] \t [ %/QUAL] \t [ %/FILTER]' /tmp/teAXFodfS9/query.3.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.3.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '[ %/CHROM] \t [ %/POS] \t [ %/ID] \t [ %/REF] \t [ %/ALT] \t [ %/QUAL] \t [ %/FILTER]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS [ %SAMPLE %GT]' /tmp/teAXFodfS9/query.filter.14.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter.14.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS [ %SAMPLE %GT]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS [ %SAMPLE %GT]' -i'GT="."' /tmp/teAXFodfS9/query.filter.14.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter.14.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS [ %SAMPLE %GT]' -i'GT="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS [ %SAMPLE %GT]' -i'GT="0|1"' /tmp/teAXFodfS9/query.filter.14.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter.14.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS [ %SAMPLE %GT]' -i'GT="0|1"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS\t%INFO/AD\t%SUM(INFO/AD)' /tmp/teAXFodfS9/query.func.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.func.1.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS\t%INFO/AD\t%SUM(INFO/AD)'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS\t[%AD ]\t%SUM(FORMAT/AD)' /tmp/teAXFodfS9/query.func.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.func.1.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS\t[%AD ]\t%SUM(FORMAT/AD)'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS\t[%AD ]\t[ %SUM(FORMAT/AD)]' /tmp/teAXFodfS9/query.func.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.func.1.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS\t[%AD ]\t[ %SUM(FORMAT/AD)]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS\t[%AD ]\t[ %sSUM(FORMAT/AD)]' /tmp/teAXFodfS9/query.func.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.func.1.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS\t[%AD ]\t[ %sSUM(FORMAT/AD)]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM\t%POS\t%CLNREVSTAT\n' -i'CLNREVSTAT="criteria_provided,_conflicting_interpretations"' /tmp/teAXFodfS9/query.string.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.string.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM\t%POS\t%CLNREVSTAT\n' -i'CLNREVSTAT="criteria_provided,_conflicting_interpretations"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM\t%POS\t%CLNREVSTAT\n' -i'CLNREVSTAT="criteria_provided" || CLNREVSTAT="_conflicting_interpretations"' /tmp/teAXFodfS9/query.string.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.string.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM\t%POS\t%CLNREVSTAT\n' -i'CLNREVSTAT="criteria_provided" || CLNREVSTAT="_conflicting_interpretations"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM\t%POS\t%CLNREVSTAT\n' -i'CLNREVSTAT="criteria_provided" && CLNREVSTAT="_conflicting_interpretations"' /tmp/teAXFodfS9/query.string.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.string.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM\t%POS\t%CLNREVSTAT\n' -i'CLNREVSTAT="criteria_provided" && CLNREVSTAT="_conflicting_interpretations"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM\t%POS\t%INFO/STR\n' -i'INFO/STR=@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.string.2.1.txt' /tmp/teAXFodfS9/query.string.2.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.string.2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM\t%POS\t%INFO/STR\n' -i'INFO/STR=@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.string.2.1.txt'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM\t%POS[\t%STR]\n' -i'FMT/STR=@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.string.2.2.txt' /tmp/teAXFodfS9/query.string.2.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.string.2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM\t%POS[\t%STR]\n' -i'FMT/STR=@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.string.2.2.txt'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM\t%POS\t%REF\t%ALT\t%DP4\t%AN[\t%GT\t%TGT]\n' /tmp/teAXFodfS9/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM\t%POS\t%REF\t%ALT\t%DP4\t%AN[\t%GT\t%TGT]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%RSX\t%VKX\n' /tmp/teAXFodfS9/query.variantkey.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.variantkey.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%RSX\t%VKX\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%XRI\n' -i'XRI[*]>1111' /tmp/teAXFodfS9/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%XRI\n' -i'XRI[*]>1111'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%XRF\n' -i'XRF[*]=2e6' /tmp/teAXFodfS9/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%XRF\n' -i'XRF[*]=2e6'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%XGS\n' -i'XGS[5]="PQR"' /tmp/teAXFodfS9/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%XGS\n' -i'XGS[5]="PQR"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%XGS\n' -i'XGS[*]="GHI"' /tmp/teAXFodfS9/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%XGS\n' -i'XGS[*]="GHI"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%XGS\n' -i'XGS[2]~"H"' /tmp/teAXFodfS9/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%XGS\n' -i'XGS[2]~"H"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%XGS\n' -i'XGS[3]!~"H" && XGS!="."' /tmp/teAXFodfS9/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%XGS\n' -i'XGS[3]!~"H" && XGS!="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%XGS\n' -i'XGS[*]~"H"' /tmp/teAXFodfS9/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%XGS\n' -i'XGS[*]~"H"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS %REF %ALT\n' -i'REF~"C" && ALT[*]~"CT"' /tmp/teAXFodfS9/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS %REF %ALT\n' -i'REF~"C" && ALT[*]~"CT"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS %REF %ALT\n' -i'N_ALT=2' /tmp/teAXFodfS9/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS %REF %ALT\n' -i'N_ALT=2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS %AN\n' -i'AN!=2*N_SAMPLES' /tmp/teAXFodfS9/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS %AN\n' -i'AN!=2*N_SAMPLES'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS[ %GL]\n' -i'min(abs(GL[*:0]))=10' /tmp/teAXFodfS9/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS[ %GL]\n' -i'min(abs(GL[*:0]))=10'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS %CIGAR\n' -i'strlen(CIGAR[*])=4' /tmp/teAXFodfS9/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS %CIGAR\n' -i'strlen(CIGAR[*])=4'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS[ %GT]\n' -i'AC[0]=3' /tmp/teAXFodfS9/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS[ %GT]\n' -i'AC[0]=3'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS[ %GT]\n' -i'AF[0]=3/4' /tmp/teAXFodfS9/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS[ %GT]\n' -i'AF[0]=3/4'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS[ %GT]\n' -i'MAC[0]=1' /tmp/teAXFodfS9/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS[ %GT]\n' -i'MAC[0]=1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS[ %GT]\n' -i'MAF[0]=1/4' /tmp/teAXFodfS9/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS[ %GT]\n' -i'MAF[0]=1/4'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'I8=%I8 I16=%I16 I32=%I32 IF=%IF IA8=%IA8 IA16=%IA16 IA32=%IA32 IAF=%IAF IA8=%IA8{1} IA16=%IA16{1} IA32=%IA32{1} IAF=%IAF{1} [ %F8:%F16:%F32:%FF]\n' /tmp/teAXFodfS9/view.vectors.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/view.vectors.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'I8=%I8 I16=%I16 I32=%I32 IF=%IF IA8=%IA8 IA16=%IA16 IA32=%IA32 IAF=%IAF IA8=%IA8{1} IA16=%IA16{1} IA32=%IA32{1} IAF=%IAF{1} [ %F8:%F16:%F32:%FF]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %GT\n]' -i'GT ="1"' /tmp/teAXFodfS9/query.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %GT\n]' -i'GT ="1"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %GT\n]' -i'GT!="1"' /tmp/teAXFodfS9/query.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %GT\n]' -i'GT!="1"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %GT\n]' -e'GT ="1"' /tmp/teAXFodfS9/query.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %GT\n]' -e'GT ="1"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %GT\n]' -e'GT!="1"' /tmp/teAXFodfS9/query.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %GT\n]' -e'GT!="1"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%XX_A %XX.A %XX.A0 %xx.a0\n' /tmp/teAXFodfS9/query.2.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%XX_A %XX.A %XX.A0 %xx.a0\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'IINT="."'  -f'%POS %IINT\n' /tmp/teAXFodfS9/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'IINT="."'  -f'%POS %IINT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'IINT!="."' -f'%POS %IINT\n' /tmp/teAXFodfS9/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'IINT!="."' -f'%POS %IINT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -e'IINT!="."' -f'%POS %IINT\n' /tmp/teAXFodfS9/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -e'IINT!="."' -f'%POS %IINT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -e'IINT="."'  -f'%POS %IINT\n' /tmp/teAXFodfS9/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -e'IINT="."'  -f'%POS %IINT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'IFLT="."'  -f'%POS %IFLT\n' /tmp/teAXFodfS9/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'IFLT="."'  -f'%POS %IFLT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'IFLT!="."' -f'%POS %IFLT\n' /tmp/teAXFodfS9/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'IFLT!="."' -f'%POS %IFLT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -e'IFLT!="."' -f'%POS %IFLT\n' /tmp/teAXFodfS9/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -e'IFLT!="."' -f'%POS %IFLT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -e'IFLT="."'  -f'%POS %IFLT\n' /tmp/teAXFodfS9/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -e'IFLT="."'  -f'%POS %IFLT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'ISTR="."'  -f'%POS %ISTR\n' /tmp/teAXFodfS9/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'ISTR="."'  -f'%POS %ISTR\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'ISTR!="."' -f'%POS %ISTR\n' /tmp/teAXFodfS9/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'ISTR!="."' -f'%POS %ISTR\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -e'ISTR="."'  -f'%POS %ISTR\n' /tmp/teAXFodfS9/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -e'ISTR="."'  -f'%POS %ISTR\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -e'ISTR!="."' -f'%POS %ISTR\n' /tmp/teAXFodfS9/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -e'ISTR!="."' -f'%POS %ISTR\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER="q11"' -f'%POS %ISTR\n' /tmp/teAXFodfS9/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER="q11"' -f'%POS %ISTR\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER="A"' -f'%POS %FILTER\n' /tmp/teAXFodfS9/filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER="A"' -f'%POS %FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER!="A"' -f'%POS %FILTER\n' /tmp/teAXFodfS9/filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER!="A"' -f'%POS %FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER~"A"' -f'%POS %FILTER\n' /tmp/teAXFodfS9/filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER~"A"' -f'%POS %FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER!~"A"' -f'%POS %FILTER\n' /tmp/teAXFodfS9/filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER!~"A"' -f'%POS %FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%LINE' /tmp/teAXFodfS9/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%LINE'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type="snp"' /tmp/teAXFodfS9/query.filter-type.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter-type.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type="snp"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type~"snp"' /tmp/teAXFodfS9/query.filter-type.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter-type.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type~"snp"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type!="snp"' /tmp/teAXFodfS9/query.filter-type.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter-type.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type!="snp"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type!~"snp"' /tmp/teAXFodfS9/query.filter-type.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter-type.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type!~"snp"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\n' -i'INFO/TYPE="xxx"' /tmp/teAXFodfS9/query.filter-type.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter-type.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\n' -i'INFO/TYPE="xxx"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%A_AF\t%B_AF\t%C_AF\n' -i'A_AF>=0.0001 || B_AF >= 0.0001 || C_AF >= 0.0001' /tmp/teAXFodfS9/filter-missing-floats.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/filter-missing-floats.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%A_AF\t%B_AF\t%C_AF\n' -i'A_AF>=0.0001 || B_AF >= 0.0001 || C_AF >= 0.0001'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%A_AF\t%B_AF\t%C_AF\n' -e'A_AF>=0.0001 || B_AF >= 0.0001 || C_AF >= 0.0001' /tmp/teAXFodfS9/filter-missing-floats.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/filter-missing-floats.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%A_AF\t%B_AF\t%C_AF\n' -e'A_AF>=0.0001 || B_AF >= 0.0001 || C_AF >= 0.0001'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FMT/FINT!="."' -f'[\t%FINT]\n' /tmp/teAXFodfS9/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FMT/FINT!="."' -f'[\t%FINT]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%GT]\n' -i'GT~"0/[1-9]" || GT~"[1-9]/0"' /tmp/teAXFodfS9/query.filter.2.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter.2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%GT]\n' -i'GT~"0/[1-9]" || GT~"[1-9]/0"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:1-2,4]="EE"' /tmp/teAXFodfS9/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:1-2,4]="EE"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'"EE"=FGS[*:1-2,4]' /tmp/teAXFodfS9/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'"EE"=FGS[*:1-2,4]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'FGI[*:1-2,5]=6' /tmp/teAXFodfS9/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'FGI[*:1-2,5]=6'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'6=FGI[*:1-2,5]' /tmp/teAXFodfS9/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'6=FGI[*:1-2,5]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGF\n]\n' -i'FGF[*:1-3,4]=5e-5' /tmp/teAXFodfS9/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGF\n]\n' -i'FGF[*:1-3,4]=5e-5'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:4]!="EE"' /tmp/teAXFodfS9/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:4]!="EE"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:4]="."' /tmp/teAXFodfS9/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:4]="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:4]!="."' /tmp/teAXFodfS9/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:4]!="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'FGI[*:1-2,5]="."' /tmp/teAXFodfS9/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'FGI[*:1-2,5]="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'FGI[*:1-2,5]!="."' /tmp/teAXFodfS9/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'FGI[*:1-2,5]!="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=1 | FMT/DP=2' /tmp/teAXFodfS9/filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=1 | FMT/DP=2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=1 | FMT/DP="."' /tmp/teAXFodfS9/filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=1 | FMT/DP="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=19' /tmp/teAXFodfS9/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=19'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=19 |  FMT/DP="."' /tmp/teAXFodfS9/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=19 |  FMT/DP="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=19 || FMT/DP="."' /tmp/teAXFodfS9/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=19 || FMT/DP="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP[0]=19' /tmp/teAXFodfS9/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP[0]=19'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP[0]!=19' /tmp/teAXFodfS9/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP[0]!=19'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %DP %GQ\n]\n' -i'FMT/DP=19 &  FMT/GQ=589' /tmp/teAXFodfS9/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %DP %GQ\n]\n' -i'FMT/DP=19 &  FMT/GQ=589'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %DP %GQ\n]\n' -i'FMT/DP=19 && FMT/GQ=1' /tmp/teAXFodfS9/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %DP %GQ\n]\n' -i'FMT/DP=19 && FMT/GQ=1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%GT\n]\n' -i'GT~"1" && GT~"2"' /tmp/teAXFodfS9/query.filter.3.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter.3.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%GT\n]\n' -i'GT~"1" && GT~"2"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%GT\n]\n' -i'GT~"1" &  GT~"2"' /tmp/teAXFodfS9/query.filter.3.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter.3.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%GT\n]\n' -i'GT~"1" &  GT~"2"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS[\t%GT]\n' -i'COUNT(GT="het")=1' /tmp/teAXFodfS9/query.filter.3.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter.3.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS[\t%GT]\n' -i'COUNT(GT="het")=1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS  %SAMPLE  %AD\n]\n' -i'AD[:0]+AD[:1] > 12' /tmp/teAXFodfS9/filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS  %SAMPLE  %AD\n]\n' -i'AD[:0]+AD[:1] > 12'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT[\t%GT]\n' -e'TYPE!="snp" || ALT="*"' /tmp/teAXFodfS9/query.filter.4.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter.4.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT[\t%GT]\n' -e'TYPE!="snp" || ALT="*"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%ID\n' -i 'ID=@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.56.out' /tmp/teAXFodfS9/view.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/view.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%ID\n' -i 'ID=@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.56.out'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%SAMPLE\t%GT\t%AD\n]' -i'GT="het" & binom(FMT/AD)>0.01' /tmp/teAXFodfS9/query.filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%SAMPLE\t%GT\t%AD\n]' -i'GT="het" & binom(FMT/AD)>0.01'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%SAMPLE\t%GT\t%AD\n]' -i'GT="het" & binom(FMT/AD[:0],FMT/AD[:1])>0.01' /tmp/teAXFodfS9/query.filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%SAMPLE\t%GT\t%AD\n]' -i'GT="het" & binom(FMT/AD[:0],FMT/AD[:1])>0.01'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%AD\n' -i'binom(INFO/AD[0],INFO/AD[1])>0.01' /tmp/teAXFodfS9/query.filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%AD\n' -i'binom(INFO/AD[0],INFO/AD[1])>0.01'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%GT\t%SAMPLE\t%AD\n]' -i'FMT/AD[GT]==10' /tmp/teAXFodfS9/query.filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%GT\t%SAMPLE\t%AD\n]' -i'FMT/AD[GT]==10'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%GT\t%SAMPLE\t%AD\n]' -i'sSUM(FMT/AD[GT])==210' /tmp/teAXFodfS9/query.filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%GT\t%SAMPLE\t%AD\n]' -i'sSUM(FMT/AD[GT])==210'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%GT\t%SAMPLE\t%AD\n]' -i'FMT/AD[0:GT]==30' /tmp/teAXFodfS9/query.filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%GT\t%SAMPLE\t%AD\n]' -i'FMT/AD[0:GT]==30'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%GT %TC %TS %TI %TF\n]' -i'FMT/TF[:GT]==1 && FMT/TF[:GT]==2' /tmp/teAXFodfS9/query.gtidx.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.gtidx.1.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%GT %TC %TS %TI %TF\n]' -i'FMT/TF[:GT]==1 && FMT/TF[:GT]==2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%GT %TC %TS %TI %TF\n]' -i'FMT/TI[:GT]==1 && FMT/TF[:GT]==2' /tmp/teAXFodfS9/query.gtidx.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.gtidx.1.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%GT %TC %TS %TI %TF\n]' -i'FMT/TI[:GT]==1 && FMT/TF[:GT]==2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%GT %TC %TS %TI %TF\n]' -i'FMT/TS[:GT]=="BB" && FMT/TS[:GT]=="CC"' /tmp/teAXFodfS9/query.gtidx.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.gtidx.1.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%GT %TC %TS %TI %TF\n]' -i'FMT/TS[:GT]=="BB" && FMT/TS[:GT]=="CC"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%GT %TC %TS %TI %TF\n]' -i'FMT/TC[:GT]=="B"  && FMT/TC[:GT]=="C"' /tmp/teAXFodfS9/query.gtidx.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.gtidx.1.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%GT %TC %TS %TI %TF\n]' -i'FMT/TC[:GT]=="B"  && FMT/TC[:GT]=="C"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%GT %TI\n]' -i'FMT/TI[:GT]=="."' /tmp/teAXFodfS9/query.gtidx.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.gtidx.1.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%GT %TI\n]' -i'FMT/TI[:GT]=="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM %POS\n' -i'CHROM="4"' /tmp/teAXFodfS9/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM %POS\n' -i'CHROM="4"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%TAG1\n' -i'(TAG1>=-129 && TAG1<=-120) || (TAG1>=-32769 && TAG1<=-32760)' /tmp/teAXFodfS9/query.negative.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.negative.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%TAG1\n' -i'(TAG1>=-129 && TAG1<=-120) || (TAG1>=-32769 && TAG1<=-32760)'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%TAGV1\n' -i'(TAGV1>=-129 && TAGV1<=-120) || (TAGV1>=-32769 && TAGV1<=-32760)' /tmp/teAXFodfS9/query.negative.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.negative.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%TAGV1\n' -i'(TAGV1>=-129 && TAGV1<=-120) || (TAGV1>=-32769 && TAGV1<=-32760)'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%TAG2\n' -i'(TAG2>=-129 && TAG2<=-120) || (TAG2>=-32769 && TAG2<=-32760)' /tmp/teAXFodfS9/query.negative.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.negative.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%TAG2\n' -i'(TAG2>=-129 && TAG2<=-120) || (TAG2>=-32769 && TAG2<=-32760)'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%TAGV2\n' -i'(TAGV2>=-129 && TAGV2<=-120) || (TAGV2>=-32769 && TAGV2<=-32760)' /tmp/teAXFodfS9/query.negative.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.negative.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%TAGV2\n' -i'(TAGV2>=-129 && TAGV2<=-120) || (TAGV2>=-32769 && TAGV2<=-32760)'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%SAMPLE\t%GQ\n]' -i'N_PASS(GQ<20)==1' /tmp/teAXFodfS9/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%SAMPLE\t%GQ\n]' -i'N_PASS(GQ<20)==1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -i'N_PASS(GT="alt")==1' /tmp/teAXFodfS9/query.filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -i'N_PASS(GT="alt")==1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -i'N_PASS(GT="alt")!=1' /tmp/teAXFodfS9/query.filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -i'N_PASS(GT="alt")!=1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -e'N_PASS(GT="alt")==1' /tmp/teAXFodfS9/query.filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -e'N_PASS(GT="alt")==1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -e'N_PASS(GT="alt")!=1' /tmp/teAXFodfS9/query.filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -e'N_PASS(GT="alt")!=1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM\t%POS\t%INFO\t%FORMAT\n' -s D,C /tmp/teAXFodfS9/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM\t%POS\t%INFO\t%FORMAT\n' -s D,C
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %GT %AD %PBINOM(AD)\n]' -i'phred(binom(FMT/AD))>=0' /tmp/teAXFodfS9/query.pbinom.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.pbinom.1.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %GT %AD %PBINOM(AD)\n]' -i'phred(binom(FMT/AD))>=0'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\n' -i'POS==16777217 || POS==33554432 || POS=118673904' /tmp/teAXFodfS9/query.filter.6.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter.6.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\n' -i'POS==16777217 || POS==33554432 || POS=118673904'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%II[\t%FI]\n' -i'sum(II)==6' /tmp/teAXFodfS9/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%II[\t%FI]\n' -i'sum(II)==6'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%II[\t%FI]\n' -i'sum(FORMAT/FI)==7' /tmp/teAXFodfS9/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%II[\t%FI]\n' -i'sum(FORMAT/FI)==7'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%II[\t%FI]\n' -i'avg(II)==2' /tmp/teAXFodfS9/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%II[\t%FI]\n' -i'avg(II)==2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%II[\t%FI]\n' -i'avg(FORMAT/FI)==1.75' /tmp/teAXFodfS9/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%II[\t%FI]\n' -i'avg(FORMAT/FI)==1.75'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%II[\t%FI]\n' -i'mean(II)==2' /tmp/teAXFodfS9/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%II[\t%FI]\n' -i'mean(II)==2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%II[\t%FI]\n' -i'mean(FORMAT/FI)==1.75' /tmp/teAXFodfS9/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%II[\t%FI]\n' -i'mean(FORMAT/FI)==1.75'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%II[\t%FI]\n' -i'median(II)==2' /tmp/teAXFodfS9/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%II[\t%FI]\n' -i'median(II)==2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%II[\t%FI]\n' -i'median(FORMAT/FI)==1.5' /tmp/teAXFodfS9/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%II[\t%FI]\n' -i'median(FORMAT/FI)==1.5'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%ILEN\n' -i'%ILEN==1' /tmp/teAXFodfS9/query.filter.8.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter.8.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%ILEN\n' -i'%ILEN==1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%ILEN\n' -i'ILEN==1' /tmp/teAXFodfS9/query.filter.8.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter.8.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%ILEN\n' -i'ILEN==1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS  %SAMPLE  %AD\n]' -i'FMT/AD[:0] < FMT/AD[:1]' /tmp/teAXFodfS9/query.filter.9.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter.9.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS  %SAMPLE  %AD\n]' -i'FMT/AD[:0] < FMT/AD[:1]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS  %SAMPLE  %AD\n]' -i'FMT/AD[:0] > FMT/AD[:1]' /tmp/teAXFodfS9/query.filter.9.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter.9.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS  %SAMPLE  %AD\n]' -i'FMT/AD[:0] > FMT/AD[:1]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[ %AD\n]' -i'AD[:1] / sum(AD[*]) > 0.5' /tmp/teAXFodfS9/query.filter.13.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter.13.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[ %AD\n]' -i'AD[:1] / sum(AD[*]) > 0.5'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS  %NUM_TAG\n' -i'COUNT(INFO/NUM_TAG)=2' /tmp/teAXFodfS9/query.filter.10.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter.10.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS  %NUM_TAG\n' -i'COUNT(INFO/NUM_TAG)=2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS  %STR_TAG\n' -i'COUNT(INFO/STR_TAG)=2' /tmp/teAXFodfS9/query.filter.10.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter.10.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS  %STR_TAG\n' -i'COUNT(INFO/STR_TAG)=2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS\t%N_PASS(GT="alt" & GQ>110)\t[\t%GT]\t[\t%GQ]\n' /tmp/teAXFodfS9/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS\t%N_PASS(GT="alt" & GQ>110)\t[\t%GT]\t[\t%GQ]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS[\t%SAMPLE=%GT]\n' -e 'GT="mis"' -s 1,3,0 /tmp/teAXFodfS9/query.filter.12.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter.12.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS[\t%SAMPLE=%GT]\n' -e 'GT="mis"' -s 1,3,0
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS[\t%SAMPLE=%GT]\n' -e 'GT="mis"' -s 0,1,3 /tmp/teAXFodfS9/query.filter.12.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter.12.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS[\t%SAMPLE=%GT]\n' -e 'GT="mis"' -s 0,1,3
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f "[%SAMPLE %GT\n]" -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.smpl.11.txt /tmp/teAXFodfS9/query.smpl.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.smpl.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f "[%SAMPLE %GT\n]" -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.smpl.11.txt
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -l -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.smpl.11.txt /tmp/teAXFodfS9/query.smpl.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.smpl.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -l -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.smpl.11.txt
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f "[%SAMPLE %GT\n]" -S ^/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.smpl.11.txt /tmp/teAXFodfS9/query.smpl.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.smpl.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f "[%SAMPLE %GT\n]" -S ^/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.smpl.11.txt
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -l -S ^/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.smpl.11.txt /tmp/teAXFodfS9/query.smpl.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.smpl.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -l -S ^/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.smpl.11.txt
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f "[%SAMPLE %GT\n]" -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.smpl.txt /tmp/teAXFodfS9/query.smpl.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.smpl.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f "[%SAMPLE %GT\n]" -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.smpl.txt
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -l -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.smpl.txt /tmp/teAXFodfS9/query.smpl.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.smpl.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -l -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.smpl.txt
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%ID\n' -i'ID~"s12"' /tmp/teAXFodfS9/query.filter.id.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter.id.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%ID\n' -i'ID~"s12"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%ID\n' -i'ID="rs123"' /tmp/teAXFodfS9/query.filter.id.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter.id.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%ID\n' -i'ID="rs123"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%ID\n' -i'ID="abc"' /tmp/teAXFodfS9/query.filter.id.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter.id.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%ID\n' -i'ID="abc"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%ID\n' -i'ID=@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.filter.id.3.txt' /tmp/teAXFodfS9/query.filter.id.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter.id.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%ID\n' -i'ID=@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.filter.id.3.txt'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%ID\n' -i'ID!="abc"' /tmp/teAXFodfS9/query.filter.id.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter.id.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%ID\n' -i'ID!="abc"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%ID\n' -i'ID!=@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.filter.id.3.txt' /tmp/teAXFodfS9/query.filter.id.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter.id.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%ID\n' -i'ID!=@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.filter.id.3.txt'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER="A"' -f'%FILTER\n' /tmp/teAXFodfS9/filter.12.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/filter.12.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER="A"' -f'%FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER~"A"' -f'%FILTER\n' /tmp/teAXFodfS9/filter.12.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/filter.12.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER~"A"' -f'%FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER="A;B"' -f'%FILTER\n' /tmp/teAXFodfS9/filter.12.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/filter.12.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER="A;B"' -f'%FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER!="A;B"' -f'%FILTER\n' /tmp/teAXFodfS9/filter.12.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/filter.12.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER!="A;B"' -f'%FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER~"A;B"' -f'%FILTER\n' /tmp/teAXFodfS9/filter.12.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/filter.12.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER~"A;B"' -f'%FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER!~"A;B"' -f'%FILTER\n' /tmp/teAXFodfS9/filter.12.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/filter.12.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER!~"A;B"' -f'%FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'DP%10==2' -f'[ %DP]\n' /tmp/teAXFodfS9/filter.10.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/filter.10.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'DP%10==2' -f'[ %DP]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'REF="N"' -f'%CHROM %POS %REF %ALT %QUAL\n' /tmp/teAXFodfS9/filter.13.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/filter.13.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'REF="N"' -f'%CHROM %POS %REF %ALT %QUAL\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -H -f'[%CHROM %POS  %SAMPLE %DP %GT\n]' /tmp/teAXFodfS9/query.header.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.header.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -H -f'[%CHROM %POS  %SAMPLE %DP %GT\n]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -H -f'[%CHROM %POS  %SAMPLE %DP %GT\t]\n' /tmp/teAXFodfS9/query.header.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.header.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -H -f'[%CHROM %POS  %SAMPLE %DP %GT\t]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -H -f'%CHROM %POS[ %SAMPLE %DP %GT]\n' /tmp/teAXFodfS9/query.header.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.header.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -H -f'%CHROM %POS[ %SAMPLE %DP %GT]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -H -f'%CHROM %POS[ %SAMPLE %DP %GT]' /tmp/teAXFodfS9/query.header.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.header.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -H -f'%CHROM %POS[ %SAMPLE %DP %GT]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -H -f'%CHROM %POS[ %SAMPLE][ %DP][ %GT]\n' /tmp/teAXFodfS9/query.header.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.header.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -H -f'%CHROM %POS[ %SAMPLE][ %DP][ %GT]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -H -f'%CHROM %POS[ %SAMPLE][ %DP][ %GT]' /tmp/teAXFodfS9/query.header.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.header.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -H -f'%CHROM %POS[ %SAMPLE][ %DP][ %GT]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -HH -f'%CHROM %POS[ %SAMPLE][ %DP][ %GT]' /tmp/teAXFodfS9/query.header.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.header.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -HH -f'%CHROM %POS[ %SAMPLE][ %DP][ %GT]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%SAMPLE %DP\n]' -i'DP=1 || DP=2' /tmp/teAXFodfS9/query.filter-or.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter-or.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%SAMPLE %DP\n]' -i'DP=1 || DP=2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%SAMPLE %DP\n]' -i'DP=1 |  DP=2' /tmp/teAXFodfS9/query.filter-or.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/query.filter-or.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%SAMPLE %DP\n]' -i'DP=1 |  DP=2'
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s /tmp/teAXFodfS9/norm.dup-end.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.dup-end.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s /tmp/teAXFodfS9/norm.dup-end.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.dup-end.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s -N10 /tmp/teAXFodfS9/norm.dup-end.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.dup-end.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s -N10 /tmp/teAXFodfS9/norm.dup-end.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.dup-end.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s -N /tmp/teAXFodfS9/norm.dup-end.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.dup-end.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s -N /tmp/teAXFodfS9/norm.dup-end.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.dup-end.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s -N0 /tmp/teAXFodfS9/norm.dup-end.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.dup-end.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s -N0 /tmp/teAXFodfS9/norm.dup-end.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.dup-end.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s -N3 /tmp/teAXFodfS9/norm.dup-end.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.dup-end.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s -N3 /tmp/teAXFodfS9/norm.dup-end.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.dup-end.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s -e 'type~"other"' /tmp/teAXFodfS9/norm.dup-end.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.dup-end.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s -e 'type~"other"' /tmp/teAXFodfS9/norm.dup-end.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.dup-end.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s /tmp/teAXFodfS9/norm.check-ref.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.check-ref.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s /tmp/teAXFodfS9/norm.check-ref.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.check-ref.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +both -i 'ID=@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.filter.txt' /tmp/teAXFodfS9/norm.filter.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +both -i 'ID=@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.filter.txt' /tmp/teAXFodfS9/norm.filter.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +both -i 'ALT!="C"' /tmp/teAXFodfS9/norm.filter.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +both -i 'ALT!="C"' /tmp/teAXFodfS9/norm.filter.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d both -i 'ID=@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.filter.txt' /tmp/teAXFodfS9/norm.filter.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d both -i 'ID=@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.filter.txt' /tmp/teAXFodfS9/norm.filter.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d both -i 'ALT!="C"' /tmp/teAXFodfS9/norm.filter.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d both -i 'ALT!="C"' /tmp/teAXFodfS9/norm.filter.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c e /tmp/teAXFodfS9/norm.6.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.2.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c e /tmp/teAXFodfS9/norm.6.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.2.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - /tmp/teAXFodfS9/norm.breakend.1.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.breakend.1.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - /tmp/teAXFodfS9/norm.breakend.1.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.breakend.1.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - /tmp/teAXFodfS9/norm.sort.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - /tmp/teAXFodfS9/norm.sort.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - -S lex /tmp/teAXFodfS9/norm.sort.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - -S lex /tmp/teAXFodfS9/norm.sort.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +both /tmp/teAXFodfS9/norm.join-missing-ploidy.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +both /tmp/teAXFodfS9/norm.join-missing-ploidy.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - --multi-overlaps . /tmp/teAXFodfS9/norm.split.5.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - --multi-overlaps . /tmp/teAXFodfS9/norm.split.5.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version  /tmp/teAXFodfS9/norm.symbolic.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.symbolic.3.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version  /tmp/teAXFodfS9/norm.symbolic.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.symbolic.3.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -cx /tmp/teAXFodfS9/norm.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -cx /tmp/teAXFodfS9/norm.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m- /tmp/teAXFodfS9/norm.split.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m- /tmp/teAXFodfS9/norm.split.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m- -a /tmp/teAXFodfS9/norm.split.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m- -a /tmp/teAXFodfS9/norm.split.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m- /tmp/teAXFodfS9/norm.split.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m- /tmp/teAXFodfS9/norm.split.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m- --force /tmp/teAXFodfS9/norm.split.3.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m- --force /tmp/teAXFodfS9/norm.split.3.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m- /tmp/teAXFodfS9/norm.split.4.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m- /tmp/teAXFodfS9/norm.split.4.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m- --keep-sum AD /tmp/teAXFodfS9/norm.split.4.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m- --keep-sum AD /tmp/teAXFodfS9/norm.split.4.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m- /tmp/teAXFodfS9/norm.split.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m- /tmp/teAXFodfS9/norm.split.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m+ /tmp/teAXFodfS9/norm.merge.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m+ /tmp/teAXFodfS9/norm.merge.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m+ /tmp/teAXFodfS9/norm.merge.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m+ /tmp/teAXFodfS9/norm.merge.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m+ /tmp/teAXFodfS9/norm.merge.3.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m+ /tmp/teAXFodfS9/norm.merge.3.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m+ -s /tmp/teAXFodfS9/norm.merge.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m+ -s /tmp/teAXFodfS9/norm.merge.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -N -c s /tmp/teAXFodfS9/norm.setref.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -N -c s /tmp/teAXFodfS9/norm.setref.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version /tmp/teAXFodfS9/norm.telomere.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version /tmp/teAXFodfS9/norm.telomere.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d snps /tmp/teAXFodfS9/norm.rmdup.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d snps /tmp/teAXFodfS9/norm.rmdup.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d indels /tmp/teAXFodfS9/norm.rmdup.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d indels /tmp/teAXFodfS9/norm.rmdup.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d both /tmp/teAXFodfS9/norm.rmdup.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d both /tmp/teAXFodfS9/norm.rmdup.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d all /tmp/teAXFodfS9/norm.rmdup.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d all /tmp/teAXFodfS9/norm.rmdup.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d none /tmp/teAXFodfS9/norm.rmdup.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d none /tmp/teAXFodfS9/norm.rmdup.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d exact /tmp/teAXFodfS9/norm.rmdup.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d exact /tmp/teAXFodfS9/norm.rmdup.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d none /tmp/teAXFodfS9/norm.rmdup.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d none /tmp/teAXFodfS9/norm.rmdup.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d exact /tmp/teAXFodfS9/norm.rmdup.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d exact /tmp/teAXFodfS9/norm.rmdup.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d indels /tmp/teAXFodfS9/norm.rmdup.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d indels /tmp/teAXFodfS9/norm.rmdup.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d any /tmp/teAXFodfS9/norm.rmdup.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d any /tmp/teAXFodfS9/norm.rmdup.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d both /tmp/teAXFodfS9/norm.rmdup.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d both /tmp/teAXFodfS9/norm.rmdup.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d snps /tmp/teAXFodfS9/norm.rmdup.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d snps /tmp/teAXFodfS9/norm.rmdup.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d exact /tmp/teAXFodfS9/norm.rmdup.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.rmdup.3.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d exact /tmp/teAXFodfS9/norm.rmdup.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.rmdup.3.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d all /tmp/teAXFodfS9/norm.rmdup.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.rmdup.3.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d all /tmp/teAXFodfS9/norm.rmdup.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.rmdup.3.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s -a --old-rec-tag XX /tmp/teAXFodfS9/norm.2.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.2.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s -a --old-rec-tag XX /tmp/teAXFodfS9/norm.2.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.2.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s --old-rec-tag XX /tmp/teAXFodfS9/norm.iupac.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.iupac.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s --old-rec-tag XX /tmp/teAXFodfS9/norm.iupac.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.iupac.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s --old-rec-tag XX /tmp/teAXFodfS9/norm.iupac.2.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.iupac.2.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s --old-rec-tag XX /tmp/teAXFodfS9/norm.iupac.2.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.iupac.2.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s --old-rec-tag XX /tmp/teAXFodfS9/norm.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.3.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s --old-rec-tag XX /tmp/teAXFodfS9/norm.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.3.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s -i'alt="N"' --old-rec-tag XX /tmp/teAXFodfS9/norm.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.3.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s -i'alt="N"' --old-rec-tag XX /tmp/teAXFodfS9/norm.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.3.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -a --old-rec-tag OLD_REC /tmp/teAXFodfS9/atomize.split.1.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m -any --force
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -a --old-rec-tag OLD_REC /tmp/teAXFodfS9/atomize.split.1.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m -any --force -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m -any --old-rec-tag OLD_REC --force /tmp/teAXFodfS9/atomize.split.1.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -a
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m -any --old-rec-tag OLD_REC --force /tmp/teAXFodfS9/atomize.split.1.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -a -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m -any --old-rec-tag OLD_REC --force -a /tmp/teAXFodfS9/atomize.split.1.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m -any --old-rec-tag OLD_REC --force -a /tmp/teAXFodfS9/atomize.split.1.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --atomize --atom-overlaps . --old-rec-tag OLD_REC /tmp/teAXFodfS9/atomize.split.1.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --atomize --atom-overlaps . --old-rec-tag OLD_REC /tmp/teAXFodfS9/atomize.split.1.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --atomize --old-rec-tag OLD_REC /tmp/teAXFodfS9/atomize.split.1.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --atomize --old-rec-tag OLD_REC /tmp/teAXFodfS9/atomize.split.1.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --atomize --old-rec-tag OLD_REC /tmp/teAXFodfS9/atomize.split.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --atomize --old-rec-tag OLD_REC /tmp/teAXFodfS9/atomize.split.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --atomize --atom-overlaps . --old-rec-tag OLD_REC /tmp/teAXFodfS9/atomize.split.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --atomize --atom-overlaps . --old-rec-tag OLD_REC /tmp/teAXFodfS9/atomize.split.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --atomize --atom-overlaps . /tmp/teAXFodfS9/atomize.split.3.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --atomize --atom-overlaps . /tmp/teAXFodfS9/atomize.split.3.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --atomize --atom-overlaps . --old-rec-tag OLD_REC /tmp/teAXFodfS9/atomize.split.4.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --atomize --atom-overlaps . --old-rec-tag OLD_REC /tmp/teAXFodfS9/atomize.split.4.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --atomize --atom-overlaps . --old-rec-tag OLD_REC -i 'ILEN=0' /tmp/teAXFodfS9/atomize.split.4.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --atomize --atom-overlaps . --old-rec-tag OLD_REC -i 'ILEN=0' /tmp/teAXFodfS9/atomize.split.4.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --atomize --old-rec-tag OLD_REC --atom-overlaps . /tmp/teAXFodfS9/atomize.split.5.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --atomize --old-rec-tag OLD_REC --atom-overlaps . /tmp/teAXFodfS9/atomize.split.5.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --atomize --old-rec-tag OLD_REC /tmp/teAXFodfS9/atomize.split.5.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --atomize --old-rec-tag OLD_REC /tmp/teAXFodfS9/atomize.split.5.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +both /tmp/teAXFodfS9/norm.4.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +both /tmp/teAXFodfS9/norm.4.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +any /tmp/teAXFodfS9/norm.4.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +any /tmp/teAXFodfS9/norm.4.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - --multi-overlaps 0 /tmp/teAXFodfS9/norm.5.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - --multi-overlaps 0 /tmp/teAXFodfS9/norm.5.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - --multi-overlaps . /tmp/teAXFodfS9/norm.5.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - --multi-overlaps . /tmp/teAXFodfS9/norm.5.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m -any /tmp/teAXFodfS9/norm.m-any.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m -any /tmp/teAXFodfS9/norm.m-any.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m -any /tmp/teAXFodfS9/norm.phased-split.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m -any /tmp/teAXFodfS9/norm.phased-split.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +any /tmp/teAXFodfS9/norm.phased-join.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +any /tmp/teAXFodfS9/norm.phased-join.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --old-rec-tag ORI /tmp/teAXFodfS9/norm.symbolic.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.symbolic.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --old-rec-tag ORI /tmp/teAXFodfS9/norm.symbolic.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.symbolic.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --old-rec-tag ORI /tmp/teAXFodfS9/norm.symbolic.2.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.symbolic.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --old-rec-tag ORI /tmp/teAXFodfS9/norm.symbolic.2.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.symbolic.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --old-rec-tag ORI /tmp/teAXFodfS9/norm.right-align.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.right-align.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --old-rec-tag ORI /tmp/teAXFodfS9/norm.right-align.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.right-align.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --old-rec-tag ORI -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.right-align.gff /tmp/teAXFodfS9/norm.right-align.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.right-align.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --old-rec-tag ORI -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.right-align.gff /tmp/teAXFodfS9/norm.right-align.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.right-align.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --old-rec-tag ORI -a -m -any /tmp/teAXFodfS9/norm.atom-split-norm.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.atom-split-norm.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --old-rec-tag ORI -a -m -any /tmp/teAXFodfS9/norm.atom-split-norm.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.atom-split-norm.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m -any /tmp/teAXFodfS9/norm.string-tags.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m -any /tmp/teAXFodfS9/norm.string-tags.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - /tmp/teAXFodfS9/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +both
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - /tmp/teAXFodfS9/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +both -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - /tmp/teAXFodfS9/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +indels
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - /tmp/teAXFodfS9/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +indels -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - /tmp/teAXFodfS9/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +snps
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - /tmp/teAXFodfS9/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +snps -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - /tmp/teAXFodfS9/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +snps
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - /tmp/teAXFodfS9/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +snps -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - /tmp/teAXFodfS9/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +any
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - /tmp/teAXFodfS9/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +any -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - -i 'type="snp"' /tmp/teAXFodfS9/norm.split.merge.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - -i 'type="snp"' /tmp/teAXFodfS9/norm.split.merge.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +any /tmp/teAXFodfS9/norm.merge.4.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +any /tmp/teAXFodfS9/norm.merge.4.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +both /tmp/teAXFodfS9/norm.merge.4.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +both /tmp/teAXFodfS9/norm.merge.4.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -Hv ref /tmp/teAXFodfS9/view.types.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -Hv snps /tmp/teAXFodfS9/view.types.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -Hv mnps /tmp/teAXFodfS9/view.types.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -Hv indels /tmp/teAXFodfS9/view.types.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -Hv other /tmp/teAXFodfS9/view.types.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -Hv bnd /tmp/teAXFodfS9/view.types.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -Hv overlap /tmp/teAXFodfS9/view.types.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -Hi 'MAC>=2' /tmp/teAXFodfS9/filter.mac.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -Hi 'MAF>=0.09' /tmp/teAXFodfS9/filter.mac.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -Hi 'MAF*AN>=2' /tmp/teAXFodfS9/filter.mac.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -i 'INFO/TAG=@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.string.1.txt' /tmp/teAXFodfS9/filter.string.1.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -i 'INFO/TAG=@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.string.1.txt' /tmp/teAXFodfS9/filter.string.1.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -i 'FMT/TAG=@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.string.1.txt' /tmp/teAXFodfS9/filter.string.1.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -i 'FMT/TAG=@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.string.1.txt' /tmp/teAXFodfS9/filter.string.1.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -HA /tmp/teAXFodfS9/merge.gvcf.2.a.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -HAA /tmp/teAXFodfS9/merge.gvcf.2.a.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version  /tmp/teAXFodfS9/weird-chr-names.vcf.gz -r 1
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob  /tmp/teAXFodfS9/weird-chr-names.vcf.gz -r 1 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version  /tmp/teAXFodfS9/weird-chr-names.vcf.gz -r 1:1-2
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob  /tmp/teAXFodfS9/weird-chr-names.vcf.gz -r 1:1-2 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version  /tmp/teAXFodfS9/weird-chr-names.vcf.gz -r 1:1,1:2
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob  /tmp/teAXFodfS9/weird-chr-names.vcf.gz -r 1:1,1:2 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version  /tmp/teAXFodfS9/weird-chr-names.vcf.gz -r 1:1-1
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob  /tmp/teAXFodfS9/weird-chr-names.vcf.gz -r 1:1-1 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version  /tmp/teAXFodfS9/weird-chr-names.vcf.gz -r {1:1}
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob  /tmp/teAXFodfS9/weird-chr-names.vcf.gz -r {1:1} | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version  /tmp/teAXFodfS9/weird-chr-names.vcf.gz -r {1:1}:1-2
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob  /tmp/teAXFodfS9/weird-chr-names.vcf.gz -r {1:1}:1-2 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version  /tmp/teAXFodfS9/weird-chr-names.vcf.gz -r {1:1}:1,{1:1}:2
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob  /tmp/teAXFodfS9/weird-chr-names.vcf.gz -r {1:1}:1,{1:1}:2 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version  /tmp/teAXFodfS9/weird-chr-names.vcf.gz -r {1:1}:1-1
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob  /tmp/teAXFodfS9/weird-chr-names.vcf.gz -r {1:1}:1-1 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version  /tmp/teAXFodfS9/weird-chr-names.vcf.gz -r {1:1-1}
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob  /tmp/teAXFodfS9/weird-chr-names.vcf.gz -r {1:1-1} | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version  /tmp/teAXFodfS9/weird-chr-names.vcf.gz -r {1:1-1}:1-2
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob  /tmp/teAXFodfS9/weird-chr-names.vcf.gz -r {1:1-1}:1-2 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version  /tmp/teAXFodfS9/weird-chr-names.vcf.gz -r {1:1-1}:1,{1:1-1}:2
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob  /tmp/teAXFodfS9/weird-chr-names.vcf.gz -r {1:1-1}:1,{1:1-1}:2 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version  /tmp/teAXFodfS9/weird-chr-names.vcf.gz -r {1:1-1}:1-1
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob  /tmp/teAXFodfS9/weird-chr-names.vcf.gz -r {1:1-1}:1-1 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version  /tmp/teAXFodfS9/weird-chr-names.vcf.gz -r {1:1-1}-2
.. ok, expected non-zero status

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob  /tmp/teAXFodfS9/weird-chr-names.vcf.gz -r {1:1-1}-2 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok, expected non-zero status

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -aUc1 -C1 -s NA00002 -v snps /tmp/teAXFodfS9/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -aUc1 -C1 -s NA00002 -v snps /tmp/teAXFodfS9/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -f PASS -Xks NA00003 /tmp/teAXFodfS9/view.vcf.gz -r20,Y
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -f PASS -Xks NA00003 /tmp/teAXFodfS9/view.vcf.gz -r20,Y | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -xs NA00003 /tmp/teAXFodfS9/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -xs NA00003 /tmp/teAXFodfS9/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -i 'QUAL==999 && (FS<20 || FS>=41.02) && ICF>-0.1 && HWE*2>1.2' /tmp/teAXFodfS9/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -i 'QUAL==999 && (FS<20 || FS>=41.02) && ICF>-0.1 && HWE*2>1.2' /tmp/teAXFodfS9/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -p /tmp/teAXFodfS9/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -p /tmp/teAXFodfS9/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -P /tmp/teAXFodfS9/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -P /tmp/teAXFodfS9/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -hm2 -M2 -q0.3 -Q0.7 /tmp/teAXFodfS9/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -hm2 -M2 -q0.3 -Q0.7 /tmp/teAXFodfS9/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -Hu /tmp/teAXFodfS9/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -GVsnps /tmp/teAXFodfS9/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -GVsnps /tmp/teAXFodfS9/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -ne 'INDEL=1 || PV4[0]<0.006' /tmp/teAXFodfS9/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -ne 'INDEL=1 || PV4[0]<0.006' /tmp/teAXFodfS9/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -s ^NA00003 /tmp/teAXFodfS9/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -s ^NA00003 /tmp/teAXFodfS9/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version  /tmp/teAXFodfS9/view.omitgenotypes.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob  /tmp/teAXFodfS9/view.omitgenotypes.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -G /tmp/teAXFodfS9/view.omitgenotypes.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -G /tmp/teAXFodfS9/view.omitgenotypes.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -HG /tmp/teAXFodfS9/view.omitgenotypes.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -a /tmp/teAXFodfS9/many.alleles.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -a /tmp/teAXFodfS9/many.alleles.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -asA /tmp/teAXFodfS9/view.vectors.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -asA /tmp/teAXFodfS9/view.vectors.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -asB /tmp/teAXFodfS9/view.vectors.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -asB /tmp/teAXFodfS9/view.vectors.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -asA /tmp/teAXFodfS9/view.vectors.2.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -asA /tmp/teAXFodfS9/view.vectors.2.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -i'FMT/FGS[*:0]="AAAAAA"' /tmp/teAXFodfS9/view.filter.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -i'FMT/FGS[*:2]="C"' /tmp/teAXFodfS9/view.filter.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -i'FMT/FGS[*:4]="EE"' /tmp/teAXFodfS9/view.filter.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -i'FMT/FRS[*:1]="BB"' /tmp/teAXFodfS9/view.filter.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -i'TXT0="text"' /tmp/teAXFodfS9/view.filter.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -T /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.chrs.tab /tmp/teAXFodfS9/view.chrs.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -T /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.chrs.tab /tmp/teAXFodfS9/view.chrs.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -i 'POS>=3062917' /tmp/teAXFodfS9/filter.2.vcf.gz 1:3062917-3157410
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -i 'POS>=3062917' /tmp/teAXFodfS9/filter.2.vcf.gz 1:3062917-3157410 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -r 1:10,1:12,1:10 /tmp/teAXFodfS9/idx.1.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -r 1:1172777-1172804,1:1172806-1172808 /tmp/teAXFodfS9/idx.2.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -R /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/idx.2.bed /tmp/teAXFodfS9/idx.2.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -R /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/idx.3.bed /tmp/teAXFodfS9/idx.3.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -R /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/idx.4.bed /tmp/teAXFodfS9/idx.4.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -Ht 2 /tmp/teAXFodfS9/view-t.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -Ht 3 /tmp/teAXFodfS9/view-t.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -r chr1:100-200 --regions-overlap 0 /tmp/teAXFodfS9/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -r chr1:100-200 --regions-overlap 1 /tmp/teAXFodfS9/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -r chr1:100-200 --regions-overlap 2 /tmp/teAXFodfS9/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -t chr1:100-200 --targets-overlap 0 /tmp/teAXFodfS9/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -t chr1:100-200 --targets-overlap 1 /tmp/teAXFodfS9/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -t chr1:100-200 --targets-overlap 2 /tmp/teAXFodfS9/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -t ^chr1:100-200 --targets-overlap 0 /tmp/teAXFodfS9/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -t ^chr1:100-200 --targets-overlap 1 /tmp/teAXFodfS9/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -t ^chr1:100-200 --targets-overlap 2 /tmp/teAXFodfS9/overlap.vcf.gz 
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view64bit.1.vcf -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view64bit.1.vcf     | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view64bit.1.vcf -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view64bit.2.vcf -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view64bit.2.vcf     | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view64bit.2.vcf -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view64bit.3.vcf -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view64bit.3.vcf     | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view64bit.4.vcf -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view64bit.4.vcf     | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view64bit.4.vcf -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view64bit.5.vcf -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view64bit.5.vcf     | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view64bit.5.vcf -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -C5:nonmajor /tmp/teAXFodfS9/view.minmaxac.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -c6:nonmajor /tmp/teAXFodfS9/view.minmaxac.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -q0.3:major /tmp/teAXFodfS9/view.minmaxac.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -i 'Gene.refGene=="RAD21L1"' /tmp/teAXFodfS9/view.filter.annovar.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -i 'Gene.refGene~"NOD"' /tmp/teAXFodfS9/view.filter.annovar.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -i 'LJB2_MutationTaster=="0.291000"' /tmp/teAXFodfS9/view.filter.annovar.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -a /tmp/teAXFodfS9/view-a.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -T /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.sites.txt /tmp/teAXFodfS9/view.sites.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -T /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.sites.txt /tmp/teAXFodfS9/view.sites.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -T /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.sites.txt.gz /tmp/teAXFodfS9/view.sites.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -T /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.sites.txt.gz /tmp/teAXFodfS9/view.sites.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools head /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools head -h 0 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools head -h 1 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools head -h 5 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools head -h 22 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools head -h 23 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools head -n 0 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools head -n 1 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools head -n 5 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools head -h 5 -n 5 < /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.2.vcf
.. ok

test_vcf_head2:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools head -s0 /tmp/teAXFodfS9/mpileup.2.vcf.gz
.. ok

test_vcf_head2:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -Ob /tmp/teAXFodfS9/mpileup.2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools head -s0
.. ok

test_vcf_head2:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools head -s1 /tmp/teAXFodfS9/mpileup.2.vcf.gz
.. ok

test_vcf_head2:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -Ob /tmp/teAXFodfS9/mpileup.2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools head -s1
.. ok

test_vcf_head2:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools head -s2 -h2 /tmp/teAXFodfS9/mpileup.2.vcf.gz
.. ok

test_vcf_head2:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -Ob /tmp/teAXFodfS9/mpileup.2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools head -s2 -h2
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -m -s sample1 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/samples.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -m -s sample1 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/samples.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -m -s ^sample2,sample3 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/samples.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -m -s ^sample2,sample3 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/samples.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -m -s sample3 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/samples.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -m -s sample3 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/samples.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -m -s ^sample1,sample2 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/samples.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -m -s ^sample1,sample2 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/samples.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -m --ploidy-file /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call-ploidy.1.txt -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call-ploidy.1.ped /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call-ploidy.1.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -m --ploidy-file /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call-ploidy.1.txt -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call-ploidy.1.ped /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call-ploidy.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mv /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mv /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mg0 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mg0 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mv -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.3.samples /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mv -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.3.samples /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mv -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.4.samples /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mv -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.4.samples /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mv -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.5.samples /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mv -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.5.samples /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mv --ploidy-file /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.samples /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.X.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mv --ploidy-file /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.samples /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.X.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mv --ploidy-file /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.ped /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.X.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mv --ploidy-file /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.ped /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.X.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mv --ploidy-file /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.2.samples /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.X.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mv --ploidy-file /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.2.samples /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.X.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mv /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.NA19213.NA19129.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mv /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.NA19213.NA19129.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mv -G - --group-samples-tag AD /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.NA19213.NA19129.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mv -G - --group-samples-tag AD /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.NA19213.NA19129.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mv /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.hwe.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mv /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.hwe.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mv -G - --group-samples-tag AD /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.hwe.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mv -G - --group-samples-tag AD /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.hwe.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mv -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.hwe.samples --group-samples-tag AD /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.hwe.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mv -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.hwe.samples --group-samples-tag AD /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.hwe.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mA -C alleles -T /tmp/teAXFodfS9/mpileup.tab.gz  /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mA -C alleles -T /tmp/teAXFodfS9/mpileup.tab.gz  /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mA -C alleles -T /tmp/teAXFodfS9/mpileup.2.tab.gz  /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.2.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mA -C alleles -T /tmp/teAXFodfS9/mpileup.2.tab.gz  /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mA -C alleles -T /tmp/teAXFodfS9/mpileup.3.tab.gz -i /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.3.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mA -C alleles -T /tmp/teAXFodfS9/mpileup.3.tab.gz -i /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mA -C alleles -T /tmp/teAXFodfS9/mpileup.4.tab.gz -i /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.3.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mA -C alleles -T /tmp/teAXFodfS9/mpileup.4.tab.gz -i /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mA -C alleles -T /tmp/teAXFodfS9/mpileup.5.tab.gz -i /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.3.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mA -C alleles -T /tmp/teAXFodfS9/mpileup.5.tab.gz -i /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mA -C alleles -T /tmp/teAXFodfS9/mpileup.6.tab.gz -i /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.4.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mA -C alleles -T /tmp/teAXFodfS9/mpileup.6.tab.gz -i /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.4.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mA -C alleles -T /tmp/teAXFodfS9/mpileup.7.tab.gz -i /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.5.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mA -C alleles -T /tmp/teAXFodfS9/mpileup.7.tab.gz -i /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.5.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mA -C alleles -T /tmp/teAXFodfS9/mpileup.cals.1.tab.gz  /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.cals.1.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mA -C alleles -T /tmp/teAXFodfS9/mpileup.cals.1.tab.gz  /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.cals.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mA -C alleles -T /tmp/teAXFodfS9/mpileup.cals.2.tab.gz  /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.cals.2.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mA -C alleles -T /tmp/teAXFodfS9/mpileup.cals.2.tab.gz  /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.cals.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -cv /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.c.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -cv /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.c.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -cv --ploidy-file /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.samples /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.c.X.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -cv --ploidy-file /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.samples /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.c.X.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -cv --ploidy-file /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.ped /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.c.X.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -cv --ploidy-file /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.ped /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.c.X.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -cv --ploidy-file /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.2.samples /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.c.X.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -cv --ploidy-file /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.2.samples /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.c.X.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mv /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call-G.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mv /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call-G.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mv -G - --group-samples-tag AD /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call-G.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mv -G - --group-samples-tag AD /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call-G.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mv -F AN_POP,AC_POP /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call-G.2.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mv -F AN_POP,AC_POP /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call-G.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -m /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call.af-fixation.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -m /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call.af-fixation.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -m -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call.af-fixation.txt /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call.af-fixation.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -m -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call.af-fixation.txt /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call.af-fixation.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -m -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call.af-fixation.txt -a GP,GQ /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call.af-fixation.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -m -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call.af-fixation.txt -a GP,GQ /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call.af-fixation.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S. -e'TXT0="text"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.filter.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S. -e'TXT0="text"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.filter.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S. -e'FMT/FRS[*:1]="BB"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.filter.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S. -e'FMT/FRS[*:1]="BB"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.filter.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S. -e'FMT/FGS[*:0]="AAAAAA"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.filter.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S. -e'FMT/FGS[*:0]="AAAAAA"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.filter.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S. -e'FMT/FGS[*:1]="BBB"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.filter.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S. -e'FMT/FGS[*:1]="BBB"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.filter.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S. -e'FMT/FGS[*:4]="EE"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.filter.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S. -e'FMT/FGS[*:4]="EE"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.filter.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S. -e'FMT/STR="XX"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.filter.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S. -e'FMT/STR="XX"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.filter.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S. -e'FMT/FILTER="aaa"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.filter.2.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S. -e'FMT/FILTER="aaa"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -mx -g2 -G2 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.1.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -mx -g2 -G2 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -e'QUAL==59.2 || (INDEL=0 & (FMT/GQ=25 | FMT/DP=10))' -sModified -S. /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -e'QUAL==59.2 || (INDEL=0 & (FMT/GQ=25 | FMT/DP=10))' -sModified -S. /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -e'INFO/DP=19' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -e'INFO/DP=19' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -e'INFO/DP=19' -s XX /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -e'INFO/DP=19' -s XX /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -e'INFO/DP=19' -s XX -m+ /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -e'INFO/DP=19' -s XX -m+ /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -e'INFO/DP=19' -s XX -mx /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -e'INFO/DP=19' -s XX -mx /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -e'INFO/DP=19' -s XX -m+x /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -e'INFO/DP=19' -s XX -m+x /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -e'FMT/GT="0/2"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -e'FMT/GT="0/2"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -e'FMT/GT="0/2"' -s XX /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -e'FMT/GT="0/2"' -s XX /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -e'FMT/GT="0/2"' -s XX -m+ /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -e'FMT/GT="0/2"' -s XX -m+ /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -e'FMT/GT="0/2"' -s XX -mx /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -e'FMT/GT="0/2"' -s XX -mx /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -e'FMT/GT="0/2"' -s XX -m+x /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -e'FMT/GT="0/2"' -s XX -m+x /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'FMT/GT="0/0" && AC[*]=2' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%AC[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'FMT/GT="0/0" && AC[*]=2' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%AC[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'AC[*]=2 && FMT/GT="0/0"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%AC[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'AC[*]=2 && FMT/GT="0/0"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%AC[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'ALT="."' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%AC[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'ALT="."' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%AC[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -i 'FORMAT/TEST3<25' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.4.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -i 'FORMAT/TEST3<25' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.4.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -i 'FORMAT/TEST4<25' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.4.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -i 'FORMAT/TEST4<25' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.4.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'GT="A"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'GT="A"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'GT="RR"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'GT="RR"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'GT="RA"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'GT="RA"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'GT="AR"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'GT="AR"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'GT="AA"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'GT="AA"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'GT="aA"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'GT="aA"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'GT="Aa"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'GT="Aa"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'GT="HOM"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'GT="HOM"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'GT="HET"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'GT="HET"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'GT="HAP"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'GT="HAP"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'AD[:1]=11' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'AD[:1]=11' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'AD[1:]=11' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'AD[1:]=11' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'FR[0:1]=11' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%FR]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'FR[0:1]=11' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%FR]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'AD[*]="."' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'AD[*]="."' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'AD[0:0]=="."' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'AD[0:0]=="."' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'AD[0:0]!="."' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'AD[0:0]!="."' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'QUAL=="."' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%QUAL\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'QUAL=="."' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%QUAL\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'N_PASS(DP>32)=1' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '[%POS\t%SAMPLE\t%DP\n]'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'N_PASS(DP>32)=1' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '[%POS\t%SAMPLE\t%DP\n]'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'F_PASS(DP>32)=0.5' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '[%POS\t%SAMPLE\t%DP\n]'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'F_PASS(DP>32)=0.5' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '[%POS\t%SAMPLE\t%DP\n]'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'F_MISSING>=1/5' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'F_MISSING>=1/5' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'F_MISSING>=0.2' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'F_MISSING>=0.2' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'F_PASS(GT=="mis")>=1/5' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'F_PASS(GT=="mis")>=1/5' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'F_PASS(GT=="mis")>=0.2' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'F_PASS(GT=="mis")>=0.2' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -mx -s + -g2:mnp,indel,other /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.7.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -mx -s + -g2:mnp,indel,other /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.7.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'FORMAT/AO==4' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'FORMAT/AO==4' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'MAX(FORMAT/AO[0:])==4' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'MAX(FORMAT/AO[0:])==4' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'MAX(FORMAT/AO)==4' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'MAX(FORMAT/AO)==4' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'MIN(FORMAT/AO[0:])==3' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'MIN(FORMAT/AO[0:])==3' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'MIN(FORMAT/AO)==2' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'MIN(FORMAT/AO)==2' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'MIN(FORMAT/AO[0:])==3' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'MIN(FORMAT/AO[0:])==3' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'AVG(FORMAT/AO[2:])==4' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'AVG(FORMAT/AO[2:])==4' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'MEDIAN(FORMAT/AO[2:])==4' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'MEDIAN(FORMAT/AO[2:])==4' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'STDEV(FORMAT/AO[0:])=0.5' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'STDEV(FORMAT/AO[0:])=0.5' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'SUM(FORMAT/AO[0:])=7' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'SUM(FORMAT/AO[0:])=7' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'SMPL_MAX(FORMAT/AO)==4' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'SMPL_MAX(FORMAT/AO)==4' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'sMIN(FORMAT/AO)==2' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'sMIN(FORMAT/AO)==2' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'ABS(sAVG(FORMAT/AO)-3.66666)<1e-5' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'ABS(sAVG(FORMAT/AO)-3.66666)<1e-5' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'sMEDIAN(FORMAT/AO)==4' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'sMEDIAN(FORMAT/AO)==4' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'ABS(sSTDEV(FORMAT/AO)-1.2472191)<1e-5' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'ABS(sSTDEV(FORMAT/AO)-1.2472191)<1e-5' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'sSUM(FORMAT/AO)==11' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'sSUM(FORMAT/AO)==11' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i 'QUAL/FMT/AD==55' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.9.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i 'QUAL/FMT/AD==55' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.9.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i 'QUAL/INFO/AD==10' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.9.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i 'QUAL/INFO/AD==10' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.9.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'ABS(SMPL_MAX(FORMAT/AO))=5' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'ABS(SMPL_MAX(FORMAT/AO))=5' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'PHRED(AO[1:])>-4' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'PHRED(AO[1:])>-4' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'ABS(AO[1:])==2' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'ABS(AO[1:])==2' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i 'sum(AD[*]) > FORMAT/DP' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.10.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i 'sum(AD[*]) > FORMAT/DP' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.10.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i 'FORMAT/DP < sum(AD[*])' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.10.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i 'FORMAT/DP < sum(AD[*])' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.10.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i 'sum(AD[*]) < FORMAT/DP' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.10.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i 'sum(AD[*]) < FORMAT/DP' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.10.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i 'FORMAT/DP > sum(AD[*])' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.10.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i 'FORMAT/DP > sum(AD[*])' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.10.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter --soft-filter xxx --mask 2:1005-1008 --mask-overlap 0 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.1.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob --soft-filter xxx --mask 2:1005-1008 --mask-overlap 0 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter --soft-filter xxx --mask 2:1005-1008 --mask-overlap 1 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.1.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob --soft-filter xxx --mask 2:1005-1008 --mask-overlap 1 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter --soft-filter xxx --mask 2:1005-1008 --mask-overlap 2 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.1.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob --soft-filter xxx --mask 2:1005-1008 --mask-overlap 2 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter --soft-filter xxx --mask ^2:1005-1008 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.1.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob --soft-filter xxx --mask ^2:1005-1008 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_sort:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools sort -m 0 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/sort.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM\t%POS\t%REF,%ALT\n'
.. ok

test_vcf_sort:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools sort -Ob -m 0 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/sort.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM\t%POS\t%REF,%ALT\n'
.. ok

test_vcf_sort:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools sort -m 1000 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/sort.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM\t%POS\t%REF,%ALT\n'
.. ok

test_vcf_sort:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools sort -Ob -m 1000 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/sort.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM\t%POS\t%REF,%ALT\n'
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/regions.tab /tmp/teAXFodfS9/regions.vcf.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/regions.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/regions.tab
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM %POS %REF,%ALT\n' -R /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/regions.tab /tmp/teAXFodfS9/regions.vcf.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/teAXFodfS9/regions.tab.gz /tmp/teAXFodfS9/regions.vcf.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/regions.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/teAXFodfS9/regions.tab.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM %POS %REF,%ALT\n' -R /tmp/teAXFodfS9/regions.tab.gz /tmp/teAXFodfS9/regions.vcf.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/teAXFodfS9/regions.bed /tmp/teAXFodfS9/regions.vcf.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/regions.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/teAXFodfS9/regions.bed
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM %POS %REF,%ALT\n' -R /tmp/teAXFodfS9/regions.bed /tmp/teAXFodfS9/regions.vcf.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/teAXFodfS9/regions.bed.gz /tmp/teAXFodfS9/regions.vcf.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/regions.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/teAXFodfS9/regions.bed.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM %POS %REF,%ALT\n' -R /tmp/teAXFodfS9/regions.bed.gz /tmp/teAXFodfS9/regions.vcf.gz
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annotate.pipes.tab.gz  -c CHROM,POS,REF,ALT,SRC,FF,II /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.pipes.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annotate.pipes.tab.gz  -c CHROM,POS,REF,ALT,SRC,FF,II /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.pipes.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annotate.pipes.tab.gz  -c CHROM,POS,REF,ALT,SRC,FF,II -k -i 'SRC={SRC}' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.pipes.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annotate.pipes.tab.gz  -c CHROM,POS,REF,ALT,SRC,FF,II -k -i 'SRC={SRC}' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.pipes.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annotate.AR.tab.gz  -c CHROM,POS,REF,ALT,+INFO/IA,+INFO/FA,+INFO/IR,+INFO/FR /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.AR.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annotate.AR.tab.gz  -c CHROM,POS,REF,ALT,+INFO/IA,+INFO/FA,+INFO/IR,+INFO/FR /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.AR.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annotate.AR.tab.gz  -c CHROM,POS,REF,ALT,INFO/IA,INFO/FA,INFO/IR,INFO/FR /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.AR.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annotate.AR.tab.gz  -c CHROM,POS,REF,ALT,INFO/IA,INFO/FA,INFO/IR,INFO/FR /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.AR.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annotate.int.src.vcf.gz  -c +INFO/IA,+INFO/IR /tmp/teAXFodfS9/annotate.int.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annotate.int.src.vcf.gz  -c +INFO/IA,+INFO/IR /tmp/teAXFodfS9/annotate.int.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate   -c INFO/ii:=INFO/XX /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.rename.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob   -c INFO/ii:=INFO/XX /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.rename.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate   -c FORMAT/ff:=FORMAT/XX /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.rename.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob   -c FORMAT/ff:=FORMAT/XX /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.rename.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annots36.bed.gz  -c CHROM,POS,-,~X,-,AF,-,-,- -i'SVTYPE={X}' -k /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate36.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annots36.bed.gz  -c CHROM,POS,-,~X,-,AF,-,-,- -i'SVTYPE={X}' -k /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate36.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annots36.bed.gz  -c CHROM,BEG,END,~X,-,AF,-,-,- -i'SVTYPE={X}' -k /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate36.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annots36.bed.gz  -c CHROM,BEG,END,~X,-,AF,-,-,- -i'SVTYPE={X}' -k /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate36.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annots35.vcf.gz  -c CHROM,POS,~ID,REF,ALT,INFO/src /tmp/teAXFodfS9/annotate35.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annots35.vcf.gz  -c CHROM,POS,~ID,REF,ALT,INFO/src /tmp/teAXFodfS9/annotate35.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annotate.escape.1.tab.gz  -c CHROM,POS,ISTR,FMT/FSTR /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.escape.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annotate.escape.1.tab.gz  -c CHROM,POS,ISTR,FMT/FSTR /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.escape.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annotate.match.1.tab.gz  -c CHROM,POS,-,-,SCORE,~X,-,- -i'STR={X}' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.match.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annotate.match.1.tab.gz  -c CHROM,POS,-,-,SCORE,~X,-,- -i'STR={X}' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.match.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annotate.match.1.tab.gz  -c CHROM,POS,REF,ALT,SCORE,-,~X,- -i'INT={X}' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.match.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annotate.match.1.tab.gz  -c CHROM,POS,REF,ALT,SCORE,-,~X,- -i'INT={X}' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.match.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annotate.match.1.tab.gz  -c CHROM,POS,REF,ALT,SCORE,-,-,~X -i'FLT={X}' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.match.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annotate.match.1.tab.gz  -c CHROM,POS,REF,ALT,SCORE,-,-,~X -i'FLT={X}' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.match.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annotate.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.hdr -c CHROM,POS,REF,ALT,ID,QUAL,INFO/T_INT,INFO/T_FLOAT,INDEL /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annotate.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.hdr -c CHROM,POS,REF,ALT,ID,QUAL,INFO/T_INT,INFO/T_FLOAT,INDEL /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annotate2.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.hdr -c CHROM,POS,-,T_STR /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annotate2.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.hdr -c CHROM,POS,-,T_STR /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annotate2.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.hdr -c CHROM,FROM,TO,T_STR /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annotate2.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.hdr -c CHROM,FROM,TO,T_STR /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annots.vcf.gz  -c STR,ID,QUAL,FILTER /tmp/teAXFodfS9/annotate.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annots.vcf.gz  -c STR,ID,QUAL,FILTER /tmp/teAXFodfS9/annotate.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annots2.vcf.gz  -c ID,QUAL,FILTER,INFO,FMT /tmp/teAXFodfS9/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annots2.vcf.gz  -c ID,QUAL,FILTER,INFO,FMT /tmp/teAXFodfS9/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s A /tmp/teAXFodfS9/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s A /tmp/teAXFodfS9/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s "A B" /tmp/teAXFodfS9/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s "A B" /tmp/teAXFodfS9/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s "A C" /tmp/teAXFodfS9/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s "A C" /tmp/teAXFodfS9/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s "B C" /tmp/teAXFodfS9/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s "B C" /tmp/teAXFodfS9/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate   -x ID,QUAL,^FILTER/fltA,FILTER/fltB,^INFO/AA,INFO/BB,^FMT/GT,FMT/PL /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob   -x ID,QUAL,^FILTER/fltA,FILTER/fltB,^INFO/AA,INFO/BB,^FMT/GT,FMT/PL /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate   -x FORMAT /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob   -x FORMAT /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annots4.vcf.gz  -c +INFO /tmp/teAXFodfS9/annotate4.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annots4.vcf.gz  -c +INFO /tmp/teAXFodfS9/annotate4.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annots4.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate4.hdr -c CHROM,POS,REF,ALT,+FA,+FR,+IA,+IR,+SA,+SR /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate4.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annots4.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate4.hdr -c CHROM,POS,REF,ALT,+FA,+FR,+IA,+IR,+SA,+SR /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate4.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annots10.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate10.hdr -c CHROM,POS,FMT/FINT,FMT/FFLT,FMT/FSTR /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate10.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annots10.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate10.hdr -c CHROM,POS,FMT/FINT,FMT/FFLT,FMT/FSTR /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate10.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annots2.vcf.gz  -c CHROM,POS,FMT/FINT,FMT/FFLT,FMT/FSTR -s A /tmp/teAXFodfS9/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annots2.vcf.gz  -c CHROM,POS,FMT/FINT,FMT/FFLT,FMT/FSTR -s A /tmp/teAXFodfS9/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annots11.tab.gz  -c CHROM,POS,FMT/FINT,FMT/FFLT,FMT/FSTR -s A /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annots11.tab.gz  -c CHROM,POS,FMT/FINT,FMT/FFLT,FMT/FSTR -s A /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annots2.vcf.gz  -c AAA:=IINT,FMT/BBB:=FMT/FINT /tmp/teAXFodfS9/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annots2.vcf.gz  -c AAA:=IINT,FMT/BBB:=FMT/FINT /tmp/teAXFodfS9/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annots2.vcf.gz  -x INFO -c INFO/IINT /tmp/teAXFodfS9/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annots2.vcf.gz  -x INFO -c INFO/IINT /tmp/teAXFodfS9/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annots2.vcf.gz  -x INFO -c INFO/IINT -e'POS=3000001' -k /tmp/teAXFodfS9/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annots2.vcf.gz  -x INFO -c INFO/IINT -e'POS=3000001' -k /tmp/teAXFodfS9/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annots11.vcf.gz  -c FMT /tmp/teAXFodfS9/annotate11.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annots11.vcf.gz  -c FMT /tmp/teAXFodfS9/annotate11.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annots2.vcf.gz  -c FMT/newGT:=GT /tmp/teAXFodfS9/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annots2.vcf.gz  -c FMT/newGT:=GT /tmp/teAXFodfS9/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annots12.vcf.gz  -c FMT/GT:=newGT /tmp/teAXFodfS9/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annots12.vcf.gz  -c FMT/GT:=newGT /tmp/teAXFodfS9/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annots13.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate13.hdr -c CHROM,BEG,END,ABC /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate13.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annots13.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate13.hdr -c CHROM,BEG,END,ABC /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate13.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annots13.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate13.hdr -c CHROM,BEG,END,ABC -l ABC:append /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate13.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annots13.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate13.hdr -c CHROM,BEG,END,ABC -l ABC:append /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate13.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annots13.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate13.hdr -c CHROM,BEG,END,ABC -l ABC:unique /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate13.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annots13.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate13.hdr -c CHROM,BEG,END,ABC -l ABC:unique /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate13.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate   -x FILTER/XX,INFO/XX --force /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate14.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob   -x FILTER/XX,INFO/XX --force /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate14.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annotate15.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate15.hdr -s SAMPLE1 -c CHROM,FROM,TO,FMT/FOO,BAR /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate15.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annotate15.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate15.hdr -s SAMPLE1 -c CHROM,FROM,TO,FMT/FOO,BAR /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate15.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annotate15.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate15.hdr -s SAMPLE2 -c CHROM,FROM,TO,FMT/FOO,BAR /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate15.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annotate15.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate15.hdr -s SAMPLE2 -c CHROM,FROM,TO,FMT/FOO,BAR /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate15.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annotate15.tab.gz  -s SAMPLE2 -c CHROM,FROM,TO,FMT/FOO,BAR -H '##FORMAT=<ID=FOO,Number=1,Type=String,Description="Some description">' -H '##INFO=<ID=BAR,Number=1,Type=Integer,Description="Some description">' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate15.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annotate15.tab.gz  -s SAMPLE2 -c CHROM,FROM,TO,FMT/FOO,BAR -H '##FORMAT=<ID=FOO,Number=1,Type=String,Description="Some description">' -H '##INFO=<ID=BAR,Number=1,Type=Integer,Description="Some description">' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate15.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate   -x FILTER /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate16.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob   -x FILTER /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate16.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annotate17.1.tab.gz  -c CHROM,BEG,END,A,B -l A:append,B:append /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate17.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annotate17.1.tab.gz  -c CHROM,BEG,END,A,B -l A:append,B:append /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate17.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annotate17.1.tab.gz  -c CHROM,BEG,END,A,B -l A:append,B:append /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate17.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annotate17.1.tab.gz  -c CHROM,BEG,END,A,B -l A:append,B:append /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate17.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annotate17.3.tab.gz  -c CHROM,BEG,END,A,B -l A:append,B:append /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate17.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annotate17.3.tab.gz  -c CHROM,BEG,END,A,B -l A:append,B:append /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate17.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annotate18.1.tab.gz  -c CHROM,BEG,END,A,B,C,D,E -l A:sum,B:avg,C:min,D:max,E:append /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate18.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annotate18.1.tab.gz  -c CHROM,BEG,END,A,B,C,D,E -l A:sum,B:avg,C:min,D:max,E:append /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate18.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annotate18.2.tab.gz  -c CHROM,BEG,END,A,B,C,D,E -l A:sum,B:avg,C:min,D:max,E:append /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate18.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annotate18.2.tab.gz  -c CHROM,BEG,END,A,B,C,D,E -l A:sum,B:avg,C:min,D:max,E:append /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate18.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annotate19.src.vcf.gz  -c INFO/ID:=ID,INFO/INFO_ID:=INFO/ID,ID,=ID:=INFO/ID /tmp/teAXFodfS9/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annotate19.src.vcf.gz  -c INFO/ID:=ID,INFO/INFO_ID:=INFO/ID,ID,=ID:=INFO/ID /tmp/teAXFodfS9/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annotate19.src.vcf.gz  -c FILTER,INFO/FILTER:=FILTER,INFO/INFO_FILTER:=INFO/FILTER /tmp/teAXFodfS9/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annotate19.src.vcf.gz  -c FILTER,INFO/FILTER:=FILTER,INFO/INFO_FILTER:=INFO/FILTER /tmp/teAXFodfS9/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annotate19.src.vcf.gz  -c INFO/FILTER:=FILTER,INFO/INFO_FILTER:=INFO/FILTER /tmp/teAXFodfS9/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annotate19.src.vcf.gz  -c INFO/FILTER:=FILTER,INFO/INFO_FILTER:=INFO/FILTER /tmp/teAXFodfS9/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate   -c INFO/FILTER:=FILTER /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate19.dst.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob   -c INFO/FILTER:=FILTER /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate19.dst.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annotate19.src.vcf.gz  -c INFO/FILTER:=FILTER /tmp/teAXFodfS9/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annotate19.src.vcf.gz  -c INFO/FILTER:=FILTER /tmp/teAXFodfS9/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annotate19.src.vcf.gz  -c INFO/FILTER:=./FILTER /tmp/teAXFodfS9/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annotate19.src.vcf.gz  -c INFO/FILTER:=./FILTER /tmp/teAXFodfS9/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annotate19.src.vcf.gz  -c INFO/FILTER:=./FILTER,FILTER /tmp/teAXFodfS9/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annotate19.src.vcf.gz  -c INFO/FILTER:=./FILTER,FILTER /tmp/teAXFodfS9/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annotate19.src.vcf.gz  -c FILTER,INFO/FILTER:=./FILTER /tmp/teAXFodfS9/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annotate19.src.vcf.gz  -c FILTER,INFO/FILTER:=./FILTER /tmp/teAXFodfS9/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annotate20.src.vcf.gz  -c  FMT/GT /tmp/teAXFodfS9/annotate20.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annotate20.src.vcf.gz  -c  FMT/GT /tmp/teAXFodfS9/annotate20.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annotate20.src.vcf.gz  -c +FMT/GT /tmp/teAXFodfS9/annotate20.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annotate20.src.vcf.gz  -c +FMT/GT /tmp/teAXFodfS9/annotate20.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annotate20.src.vcf.gz  -c -FMT/GT /tmp/teAXFodfS9/annotate20.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annotate20.src.vcf.gz  -c -FMT/GT /tmp/teAXFodfS9/annotate20.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annotate.multi.tab.gz  -c CHROM,POS,REF,ALT,ANN -l ANN:append /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.multi.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annotate.multi.tab.gz  -c CHROM,POS,REF,ALT,ANN -l ANN:append /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.multi.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annotate.missing-append.tab.gz  -c CHROM,POS,REF,ALT,STR,INT,FLT -l STR:append-missing,INT:append-missing,FLT:append-missing /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.missing-append.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annotate.missing-append.tab.gz  -c CHROM,POS,REF,ALT,STR,INT,FLT -l STR:append-missing,INT:append-missing,FLT:append-missing /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.missing-append.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annots9.tab.gz  -c CHROM,POS,REF,ALT,+ID /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate9.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annots9.tab.gz  -c CHROM,POS,REF,ALT,+ID /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate9.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate   --rename-annots /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate21.txt /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate21.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob   --rename-annots /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate21.txt /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate21.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate   -c XX:=FORMAT/X-X,YY:=FORMAT/Y-Y,AA:=FORMAT/A-A,AA:=INFO/A-A,BB:=INFO/B-B,XX:=INFO/X-X,YY:=INFO/Y-Y,fltA:=FILTER/flt-A,fltB:=FILTER/flt-B,fltX:=FILTER/flt-X,fltY:=FILTER/flt-Y /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate21.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob   -c XX:=FORMAT/X-X,YY:=FORMAT/Y-Y,AA:=FORMAT/A-A,AA:=INFO/A-A,BB:=INFO/B-B,XX:=INFO/X-X,YY:=INFO/Y-Y,fltA:=FILTER/flt-A,fltB:=FILTER/flt-B,fltX:=FILTER/flt-X,fltY:=FILTER/flt-Y /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate21.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annotate22.vcf.gz  -c FMT/XX,INFO/XX -x FMT/XX,INFO/XX /tmp/teAXFodfS9/annotate22.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annotate22.vcf.gz  -c FMT/XX,INFO/XX -x FMT/XX,INFO/XX /tmp/teAXFodfS9/annotate22.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annotate23.tab.gz  -c CHROM,POS,~ID,REF,ALT,INFO/END /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate23.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annotate23.tab.gz  -c CHROM,POS,~ID,REF,ALT,INFO/END /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate23.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annotate24.src.vcf.gz  -c XX /tmp/teAXFodfS9/annotate24.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annotate24.src.vcf.gz  -c XX /tmp/teAXFodfS9/annotate24.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annotate25.tab.gz  -c CHROM,POS,ID,REF,ALT,~INFO/END /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate25.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annotate25.tab.gz  -c CHROM,POS,ID,REF,ALT,~INFO/END /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate25.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annotate26.tab.gz  -c CHROM,POS,-POS /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate26.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annotate26.tab.gz  -c CHROM,POS,-POS /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate26.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,TSTR,TFLT,TINT /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,TSTR,TFLT,TINT /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,.TSTR,.TFLT,.TINT /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,.TSTR,.TFLT,.TINT /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,.+TSTR,.+TFLT,.+TINT /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,.+TSTR,.+TFLT,.+TINT /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,+TSTR,+TFLT,+TINT /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,+TSTR,+TFLT,+TINT /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,.=TSTR,.=TFLT,.=TINT /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,.=TSTR,.=TFLT,.=TINT /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,=TSTR,=TFLT,=TINT /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,=TSTR,=TFLT,=TINT /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annots.olap.tab.gz  -c CHROM,BEG,END,DB -l DB:unique /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.olap.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annots.olap.tab.gz  -c CHROM,BEG,END,DB -l DB:unique /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.olap.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annots.olap.tab.gz  -c CHROM,BEG,END,DB -l DB:unique --min-overlap 0.4:0.5 -m XXX /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.olap.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annots.olap.tab.gz  -c CHROM,BEG,END,DB -l DB:unique --min-overlap 0.4:0.5 -m XXX /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.olap.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annots.id.vcf.gz  -c ALT /tmp/teAXFodfS9/annotate.id.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annots.id.vcf.gz  -c ALT /tmp/teAXFodfS9/annotate.id.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annots.id.vcf.gz  -c +ALT /tmp/teAXFodfS9/annotate.id.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annots.id.vcf.gz  -c +ALT /tmp/teAXFodfS9/annotate.id.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annots.id.2.vcf.gz  --pair-logic some -c +ID /tmp/teAXFodfS9/annotate.id.2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annots.id.2.vcf.gz  --pair-logic some -c +ID /tmp/teAXFodfS9/annotate.id.2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annots.id.2.vcf.gz  --pair-logic any -c +ID /tmp/teAXFodfS9/annotate.id.2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annots.id.2.vcf.gz  --pair-logic any -c +ID /tmp/teAXFodfS9/annotate.id.2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annotate27.tab.gz  -c CHROM,POS,REF,ALT,EVIDENCE /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate27.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annotate27.tab.gz  -c CHROM,POS,REF,ALT,EVIDENCE /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate27.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annots28.tab.gz  -c CHROM,POS,REF,ALT,FMT/TEST -s smpl1,smpl2 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate28.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annots28.tab.gz  -c CHROM,POS,REF,ALT,FMT/TEST -s smpl1,smpl2 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate28.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annots28.tab.gz  -c CHROM,POS,REF,ALT,FMT/TEST -s smpl2,smpl1 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate28.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annots28.tab.gz  -c CHROM,POS,REF,ALT,FMT/TEST -s smpl2,smpl1 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate28.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annots28.tab.gz  -c CHROM,POS,REF,ALT,FMT/TEST -s smpl1 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate28.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annots28.tab.gz  -c CHROM,POS,REF,ALT,FMT/TEST -s smpl1 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate28.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annots28.tab.gz  -c CHROM,POS,REF,ALT,FMT/TEST -s smpl2 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate28.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annots28.tab.gz  -c CHROM,POS,REF,ALT,FMT/TEST -s smpl2 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate28.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate   -m XXX /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob   -m XXX /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annots34.tab.gz  -c CHROM,FROM,TO,INFO/END -H '##INFO=<ID=END,Number=1,Type=Integer,Description="End coordinate in reference for SV">' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate34.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annots34.tab.gz  -c CHROM,FROM,TO,INFO/END -H '##INFO=<ID=END,Number=1,Type=Integer,Description="End coordinate in reference for SV">' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate34.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/teAXFodfS9/annots-mark.bed.gz  -c CHROM,FROM,TO -m TAG /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annots-mark.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/teAXFodfS9/annots-mark.bed.gz  -c CHROM,FROM,TO -m TAG /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annots-mark.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +check-ploidy --no-version /tmp/teAXFodfS9/checkploidy.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +check-ploidy --no-version /tmp/teAXFodfS9/checkploidy.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +check-ploidy --no-version /tmp/teAXFodfS9/checkploidy.2.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +check-ploidy --no-version /tmp/teAXFodfS9/checkploidy.2.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +check-ploidy --no-version /tmp/teAXFodfS9/checkploidy.2.vcf.gz -- -m | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +check-ploidy --no-version /tmp/teAXFodfS9/checkploidy.2.bcf -- -m | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +missing2ref --no-version /tmp/teAXFodfS9/plugin1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +missing2ref --no-version /tmp/teAXFodfS9/plugin1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/teAXFodfS9/plugin1.vcf.gz -- -t . -n 0 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/teAXFodfS9/plugin1.bcf -- -t . -n 0 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/teAXFodfS9/setGT.vcf.gz -- -t q -n 0 -i 'GT~"." && FMT/DP=30 && GQ=150' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/teAXFodfS9/setGT.bcf -- -t q -n 0 -i 'GT~"." && FMT/DP=30 && GQ=150' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/teAXFodfS9/setGT.2.vcf.gz -- -t q -n . -i 'GT[@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/setGT.samples.txt]="het"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/teAXFodfS9/setGT.2.bcf -- -t q -n . -i 'GT[@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/setGT.samples.txt]="het"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/teAXFodfS9/setGT.2.vcf.gz -- -t q -n . -i 'GT[@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/setGT.samples.txt]="het" & binom(AD[@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/setGT.samples.txt])<0.1' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/teAXFodfS9/setGT.2.bcf -- -t q -n . -i 'GT[@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/setGT.samples.txt]="het" & binom(AD[@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/setGT.samples.txt])<0.1' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/teAXFodfS9/setGT.2.vcf.gz -- -t a -n i | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/teAXFodfS9/setGT.2.bcf -- -t a -n i | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/teAXFodfS9/setGT.3.vcf.gz -- -t a -n pM | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/teAXFodfS9/setGT.3.bcf -- -t a -n pM | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/teAXFodfS9/setGT.3.vcf.gz -- -t a -n pm | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/teAXFodfS9/setGT.3.bcf -- -t a -n pm | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/teAXFodfS9/setGT.3.vcf.gz -- -t a -n c:1 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/teAXFodfS9/setGT.3.bcf -- -t a -n c:1 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/teAXFodfS9/setGT.3.vcf.gz -- -t a -n c:"1|1" | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/teAXFodfS9/setGT.3.bcf -- -t a -n c:"1|1" | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/teAXFodfS9/setGT.3.vcf.gz -- -t a -n c:"m|M" | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/teAXFodfS9/setGT.3.bcf -- -t a -n c:"m|M" | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/teAXFodfS9/setGT.3.vcf.gz -- -t a -n c:0/1/1 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/teAXFodfS9/setGT.3.bcf -- -t a -n c:0/1/1 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/teAXFodfS9/setGT.3.vcf.gz -i 'GT="mis"' -- -t . -nc:././. | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/teAXFodfS9/setGT.3.bcf -i 'GT="mis"' -- -t . -nc:././. | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/teAXFodfS9/setGT.4.vcf.gz -- -t q -n . -e 'FMT/DP>90' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/teAXFodfS9/setGT.4.bcf -- -t q -n . -e 'FMT/DP>90' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/teAXFodfS9/setGT.4.vcf.gz -- -t q -n . -e 'FMT/DP>100' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/teAXFodfS9/setGT.4.bcf -- -t q -n . -e 'FMT/DP>100' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/teAXFodfS9/setGT.5.vcf.gz -- -t a -n X | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] AD should be declared as Number=R
[W::bcf_hdr_check_sanity] AD should be declared as Number=R
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/teAXFodfS9/setGT.5.bcf -- -t a -n X | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/teAXFodfS9/setGT.5.vcf.gz -- -t a -n c:0/X/X | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] AD should be declared as Number=R
[W::bcf_hdr_check_sanity] AD should be declared as Number=R
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/teAXFodfS9/setGT.5.bcf -- -t a -n c:0/X/X | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/teAXFodfS9/setGT.6.vcf.gz -- -t ./x -n . | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/teAXFodfS9/setGT.6.bcf -- -t ./x -n . | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/teAXFodfS9/setGT.6.vcf.gz -- -t . -n . | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/teAXFodfS9/setGT.6.bcf -- -t . -n . | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/teAXFodfS9/setGT.6.vcf.gz -- -t r:0.5 -n . | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/teAXFodfS9/setGT.6.bcf -- -t r:0.5 -n . | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-AN-AC --no-version /tmp/teAXFodfS9/plugin1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-AN-AC --no-version /tmp/teAXFodfS9/plugin1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +dosage /tmp/teAXFodfS9/dosage.vcf.gz -- -t PL | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +dosage /tmp/teAXFodfS9/dosage.bcf -- -t PL | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +dosage /tmp/teAXFodfS9/dosage.vcf.gz -- -t GL | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +dosage /tmp/teAXFodfS9/dosage.bcf -- -t GL | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +dosage /tmp/teAXFodfS9/dosage.vcf.gz -- -t GT | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +dosage /tmp/teAXFodfS9/dosage.bcf -- -t GT | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fixploidy --no-version /tmp/teAXFodfS9/fixploidy.vcf.gz -- -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fixploidy.samples -p /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fixploidy.ploidy | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fixploidy --no-version /tmp/teAXFodfS9/fixploidy.bcf -- -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fixploidy.samples -p /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fixploidy.ploidy | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +guess-ploidy /tmp/teAXFodfS9/view.PL.vcf.gz -v -rX | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +guess-ploidy /tmp/teAXFodfS9/view.PL.bcf -v -rX | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +guess-ploidy /tmp/teAXFodfS9/view.GL.vcf.gz -v -rX | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +guess-ploidy /tmp/teAXFodfS9/view.GL.bcf -v -rX | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +tag2tag --no-version /tmp/teAXFodfS9/view.GL.vcf.gz -- -r --gl-to-pl | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +tag2tag --no-version /tmp/teAXFodfS9/view.GL.bcf -- -r --gl-to-pl | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +tag2tag --no-version /tmp/teAXFodfS9/view.GL.vcf.gz -- --gl-to-gp | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +tag2tag --no-version /tmp/teAXFodfS9/view.GL.bcf -- --gl-to-gp | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +tag2tag --no-version /tmp/teAXFodfS9/view.GP.vcf.gz -- -r --gp-to-gt -t 0.2 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +tag2tag --no-version /tmp/teAXFodfS9/view.GP.bcf -- -r --gp-to-gt -t 0.2 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +tag2tag --no-version /tmp/teAXFodfS9/tag2tag.LPL.1.vcf.gz -- --LXX-to-XX | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +tag2tag --no-version /tmp/teAXFodfS9/tag2tag.LPL.1.bcf -- --LXX-to-XX | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +tag2tag --no-version /tmp/teAXFodfS9/tag2tag.LPL.1.vcf.gz -- --LXX-to-XX -r | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +tag2tag --no-version /tmp/teAXFodfS9/tag2tag.LPL.1.bcf -- --LXX-to-XX -r | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +tag2tag --no-version /tmp/teAXFodfS9/tag2tag.LPL.1.vcf.gz -- --LXX-to-XX -r -d AD:0,PL:255 -s 3 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +tag2tag --no-version /tmp/teAXFodfS9/tag2tag.LPL.1.bcf -- --LXX-to-XX -r -d AD:0,PL:255 -s 3 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +add-variantkey /tmp/teAXFodfS9/query.variantkey.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +add-variantkey /tmp/teAXFodfS9/query.variantkey.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +variantkey-hex /tmp/teAXFodfS9/query.variantkey.vcf.gz test/ | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +variantkey-hex /tmp/teAXFodfS9/query.variantkey.bcf test/ | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +allele-length /tmp/teAXFodfS9/query.nucleotide.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +allele-length /tmp/teAXFodfS9/query.nucleotide.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/fill-tags.MAC-MAF.vcf.gz -- -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fill-tags.3.smpl -t 'MAC:1=MAC' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/fill-tags.MAC-MAF.bcf -- -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fill-tags.3.smpl -t 'MAC:1=MAC' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/fill-tags.MAC-MAF.vcf.gz -- -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fill-tags.3.smpl -t 'MAC:1=int(MAF*AN)' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/fill-tags.MAC-MAF.bcf -- -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fill-tags.3.smpl -t 'MAC:1=int(MAF*AN)' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/query.func.1.vcf.gz -- -t 'FMT/AB:1=float(FMT/AD[*:0] / ssum(FMT/AD[*]))' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/query.func.1.bcf -- -t 'FMT/AB:1=float(FMT/AD[*:0] / ssum(FMT/AD[*]))' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/fmissing.vcf.gz -- -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fmissing.txt -t 'F_MISSING' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/fmissing.bcf -- -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fmissing.txt -t 'F_MISSING' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/fmissing.vcf.gz -- -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fmissing.txt -t 'F_MISSING:1=F_PASS(GT="mis")' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/fmissing.bcf -- -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fmissing.txt -t 'F_MISSING:1=F_PASS(GT="mis")' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/fmissing.vcf.gz -- -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fmissing.txt -t 'N_MISSING:1=int(N_PASS(GT="mis"))' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/fmissing.bcf -- -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fmissing.txt -t 'N_MISSING:1=int(N_PASS(GT="mis"))' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/fisher.vcf.gz -- -t 'FT:1=phred(fisher(INFO/DP4))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/fisher.bcf -- -t 'FT:1=phred(fisher(INFO/DP4))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/fisher.vcf.gz -- -t 'FT:1=phred(fisher(INFO/ADF[0,2],INFO/ADR[0,2]))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/fisher.bcf -- -t 'FT:1=phred(fisher(INFO/ADF[0,2],INFO/ADR[0,2]))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/fisher.vcf.gz -- -t 'FT:1=phred(fisher(INFO/ADF,INFO/ADR))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/fisher.bcf -- -t 'FT:1=phred(fisher(INFO/ADF,INFO/ADR))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/fisher.vcf.gz -- -t 'FMT/FT:1=phred(fisher(FMT/DP4))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/fisher.bcf -- -t 'FMT/FT:1=phred(fisher(FMT/DP4))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/fisher.vcf.gz -- -t 'FMT/FT:1=phred(fisher(FORMAT/ADF,FORMAT/ADR))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/fisher.bcf -- -t 'FMT/FT:1=phred(fisher(FORMAT/ADF,FORMAT/ADR))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/fisher.vcf.gz -- -t 'FMT/FT:1=phred(fisher(FORMAT/ADF[:0,1],FORMAT/ADR[:0,1]))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/fisher.bcf -- -t 'FMT/FT:1=phred(fisher(FORMAT/ADF[:0,1],FORMAT/ADR[:0,1]))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/merge.a.vcf.gz -- -t AN,AC,AC_Hom,AC_Het,AC_Hemi | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/merge.a.bcf -- -t AN,AC,AC_Hom,AC_Het,AC_Hemi | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/view.vcf.gz -- -t AC,AN,AF,MAF,NS | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/view.bcf -- -t AC,AN,AF,MAF,NS | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/view.vcf.gz -- -t AC -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fill-tags.3.smpl | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/view.bcf -- -t AC -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fill-tags.3.smpl | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/view.vcf.gz -- -t "DP:1=int(sum(FORMAT/DP))" -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fill-tags.3.smpl | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/view.bcf -- -t "DP:1=int(sum(FORMAT/DP))" -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fill-tags.3.smpl | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/many-alts.vcf.gz -- -t AN,AC | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/many-alts.bcf -- -t AN,AC | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/fill-tags-hemi.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/fill-tags-hemi.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/fill-tags-hemi.vcf.gz -- -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/fill-tags-hemi.bcf -- -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/fill-tags-hwe.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/fill-tags-hwe.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/fill-tags-hwe.vcf.gz -- -t 'XX:1=F_PASS(GT="alt")' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/fill-tags-hwe.bcf -- -t 'XX:1=F_PASS(GT="alt")' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/fill-tags-rw.vcf.gz -- -t all,END,TYPE,F_MISSING | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/fill-tags-rw.bcf -- -t all,END,TYPE,F_MISSING | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/fill-tags-AN0.vcf.gz -- -t all,END,TYPE,F_MISSING | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/fill-tags-AN0.bcf -- -t all,END,TYPE,F_MISSING | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/fill-tags-VAF.vcf.gz -- -t VAF,VAF1 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/fill-tags-VAF.bcf -- -t VAF,VAF1 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/fill-tags-AD.vcf.gz -- -t 'INFO/DP:1=int(sum(FMT/AD))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/fill-tags-AD.bcf -- -t 'INFO/DP:1=int(sum(FMT/AD))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/fill-tags-AD.vcf.gz -- -t 'INFO/DP:1=int(sum(INFO/AD))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/fill-tags-AD.bcf -- -t 'INFO/DP:1=int(sum(INFO/AD))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/fill-tags-AD.vcf.gz -- -t 'FORMAT/DP:1=int(smpl_sum(FMT/AD))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/fill-tags-AD.bcf -- -t 'FORMAT/DP:1=int(smpl_sum(FMT/AD))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/fill-tags-AD.vcf.gz -- -t 'XX=N_PASS(FMT/AD[:0]<=10)','YY=N_PASS(FMT/AD[:0]>10)' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/fill-tags-AD.bcf -- -t 'XX=N_PASS(FMT/AD[:0]<=10)','YY=N_PASS(FMT/AD[:0]>10)' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/fill-tags-AD.vcf.gz -- -t 'good=N_PASS(binom(FMT/AD[:0],FMT/AD[:1])>=1e-5)','bad=N_PASS(binom(FMT/AD[:0],FMT/AD[:1])<1e-5)' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/teAXFodfS9/fill-tags-AD.bcf -- -t 'good=N_PASS(binom(FMT/AD[:0],FMT/AD[:1])>=1e-5)','bad=N_PASS(binom(FMT/AD[:0],FMT/AD[:1])<1e-5)' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTisec /tmp/teAXFodfS9/view.vcf.gz  | grep -v bcftools | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTisec /tmp/teAXFodfS9/view.bcf  | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTisec /tmp/teAXFodfS9/view.vcf.gz -- -H | grep -v bcftools | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTisec /tmp/teAXFodfS9/view.bcf -- -H | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTisec /tmp/teAXFodfS9/view.vcf.gz -- -Hm | grep -v bcftools | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTisec /tmp/teAXFodfS9/view.bcf -- -Hm | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTisec /tmp/teAXFodfS9/view.vcf.gz -- -Hmv | grep -v bcftools | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTisec /tmp/teAXFodfS9/view.bcf -- -Hmv | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTisec /tmp/teAXFodfS9/view.vcf.gz -- -Hv | grep -v bcftools | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTisec /tmp/teAXFodfS9/view.bcf -- -Hv | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTisec /tmp/teAXFodfS9/view.vcf.gz -- -m | grep -v bcftools | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTisec /tmp/teAXFodfS9/view.bcf -- -m | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTisec /tmp/teAXFodfS9/view.vcf.gz -- -mv | grep -v bcftools | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTisec /tmp/teAXFodfS9/view.bcf -- -mv | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTisec /tmp/teAXFodfS9/view.vcf.gz -- -v | grep -v bcftools | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTisec /tmp/teAXFodfS9/view.bcf -- -v | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-switch-rate /tmp/teAXFodfS9/trio.vcf.gz -- -p /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/trio.ped | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-switch-rate /tmp/teAXFodfS9/trio.bcf -- -p /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/trio.ped | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-stats /tmp/teAXFodfS9/trio-stats.vcf.gz -a 1 -p /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/trio-stats.ped -d mendel-errors,transmitted | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-stats /tmp/teAXFodfS9/trio-stats.bcf -a 1 -p /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/trio-stats.ped -d mendel-errors,transmitted | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-stats /tmp/teAXFodfS9/trio-stats.vcf.gz -p /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/trio-stats.ped -d mendel-errors,transmitted | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-stats /tmp/teAXFodfS9/trio-stats.bcf -p /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/trio-stats.ped -d mendel-errors,transmitted | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +smpl-stats /tmp/teAXFodfS9/indel-stats.vcf.gz | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +smpl-stats /tmp/teAXFodfS9/indel-stats.bcf | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +indel-stats /tmp/teAXFodfS9/indel-stats.vcf.gz | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +indel-stats /tmp/teAXFodfS9/indel-stats.bcf | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +indel-stats /tmp/teAXFodfS9/indel-stats.vcf.gz  -p /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/trio-stats.ped | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +indel-stats /tmp/teAXFodfS9/indel-stats.bcf  -p /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/trio-stats.ped | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +indel-stats /tmp/teAXFodfS9/indel-stats.vcf.gz  -p /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/trio-stats.2.ped | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +indel-stats /tmp/teAXFodfS9/indel-stats.bcf  -p /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/trio-stats.2.ped | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +ad-bias /tmp/teAXFodfS9/ad-bias.vcf.gz -- -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/ad-bias.samples | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +ad-bias /tmp/teAXFodfS9/ad-bias.bcf -- -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/ad-bias.samples | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +ad-bias /tmp/teAXFodfS9/ad-bias.2.vcf.gz -- -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/ad-bias.samples | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +ad-bias /tmp/teAXFodfS9/ad-bias.2.bcf -- -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/ad-bias.samples | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +ad-bias /tmp/teAXFodfS9/ad-bias.vcf.gz --no-version -- -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/ad-bias.samples -c | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +ad-bias /tmp/teAXFodfS9/ad-bias.bcf --no-version -- -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/ad-bias.samples -c | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +ad-bias /tmp/teAXFodfS9/ad-bias.2.vcf.gz --no-version -- -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/ad-bias.samples -c | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +ad-bias /tmp/teAXFodfS9/ad-bias.2.bcf --no-version -- -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/ad-bias.samples -c | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +af-dist /tmp/teAXFodfS9/af-dist.vcf.gz  | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +af-dist /tmp/teAXFodfS9/af-dist.bcf  | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fixref /tmp/teAXFodfS9/fixref.2a.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa -i /tmp/teAXFodfS9/fixref.2b.vcf.gz | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fixref /tmp/teAXFodfS9/fixref.2a.bcf -- -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa -i /tmp/teAXFodfS9/fixref.2b.vcf.gz | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fixref /tmp/teAXFodfS9/fixref.3.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fixref.3.fa -m top | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fixref /tmp/teAXFodfS9/fixref.3.bcf -- -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fixref.3.fa -m top | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fixref /tmp/teAXFodfS9/fixref.2a.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa -m ref-alt | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fixref /tmp/teAXFodfS9/fixref.2a.bcf -- -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa -m ref-alt | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fixref /tmp/teAXFodfS9/fixref.2a.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa -m flip | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fixref /tmp/teAXFodfS9/fixref.2a.bcf -- -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa -m flip | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fixref /tmp/teAXFodfS9/fixref.2a.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa -m flip-all | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fixref /tmp/teAXFodfS9/fixref.2a.bcf -- -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa -m flip-all | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fixref /tmp/teAXFodfS9/fixref.2a.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa -m swap | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fixref /tmp/teAXFodfS9/fixref.2a.bcf -- -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa -m swap | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-from-fasta /tmp/teAXFodfS9/aa.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/aa.fa -c AA -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/aa.hdr -i 'TYPE="snp"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-from-fasta /tmp/teAXFodfS9/aa.bcf -- -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/aa.fa -c AA -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/aa.hdr -i 'TYPE="snp"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-from-fasta /tmp/teAXFodfS9/aa.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/aa.fa -c REF -N | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-from-fasta /tmp/teAXFodfS9/aa.bcf -- -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/aa.fa -c REF -N | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-from-fasta /tmp/teAXFodfS9/ref.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa -c REF | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-from-fasta /tmp/teAXFodfS9/ref.bcf -- -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa -c REF | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTsubset --no-version /tmp/teAXFodfS9/view.vcf.gz -- -s NA00001 | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTsubset --no-version /tmp/teAXFodfS9/view.bcf -- -s NA00001 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTsubset --no-version /tmp/teAXFodfS9/view.vcf.gz -- -s NA00001,NA00002 | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTsubset --no-version /tmp/teAXFodfS9/view.bcf -- -s NA00001,NA00002 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTsubset --no-version /tmp/teAXFodfS9/view.vcf.gz -- -s NA00001,NA00002,NA00003 | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTsubset --no-version /tmp/teAXFodfS9/view.bcf -- -s NA00001,NA00002,NA00003 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +mendelian2 /tmp/teAXFodfS9/mendelian.vcf.gz -p 2X:child1,dad1,mom1 -md | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +mendelian2 /tmp/teAXFodfS9/mendelian.bcf -p 2X:child1,dad1,mom1 -md | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +mendelian2 /tmp/teAXFodfS9/mendelian.vcf.gz -P /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mendelian.ped -md | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +mendelian2 /tmp/teAXFodfS9/mendelian.bcf -P /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mendelian.ped -md | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +mendelian2 /tmp/teAXFodfS9/mendelian.vcf.gz -p 1X:child1,dad1,mom1 -mg | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +mendelian2 /tmp/teAXFodfS9/mendelian.bcf -p 1X:child1,dad1,mom1 -mg | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +mendelian2 /tmp/teAXFodfS9/mendelian.vcf.gz -p 1X:child1,dad1,mom1 -me | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +mendelian2 /tmp/teAXFodfS9/mendelian.bcf -p 1X:child1,dad1,mom1 -me | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +mendelian2 /tmp/teAXFodfS9/mendelian.vcf.gz -p 1X:child1,dad1,mom1 -ma | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +mendelian2 /tmp/teAXFodfS9/mendelian.bcf -p 1X:child1,dad1,mom1 -ma | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +mendelian2 /tmp/teAXFodfS9/mendelian.vcf.gz -p 1X:child1,dad1,mom1 -mm | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +mendelian2 /tmp/teAXFodfS9/mendelian.bcf -p 1X:child1,dad1,mom1 -mm | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +mendelian2 /tmp/teAXFodfS9/mendelian.vcf.gz -p 1X:child1,dad1,mom1 | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +mendelian2 /tmp/teAXFodfS9/mendelian.bcf -p 1X:child1,dad1,mom1 | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +mendelian2 /tmp/teAXFodfS9/mendelian.vcf.gz -p 2X:child1,dad1,mom1 | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +mendelian2 /tmp/teAXFodfS9/mendelian.bcf -p 2X:child1,dad1,mom1 | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +contrast /tmp/teAXFodfS9/contrast.vcf.gz -a PASSOC,FASSOC,NOVELAL,NOVELGT -0 a,b -1 c | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +contrast /tmp/teAXFodfS9/contrast.bcf -a PASSOC,FASSOC,NOVELAL,NOVELGT -0 a,b -1 c | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +contrast /tmp/teAXFodfS9/contrast.vcf.gz -a PASSOC,FASSOC,NOVELAL,NOVELGT -0 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/contrast0.txt -1 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/contrast1.txt | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +contrast /tmp/teAXFodfS9/contrast.bcf -a PASSOC,FASSOC,NOVELAL,NOVELGT -0 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/contrast0.txt -1 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/contrast1.txt | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +contrast /tmp/teAXFodfS9/contrast.vcf.gz -a NASSOC -0 a,b,c -1 d --force-samples | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +contrast /tmp/teAXFodfS9/contrast.bcf -a NASSOC -0 a,b,c -1 d --force-samples | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +contrast /tmp/teAXFodfS9/contrast.1.vcf.gz -a NOVELAL,NOVELGT -0 A -1 B | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +contrast /tmp/teAXFodfS9/contrast.1.bcf -a NOVELAL,NOVELGT -0 A -1 B | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +contrast /tmp/teAXFodfS9/contrast.1.vcf.gz -a NOVELGT -0 A -1 B | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +contrast /tmp/teAXFodfS9/contrast.1.bcf -a NOVELGT -0 A -1 B | grep -v ^##bcftools_
.. ok

test_trio_dnm3:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/trio-dnm3/test.sh /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/teAXFodfS9/trio-dnm/trio-dnm.1.vcf.gz -p proband,father,mother --use-ALM --ppl --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/teAXFodfS9/trio-dnm/trio-dnm.1.bcf -p proband,father,mother --use-ALM --ppl --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/teAXFodfS9/trio-dnm/trio-dnm.2.vcf.gz -p proband,father,mother --use-ALM --ppl --dnm-tag DNM:log --force-AD | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/teAXFodfS9/trio-dnm/trio-dnm.2.bcf -p proband,father,mother --use-ALM --ppl --dnm-tag DNM:log --force-AD | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/teAXFodfS9/trio-dnm/trio-dnm.4.vcf.gz -p proband,father,mother --use-DNG | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/teAXFodfS9/trio-dnm/trio-dnm.4.bcf -p proband,father,mother --use-DNG | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/teAXFodfS9/trio-dnm/trio-dnm.4.vcf.gz -p proband,father,mother --use-ALM | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/teAXFodfS9/trio-dnm/trio-dnm.4.bcf -p proband,father,mother --use-ALM | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/teAXFodfS9/trio-dnm/trio-dnm.4.vcf.gz -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/teAXFodfS9/trio-dnm/trio-dnm.4.bcf -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/teAXFodfS9/trio-dnm/trio-dnm.4.vcf.gz -p proband,father,mother --use-ALM --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/teAXFodfS9/trio-dnm/trio-dnm.4.bcf -p proband,father,mother --use-ALM --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/teAXFodfS9/trio-dnm/trio-dnm.5.vcf.gz -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/teAXFodfS9/trio-dnm/trio-dnm.5.bcf -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/teAXFodfS9/trio-dnm/trio-dnm.5.vcf.gz -p proband,father,mother --use-ALM --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/teAXFodfS9/trio-dnm/trio-dnm.5.bcf -p proband,father,mother --use-ALM --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/teAXFodfS9/trio-dnm/trio-dnm.6.vcf.gz -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/teAXFodfS9/trio-dnm/trio-dnm.6.bcf -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/teAXFodfS9/trio-dnm/trio-dnm.6.vcf.gz -p proband,father,mother --use-ALM --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\t[\t%VA]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/teAXFodfS9/trio-dnm/trio-dnm.6.bcf -p proband,father,mother --use-ALM --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\t[\t%VA]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/teAXFodfS9/trio-dnm/trio-dnm.7.vcf.gz -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/teAXFodfS9/trio-dnm/trio-dnm.7.bcf -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/teAXFodfS9/trio-dnm/trio-dnm.7.vcf.gz -p proband,father,mother --use-ALM --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/teAXFodfS9/trio-dnm/trio-dnm.7.bcf -p proband,father,mother --use-ALM --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/teAXFodfS9/trio-dnm/trio-dnm.8.vcf.gz -p proband,father,mother --use-ALM | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/teAXFodfS9/trio-dnm/trio-dnm.8.bcf -p proband,father,mother --use-ALM | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/teAXFodfS9/trio-dnm/trio-dnm.9.vcf.gz -p 1X:proband,father,mother --use-NAIVE | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/teAXFodfS9/trio-dnm/trio-dnm.9.bcf -p 1X:proband,father,mother --use-NAIVE | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/teAXFodfS9/trio-dnm/trio-dnm.9.vcf.gz -p 2X:proband,father,mother --use-NAIVE | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/teAXFodfS9/trio-dnm/trio-dnm.9.bcf -p 2X:proband,father,mother --use-NAIVE | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/teAXFodfS9/trio-dnm/trio-dnm.10.vcf.gz -p proband,father,mother --use-ALM --with-pAD | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM][\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/teAXFodfS9/trio-dnm/trio-dnm.10.bcf -p proband,father,mother --use-ALM --with-pAD | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM][\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/teAXFodfS9/trio-dnm/trio-dnm.11.vcf.gz -p 1X:proband,father,mother --use-ALM | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM:%POS  DNM=[%DNM ]\tAD=[%AD ]\tQS=[%QS ]\tVAF=[%VAF ]\tVA=[%VA ]' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/teAXFodfS9/trio-dnm/trio-dnm.11.bcf -p 1X:proband,father,mother --use-ALM | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM:%POS  DNM=[%DNM ]\tAD=[%AD ]\tQS=[%QS ]\tVAF=[%VAF ]\tVA=[%VA ]' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/teAXFodfS9/trio-dnm/trio-dnm.11.vcf.gz -p 1X:proband,father,mother --use-ALM --strictly-novel | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM:%POS  DNM=[%DNM ]\tAD=[%AD ]\tQS=[%QS ]\tVAF=[%VAF ]\tVA=[%VA ]' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/teAXFodfS9/trio-dnm/trio-dnm.11.bcf -p 1X:proband,father,mother --use-ALM --strictly-novel | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM:%POS  DNM=[%DNM ]\tAD=[%AD ]\tQS=[%QS ]\tVAF=[%VAF ]\tVA=[%VA ]' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/teAXFodfS9/trio-dnm/trio-dnm.12.vcf.gz -p child,dad,mom --with-cAD --max-QM -30 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM:%POS  DNM=[%DNM ]\tAD=[%AD ]\tVAF=[%VAF ]' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/teAXFodfS9/trio-dnm/trio-dnm.12.bcf -p child,dad,mom --with-cAD --max-QM -30 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM:%POS  DNM=[%DNM ]\tAD=[%AD ]\tVAF=[%VAF ]' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/teAXFodfS9/trio-dnm/trio-dnm.12.vcf.gz -p child,dad,mom --with-cAD --max-QM -30 --use-DMM | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM:%POS  DNM=[%DNM ]\tAD=[%AD ]\tVAF=[%VAF ]' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/teAXFodfS9/trio-dnm/trio-dnm.12.bcf -p child,dad,mom --with-cAD --max-QM -30 --use-DMM | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM:%POS  DNM=[%DNM ]\tAD=[%AD ]\tVAF=[%VAF ]' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +gvcfz /tmp/teAXFodfS9/gvcfz.vcf.gz -g 'PASS:GT!="alt"' -a | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%END[\t%GT][\t%DP][\t%GQ][\t%RGQ]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +gvcfz /tmp/teAXFodfS9/gvcfz.bcf -g 'PASS:GT!="alt"' -a | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%END[\t%GT][\t%DP][\t%GQ][\t%RGQ]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +gvcfz /tmp/teAXFodfS9/gvcfz.vcf.gz -g 'PASS:GQ>10; FLT:-' -a | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%FILTER\t%END[\t%GT][\t%DP][\t%GQ][\t%RGQ]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +gvcfz /tmp/teAXFodfS9/gvcfz.bcf -g 'PASS:GQ>10; FLT:-' -a | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%FILTER\t%END[\t%GT][\t%DP][\t%GQ][\t%RGQ]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +gvcfz /tmp/teAXFodfS9/gvcfz.2.vcf.gz -g 'PASS:GT!="alt"' -a | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%FILTER\t%END[\t%GT][\t%DP]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +gvcfz /tmp/teAXFodfS9/gvcfz.2.bcf -g 'PASS:GT!="alt"' -a | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%FILTER\t%END[\t%GT][\t%DP]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/teAXFodfS9/remove-overlaps.1.vcf.gz -m overlap | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/teAXFodfS9/remove-overlaps.1.bcf -m overlap | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/teAXFodfS9/remove-overlaps.1.vcf.gz -m overlap -M overlap | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/teAXFodfS9/remove-overlaps.1.bcf -m overlap -M overlap | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/teAXFodfS9/remove-overlaps.1.vcf.gz -m overlap -O t | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/teAXFodfS9/remove-overlaps.1.bcf -m overlap -O t | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/teAXFodfS9/remove-overlaps.1.vcf.gz -m overlap --reverse | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/teAXFodfS9/remove-overlaps.1.bcf -m overlap --reverse | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/teAXFodfS9/remove-overlaps.1.vcf.gz -m dup -M DUP | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/teAXFodfS9/remove-overlaps.1.bcf -m dup -M DUP | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/teAXFodfS9/remove-overlaps.1.vcf.gz -m dup -M unique --reverse | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/teAXFodfS9/remove-overlaps.1.bcf -m dup -M unique --reverse | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/teAXFodfS9/remove-overlaps.2.vcf.gz -m 'min(QUAL)' -M rmme | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/teAXFodfS9/remove-overlaps.2.bcf -m 'min(QUAL)' -M rmme | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/teAXFodfS9/remove-overlaps.3.vcf.gz -m 'min(QUAL)' -M rmme | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/teAXFodfS9/remove-overlaps.3.bcf -m 'min(QUAL)' -M rmme | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/teAXFodfS9/remove-overlaps.3.vcf.gz -m 'min(QUAL)' -M rmme --missing 0 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/teAXFodfS9/remove-overlaps.3.bcf -m 'min(QUAL)' -M rmme --missing 0 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/teAXFodfS9/remove-overlaps.3.vcf.gz -m 'min(QUAL)' -M rmme --missing DP | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/teAXFodfS9/remove-overlaps.3.bcf -m 'min(QUAL)' -M rmme --missing DP | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.icase.1.vcf.gz --csq-field Annotation_Impact -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split-vep.icase.1.severity -s :MODERATE+ -f '%Annotation_Impact\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.icase.1.bcf --csq-field Annotation_Impact -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split-vep.icase.1.severity -s :MODERATE+ -f '%Annotation_Impact\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.icase.1.vcf.gz --csq-field Annotation_Impact -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split-vep.icase.1.severity -s :moderate+ -f '%Annotation_Impact\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.icase.1.bcf --csq-field Annotation_Impact -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split-vep.icase.1.severity -s :moderate+ -f '%Annotation_Impact\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.12.vcf.gz -s all:any:worst -f '%CHROM\t%POS\t%Annotation\n' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.12.bcf -s all:any:worst -f '%CHROM\t%POS\t%Annotation\n' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.11.vcf.gz --csq-field Annotation -a XXX -f '%CHROM\t%POS\t%REF\t%ALT\t%XXX\n' -d -A tab | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.11.bcf --csq-field Annotation -a XXX -f '%CHROM\t%POS\t%REF\t%ALT\t%XXX\n' -d -A tab | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.11.vcf.gz --csq-field Annotation -a XXX -f '%POS %xAnnotation\n' -p x | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.11.bcf --csq-field Annotation -a XXX -f '%POS %xAnnotation\n' -p x | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.vcf.gz -c Consequence -s worst:missense+ | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.bcf -c Consequence -s worst:missense+ | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.vcf.gz -c Consequence -s worst:missense+:worst | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.bcf -c Consequence -s worst:missense+:worst | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.vcf.gz -c Consequence -s worst:missense+ | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%Consequence\n' -i'Consequence!="."' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.bcf -c Consequence -s worst:missense+ | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%Consequence\n' -i'Consequence!="."' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.vcf.gz -s worst:missense+ -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.bcf -s worst:missense+ -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.vcf.gz -c Consequence -s worst:missense+:worst | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%Consequence\n' -i'Consequence!="."' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.bcf -c Consequence -s worst:missense+:worst | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%Consequence\n' -i'Consequence!="."' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.vcf.gz -s worst:missense+:worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.bcf -s worst:missense+:worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.vcf.gz -s primary:missense+ -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.bcf -s primary:missense+ -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.vcf.gz -s CANONICAL=YES:missense+ -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.bcf -s CANONICAL=YES:missense+ -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.vcf.gz -s primary:missense+:worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.bcf -s primary:missense+:worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.vcf.gz -s CANONICAL=YES:missense+:worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.bcf -s CANONICAL=YES:missense+:worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.vcf.gz -s primary:missense+ -f'%POS\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.bcf -s primary:missense+ -f'%POS\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.vcf.gz -s CANONICAL=YES:missense+ -f'%POS\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.bcf -s CANONICAL=YES:missense+ -f'%POS\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.2.vcf.gz -s worst -f'%POS\t%AF\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.2.bcf -s worst -f'%POS\t%AF\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.2.vcf.gz -s worst -f'%POS\t%AF\n' -a BCSQ | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.2.bcf -s worst -f'%POS\t%AF\n' -a BCSQ | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.2.vcf.gz -s worst -f'%POS\t%INFO/AF\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.2.bcf -s worst -f'%POS\t%INFO/AF\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.2.vcf.gz -s worst -f'%POS\t%INFO/AF\n' -a BCSQ | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.2.bcf -s worst -f'%POS\t%INFO/AF\n' -a BCSQ | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.3.vcf.gz -s worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.3.bcf -s worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.3.vcf.gz -s worst::worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.3.bcf -s worst::worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.3.vcf.gz -s worst -f'[%POS\t%SAMPLE\t%GT\t%Consequence\n]' -i'GT="alt"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.3.bcf -s worst -f'[%POS\t%SAMPLE\t%GT\t%Consequence\n]' -i'GT="alt"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.vcf.gz -t 1:14464 -f '%POS\t%CANONICAL\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.bcf -t 1:14464 -f '%POS\t%CANONICAL\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.vcf.gz -t 1:14464 -f '%POS\t%CANONICAL\t%Consequence\n' -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.bcf -t 1:14464 -f '%POS\t%CANONICAL\t%Consequence\n' -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.vcf.gz -t 1:14464 -f '%POS\t%CSQ\n' -A tab | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.bcf -t 1:14464 -f '%POS\t%CSQ\n' -A tab | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.vcf.gz -t 1:14464 -f '%POS\t%CSQ\n' -A tab -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.bcf -t 1:14464 -f '%POS\t%CSQ\n' -A tab -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.vcf.gz -t 1:14464 -f '%POS\t%CSQ\n' -A tab -d -H | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.bcf -t 1:14464 -f '%POS\t%CSQ\n' -A tab -d -H | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.vcf.gz -t 1:14464 -f '%POS\t%CSQ\n' -A tab -d -HH | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.bcf -t 1:14464 -f '%POS\t%CSQ\n' -A tab -d -HH | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.vcf.gz -t 1:14464 -f '%POS\t%CSQ\n' -A @@@ -d -H | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.bcf -t 1:14464 -f '%POS\t%CSQ\n' -A @@@ -d -H | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.4.vcf.gz -f '%POS\t%BCSQ\n' -a BCSQ -A tab -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.4.bcf -f '%POS\t%BCSQ\n' -a BCSQ -A tab -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.4.vcf.gz -f '%POS\t%BCSQ\n'         -A tab -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.4.bcf -f '%POS\t%BCSQ\n'         -A tab -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.4.vcf.gz -f '%POS\t%BCSQ\n' -a BCSQ -A tab -d -s ::worst | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.4.bcf -f '%POS\t%BCSQ\n' -a BCSQ -A tab -d -s ::worst | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.4.vcf.gz -f '%POS\t%BCSQ\n'         -A tab -d -s ::worst | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.4.bcf -f '%POS\t%BCSQ\n'         -A tab -d -s ::worst | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.vcf.gz -c gnomAD_NFE_AF:real,ALLELE_NUM:int | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%gnomAD_NFE_AF\t%ALLELE_NUM\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.bcf -c gnomAD_NFE_AF:real,ALLELE_NUM:int | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%gnomAD_NFE_AF\t%ALLELE_NUM\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.vcf.gz -c gnomAD_NFE_AF,ALLELE_NUM          | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%gnomAD_NFE_AF\t%ALLELE_NUM\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.bcf -c gnomAD_NFE_AF,ALLELE_NUM          | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%gnomAD_NFE_AF\t%ALLELE_NUM\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.5.vcf.gz -s :synonymous    -c Consequence | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.5.bcf -s :synonymous    -c Consequence | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.5.vcf.gz -s :synonymous -x -c Consequence | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.5.bcf -s :synonymous -x -c Consequence | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.6.vcf.gz -c SAS_AF | grep ID=SAS_AF | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.6.bcf -c SAS_AF | grep ID=SAS_AF | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.6.vcf.gz -c - | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.6.bcf -c - | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.6.vcf.gz -c - -s worst | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.6.bcf -c - -s worst | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.7.vcf.gz --annotation 'ANN' -c IMPACT -i 'INFO/IMPACT[*] ~ "MODIFIER"' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.7.bcf --annotation 'ANN' -c IMPACT -i 'INFO/IMPACT[*] ~ "MODIFIER"' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.8.vcf.gz -a BCSQ -s worst -c Consequence,amino_acid_change,BCSQ | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.8.bcf -a BCSQ -s worst -c Consequence,amino_acid_change,BCSQ | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.8.vcf.gz         -s worst -c Consequence,amino_acid_change,BCSQ | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.8.bcf         -s worst -c Consequence,amino_acid_change,BCSQ | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.8.vcf.gz -a BCSQ -s worst -f '%POS\t%Consequence\t%amino_acid_change\t%BCSQ\n' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.8.bcf -a BCSQ -s worst -f '%POS\t%Consequence\t%amino_acid_change\t%BCSQ\n' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.8.vcf.gz         -s worst -f '%POS\t%Consequence\t%amino_acid_change\t%BCSQ\n' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.8.bcf         -s worst -f '%POS\t%Consequence\t%amino_acid_change\t%BCSQ\n' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.9.vcf.gz -a BCSQ -f '%CHROM\t%POS\t%REF\t%ALT\t%BCSQ\n' -d -A tab | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.9.bcf -a BCSQ -f '%CHROM\t%POS\t%REF\t%ALT\t%BCSQ\n' -d -A tab | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.9.vcf.gz -a BCSQ -f '%xPOS %xConsequence\n' -p x | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.9.bcf -a BCSQ -f '%xPOS %xConsequence\n' -p x | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.10.vcf.gz -a CSQ -f '%M_CAP_pred %M_CAP_score\n' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.10.bcf -a CSQ -f '%M_CAP_pred %M_CAP_score\n' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.10.vcf.gz -a CSQ -f '%xM_CAP_pred %xM_CAP_score\n' -p x | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.10.bcf -a CSQ -f '%xM_CAP_pred %xM_CAP_score\n' -p x | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.10.vcf.gz        -f '%xM_CAP_pred %xM_CAP_score\n' -p x | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.10.bcf        -f '%xM_CAP_pred %xM_CAP_score\n' -p x | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.gene-list.vcf.gz -d -f '%CHROM:%POS %Gene %Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.gene-list.bcf -d -f '%CHROM:%POS %Gene %Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.gene-list.vcf.gz -d -f '%CHROM:%POS %Gene %Consequence\n' -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split-vep.gene-list.txt | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.gene-list.bcf -d -f '%CHROM:%POS %Gene %Consequence\n' -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split-vep.gene-list.txt | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.gene-list.vcf.gz -d -f '%CHROM:%POS %Gene %Consequence\n' -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split-vep.mixed-list.txt --gene-list-fields Feature,SYMBOL | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.gene-list.bcf -d -f '%CHROM:%POS %Gene %Consequence\n' -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split-vep.mixed-list.txt --gene-list-fields Feature,SYMBOL | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.gene-list.vcf.gz -d -f '%CHROM:%POS %Gene %Consequence\n' -g +/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split-vep.gene-list.txt | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.gene-list.bcf -d -f '%CHROM:%POS %Gene %Consequence\n' -g +/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split-vep.gene-list.txt | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.gene-list.vcf.gz -d -f '%CHROM:%POS %Gene %Consequence\n' -g +/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split-vep.mixed-list.txt --gene-list-fields Feature,SYMBOL | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.gene-list.bcf -d -f '%CHROM:%POS %Gene %Consequence\n' -g +/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split-vep.mixed-list.txt --gene-list-fields Feature,SYMBOL | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.broken-LoF.vcf.gz -d -f '%CHROM:%POS %Consequence %LoF_info\n' -a vep | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.broken-LoF.bcf -d -f '%CHROM:%POS %Consequence %LoF_info\n' -a vep | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.broken-LoF.vcf.gz -d -f '%CHROM:%POS %LoF_info\n' -a vep -i 'Consequence=="frameshift_variant"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.broken-LoF.bcf -d -f '%CHROM:%POS %LoF_info\n' -a vep -i 'Consequence=="frameshift_variant"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.vcf.gz -f'%POS\n' -i'SYMBOL~"SAMD11"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.bcf -f'%POS\n' -i'SYMBOL~"SAMD11"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.vcf.gz -f'%POS\t%MAX_AF\n' -i'MAX_AF>0.999' -c MAX_AF,MAX_AF:float,MAX_AF | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.bcf -f'%POS\t%MAX_AF\n' -i'MAX_AF>0.999' -c MAX_AF,MAX_AF:float,MAX_AF | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.filter.vcf.gz -s worst -i'CSQ~"nonsense"' -f '%POS %Consequence %Feature %BIOTYPE' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.filter.bcf -s worst -i'CSQ~"nonsense"' -f '%POS %Consequence %Feature %BIOTYPE' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.filter.vcf.gz -s worst -i'CSQ~"nonsense"' -f '%POS %Consequence %Feature %BIOTYPE %CSQ' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.filter.bcf -s worst -i'CSQ~"nonsense"' -f '%POS %Consequence %Feature %BIOTYPE %CSQ' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.select-tr-expr.vcf.gz -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s primary | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.select-tr-expr.bcf -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s primary | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.select-tr-expr.vcf.gz -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s CANONICAL=YES | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.select-tr-expr.bcf -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s CANONICAL=YES | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.select-tr-expr.vcf.gz -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s CANONICAL!=YES | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.select-tr-expr.bcf -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s CANONICAL!=YES | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.select-tr-expr.vcf.gz -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s CANONICAL= | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.select-tr-expr.bcf -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s CANONICAL= | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.select-tr-expr.vcf.gz -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s mane | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.select-tr-expr.bcf -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s mane | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.select-tr-expr.vcf.gz -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s MANE_SELECT!='' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.select-tr-expr.bcf -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s MANE_SELECT!='' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.select-tr-expr.vcf.gz -s mane | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.select-tr-expr.bcf -s mane | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.select-tr-expr.vcf.gz -s primary | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.select-tr-expr.bcf -s primary | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.select-tr-expr.vcf.gz -s PolyPhen~damaging | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.select-tr-expr.bcf -s PolyPhen~damaging | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.types.vcf.gz -f'%cDNA_position %CDS_position %Protein_position' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.types.bcf -f'%cDNA_position %CDS_position %Protein_position' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.types.vcf.gz -f'%cDNA_position %CDS_position %Protein_position' -c cDNA_position:int,CDS_position:int,Protein_position:int | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.types.bcf -f'%cDNA_position %CDS_position %Protein_position' -c cDNA_position:int,CDS_position:int,Protein_position:int | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.filter-missing-bt2098.vcf.gz -e 'gnomad_genomes_AF >= 0.02' | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM %POS 	 %gnomad_genomes_AF
' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.filter-missing-bt2098.bcf -e 'gnomad_genomes_AF >= 0.02' | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM %POS 	 %gnomad_genomes_AF
' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.filter-missing-bt2098.vcf.gz -i 'gnomad_genomes_AF < 0.02 || gnomad_genomes_AF=="."' | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM %POS 	 %gnomad_genomes_AF
' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/teAXFodfS9/split-vep.filter-missing-bt2098.bcf -i 'gnomad_genomes_AF < 0.02 || gnomad_genomes_AF=="."' | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM %POS 	 %gnomad_genomes_AF
' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +parental-origin /tmp/teAXFodfS9/parental-origin.vcf.gz -r 20:100 -p proband,father,mother -t del | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +parental-origin /tmp/teAXFodfS9/parental-origin.bcf -r 20:100 -p proband,father,mother -t del | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +parental-origin /tmp/teAXFodfS9/parental-origin.vcf.gz -r 20:101 -p proband,father,mother -t del | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +parental-origin /tmp/teAXFodfS9/parental-origin.bcf -r 20:101 -p proband,father,mother -t del | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +parental-origin /tmp/teAXFodfS9/parental-origin.vcf.gz -r 20:102 -p proband,father,mother -t del | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +parental-origin /tmp/teAXFodfS9/parental-origin.bcf -r 20:102 -p proband,father,mother -t del | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +parental-origin /tmp/teAXFodfS9/parental-origin.vcf.gz -r 20:103 -p proband,father,mother -t dup | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +parental-origin /tmp/teAXFodfS9/parental-origin.bcf -r 20:103 -p proband,father,mother -t dup | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +parental-origin /tmp/teAXFodfS9/parental-origin.vcf.gz -r 20:104 -p proband,father,mother -t dup | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +parental-origin /tmp/teAXFodfS9/parental-origin.bcf -r 20:104 -p proband,father,mother -t dup | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 1 -a r2,LD,HD /tmp/teAXFodfS9/prune.1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 1 -a r2,LD,HD /tmp/teAXFodfS9/prune.1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 1 -a r2,LD,HD /tmp/teAXFodfS9/prune.2.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 1 -a r2,LD,HD /tmp/teAXFodfS9/prune.2.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 2 -a r2 -m 0.5 -f MaxR2 /tmp/teAXFodfS9/prune.1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 2 -a r2 -m 0.5 -f MaxR2 /tmp/teAXFodfS9/prune.1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 2 -a r2 -m 0.5  /tmp/teAXFodfS9/prune.1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 2 -a r2 -m 0.5  /tmp/teAXFodfS9/prune.1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 2bp -n 1 --AF-tag AF /tmp/teAXFodfS9/prune.1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 2bp -n 1 --AF-tag AF /tmp/teAXFodfS9/prune.1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 2bp -n 1 --AF-tag AF -i 'GT="alt"' /tmp/teAXFodfS9/prune.1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 2bp -n 1 --AF-tag AF -i 'GT="alt"' /tmp/teAXFodfS9/prune.1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 2bp -n 1 -N 1st /tmp/teAXFodfS9/prune.1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 2bp -n 1 -N 1st /tmp/teAXFodfS9/prune.1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 2bp -n 1 -N rand --random-seed 1 /tmp/teAXFodfS9/prune.1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 2bp -n 1 -N rand --random-seed 1 /tmp/teAXFodfS9/prune.1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 3bp -a count -i 'XX!=0' -k /tmp/teAXFodfS9/prune.3.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 3bp -a count -i 'XX!=0' -k /tmp/teAXFodfS9/prune.3.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 3bp -a count -i 'XX!=0' /tmp/teAXFodfS9/prune.3.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 3bp -a count -i 'XX!=0' /tmp/teAXFodfS9/prune.3.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 3bp -m count=2 -i 'XX!=0' /tmp/teAXFodfS9/prune.3.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 3bp -m count=2 -i 'XX!=0' /tmp/teAXFodfS9/prune.3.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +variant-distance /tmp/teAXFodfS9/variant-distance.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +variant-distance /tmp/teAXFodfS9/variant-distance.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +variant-distance -d nearest /tmp/teAXFodfS9/variant-distance.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +variant-distance -d nearest /tmp/teAXFodfS9/variant-distance.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +variant-distance -d fwd /tmp/teAXFodfS9/variant-distance.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +variant-distance -d fwd /tmp/teAXFodfS9/variant-distance.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +variant-distance -d rev /tmp/teAXFodfS9/variant-distance.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +variant-distance -d rev /tmp/teAXFodfS9/variant-distance.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +variant-distance -d both /tmp/teAXFodfS9/variant-distance.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +variant-distance -d both /tmp/teAXFodfS9/variant-distance.bcf  | grep -v ^##bcftools_
.. ok

test_plugin_vrfs:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +vrfs -a /tmp/teAXFodfS9/mpileup.bam.list -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/vrfs.sites.txt | sort
.. ok

test_plugin_split:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split.1.vcf -o /tmp/teAXFodfS9/split.1.1   && cd /tmp/teAXFodfS9/split.1.1  && for f in A1.vcf A2.vcf A3.vcf B1.vcf B2.vcf C.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H $f; done
.. ok

test_plugin_split:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split.1.vcf -o /tmp/teAXFodfS9/split.1.2 -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split.smpl.1.2.txt  && cd /tmp/teAXFodfS9/split.1.2  && for f in A.vcf B.vcf C.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H $f; done
.. ok

test_plugin_split:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split.1.vcf -o /tmp/teAXFodfS9/split.1.3 -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split.smpl.1.3.txt  && cd /tmp/teAXFodfS9/split.1.3  && for f in a3.vcf b2.vcf c.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H $f; done
.. ok

test_plugin_split:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split.1.vcf -o /tmp/teAXFodfS9/split.1.4 -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split.smpl.1.3.txt -i 'GT[0]="alt"'  && cd /tmp/teAXFodfS9/split.1.4  && for f in a3.vcf b2.vcf c.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H $f; done
.. ok

test_plugin_split:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split.1.vcf -o /tmp/teAXFodfS9/split.1.5 -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split.smpl.1.3.txt -i 'GT="alt"'  && cd /tmp/teAXFodfS9/split.1.5  && for f in a3.vcf b2.vcf c.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H $f; done
.. ok

test_plugin_split:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split.1.vcf -o /tmp/teAXFodfS9/split.1.6 -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split.smpl.1.4.txt -i 'GT="alt"'  && cd /tmp/teAXFodfS9/split.1.6  && for f in file1.vcf file2.vcf file3.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H $f; done
.. ok

test_plugin_split:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split.1.vcf -o /tmp/teAXFodfS9/split.1.7 -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split.grp.1.1.txt  && cd /tmp/teAXFodfS9/split.1.7  && for f in A.vcf A1.vcf A2.vcf B.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H $f; done
.. ok

test_plugin_split:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split.2.vcf -o /tmp/teAXFodfS9/split.2.1   && cd /tmp/teAXFodfS9/split.2.1  && for f in A1_A1-1.vcf A1_A1-2.vcf A1_A1.vcf B1.vcf B2.vcf C.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H $f; done
.. ok

test_plugin_scatter:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +scatter /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/scatter.1.vcf -o /tmp/teAXFodfS9/scatter.1.1 -n 3 && cd /tmp/teAXFodfS9/scatter.1.1 && cat 0.vcf 1.vcf 2.vcf | grep -v ^##
.. ok

test_plugin_scatter:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +scatter /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/scatter.1.vcf -o /tmp/teAXFodfS9/scatter.1.2 -s 21,22 && cd /tmp/teAXFodfS9/scatter.1.2 && cat 21.vcf 22.vcf | grep -v ^##
.. ok

test_plugin_scatter:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +scatter /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/scatter.1.vcf -o /tmp/teAXFodfS9/scatter.1.3 -s 21,22 -x X && cd /tmp/teAXFodfS9/scatter.1.3 && cat 21.vcf 22.vcf X.vcf | grep -v ^##
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --no-version -G  /tmp/teAXFodfS9/concat.1.a.vcf.gz /tmp/teAXFodfS9/concat.1.b.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat -Ob -G  /tmp/teAXFodfS9/concat.1.a.vcf.gz /tmp/teAXFodfS9/concat.1.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --no-version -G  /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/concat.1.a.vcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/concat.1.b.vcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --no-version   /tmp/teAXFodfS9/concat.1.a.vcf.gz /tmp/teAXFodfS9/concat.1.b.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat -Ob   /tmp/teAXFodfS9/concat.1.a.vcf.gz /tmp/teAXFodfS9/concat.1.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --no-version   /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/concat.1.a.vcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/concat.1.b.vcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --no-version   /tmp/teAXFodfS9/concat.1.a.bcf /tmp/teAXFodfS9/concat.1.b.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat -Ob   /tmp/teAXFodfS9/concat.1.a.bcf /tmp/teAXFodfS9/concat.1.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --no-version -a  /tmp/teAXFodfS9/concat.2.a.vcf.gz /tmp/teAXFodfS9/concat.2.b.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat -Ob -a  /tmp/teAXFodfS9/concat.2.a.vcf.gz /tmp/teAXFodfS9/concat.2.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --no-version -a  /tmp/teAXFodfS9/concat.2.a.bcf /tmp/teAXFodfS9/concat.2.b.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat -Ob -a  /tmp/teAXFodfS9/concat.2.a.bcf /tmp/teAXFodfS9/concat.2.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --no-version -aD  /tmp/teAXFodfS9/concat.2.a.vcf.gz /tmp/teAXFodfS9/concat.2.b.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat -Ob -aD  /tmp/teAXFodfS9/concat.2.a.vcf.gz /tmp/teAXFodfS9/concat.2.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --no-version -aD  /tmp/teAXFodfS9/concat.2.a.bcf /tmp/teAXFodfS9/concat.2.b.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat -Ob -aD  /tmp/teAXFodfS9/concat.2.a.bcf /tmp/teAXFodfS9/concat.2.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --no-version -l --ligate-warn  /tmp/teAXFodfS9/concat.3.a.vcf.gz /tmp/teAXFodfS9/concat.3.b.vcf.gz /tmp/teAXFodfS9/concat.3.0.vcf.gz /tmp/teAXFodfS9/concat.3.c.vcf.gz /tmp/teAXFodfS9/concat.3.d.vcf.gz /tmp/teAXFodfS9/concat.3.e.vcf.gz /tmp/teAXFodfS9/concat.3.f.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat -Ob -l --ligate-warn  /tmp/teAXFodfS9/concat.3.a.vcf.gz /tmp/teAXFodfS9/concat.3.b.vcf.gz /tmp/teAXFodfS9/concat.3.0.vcf.gz /tmp/teAXFodfS9/concat.3.c.vcf.gz /tmp/teAXFodfS9/concat.3.d.vcf.gz /tmp/teAXFodfS9/concat.3.e.vcf.gz /tmp/teAXFodfS9/concat.3.f.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --no-version -l --ligate-warn  /tmp/teAXFodfS9/concat.3.a.bcf /tmp/teAXFodfS9/concat.3.b.bcf /tmp/teAXFodfS9/concat.3.0.bcf /tmp/teAXFodfS9/concat.3.c.bcf /tmp/teAXFodfS9/concat.3.d.bcf /tmp/teAXFodfS9/concat.3.e.bcf /tmp/teAXFodfS9/concat.3.f.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat -Ob -l --ligate-warn  /tmp/teAXFodfS9/concat.3.a.bcf /tmp/teAXFodfS9/concat.3.b.bcf /tmp/teAXFodfS9/concat.3.0.bcf /tmp/teAXFodfS9/concat.3.c.bcf /tmp/teAXFodfS9/concat.3.d.bcf /tmp/teAXFodfS9/concat.3.e.bcf /tmp/teAXFodfS9/concat.3.f.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
Random seed for test_naive_concat: 9884630201767329586
.. ok

test_naive_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --naive-force /tmp/teAXFodfS9/naive_concat.0.bcf /tmp/teAXFodfS9/naive_concat.1.bcf /tmp/teAXFodfS9/naive_concat.2.bcf /tmp/teAXFodfS9/naive_concat.3.bcf /tmp/teAXFodfS9/naive_concat.4.bcf /tmp/teAXFodfS9/naive_concat.5.bcf /tmp/teAXFodfS9/naive_concat.6.bcf /tmp/teAXFodfS9/naive_concat.7.bcf /tmp/teAXFodfS9/naive_concat.8.bcf /tmp/teAXFodfS9/naive_concat.9.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H
.. ok

test_naive_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --naive /tmp/teAXFodfS9/naive_concat.0.vcf.gz /tmp/teAXFodfS9/naive_concat.1.vcf.gz /tmp/teAXFodfS9/naive_concat.2.vcf.gz /tmp/teAXFodfS9/naive_concat.3.vcf.gz /tmp/teAXFodfS9/naive_concat.4.vcf.gz /tmp/teAXFodfS9/naive_concat.5.vcf.gz /tmp/teAXFodfS9/naive_concat.6.vcf.gz /tmp/teAXFodfS9/naive_concat.7.vcf.gz /tmp/teAXFodfS9/naive_concat.8.vcf.gz /tmp/teAXFodfS9/naive_concat.9.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --no-version -l  /tmp/teAXFodfS9/concat.4.a.vcf.gz /tmp/teAXFodfS9/concat.4.b.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat -Ob -l  /tmp/teAXFodfS9/concat.4.a.vcf.gz /tmp/teAXFodfS9/concat.4.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --no-version -l  /tmp/teAXFodfS9/concat.4.a.bcf /tmp/teAXFodfS9/concat.4.b.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat -Ob -l  /tmp/teAXFodfS9/concat.4.a.bcf /tmp/teAXFodfS9/concat.4.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --no-version -l --ligate-warn  /tmp/teAXFodfS9/concat.5.a.vcf.gz /tmp/teAXFodfS9/concat.5.b.vcf.gz /tmp/teAXFodfS9/concat.5.c.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat -Ob -l --ligate-warn  /tmp/teAXFodfS9/concat.5.a.vcf.gz /tmp/teAXFodfS9/concat.5.b.vcf.gz /tmp/teAXFodfS9/concat.5.c.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --no-version -l --ligate-warn  /tmp/teAXFodfS9/concat.5.a.bcf /tmp/teAXFodfS9/concat.5.b.bcf /tmp/teAXFodfS9/concat.5.c.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat -Ob -l --ligate-warn  /tmp/teAXFodfS9/concat.5.a.bcf /tmp/teAXFodfS9/concat.5.b.bcf /tmp/teAXFodfS9/concat.5.c.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --no-version -l --ligate-force  /tmp/teAXFodfS9/concat.5.a.bcf /tmp/teAXFodfS9/concat.5.b.bcf /tmp/teAXFodfS9/concat.5.c.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat -Ob -l --ligate-force  /tmp/teAXFodfS9/concat.5.a.bcf /tmp/teAXFodfS9/concat.5.b.bcf /tmp/teAXFodfS9/concat.5.c.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --no-version -G -a -D  /tmp/teAXFodfS9/concat.5.a.vcf.gz /tmp/teAXFodfS9/concat.5.b.vcf.gz /tmp/teAXFodfS9/concat.5.c.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat -Ob -G -a -D  /tmp/teAXFodfS9/concat.5.a.vcf.gz /tmp/teAXFodfS9/concat.5.b.vcf.gz /tmp/teAXFodfS9/concat.5.c.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --no-version -G -a -D  /tmp/teAXFodfS9/concat.5.a.bcf /tmp/teAXFodfS9/concat.5.b.bcf /tmp/teAXFodfS9/concat.5.c.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat -Ob -G -a -D  /tmp/teAXFodfS9/concat.5.a.bcf /tmp/teAXFodfS9/concat.5.b.bcf /tmp/teAXFodfS9/concat.5.c.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.hdr /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.hdr | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.hdr /tmp/teAXFodfS9/reheader.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/teAXFodfS9/reheader.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.hdr | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.hdr /tmp/teAXFodfS9/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/teAXFodfS9/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.hdr | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples /tmp/teAXFodfS9/reheader.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/teAXFodfS9/reheader.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples /tmp/teAXFodfS9/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/teAXFodfS9/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -N /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -N /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -N /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples /tmp/teAXFodfS9/reheader.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/teAXFodfS9/reheader.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -N /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -N /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples /tmp/teAXFodfS9/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/teAXFodfS9/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -N /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -n AAA,BBB /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -n AAA,BBB | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -n AAA,BBB /tmp/teAXFodfS9/reheader.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/teAXFodfS9/reheader.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -n AAA,BBB | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -n AAA,BBB /tmp/teAXFodfS9/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/teAXFodfS9/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -n AAA,BBB | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples2 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples2 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples2 /tmp/teAXFodfS9/reheader.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/teAXFodfS9/reheader.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples2 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples2 /tmp/teAXFodfS9/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/teAXFodfS9/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples2 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples3 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples3 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples3 /tmp/teAXFodfS9/reheader.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/teAXFodfS9/reheader.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples3 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples3 /tmp/teAXFodfS9/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/teAXFodfS9/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples3 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples4 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples4 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples4 /tmp/teAXFodfS9/reheader.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/teAXFodfS9/reheader.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples4 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples4 /tmp/teAXFodfS9/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/teAXFodfS9/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples4 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.empty.hdr /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/empty.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/empty.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.empty.hdr | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.empty.hdr /tmp/teAXFodfS9/empty.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/teAXFodfS9/empty.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.empty.hdr | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.empty.hdr /tmp/teAXFodfS9/empty.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/teAXFodfS9/empty.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.empty.hdr | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.fai /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.fai /tmp/teAXFodfS9/reheader.2.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.fai /tmp/teAXFodfS9/reheader.2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.2.hdr -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.fai /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.2.hdr -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.fai /tmp/teAXFodfS9/reheader.2.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.2.hdr -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.fai /tmp/teAXFodfS9/reheader.2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.3.fai /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.3.fai /tmp/teAXFodfS9/reheader.3.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.3.fai /tmp/teAXFodfS9/reheader.3.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_rename_chrs:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate --rename-chrs /tmp/teAXFodfS9/rename.map -Ov /tmp/teAXFodfS9/annotate.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM\t%POS\n'
.. ok

test_rename_chrs:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate --rename-chrs /tmp/teAXFodfS9/rename.map -Ob /tmp/teAXFodfS9/annotate.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM\t%POS\n'
.. ok

test_rename_chrs:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate --rename-chrs /tmp/teAXFodfS9/rename.map -Ov /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM\t%POS\n'
.. ok

test_rename_chrs:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate --rename-chrs /tmp/teAXFodfS9/rename.map -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM\t%POS\n'
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g -,. /tmp/teAXFodfS9/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g -,.
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g -,. --vcf-ids /tmp/teAXFodfS9/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g -,. --vcf-ids
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g -,. --vcf-ids --3N6 /tmp/teAXFodfS9/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g -,. --vcf-ids --3N6
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g .,- /tmp/teAXFodfS9/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g .,-
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert  --vcf-ids -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.ids.gen,/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert  --vcf-ids -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.ids.gen,/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.ids.gen,/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.ids.gen,/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --3N6 -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.ids.3N6.gen,/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --3N6 -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.ids.3N6.gen,/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --vcf-ids -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.ids.gen.rev,/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --vcf-ids -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.ids.gen.rev,/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.ids.gen.rev,/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.ids.gen.rev,/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g -,. --tag PL /tmp/teAXFodfS9/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g -,. --tag PL
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g .,- --tag PL /tmp/teAXFodfS9/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g .,- --tag PL
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g -,. --vcf-ids /tmp/teAXFodfS9/check.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/check.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g -,. --vcf-ids
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g .,- --vcf-ids /tmp/teAXFodfS9/check.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/check.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g .,- --vcf-ids
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g -,. --3N6 /tmp/teAXFodfS9/check.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/check.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g -,. --3N6
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g .,- --3N6 /tmp/teAXFodfS9/check.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/check.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g .,- --3N6
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g -,. --3N6 --vcf-ids /tmp/teAXFodfS9/check.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/check.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g -,. --3N6 --vcf-ids
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g .,- --3N6 --vcf-ids /tmp/teAXFodfS9/check.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/check.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g .,- --3N6 --vcf-ids
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -h -,.,. /tmp/teAXFodfS9/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -h -,.,.
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -h .,-,. /tmp/teAXFodfS9/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -h .,-,.
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -h .,-,. --vcf-ids /tmp/teAXFodfS9/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -h .,-,. --vcf-ids
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -h .,.,- /tmp/teAXFodfS9/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -h .,.,-
.. ok

test_vcf_convert_hls2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -H /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.hls.gt.hap,/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.hls.gt.legend,/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.hls.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hls2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -H /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.hls.gt.hap,/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.hls.gt.legend,/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.hls.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --haplegendsample -,.,. /tmp/teAXFodfS9/convert.hap-missing.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/convert.hap-missing.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --haplegendsample -,.,.
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --hapsample -,. /tmp/teAXFodfS9/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --hapsample -,.
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --hapsample -,. --vcf-ids /tmp/teAXFodfS9/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --hapsample -,. --vcf-ids
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --hapsample .,- /tmp/teAXFodfS9/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --hapsample .,-
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --hapsample2vcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.hs.gt.hap,/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.hs.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --hapsample2vcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.hs.gt.hap,/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.hs.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --vcf-ids --hapsample2vcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.hs.gt.ids.hap,/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.hs.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --vcf-ids --hapsample2vcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.hs.gt.ids.hap,/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.hs.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##
.. ok

test_vcf_convert_gvcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --no-version --gvcf2vcf -i'FILTER="PASS"' -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa /tmp/teAXFodfS9/convert.gvcf.vcf.gz
.. ok

test_vcf_convert_gvcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --no-version --gvcf2vcf -i'FILTER="PASS"' -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa /tmp/teAXFodfS9/convert.gvcf.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_convert_gvcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/convert.gvcf.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --gvcf2vcf -i'FILTER="PASS"' -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa | grep -v ^##bcftools
.. ok

test_vcf_convert_gvcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --no-version --gvcf2vcf -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa /tmp/teAXFodfS9/convert.gvcf.2.vcf.gz
.. ok

test_vcf_convert_gvcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --no-version --gvcf2vcf -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa /tmp/teAXFodfS9/convert.gvcf.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_convert_gvcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/teAXFodfS9/convert.gvcf.2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --gvcf2vcf -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa | grep -v ^##bcftools
.. ok

test_vcf_convert_tsv2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --no-version  -c ID,CHROM,POS,AA -s SAMPLE1 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/23andme.fa --tsv2vcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.23andme
.. ok

test_vcf_convert_tsv2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -Ou  -c ID,CHROM,POS,AA -s SAMPLE1 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/23andme.fa --tsv2vcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.23andme | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_convert_tsv2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --no-version  -c -,CHROM,POS,REF,ALT -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/23andme.fa --tsv2vcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.tsv
.. ok

test_vcf_convert_tsv2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -Ou  -c -,CHROM,POS,REF,ALT -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/23andme.fa --tsv2vcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.tsv | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.gvcf-missing.1.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.gvcf-missing.fa --missing N  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.gvcf-missing.1.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.gvcf-missing.fa --missing N  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.overlaps.1.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.overlaps.2.fa -s A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.overlaps.1.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.overlaps.2.fa -s A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.overlaps.1.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.overlaps.1.fa -s A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.overlaps.1.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.overlaps.1.fa -s A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.overlaps.1.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.overlaps.1.fa -s B  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.overlaps.1.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.overlaps.1.fa -s B  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.overlaps.1.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.overlaps.1.fa -s A -a N  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.overlaps.1.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.overlaps.1.fa -s A -a N  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.overlaps.1.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.overlaps.1.fa -s B -a N  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.overlaps.1.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.overlaps.1.fa -s B -a N  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.beyond.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.beyond.fa   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.beyond.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.beyond.fa   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s - -m /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.tab 
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s - -m /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.tab 
.. ok

test_vcf_consensus_chain:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s - -m /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.tab -c /tmp/teAXFodfS9/consensus.1.chain.new >/dev/null; cat /tmp/teAXFodfS9/consensus.1.chain.new
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -H 1 -m /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.tab 
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -H 1 -m /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.tab 
.. ok

test_vcf_consensus_chain:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -H 1 -m /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.tab -c /tmp/teAXFodfS9/consensus.2.chain.new >/dev/null; cat /tmp/teAXFodfS9/consensus.2.chain.new
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -I -s - -m /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.tab 
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -I -s - -m /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.tab 
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s - -I -m /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.tab --mask-with X -m /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.tab --mask-with lc  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s - -I -m /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.tab --mask-with X -m /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.tab --mask-with lc  
.. ok

test_vcf_consensus_chain:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -I -m /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.tab -c /tmp/teAXFodfS9/consensus.3.chain.new >/dev/null; cat /tmp/teAXFodfS9/consensus.3.chain.new
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -H 1  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -H 1  
.. ok

test_vcf_consensus_chain:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -H 1  -c /tmp/teAXFodfS9/consensus.4.chain.new >/dev/null; cat /tmp/teAXFodfS9/consensus.4.chain.new
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus2.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus2.fa -H 1  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus2.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus2.fa -H 1  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus2.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus2.fa -H 2  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus2.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus2.fa -H 2  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/empty.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/empty.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus3.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus2.fa -H 2 -M "?"  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus3.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus2.fa -H 2 -M "?"  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus3.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus2.fa -H 2 -M "?" -p xx_  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus3.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus2.fa -H 2 -M "?" -p xx_  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus4.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus2.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus4.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus2.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus5.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus5.fa --haplotype LA  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus5.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus5.fa --haplotype LA  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus6.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus6.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus6.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus6.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus7.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus7.fa -H 2  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus7.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus7.fa -H 2  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus7.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus7.fa -H 4  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus7.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus7.fa -H 4  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus7.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus7.fa -H 2pIu  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus7.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus7.fa -H 2pIu  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus7.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus7.fa -H 4pIu  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus7.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus7.fa -H 4pIu  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus7.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus7.fa -H 1  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus7.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus7.fa -H 1  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus7.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus7.fa -H 3  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus7.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus7.fa -H 3  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus7.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus7.fa -H 1pIu  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus7.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus7.fa -H 1pIu  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus7.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus7.fa -H 3pIu  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus7.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus7.fa -H 3pIu  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus8.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus8.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus8.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s - -a .  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus8.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s - -a .  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus8.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s - -a . -i 'type="snp" || type="ref"'  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus8.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s - -a . -i 'type="snp" || type="ref"'  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus8.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s - -a . -i 'ALT!="<DEL>"'  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus8.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s - -a . -i 'ALT!="<DEL>"'  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus8.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s - -a . -e 'MinDP>15'  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus8.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s - -a . -e 'MinDP>15'  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus8.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s - -a . -e 'MinDP<15'  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus8.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s - -a . -e 'MinDP<15'  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.9.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.9.1.fa -H A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.9.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.9.1.fa -H A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.9.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.9.2.fa -H A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.9.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.9.2.fa -H A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.10.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.9.1.fa -H A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.10.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.9.1.fa -H A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.10.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.9.2.fa -H A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.10.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.9.2.fa -H A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.11.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.11.fa -s smpl  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.11.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.11.fa -s smpl  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.11.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.11.fa -s smpl -a N  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.11.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.11.fa -s smpl -a N  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.12.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.12.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.12.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.12.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.13.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.13.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.13.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.13.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.14.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.14.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.14.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.14.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.12.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.12.fa -s - --mark-del - --mark-ins uc --mark-snv uc  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.12.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.12.fa -s - --mark-del - --mark-ins uc --mark-snv uc  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.12.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.12.fa -s - --mark-del - --mark-ins + --mark-snv :  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.12.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.12.fa -s - --mark-del - --mark-ins + --mark-snv :  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.15.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.15.fa -H I --mark-ins lc --mark-snv lc  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.15.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.15.fa -H I --mark-ins lc --mark-snv lc  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.16.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s - -I  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.16.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s - -I  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.16.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -H I  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.16.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -H I  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.17.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus2.fa -s - -M N -m /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.17.bed 
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.17.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus2.fa -s - -M N -m /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.17.bed 
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.18.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.18.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.18.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.18.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.19.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.19.fa -s -   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.19.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.19.fa -s -   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.20.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.20.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.20.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.20.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.20.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.20.fa   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.20.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.20.fa   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.20.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.20.fa -M . -s b  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.20.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.20.fa -M . -s b  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.20.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.20.fa -M . -s a  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.20.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.20.fa -M . -s a  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.20.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.20.fa -M . -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.20.b.txt  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.20.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.20.fa -M . -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.20.b.txt  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.20.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.20.fa -M . -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.20.a.txt  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.20.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.20.fa -M . -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.20.a.txt  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.21.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.21.fa   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.21.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.21.fa   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.22.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.22.fa --regions-overlap 0 --mark-del .  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.22.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.22.fa --regions-overlap 0 --mark-del .  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.22.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.22.fa --regions-overlap 1 --mark-del .  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.22.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.22.fa --regions-overlap 1 --mark-del .  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.22.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.22.fa --regions-overlap 2 --mark-del .  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.22.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.22.fa --regions-overlap 2 --mark-del .  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.22.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.22.fa --regions-overlap 0  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.22.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.22.fa --regions-overlap 0  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.22.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.22.fa --regions-overlap 1  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.22.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.22.fa --regions-overlap 1  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.22.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.22.fa --regions-overlap 2  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/teAXFodfS9/consensus.22.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.22.fa --regions-overlap 2  
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -r 11:10-20 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/iupac.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/iupac.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -r 11:10-20 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/iupac.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/iupac.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -r17:100-102,17:102-103,17:103-104,17:104-105,17:100-105 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -r17:100-102,17:102-103,17:103-104,17:104-105,17:100-105 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -r17:100-102,17:102-103,17:103-104,17:104-105,17:100-105 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -b /tmp/teAXFodfS9/mpileup.bam.list --no-version | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -r17:100-102,17:102-103,17:103-104,17:104-105,17:100-105 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob -b /tmp/teAXFodfS9/mpileup.bam.urllist | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -r17:100-102,17:102-103,17:103-104,17:104-105,17:100-105 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -r17:100-102,17:102-103,17:103-104,17:104-105,17:100-105 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -r17:100-102,17:102-103,17:103-104,17:104-105,17:100-105 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -b /tmp/teAXFodfS9/mpileup.cram.list --no-version | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -r17:100-102,17:102-103,17:103-104,17:104-105,17:100-105 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob -b /tmp/teAXFodfS9/mpileup.cram.urllist | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -r17:100-150 -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -r17:100-150 -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -r17:100-150 -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -b /tmp/teAXFodfS9/mpileup.bam.list --no-version | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -r17:100-150 -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob -b /tmp/teAXFodfS9/mpileup.bam.urllist | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -r17:100-150 -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -r17:100-150 -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -r17:100-150 -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -b /tmp/teAXFodfS9/mpileup.cram.list --no-version | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -r17:100-150 -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob -b /tmp/teAXFodfS9/mpileup.cram.urllist | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,DV -r17:100-600 -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,DV -r17:100-600 -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,DV -r17:100-600 -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,DV -r17:100-600 -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -B --ff 0x14 -r17:1050-1060 -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -B --ff 0x14 -r17:1050-1060 -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -B --ff 0x14 -r17:1050-1060 -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -B --ff 0x14 -r17:1050-1060 -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,DPR,DV,DP4,INFO/DPR,SP,-AD -r17:100-600 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,DPR,DV,DP4,INFO/DPR,SP,-AD -r17:100-600 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,DPR,DV,DP4,INFO/DPR,SP,-AD -r17:100-600 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,DPR,DV,DP4,INFO/DPR,SP,-AD -r17:100-600 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,AD,ADF,ADR,SP,INFO/AD,INFO/ADF,INFO/ADR -r17:100-600 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,AD,ADF,ADR,SP,INFO/AD,INFO/ADF,INFO/ADR -r17:100-600 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,AD,ADF,ADR,SP,INFO/AD,INFO/ADF,INFO/ADR -r17:100-600 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,AD,ADF,ADR,SP,INFO/AD,INFO/ADF,INFO/ADR -r17:100-600 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,DV,-AD -r17:100-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,DV,-AD -r17:100-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,DV,-AD -r17:100-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,DV,-AD -r17:100-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,DV,-AD -r17:100-200,17:201-300,17:301-400,17:401-500,17:501-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,DV,-AD -r17:100-200,17:201-300,17:301-400,17:401-500,17:501-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,DV,-AD -r17:100-200,17:201-300,17:301-400,17:401-500,17:501-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,DV,-AD -r17:100-200,17:201-300,17:301-400,17:401-500,17:501-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -r17:100-150 -s HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -r17:100-150 -s HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -r17:100-150 -s HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -r17:100-150 -s HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -r17:100-150 -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -r17:100-150 -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -r17:100-150 -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -r17:100-150 -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -r17:100-150 -s ^HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -r17:100-150 -s ^HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -r17:100-150 -s ^HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -r17:100-150 -s ^HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -r17:100-150 -S ^/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -r17:100-150 -S ^/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -r17:100-150 -S ^/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -r17:100-150 -S ^/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t17:100-150 -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.9.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.sam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.sam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t17:100-150 -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.9.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.sam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.sam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.sam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t17:100-150 -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.9.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t17:100-150 -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.9.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t17:100-150 -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.9.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t17:100-150 -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.9.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t17:100-150 -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.10.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.sam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.sam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t17:100-150 -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.10.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.sam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.sam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.sam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t17:100-150 -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.10.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t17:100-150 -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.10.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t17:100-150 -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.10.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t17:100-150 -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.10.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.sam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -s HG00102 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -s HG00102 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.sam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -s HG00102 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -s HG00102 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -s HG00102 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -s HG00102 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -s ^HG99999 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -s ^HG99999 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.sam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -s ^HG99999 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -s ^HG99999 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -s ^HG99999 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -s ^HG99999 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.sam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.sam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.sam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD --indels-cns -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD --indels-cns -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.sam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD --indels-cns -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD --indels-cns -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD --indels-cns -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD --indels-cns -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD -r 11:75 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD -r 11:75 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD -r 11:75 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD -r 11:75 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD0 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD0 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD0 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD0 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD,INFO/SCR,FMT/SCR -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-SCR.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-SCR.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD,INFO/SCR,FMT/SCR -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-SCR.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-SCR.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD,INFO/SCR,FMT/SCR -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-SCR.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-SCR.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD,INFO/SCR,FMT/SCR -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-SCR.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-SCR.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t 1:100 --skip-all-set PAIRED,PROPER_PAIR,MREVERSE -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-SCR.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-filter.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t 1:100 --skip-all-set PAIRED,PROPER_PAIR,MREVERSE -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-SCR.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-filter.sam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t 1:100 --skip-any-set READ1 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-SCR.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-filter.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t 1:100 --skip-any-set READ1 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-SCR.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-filter.sam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t 1:100 --skip-all-unset READ1 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-SCR.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-filter.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t 1:100 --skip-all-unset READ1 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-SCR.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-filter.sam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t 1:100 --skip-any-unset READ1 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-SCR.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-filter.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t 1:100 --skip-any-unset READ1 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-SCR.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-filter.sam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD,INFO/NMBZ -r chr19:69-99 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/annot-NMBZ.1.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/annot-NMBZ.1.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD,INFO/NMBZ -r chr19:69-99 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/annot-NMBZ.1.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/annot-NMBZ.1.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD,INFO/NMBZ -r chr6:75 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/annot-NMBZ.2.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/annot-NMBZ.2.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD,INFO/NMBZ -r chr6:75 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/annot-NMBZ.2.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/annot-NMBZ.2.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD,INFO/NMBZ -r chr16:75 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/annot-NMBZ.3.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/annot-NMBZ.3.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/annot-NMBZ.3.2.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD,INFO/NMBZ -r chr16:75 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/annot-NMBZ.3.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/annot-NMBZ.3.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/annot-NMBZ.3.2.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.1.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.1.gff -pa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.1.vcf | grep -v ^#
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.1.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.1.gff -pa -G1 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.1.vcf | grep -v ^#
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.1.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.1.gff -pa -Ot /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.1.vcf | grep -v ^#
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.1.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.1.gff -pa -Ot -G1 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.1.vcf | grep -v ^#
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.2.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.2.gff -pa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.2.vcf | grep -v ^#
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.2.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.2.gff -pa -G1 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.2.vcf | grep -v ^#
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.2.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.2.gff -pa -Ot /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.2.vcf | grep -v ^#
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.2.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.2.gff -pa -Ot -G1 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.2.vcf | grep -v ^#
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.ismpl.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.ismpl.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.ismpl.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%SAMPLE %GT %BCSQ %TBCSQ\n]'
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.splice.issue-2543.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.splice.issue-2543.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.splice.issue-2543.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.oob-codon.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.oob-codon.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.oob-codon.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.gff3 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.chr.gff3 --unify-chr-names -,chr,- /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.2.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.2.gff --ncsq 64 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.nchr.gff -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.nchr.fa --unify-chr-names -,-,- /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.nchr.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.nchr.gff -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.ychr.fa --unify-chr-names -,-,chr /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.nchr.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.ychr.gff -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.nchr.fa --unify-chr-names -,chr,- /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.nchr.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.ychr.gff -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.ychr.fa --unify-chr-names -,chr,chr /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.nchr.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.ychr.gff -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.ychr.fa --unify-chr-names chr,chr,chr /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.ychr.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.nchr.gff -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.ychr.fa --unify-chr-names chr,-,chr /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.ychr.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.ychr.gff -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.nchr.fa --unify-chr-names chr,chr,- /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.ychr.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.nchr.gff -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.nchr.fa --unify-chr-names chr,-,- /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.ychr.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.nchr.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.ychr.gff --unify-chr-names Chromosome,chr,- /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.yychr.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000303039/ENST00000303039.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000303039/ENST00000303039.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000303039/not-a-stop.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000303039/ENST00000303039.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000303039/ENST00000303039.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000303039/not-a-stop.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000593942/ENST00000593942.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000593942/ENST00000593942.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000593942/last-codon-deletion.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000528237/ENST00000528237.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000528237/ENST00000528237.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000528237/retained-stop-incomplete-cds.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000422159 && /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENST00000422159.fa -g ENST00000422159.gff multiallelic.vcf  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%REF\t%ALT\t%GT\t%TBCSQ\n]' | ../sort-csq -q ; echo ; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENST00000422159.fa -g short.gff multiallelic.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%REF\t%ALT\t%GT\t%TBCSQ\n]' | ../sort-csq -q
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000390520/ENST00000390520.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000390520/ENST00000390520.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000390520/deletion-overlap.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000543077/ENST00000543077.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000543077/ENST00000543077.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000543077/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000543077/ENST00000543077.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000543077/ENST00000543077.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000543077/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/EMN908947 && /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f EMN908947.fa -g ribosomal-slippage.gff ribosomal-slippage.vcf --force | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/EMN908947 && /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f EMN908947.fa -g simple.gff simple.vcf | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000379416 && /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -B 3 -f ENST00000379416.fa -g ENST00000379416.gff compound.del-snp.vcf       | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -B 3 -f ENST00000379416.fa -g ENST00000379416.gff compound.ins-del.vcf       | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -B 3 -f ENST00000379416.fa -g ENST00000379416.gff compound.ins-ins.vcf       | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -B 3 -f ENST00000379416.fa -g ENST00000379416.gff compound.ins-snp.vcf       | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -B 3 -f ENST00000379416.fa -g ENST00000379416.gff single.vcf                 | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000301246/ENST00000301246.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000301246/ENST00000301246.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000301246/15bp-insert.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000295641/ENST00000295641.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000295641/ENST00000295641.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000295641/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000295641/ENST00000295641.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000295641/ENST00000295641.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000295641/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000518414-ENST00000521270/ENST00000518414-ENST00000521270.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000518414-ENST00000521270/ENST00000518414-ENST00000521270.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000518414-ENST00000521270/valgrind.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000571540/ENST00000571540.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000571540/ENST00000571540.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000571540/nmd.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000285021/ENST00000285021.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000285021/ENST00000285021.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000285021/stop-gained-inframe-indel.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000479739/ENST00000479739.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000479739/ENST00000479739.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000479739/short-cds-start-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000479739/ENST00000479739.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000479739/ENST00000479739.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000479739/short-cds-start-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000357367/ENST00000357367.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000357367/ENST00000357367.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000357367/stop-retained.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000230048/ENST00000230048.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000230048/ENST00000230048.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000230048/start-del.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000542803/ENST00000542803.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000542803/ENST00000542803.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000542803/splice-region.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000542803/ENST00000542803.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000542803/ENST00000542803.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000542803/splice-region.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/splice-acceptor-donor3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/splice-acceptor-donor3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/splice-acceptor-donor9.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/splice-acceptor-donor9.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/frame2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/frame2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/splice-acceptor-donor1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/splice-acceptor-donor1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/splice-acceptor-donor5.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/splice-acceptor-donor5.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/splice-acceptor-donor8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/splice-acceptor-donor8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/frame1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/frame1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/splice-acceptor-donor6.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/splice-acceptor-donor6.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/splice-acceptor-donor2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/splice-acceptor-donor2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/frame3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/frame3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/splice-acceptor-donor7.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/splice-acceptor-donor7.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/splice-acceptor-donor4.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/splice-acceptor-donor4.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000368801.2 && /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENST00000368801.2.fa -g ENST00000368801.2.gff alt-gencode.vcf -v 0 -C 0 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%BCSQ\n' | ../sort-csq -q
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000368801.2 && /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENST00000368801.2.fa -g ENST00000368801.2.gff alt-gencode.vcf -v 0 -C 1 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%BCSQ\n' | ../sort-csq -q
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000368801.2/ENST00000368801.2.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000368801.2/ENST00000368801.2.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000368801.2/start-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000518414/ENST00000518414.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000518414/ENST00000518414.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000518414/incorrect-inframe-del.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000382647/ENST00000382647.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000382647/ENST00000382647.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000382647/synon-splice-region-insert.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/EDUMMY0001/EDUMMY0001.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/EDUMMY0001/EDUMMY0001.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/EDUMMY0001/starts-with-1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/EDUMMY0001/EDUMMY0001.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/EDUMMY0001/EDUMMY0001.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/EDUMMY0001/starts-with-1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000000001 && /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENST00000000001.fa -g ENST00000000001.gff test.vcf -p a -Ot | grep -v ^#
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000000001 && /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENST00000000001.fa -g ENST00000000001.gff test.vcf -p a | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000400151/ENST00000400151.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000400151/ENST00000400151.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000400151/long-del.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000580206 && /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENST00000580206.fa -g ENST00000580206.gff compound.ins-snv.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENST00000580206.fa -g short.gff compound.ins-snv.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENST00000580206.fa -g ENST00000580206.gff single.ins-snv.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENST00000580206.fa -g short.gff single.ins-snv.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENST00000580206.fa -g ENST00000580206.gff compound.del-snv.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENST00000580206.fa -g short.gff compound.del-snv.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENST00000580206.fa -g short.gff single.del-snv.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENST00000580206.fa -g ENST00000580206.gff compound.del-ins.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENST00000580206.fa -g short.gff compound.del-ins.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENST00000580206.fa -g short.gff single.del-ins.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000520795/ENST00000520795.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000520795/ENST00000520795.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000520795/long-inside-del.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000520795/ENST00000520795.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000520795/ENST00000520795.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000520795/long-inside-del.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000519442/ENST00000519442.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000519442/ENST00000519442.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000519442/synon-splice-region-del.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000420190/ENST00000420190.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000420190/ENST00000420190.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000420190/abort-in-csq-push.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%REF\t%ALT\t%TBCSQ\n]\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000557788/ENST00000557788.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000557788/ENST00000557788.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000557788/long-overlap-del.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/EDUMMY0003/EDUMMY0003.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/EDUMMY0003/EDUMMY0003.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/EDUMMY0003/long-del.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENSMUST00000133836 && /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENSMUST00000133836.fa -g ENSMUST00000133836.gff filter-problem.vcf -i 'FILTER="PASS"' --phase m | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000436063/ENST00000436063.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000436063/ENST00000436063.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000436063/insert-before-utr.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000375992/ENST00000375992.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000375992/ENST00000375992.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000375992/incorrect-synon-del-not-start-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000318249.2/ENST00000318249.2.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000318249.2/ENST00000318249.2.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000318249.2/synonymous-start-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENSMUST00000121418 && /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENSMUST00000121418.fa -g ENSMUST00000121418.gff filter-problem.vcf -i 'POS!=25500' --phase m | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENSMUST00000121418 && /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENSMUST00000121418.fa -g ENSMUST00000121418.gff filter-problem.vcf -i 'POS!=25496' --phase m | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENSMUST00000121418 && /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENSMUST00000121418.fa -g ENSMUST00000121418.gff filter-problem.vcf -i 'POS!=25105' --phase m | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/EDUMMY0002/EDUMMY0002.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/EDUMMY0002/EDUMMY0002.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/EDUMMY0002/boundaries.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000269081/ENST00000269081.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000269081/ENST00000269081.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000269081/stop-gained-not-inframe-insertion.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000271583/ENST00000271583.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000271583/ENST00000271583.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000271583/splice-acceptor.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000294661/ENST00000294661.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000294661/ENST00000294661.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000294661/non-coding-boundary.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000294661/ENST00000294661.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000294661/ENST00000294661.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000294661/non-coding-boundary.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000256452/ENST00000256452.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000256452/ENST00000256452.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000256452/intron.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENSCAFT00000047742/ENSCAFT00000047742.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENSCAFT00000047742/ENSCAFT00000047742.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENSCAFT00000047742/test.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000573035-bt2212/ENST00000573035-bt2212.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000573035-bt2212/ENST00000573035-bt2212.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000573035-bt2212/complex-event.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000227471/ENST00000227471.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000227471/ENST00000227471.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000227471/insert-splice-vs-frameshift.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000373833/ENST00000373833.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000373833/ENST00000373833.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000373833/boundary-insertion.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000373833/ENST00000373833.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000373833/ENST00000373833.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000373833/boundary-insertion.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000318249/ENST00000318249.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000318249/ENST00000318249.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000318249/start-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000318249/ENST00000318249.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000318249/ENST00000318249.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000318249/start-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000624631/ENST00000624631.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000624631/ENST00000624631.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000624631/ambiguous.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000410009 && /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -b -f ENST00000410009.fa -g ENST00000410009.gff frameshift.vcf | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000410009 && /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -B 5 -f ENST00000410009.fa -g ENST00000410009.gff frameshift.vcf | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000410009 && /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -lb -f ENST00000410009.fa -g ENST00000410009.gff frameshift.vcf | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000410009/ENST00000410009.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000410009/ENST00000410009.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000410009/frameshift.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000360372/ENST00000360372.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000360372/ENST00000360372.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000360372/mnp.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000409523/ENST00000409523.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000409523/ENST00000409523.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000409523/long-overlapping-del.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000218032/ENST00000218032.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000218032/ENST00000218032.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000218032/start-lost-del.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000218032/ENST00000218032.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000218032/ENST00000218032.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000218032/start-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000218032/ENST00000218032.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000218032/ENST00000218032.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000218032/start-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000423372/ENST00000423372.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000423372/ENST00000423372.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000423372/snps.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000423372/ENST00000423372.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000423372/ENST00000423372.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000423372/snps.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000423372/ENST00000423372.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000423372/ENST00000423372.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000423372/insert3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000423372/ENST00000423372.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000423372/ENST00000423372.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000423372/insert3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000545279/ENST00000545279.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000545279/ENST00000545279.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000545279/splice-region-insert.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000420670/ENST00000420670.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000420670/ENST00000420670.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000420670/start-stop-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000420670/ENST00000420670.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000420670/ENST00000420670.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000420670/segfault.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000381157/ENST00000381157.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000381157/ENST00000381157.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000381157/haploid-diploid.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%REF\t%ALT\t%TBCSQ\n]\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000520868/ENST00000520868.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000520868/ENST00000520868.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000520868/long-deletion.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000573314/ENST00000573314.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000573314/ENST00000573314.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000573314/incorrect-insertion-overlap.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000573314/ENST00000573314.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000573314/ENST00000573314.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000573314/incorrect-insertion-overlap.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000368801/ENST00000368801.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000368801/ENST00000368801.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000368801/compound-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000448695/ENST00000448695.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000448695/ENST00000448695.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000448695/syn-and-splice-reg.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000378322/ENST00000378322.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000378322/ENST00000378322.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000378322/end-overlap-tscript.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000378322/ENST00000378322.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000378322/ENST00000378322.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000378322/end-overlap-tscript.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000329454/ENST00000329454.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000329454/ENST00000329454.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000329454/boundary-deletion.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000329454/ENST00000329454.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000329454/ENST00000329454.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000329454/boundary-deletion.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENSG00000173376/ENSG00000173376.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENSG00000173376/ENSG00000173376.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENSG00000173376/synon.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000413103/ENST00000413103.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000413103/ENST00000413103.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000413103/long-deletion.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000536784/ENST00000536784.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000536784/ENST00000536784.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000536784/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000536784/ENST00000536784.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000536784/ENST00000536784.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000536784/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000000000 && /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -p a -f ENST00000000000.fa -g ENST00000000000.gff upstream-stop.vcf  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%REF\t%ALT\t%SAMPLE\t%GT\t%TBCSQ\n]' | ../sort-csq -q
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000263103-INS/ENST00000263103-INS.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000263103-INS/ENST00000263103-INS.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000263103-INS/insertions.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_roh:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools roh /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/roh.1.vcf.gz -Or -G30 --AF-dflt 0.4| grep -v ^#
.. ok

test_roh:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools roh /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/roh.1.vcf.gz -Or -G30 --AF-file /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/roh.1.tab.gz| grep -v ^#
.. ok

test_roh:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools roh /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/roh.1.vcf.gz -Or -G30 --AF-file /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/roh.1.tab.gz --ignore-homref| grep -v ^#
.. ok

test_roh:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools roh /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/roh.1.vcf.gz     -G30 --AF-dflt 0.4 -r 1:100174876-100318245| grep -v ^#
.. ok

test_roh:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools roh /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/roh.1.vcf.gz     -G30 --AF-dflt 0.4 -r 1:100174876-100318245 --ignore-homref| grep -v ^#
.. ok

test_roh:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools roh /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/roh.1.vcf.gz     -G30 --AF-dflt 0.4 -r 1:100174876-100318245 --ignore-homref --include-noalt| grep -v ^#
.. ok

test_roh:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools roh /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/roh.1.vcf.gz     -G30 --AF-dflt 0.4 -r 1:100174876-100318245 --include-noalt| grep -v ^#
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck --keep-refs /tmp/teAXFodfS9/gtcheck.gvcf.a.vcf.gz -g /tmp/teAXFodfS9/gtcheck.gvcf.b.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck --keep-refs /tmp/teAXFodfS9/gtcheck.gvcf.b.vcf.gz -g /tmp/teAXFodfS9/gtcheck.gvcf.a.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck  /tmp/teAXFodfS9/gtcheck.gvcf.a.vcf.gz -g /tmp/teAXFodfS9/gtcheck.gvcf.b.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck  /tmp/teAXFodfS9/gtcheck.gvcf.b.vcf.gz -g /tmp/teAXFodfS9/gtcheck.gvcf.a.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 --no-HWE-prob /tmp/teAXFodfS9/gtcheck.1.vcf.gz -g /tmp/teAXFodfS9/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 /tmp/teAXFodfS9/gtcheck.1.vcf.gz -g /tmp/teAXFodfS9/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -u GT,GT /tmp/teAXFodfS9/gtcheck.1.vcf.gz -g /tmp/teAXFodfS9/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -u GT,PL /tmp/teAXFodfS9/gtcheck.1.vcf.gz -g /tmp/teAXFodfS9/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -u PL,GT /tmp/teAXFodfS9/gtcheck.1.vcf.gz -g /tmp/teAXFodfS9/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -u PL,PL /tmp/teAXFodfS9/gtcheck.1.vcf.gz -g /tmp/teAXFodfS9/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -p s1,s1 /tmp/teAXFodfS9/gtcheck.1.vcf.gz -g /tmp/teAXFodfS9/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 /tmp/teAXFodfS9/gtcheck.2.vcf.gz -g /tmp/teAXFodfS9/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0  /tmp/teAXFodfS9/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -p B,A,C,A,C,B,D,A,D,B,D,C,E,A,E,B,E,C,E,D /tmp/teAXFodfS9/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -P /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gtcheck.3.pairs /tmp/teAXFodfS9/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -u PL /tmp/teAXFodfS9/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 --n-matches 4 /tmp/teAXFodfS9/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO  | sort
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -s qry:E,D,C /tmp/teAXFodfS9/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -s qry:E,D,C -u PL /tmp/teAXFodfS9/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -s qry:B -s gt:D /tmp/teAXFodfS9/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -s qry:B -s gt:D -u PL /tmp/teAXFodfS9/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -s qry:B -s gt:D,C /tmp/teAXFodfS9/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -p B,C,B,D /tmp/teAXFodfS9/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -u GT,GT -H /tmp/teAXFodfS9/gtcheck.1.vcf.gz -g /tmp/teAXFodfS9/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -u GT,PL -H /tmp/teAXFodfS9/gtcheck.1.vcf.gz -g /tmp/teAXFodfS9/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -u PL,GT -H /tmp/teAXFodfS9/gtcheck.1.vcf.gz -g /tmp/teAXFodfS9/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -u PL,PL -H /tmp/teAXFodfS9/gtcheck.1.vcf.gz -g /tmp/teAXFodfS9/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -P /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gtcheck.4.pairs --distinctive-sites 3 /tmp/teAXFodfS9/gtcheck.4.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -P /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gtcheck.4.pairs --distinctive-sites 3,1 /tmp/teAXFodfS9/gtcheck.4.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -u GT -e 30 /tmp/teAXFodfS9/gtcheck.1.vcf.gz -g /tmp/teAXFodfS9/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -u GT -e 30 -p s1,s1 /tmp/teAXFodfS9/gtcheck.1.vcf.gz -g /tmp/teAXFodfS9/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -u GT -e 300 /tmp/teAXFodfS9/gtcheck.1.vcf.gz -g /tmp/teAXFodfS9/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -u PL -e 30 /tmp/teAXFodfS9/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck  /tmp/teAXFodfS9/gtcheck.ntop.vcf.gz -g /tmp/teAXFodfS9/gtcheck.ntop.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck --n-matches 2 /tmp/teAXFodfS9/gtcheck.ntop.vcf.gz -g /tmp/teAXFodfS9/gtcheck.ntop.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck  /tmp/teAXFodfS9/gtcheck.5.vcf.gz -g /tmp/teAXFodfS9/gtcheck.5.gts.vcf.gz | grep -v ^# | grep -v Time
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -p A,B,B,C /tmp/teAXFodfS9/gtcheck.6.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -t 11:33 -p A,D,A,E,D,E -u GT -e 10 /tmp/teAXFodfS9/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +vcf2table /tmp/teAXFodfS9/merge.4.b.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +vcf2table /tmp/teAXFodfS9/merge.4.b.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +vcf2table /tmp/teAXFodfS9/split-vep.2.vcf.gz  -- --hide 'INFO,URL' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +vcf2table /tmp/teAXFodfS9/split-vep.2.bcf  -- --hide 'INFO,URL' | grep -v ^##bcftools_
.. ok


Number of tests:
    total   .. 2483
    passed  .. 2483
    failed  .. 0

+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: bcftools-1.24-2.fc46.ppc64le
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.PkGBbV
+ umask 022
+ cd /builddir/build/BUILD/bcftools-1.24-build
+ cd bcftools-1.24
+ DOCDIR=/builddir/build/BUILD/bcftools-1.24-build/BUILDROOT/usr/share/doc/bcftools
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT/usr/share/doc/bcftools
+ cp -pr /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/AUTHORS /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT/usr/share/doc/bcftools
+ cp -pr /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/NEWS /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT/usr/share/doc/bcftools
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.xFymT1
+ umask 022
+ cd /builddir/build/BUILD/bcftools-1.24-build
+ cd bcftools-1.24
+ LICENSEDIR=/builddir/build/BUILD/bcftools-1.24-build/BUILDROOT/usr/share/licenses/bcftools
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT/usr/share/licenses/bcftools
+ cp -pr /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/LICENSE /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT/usr/share/licenses/bcftools
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: bcftools = 1.24-2.fc46 bcftools(ppc-64) = 1.24-2.fc46
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/perl /usr/bin/python3 ld64.so.2()(64bit) ld64.so.2(GLIBC_2.23)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgsl.so.28()(64bit) libgslcblas.so.0()(64bit) libhts.so.3()(64bit) libhts.so.3(HTSLIB_1.0)(64bit) libhts.so.3(HTSLIB_1.1)(64bit) libhts.so.3(HTSLIB_1.10)(64bit) libhts.so.3(HTSLIB_1.13)(64bit) libhts.so.3(HTSLIB_1.16)(64bit) libhts.so.3(HTSLIB_1.17)(64bit) libhts.so.3(HTSLIB_1.2.1)(64bit) libhts.so.3(HTSLIB_1.22)(64bit) libhts.so.3(HTSLIB_1.24)(64bit) libhts.so.3(HTSLIB_1.3)(64bit) libhts.so.3(HTSLIB_1.4)(64bit) libhts.so.3(HTSLIB_1.5)(64bit) libhts.so.3(HTSLIB_1.6)(64bit) libhts.so.3(HTSLIB_1.7)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.23)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.32)(64bit) libm.so.6(GLIBC_2.43)(64bit) libperl.so.5.44()(64bit) rtld(GNU_HASH)
Conflicts: samtools < 1.0
Processing files: bcftools-debugsource-1.24-2.fc46.ppc64le
Provides: bcftools-debugsource = 1.24-2.fc46 bcftools-debugsource(ppc-64) = 1.24-2.fc46
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: bcftools-debuginfo-1.24-2.fc46.ppc64le
Provides: bcftools-debuginfo = 1.24-2.fc46 bcftools-debuginfo(ppc-64) = 1.24-2.fc46 debuginfo(build-id) = 02173f559650a25aee24fd648e721d2c21b9bd3d debuginfo(build-id) = 02b955e5113e6f6f76d71f9e0c8d8cdbaded4f4e debuginfo(build-id) = 08809188a6752d14361e5c5c20ab4f5110839779 debuginfo(build-id) = 0dcf9c6dab1b491cd2a901a58b927c3b3783bbbe debuginfo(build-id) = 0f717eccb9923daefd504c74c23000dc2aea49fa debuginfo(build-id) = 16f3f3e1d4d8c0bbdeb02a4e73650e15578eb399 debuginfo(build-id) = 180832486f7adaff882c4fae7e9d5a38233d01c6 debuginfo(build-id) = 248cb0a74e0eb2732c6b480bada2dcdf5125372f debuginfo(build-id) = 31093d48e642de9f0ee02b7e779b9ff3e287e86f debuginfo(build-id) = 32e429dd5998057cb7795789fc6b5925b628a41d debuginfo(build-id) = 361ef9dc12f0bd4df0bfdec7cfb4bbd949bdca89 debuginfo(build-id) = 3fe84c4ab38c3d9b94d233895a1d434a075f3d07 debuginfo(build-id) = 435a946dc211091bf26b687338b86ba923c6ba49 debuginfo(build-id) = 457fb0161aa5bdb803dc4f2f67ed72351b13b7d9 debuginfo(build-id) = 5c49d3d4c9cce40b44d95b569ff97371efaeffe3 debuginfo(build-id) = 5e4f122486470044c93f55a1b9508fffaabb1767 debuginfo(build-id) = 5edfda432d30d58bd02cbc84e1fd901ec1ce4b34 debuginfo(build-id) = 60e1b59eef8b99da265bb2719330ca2b9951c490 debuginfo(build-id) = 61228df51562f23e6b26bde88fc264785a0c3962 debuginfo(build-id) = 6a4d4e6d78b7136ca624820655f4b844fe5b67be debuginfo(build-id) = 6a7d8cbf1dfe579d23dab7216819d99613aa2923 debuginfo(build-id) = 6e17ef8eefa58dad78cae711772ddec63ba6220e debuginfo(build-id) = 6fb6c89cccd5d119bf93ed24ac2ad0f60762b8bf debuginfo(build-id) = 71f2017bffb0af7024b84b28bebef4715d1a84c9 debuginfo(build-id) = 7211f1f5f553abf1eae4edb42ad07ca3e5405a30 debuginfo(build-id) = 88b15afef7a0785ce9f3248f5ea9cc66d5799d06 debuginfo(build-id) = 8e3e65f2beb959334cc2d1afee2fea6604cda44b debuginfo(build-id) = 905dc00e4f87443b45dfa36d05d57056ef5aa727 debuginfo(build-id) = 95f76f157d770224f17eaa13d7f23f00071bcfb3 debuginfo(build-id) = 9d6822d974c8431912bcc2da603f4af8fe3c6ca8 debuginfo(build-id) = b656b93a647e9b25b4b48b8b40ca3b77654fc777 debuginfo(build-id) = bbfad61df2f298a6b349bffde7163f7626879938 debuginfo(build-id) = bc646b9c5531e0abca8af55f7377961ba7ed3357 debuginfo(build-id) = c568245c6bafaacfc11b047f79bc9dd3ebf2cfc3 debuginfo(build-id) = d1c6225dc7cf8222008053b7cbea630b95738205 debuginfo(build-id) = d6a127ab8a845f5817a0be4230b4c763e279db11 debuginfo(build-id) = def1818d7d041c5348c18c07db879f2e7fe385d7 debuginfo(build-id) = e406966a766b952db6c2c23f9c3d62e2825e692e debuginfo(build-id) = e576b33513e001d3812a2bb152fcbfcf67a45794 debuginfo(build-id) = e5a297b69a0b0bd60ef1c57d20c7fef0b28cf840 debuginfo(build-id) = ee3a6995bf6f8bb86bfa7be344a612affd55f003 debuginfo(build-id) = f5b70313388b7a7d7043295c61d8af2b0b2cbde2
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: bcftools-debugsource(ppc-64) = 1.24-2.fc46
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT
Wrote: /builddir/build/RPMS/bcftools-1.24-2.fc46.ppc64le.rpm
Wrote: /builddir/build/RPMS/bcftools-debugsource-1.24-2.fc46.ppc64le.rpm
Wrote: /builddir/build/RPMS/bcftools-debuginfo-1.24-2.fc46.ppc64le.rpm
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.zo3aM9
+ umask 022
+ cd /builddir/build/BUILD/bcftools-1.24-build
+ test -d /builddir/build/BUILD/bcftools-1.24-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/bcftools-1.24-build
+ rm -rf /builddir/build/BUILD/bcftools-1.24-build
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild bcftools-1.24-2.fc46.src.rpm
Finish: build phase for bcftools-1.24-2.fc46.src.rpm
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-ppc64le-1790842179.854768/root/var/log/dnf5.log
INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz
/bin/tar: Removing leading `/' from member names
INFO: Done(/var/lib/copr-rpmbuild/results/bcftools-1.24-2.fc46.src.rpm) Config(child) 2 minutes 8 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool
Package info:
{
    "packages": [
        {
            "name": "bcftools",
            "epoch": null,
            "version": "1.24",
            "release": "2.fc46",
            "arch": "src"
        },
        {
            "name": "bcftools",
            "epoch": null,
            "version": "1.24",
            "release": "2.fc46",
            "arch": "ppc64le"
        },
        {
            "name": "bcftools-debugsource",
            "epoch": null,
            "version": "1.24",
            "release": "2.fc46",
            "arch": "ppc64le"
        },
        {
            "name": "bcftools-debuginfo",
            "epoch": null,
            "version": "1.24",
            "release": "2.fc46",
            "arch": "ppc64le"
        }
    ]
}
RPMResults finished