Warning: Permanently added '54.164.116.159' (ED25519) to the list of known hosts.

You can reproduce this build on your computer by running:

  sudo dnf install copr-rpmbuild
  /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/11058254-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64


Version: 1.10
PID: 11903
Logging PID: 11905
Task:
{'allow_user_ssh': False,
 'appstream': False,
 'background': True,
 'build_id': 11058254,
 'buildroot_pkgs': ['fedora-clang-default-cc'],
 'chroot': 'fedora-rawhide-x86_64',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': 'b874f5dfc7e091bd970c31ae0792ef78c3f9660c',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/@fedora-llvm-team/clang-monthly-fedora-rebuild/bcftools',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'bcftools',
 'package_version': '1.24-2',
 'project_dirname': 'clang-monthly-fedora-rebuild',
 'project_name': 'clang-monthly-fedora-rebuild',
 'project_owner': '@fedora-llvm-team',
 'repo_priority': None,
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/@fedora-llvm-team/clang-monthly-fedora-rebuild/fedora-rawhide-x86_64/',
            'id': 'copr_base',
            'name': 'Copr repository',
            'priority': None,
            'repo_gpgcheck': False},
           {'baseurl': 'https://download.copr.fedorainfracloud.org/results/tstellar/fedora-clang-default-cc/fedora-rawhide-x86_64/',
            'id': 'copr_tstellar_fedora_clang_default_cc',
            'name': 'Additional repo copr_tstellar_fedora_clang_default_cc',
            'repo_gpgcheck': False},
           {'baseurl': 'https://download.copr.fedorainfracloud.org/results/@fedora-llvm-team/llvm-snapshots-big-merge-20260928/fedora-rawhide-x86_64/',
            'id': 'copr_fedora_llvm_team_llvm_snapshots_big_merge_20260928',
            'module_hotfixes': True,
            'name': 'Additional repo copr_fedora_llvm_team_llvm_snapshots_big_merge_20260928',
            'repo_gpgcheck': False}],
 'sandbox': '@fedora-llvm-team/clang-monthly-fedora-rebuild--kkleine',
 'source_json': {},
 'source_type': None,
 'ssh_public_keys': None,
 'storage': 0,
 'submitter': 'kkleine',
 'tags': [],
 'task_id': '11058254-fedora-rawhide-x86_64',
 'timeout': 90000,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': ['toolchain_clang', 'clang_lto']}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/@fedora-llvm-team/clang-monthly-fedora-rebuild/bcftools /var/lib/copr-rpmbuild/workspace/workdir-_xbsrch0/bcftools --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/@fedora-llvm-team/clang-monthly-fedora-rebuild/bcftools', '/var/lib/copr-rpmbuild/workspace/workdir-_xbsrch0/bcftools', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-_xbsrch0/bcftools'...

Running: git checkout b874f5dfc7e091bd970c31ae0792ef78c3f9660c --

cmd: ['git', 'checkout', 'b874f5dfc7e091bd970c31ae0792ef78c3f9660c', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-_xbsrch0/bcftools
rc: 0
stdout: 
stderr: Note: switching to 'b874f5dfc7e091bd970c31ae0792ef78c3f9660c'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at b874f5d automatic import of bcftools

Running: dist-git-client sources

cmd: ['dist-git-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-_xbsrch0/bcftools
rc: 0
stdout: 
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading bcftools-1.24.tar.bz2
INFO: Reading stdout from command: curl --help all
INFO: Calling: curl -H Pragma: -H 'Accept-Encoding: identity' -o bcftools-1.24.tar.bz2 --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/@fedora-llvm-team/clang-monthly-fedora-rebuild/bcftools/bcftools-1.24.tar.bz2/md5/f2e02ae16e0a9a2f8a3e2408c6bcee7c/bcftools-1.24.tar.bz2
  % Total    % Received % Xferd  Average Speed  Time    Time    Time   Current
                                 Dload  Upload  Total   Spent   Left   Speed
100  7.88M 100  7.88M   0      0 13.10M      0                              0
INFO: Reading stdout from command: md5sum bcftools-1.24.tar.bz2

tail: /var/lib/copr-rpmbuild/main.log: file truncated
Running (timeout=90000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-_xbsrch0/bcftools/bcftools.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-_xbsrch0/bcftools --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1790841583.496476 -r /var/lib/copr-rpmbuild/results/configs/child.cfg --without toolchain_clang --without clang_lto
INFO: mock.py version 6.8 starting (python version = 3.14.5, NVR = mock-6.8-1.fc44), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-_xbsrch0/bcftools/bcftools.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-_xbsrch0/bcftools --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1790841583.496476 -r /var/lib/copr-rpmbuild/results/configs/child.cfg --without toolchain_clang --without clang_lto
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-_xbsrch0/bcftools/bcftools.spec)  Config(fedora-rawhide-x86_64)
Start: clean chroot
Finish: clean chroot
Mock Version: 6.8
INFO: Mock Version: 6.8
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1790841583.496476/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Guessed host environment type: unknown
INFO: Using container image: registry.fedoraproject.org/fedora:rawhide
INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide
INFO: Tagging container image as mock-bootstrap-e4a208c3-6f73-4175-9e66-5bb77e3cf3db
INFO: Checking that f302ae09c5da88a921a2279f1716b78a40453a136311e1bc90339822f97dd102 image matches host's architecture
INFO: Copy content of container f302ae09c5da88a921a2279f1716b78a40453a136311e1bc90339822f97dd102 to /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1790841583.496476/root
INFO: mounting f302ae09c5da88a921a2279f1716b78a40453a136311e1bc90339822f97dd102 with podman image mount
INFO: image f302ae09c5da88a921a2279f1716b78a40453a136311e1bc90339822f97dd102 as /var/lib/containers/storage/overlay/1d1ad910df2ed4d61ba1e22d635a40fe26ed19598464fab648317385c585d8e1/merged
INFO: umounting image f302ae09c5da88a921a2279f1716b78a40453a136311e1bc90339822f97dd102 (/var/lib/containers/storage/overlay/1d1ad910df2ed4d61ba1e22d635a40fe26ed19598464fab648317385c585d8e1/merged) with podman image umount
INFO: Removing image mock-bootstrap-e4a208c3-6f73-4175-9e66-5bb77e3cf3db
INFO: Package manager dnf5 detected and used (fallback)
INFO: Not updating bootstrap chroot, bootstrap_image_ready=True
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1790841583.496476/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf5 detected and used (direct choice)
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-6.1.0-1.fc46.x86_64
  rpm-sequoia-1.10.3-1.fc46.x86_64
  dnf5-5.4.6.0-1.fc46.x86_64
  dnf5-plugins-5.4.6.0-1.fc46.x86_64
Start: installing minimal buildroot with dnf5
Updating and loading repositories:
 Additional repo copr_tstellar_fedora_c 100% |  13.1 KiB/s |   2.5 KiB |  00m00s
 Copr repository                        100% |   8.2 MiB/s |   3.4 MiB |  00m00s
 Additional repo copr_fedora_llvm_team_ 100% |  49.2 KiB/s |  27.5 KiB |  00m01s
 fedora                                 100% |  23.7 MiB/s |  22.0 MiB |  00m01s
Repositories loaded.
Package                            Arch   Version                      Repository      Size
Installing group/module packages:
 bash                              x86_64 0:5.3.15-2.fc46              copr_base    8.5 MiB
 bzip2                             x86_64 0:1.0.8-24.fc46              copr_base   90.6 KiB
 coreutils                         x86_64 0:9.12-1.fc46                fedora       6.3 MiB
 cpio                              x86_64 0:2.15-10.fc46               copr_base    1.1 MiB
 diffutils                         x86_64 0:3.12-6.fc45                fedora       1.6 MiB
 fedora-release-common             noarch 0:46-0.1                     fedora       4.6 KiB
 findutils                         x86_64 1:4.11.0-2.fc46              copr_base    2.0 MiB
 gawk                              x86_64 0:5.4.1-1.fc46               copr_base    2.2 MiB
 glibc-minimal-langpack            x86_64 0:2.44.9000-4.fc46           fedora       0.0   B
 grep                              x86_64 0:3.12-4.fc45                fedora       1.0 MiB
 gzip                              x86_64 0:1.14-4.fc46                copr_base  409.6 KiB
 info                              x86_64 0:7.3-3.fc46                 copr_base  395.6 KiB
 patch                             x86_64 0:2.8-6.fc46                 fedora     226.6 KiB
 redhat-rpm-config                 noarch 0:345-4.fc46                 fedora     184.2 KiB
 rpm-build                         x86_64 0:6.1.0-1.fc46               fedora     312.1 KiB
 sed                               x86_64 0:4.10-2.fc45                fedora     866.5 KiB
 shadow-utils                      x86_64 2:4.20.0-1.fc46              copr_base    4.0 MiB
 tar                               x86_64 2:1.35-9.fc45                fedora       3.0 MiB
 unzip                             x86_64 0:6.0-71.fc45                fedora     441.8 KiB
 util-linux                        x86_64 0:2.42.4-2.fc46              fedora       3.7 MiB
 which                             x86_64 0:2.25-2.fc46                copr_base   79.0 KiB
 xz                                x86_64 1:5.8.4-1.fc46               fedora       1.4 MiB
Installing dependencies:
 R-srpm-macros                     noarch 0:1.3.7-3.fc45               fedora       3.5 KiB
 add-determinism                   x86_64 0:0.7.3-3.fc45               fedora       2.2 MiB
 alternatives                      x86_64 0:1.33-6.fc46                copr_base   61.9 KiB
 ansible-srpm-macros               noarch 0:1-22.fc45                  fedora      35.7 KiB
 audit-libs                        x86_64 0:4.2.1-2.fc45               fedora     390.5 KiB
 binutils                          x86_64 0:2.47.50-12.fc46            fedora      24.4 MiB
 build-reproducibility-srpm-macros noarch 0:0.7.3-3.fc45               fedora       1.2 KiB
 bzip2-libs                        x86_64 0:1.0.8-24.fc46              copr_base   92.3 KiB
 ca-certificates                   noarch 0:2026.2.90_v9.0.317-1.fc46  fedora       2.6 MiB
 cmake-srpm-macros                 noarch 0:4.3.0-5.fc45               fedora     524.0   B
 coreutils-common                  x86_64 0:9.12-1.fc46                fedora      11.5 MiB
 crypto-policies                   noarch 0:20260713-2.gitc42da77.fc45 fedora     134.3 KiB
 curl                              x86_64 0:8.23.0~rc2-1.fc46          fedora     485.6 KiB
 cyrus-sasl-lib                    x86_64 0:2.1.28-37.fc45             fedora       2.3 MiB
 debugedit                         x86_64 0:5.3-3.fc46                 copr_base  220.3 KiB
 dwz                               x86_64 0:0.17-3.fc45                fedora     291.1 KiB
 ed                                x86_64 0:1.22.6-1.fc46              copr_base  166.9 KiB
 efi-srpm-macros                   noarch 0:6-9.fc45                   fedora      40.3 KiB
 elfutils                          x86_64 0:0.196-1.fc46               fedora       3.2 MiB
 elfutils-debuginfod-client        x86_64 0:0.196-1.fc46               fedora      79.9 KiB
 elfutils-libelf                   x86_64 0:0.196-1.fc46               fedora       1.4 MiB
 elfutils-libs                     x86_64 0:0.196-1.fc46               fedora     719.6 KiB
 erlang-srpm-macros                noarch 0:0.3.11-2.fc45              fedora       1.9 KiB
 fedora-gpg-keys                   noarch 0:46-0.3                     fedora     130.3 KiB
 fedora-release                    noarch 0:46-0.1                     fedora       0.0   B
 fedora-release-identity-basic     noarch 0:46-0.1                     fedora     664.0   B
 fedora-repos                      noarch 0:46-0.3                     fedora       4.9 KiB
 fedora-repos-rawhide              noarch 0:46-0.3                     fedora       2.2 KiB
 file                              x86_64 0:5.48-3.fc46                fedora     101.9 KiB
 file-libs                         x86_64 0:5.48-3.fc46                fedora      12.3 MiB
 filesystem                        x86_64 0:3.18-59.fc45               fedora     112.0   B
 filesystem-srpm-macros            noarch 0:3.18-59.fc45               fedora      38.2 KiB
 fips-provider                     x86_64 0:1.5.3-1.fc46               fedora       4.8 MiB
 fonts-srpm-macros                 noarch 1:5.0.0-4.fc45               fedora      55.8 KiB
 forge-srpm-macros                 noarch 0:0.4.0-5.fc45               fedora      38.9 KiB
 fpc-srpm-macros                   noarch 0:1.3-17.fc45                fedora     144.0   B
 gap-srpm-macros                   noarch 0:2-3.fc45                   fedora       2.1 KiB
 gdb-minimal                       x86_64 0:17.2-6.fc46                fedora      14.2 MiB
 gdbm-libs                         x86_64 1:1.23-12.fc46               copr_base  133.7 KiB
 ghc-srpm-macros                   noarch 0:1.10-2.fc45                fedora     792.0   B
 glibc                             x86_64 0:2.44.9000-4.fc46           fedora       7.2 MiB
 glibc-common                      x86_64 0:2.44.9000-4.fc46           fedora       1.0 MiB
 glibc-gconv-extra                 x86_64 0:2.44.9000-4.fc46           fedora       7.7 MiB
 gmp                               x86_64 1:6.3.0-6.fc45               fedora     815.2 KiB
 gnat-srpm-macros                  noarch 0:7-3.fc45                   fedora       1.0 KiB
 gnome-srpm-macros                 noarch 0:1.0-2.fc45                 fedora       3.5 KiB
 gnulib-l10n                       noarch 0:20241231-4.fc46            copr_base  655.0 KiB
 gnupg2                            x86_64 0:2.4.9-18.fc46              copr_base    6.6 MiB
 gnupg2-dirmngr                    x86_64 0:2.4.9-18.fc46              copr_base  680.0 KiB
 gnupg2-gpg-agent                  x86_64 0:2.4.9-18.fc46              copr_base  729.9 KiB
 gnupg2-gpgconf                    x86_64 0:2.4.9-18.fc46              copr_base  266.9 KiB
 gnupg2-keyboxd                    x86_64 0:2.4.9-18.fc46              copr_base  222.2 KiB
 gnupg2-verify                     x86_64 0:2.4.9-18.fc46              copr_base  399.2 KiB
 gnutls                            x86_64 0:3.8.13-5.fc46              fedora       3.8 MiB
 go-srpm-macros                    noarch 0:3.8.0-3.fc45               fedora      61.9 KiB
 gpgverify                         noarch 0:2.2-5.fc45                 fedora       8.7 KiB
 ima-evm-utils-libs                x86_64 0:1.6.2-12.fc46              copr_base   56.4 KiB
 jansson                           x86_64 0:2.14-5.fc46                copr_base  101.1 KiB
 java-srpm-macros                  noarch 0:1-9.fc45                   fedora     870.0   B
 json-c                            x86_64 0:0.18-9.fc46                copr_base   86.4 KiB
 kernel-srpm-macros                noarch 0:1.0-30.fc45                fedora       1.9 KiB
 keyutils-libs                     x86_64 0:1.6.3-8.fc46               copr_base   50.0 KiB
 krb5-libs                         x86_64 0:1.22.2-9.fc45              fedora       2.4 MiB
 libacl                            x86_64 0:2.4.0-2.fc45               fedora      43.9 KiB
 libarchive                        x86_64 0:3.8.9-2.fc46               fedora       1.0 MiB
 libassuan                         x86_64 0:2.5.7-6.fc46               copr_base  168.0 KiB
 libattr                           x86_64 0:2.6.0-2.fc46               copr_base   24.1 KiB
 libblkid                          x86_64 0:2.42.4-2.fc46              fedora     282.3 KiB
 libbrotli                         x86_64 0:1.2.0-6.fc46               copr_base  876.8 KiB
 libcap                            x86_64 0:2.78-2.fc45                fedora     208.2 KiB
 libcap-ng                         x86_64 0:0.9.6-1.fc46               fedora      68.8 KiB
 libcbor                           x86_64 0:0.14.0-3.fc45              fedora      83.5 KiB
 libcom_err                        x86_64 0:1.47.4-2.fc46              copr_base   62.8 KiB
 libcurl                           x86_64 0:8.23.0~rc2-1.fc46          fedora       1.1 MiB
 libeconf                          x86_64 0:0.7.9-4.fc46               copr_base   69.0 KiB
 libevent                          x86_64 0:2.1.13-1.fc46              fedora     980.7 KiB
 libfdisk                          x86_64 0:2.42.4-2.fc46              fedora     392.3 KiB
 libffi                            x86_64 0:3.8.0-1.fc46               fedora      95.5 KiB
 libfido2                          x86_64 0:1.17.0-5.fc46              copr_base  257.4 KiB
 libfsverity                       x86_64 0:1.7-4.fc45                 fedora      24.4 KiB
 libgcc                            x86_64 0:16.2.1-2.fc46.1            fedora     270.7 KiB
 libgcrypt                         x86_64 0:1.12.4-1.fc46              fedora       1.7 MiB
 libgomp                           x86_64 0:16.2.1-2.fc46.1            fedora     577.5 KiB
 libgpg-error                      x86_64 0:1.61-2.fc46                copr_base  966.4 KiB
 libidn2                           x86_64 0:2.3.8-4.fc46               copr_base  556.3 KiB
 libksba                           x86_64 0:1.8.1-1.fc46               copr_base  428.9 KiB
 liblastlog2                       x86_64 0:2.42.4-2.fc46              fedora      37.6 KiB
 libmount                          x86_64 0:2.42.4-2.fc46              fedora     408.9 KiB
 libnghttp2                        x86_64 0:1.69.0-6.fc46              fedora     166.1 KiB
 libnghttp3                        x86_64 0:1.18.0-1.fc46              copr_base  183.7 KiB
 libpfm                            x86_64 0:4.13.0-23.fc45             fedora       1.7 MiB
 libpkgconf                        x86_64 0:2.5.1-2.fc46               copr_base   85.8 KiB
 libpsl                            x86_64 0:0.23.3-1.fc46              fedora      80.4 KiB
 libselinux                        x86_64 0:3.11-5.fc46                fedora     205.2 KiB
 libselinux-utils                  x86_64 0:3.11-5.fc46                fedora     306.0 KiB
 libsemanage                       x86_64 0:3.11-4.fc46                fedora     320.6 KiB
 libsepol                          x86_64 0:3.11-2.fc46                copr_base  944.4 KiB
 libsmartcols                      x86_64 0:2.42.4-2.fc46              fedora     188.5 KiB
 libssh                            x86_64 0:0.12.2-1.fc45              fedora     725.7 KiB
 libssh-config                     noarch 0:0.12.2-1.fc45              fedora     277.0   B
 libstdc++                         x86_64 0:16.2.1-2.fc46.1            fedora       3.1 MiB
 libtasn1                          x86_64 0:4.21.0-2.fc46              copr_base  188.6 KiB
 libtool-ltdl                      x86_64 0:2.6.2-1.fc46               fedora      70.0 KiB
 libunistring                      x86_64 0:1.1-12.fc46                copr_base    1.7 MiB
 libusb1                           x86_64 0:1.0.30-2.fc45              fedora     180.1 KiB
 libuuid                           x86_64 0:2.42.4-2.fc46              fedora      37.2 KiB
 libverto                          x86_64 0:0.3.2-13.fc45              fedora      25.3 KiB
 libxcrypt                         x86_64 0:4.5.2-4.fc45               fedora     293.2 KiB
 libxml2                           x86_64 0:2.15.4-1.fc46              fedora       1.7 MiB
 libzstd                           x86_64 0:1.5.7-6.fc46               copr_base  963.2 KiB
 linkdupes                         x86_64 0:0.7.3-3.fc45               fedora     782.1 KiB
 lua-libs                          x86_64 0:5.5.1-2.fc46               fedora     298.0 KiB
 lua-srpm-macros                   noarch 0:1-18.fc45                  fedora       1.3 KiB
 lz4-libs                          x86_64 0:1.10.0-5.fc46              copr_base  173.1 KiB
 meson-srpm-macros                 noarch 0:1.12.1-2.fc46              fedora       1.7 KiB
 mpfr                              x86_64 0:4.2.2-4.fc45               fedora     849.2 KiB
 ncurses-base                      noarch 0:6.6-3.fc46                 copr_base  329.7 KiB
 ncurses-libs                      x86_64 0:6.6-3.fc46                 copr_base  959.0 KiB
 nettle                            x86_64 0:4.0-5.fc45                 fedora     801.9 KiB
 ngtcp2                            x86_64 0:1.22.1-3.fc45              fedora     334.3 KiB
 ngtcp2-crypto-ossl                x86_64 0:1.22.1-3.fc45              fedora      51.6 KiB
 npth                              x86_64 0:1.8-5.fc46                 copr_base   53.3 KiB
 ocaml-srpm-macros                 noarch 0:11-4.fc45                  fedora       1.9 KiB
 openblas-srpm-macros              noarch 0:2-22.fc45                  fedora     112.0   B
 openldap                          x86_64 0:2.6.14-1.fc46              fedora     678.9 KiB
 openssl-libs                      x86_64 1:4.0.3-1.fc46               fedora       6.7 MiB
 p11-kit                           x86_64 0:0.26.5-1.fc46              copr_base    2.6 MiB
 p11-kit-trust                     x86_64 0:0.26.5-1.fc46              copr_base  511.9 KiB
 package-notes-srpm-macros         noarch 0:0.20-2.fc45                fedora       1.6 KiB
 pam-libs                          x86_64 0:1.7.2-4.fc46               copr_base  134.4 KiB
 pcre2                             x86_64 0:10.47-1.fc46.2             copr_base  765.7 KiB
 pcre2-syntax                      noarch 0:10.47-1.fc46.2             copr_base  281.9 KiB
 perl-srpm-macros                  noarch 0:1-65.fc45                  fedora     861.0   B
 pkgconf                           x86_64 0:2.5.1-2.fc46               copr_base   94.8 KiB
 pkgconf-m4                        noarch 0:2.5.1-2.fc46               copr_base   14.3 KiB
 pkgconf-pkg-config                x86_64 0:2.5.1-2.fc46               copr_base  989.0   B
 policycoreutils                   x86_64 0:3.11-2.fc46                copr_base  882.1 KiB
 popt                              x86_64 0:1.19-11.fc46               copr_base  132.5 KiB
 publicsuffix-list-dafsa           noarch 0:20260624-2.fc45            fedora      71.3 KiB
 pyproject-srpm-macros             noarch 0:1.23.2-1.fc45              fedora       3.4 KiB
 python-srpm-macros                noarch 0:3.15-2.fc45                fedora      51.6 KiB
 qt5-srpm-macros                   noarch 0:5.15.18-3.fc45             fedora     500.0   B
 qt6-srpm-macros                   noarch 0:6.11.2-1.fc46              fedora     472.0   B
 readline                          x86_64 0:8.3-6.fc46                 copr_base  535.4 KiB
 redhat-systemd-presets            noarch 0:102-3.fc45                 fedora       1.0 KiB
 redhat-systemd-presets-common     noarch 0:102-3.fc45                 fedora      16.9 KiB
 rpm                               x86_64 0:6.1.0-1.fc46               fedora       3.1 MiB
 rpm-build-libs                    x86_64 0:6.1.0-1.fc46               fedora     288.3 KiB
 rpm-libs                          x86_64 0:6.1.0-1.fc46               fedora       1.1 MiB
 rpm-plugin-selinux                x86_64 0:6.1.0-1.fc46               fedora      11.9 KiB
 rpm-sequoia                       x86_64 0:1.10.3-1.fc46              fedora       2.4 MiB
 rpm-sign-libs                     x86_64 0:6.1.0-1.fc46               fedora      39.6 KiB
 rust-srpm-macros                  noarch 0:28.5-2.fc45                fedora       5.5 KiB
 selinux-policy                    noarch 0:45.20-1.fc46               fedora      32.1 KiB
 selinux-policy-targeted           noarch 0:45.20-1.fc46               fedora      19.0 MiB
 setup                             noarch 0:2.15.1-2.fc45              fedora     725.6 KiB
 sqlite-libs                       x86_64 0:3.53.4-1.fc45              fedora       1.6 MiB
 systemd-libs                      x86_64 0:262-3.fc46                 fedora       2.8 MiB
 systemd-standalone-sysusers       x86_64 0:262-3.fc46                 fedora     981.3 KiB
 tpm2-tss                          x86_64 0:4.2.0-1.fc46               copr_base    1.7 MiB
 tree-sitter-srpm-macros           noarch 0:0.4.6-2.fc45               fedora       8.6 KiB
 util-linux-core                   x86_64 0:2.42.4-2.fc46              fedora       1.5 MiB
 xxhash-libs                       x86_64 0:0.8.4-1.fc46               fedora      94.0 KiB
 xz-libs                           x86_64 1:5.8.4-1.fc46               fedora     221.7 KiB
 zig-srpm-macros                   noarch 0:1-9.fc45                   fedora       1.3 KiB
 zip                               x86_64 0:3.0-46.fc45                fedora     694.1 KiB
 zlib-ng-compat                    x86_64 0:2.3.3-6.fc46               copr_base  173.4 KiB
 zstd                              x86_64 0:1.5.7-6.fc46               copr_base  491.6 KiB
Installing groups:
 Buildsystem building group                                                                

Transaction Summary:
 Installing:       190 packages

Total size of inbound packages is 71 MiB. Need to download 71 MiB.
After this operation, 231 MiB extra will be used (install 231 MiB, remove 0 B).
[  1/190] glibc-minimal-langpack-0:2.44 100% |  33.5 MiB/s | 137.1 KiB |  00m00s
[  2/190] fedora-release-common-0:46-0. 100% |   8.9 MiB/s |  18.2 KiB |  00m00s
[  3/190] redhat-rpm-config-0:345-4.fc4 100% |  19.1 MiB/s |  78.1 KiB |  00m00s
[  4/190] rpm-build-0:6.1.0-1.fc46.x86_ 100% |  30.9 MiB/s | 158.1 KiB |  00m00s
[  5/190] unzip-0:6.0-71.fc45.x86_64    100% |  27.8 MiB/s | 199.6 KiB |  00m00s
[  6/190] bzip2-0:1.0.8-24.fc46.x86_64  100% |  16.8 MiB/s |  51.7 KiB |  00m00s
[  7/190] coreutils-0:9.12-1.fc46.x86_6 100% | 162.5 MiB/s |   1.3 MiB |  00m00s
[  8/190] diffutils-0:3.12-6.fc45.x86_6 100% | 129.1 MiB/s | 396.6 KiB |  00m00s
[  9/190] bash-0:5.3.15-2.fc46.x86_64   100% | 101.9 MiB/s |   1.8 MiB |  00m00s
[ 10/190] cpio-0:2.15-10.fc46.x86_64    100% |  24.1 MiB/s | 296.0 KiB |  00m00s
[ 11/190] findutils-1:4.11.0-2.fc46.x86 100% |  77.7 MiB/s | 556.9 KiB |  00m00s
[ 12/190] grep-0:3.12-4.fc45.x86_64     100% |  98.0 MiB/s | 301.0 KiB |  00m00s
[ 13/190] gawk-0:5.4.1-1.fc46.x86_64    100% | 189.0 MiB/s |   1.1 MiB |  00m00s
[ 14/190] gzip-0:1.14-4.fc46.x86_64     100% |  34.3 MiB/s | 175.9 KiB |  00m00s
[ 15/190] info-0:7.3-3.fc46.x86_64      100% |  63.8 MiB/s | 196.1 KiB |  00m00s
[ 16/190] patch-0:2.8-6.fc46.x86_64     100% |  55.9 MiB/s | 114.4 KiB |  00m00s
[ 17/190] sed-0:4.10-2.fc45.x86_64      100% | 105.1 MiB/s | 322.8 KiB |  00m00s
[ 18/190] shadow-utils-2:4.20.0-1.fc46. 100% | 194.1 MiB/s |   1.4 MiB |  00m00s
[ 19/190] tar-2:1.35-9.fc45.x86_64      100% | 169.4 MiB/s | 867.4 KiB |  00m00s
[ 20/190] util-linux-0:2.42.4-2.fc46.x8 100% | 180.6 MiB/s |   1.3 MiB |  00m00s
[ 21/190] which-0:2.25-2.fc46.x86_64    100% |  13.3 MiB/s |  41.0 KiB |  00m00s
[ 22/190] xz-1:5.8.4-1.fc46.x86_64      100% | 159.8 MiB/s | 654.4 KiB |  00m00s
[ 23/190] fedora-repos-0:46-0.3.noarch  100% |   4.7 MiB/s |   9.6 KiB |  00m00s
[ 24/190] redhat-systemd-presets-0:102- 100% |   4.2 MiB/s |   8.5 KiB |  00m00s
[ 25/190] glibc-common-0:2.44.9000-4.fc 100% | 140.0 MiB/s | 430.0 KiB |  00m00s
[ 26/190] R-srpm-macros-0:1.3.7-3.fc45. 100% |   5.4 MiB/s |  11.1 KiB |  00m00s
[ 27/190] ansible-srpm-macros-0:1-22.fc 100% |   9.7 MiB/s |  19.8 KiB |  00m00s
[ 28/190] build-reproducibility-srpm-ma 100% |   5.3 MiB/s |  10.8 KiB |  00m00s
[ 29/190] cmake-srpm-macros-0:4.3.0-5.f 100% |   5.0 MiB/s |  10.3 KiB |  00m00s
[ 30/190] dwz-0:0.17-3.fc45.x86_64      100% |  45.3 MiB/s | 139.2 KiB |  00m00s
[ 31/190] efi-srpm-macros-0:6-9.fc45.no 100% |  10.5 MiB/s |  21.4 KiB |  00m00s
[ 32/190] erlang-srpm-macros-0:0.3.11-2 100% |   4.9 MiB/s |  10.0 KiB |  00m00s
[ 33/190] file-0:5.48-3.fc46.x86_64     100% |  24.7 MiB/s |  50.6 KiB |  00m00s
[ 34/190] filesystem-srpm-macros-0:3.18 100% |   8.6 MiB/s |  26.4 KiB |  00m00s
[ 35/190] fonts-srpm-macros-1:5.0.0-4.f 100% |  13.3 MiB/s |  27.2 KiB |  00m00s
[ 36/190] forge-srpm-macros-0:0.4.0-5.f 100% |   9.6 MiB/s |  19.7 KiB |  00m00s
[ 37/190] fpc-srpm-macros-0:1.3-17.fc45 100% |   3.8 MiB/s |   7.8 KiB |  00m00s
[ 38/190] gap-srpm-macros-0:2-3.fc45.no 100% |   4.5 MiB/s |   9.3 KiB |  00m00s
[ 39/190] ghc-srpm-macros-0:1.10-2.fc45 100% |   4.1 MiB/s |   8.5 KiB |  00m00s
[ 40/190] gnat-srpm-macros-0:7-3.fc45.n 100% |   4.2 MiB/s |   8.6 KiB |  00m00s
[ 41/190] gnome-srpm-macros-0:1.0-2.fc4 100% |   4.3 MiB/s |   8.8 KiB |  00m00s
[ 42/190] go-srpm-macros-0:3.8.0-3.fc45 100% |  13.6 MiB/s |  27.8 KiB |  00m00s
[ 43/190] java-srpm-macros-0:1-9.fc45.n 100% |   4.0 MiB/s |   8.3 KiB |  00m00s
[ 44/190] kernel-srpm-macros-0:1.0-30.f 100% |   4.0 MiB/s |   8.3 KiB |  00m00s
[ 45/190] lua-srpm-macros-0:1-18.fc45.n 100% |   4.2 MiB/s |   8.7 KiB |  00m00s
[ 46/190] meson-srpm-macros-0:1.12.1-2. 100% |   5.8 MiB/s |  11.8 KiB |  00m00s
[ 47/190] ocaml-srpm-macros-0:11-4.fc45 100% |   4.4 MiB/s |   9.0 KiB |  00m00s
[ 48/190] openblas-srpm-macros-0:2-22.f 100% |   3.7 MiB/s |   7.5 KiB |  00m00s
[ 49/190] package-notes-srpm-macros-0:0 100% |   5.1 MiB/s |  10.5 KiB |  00m00s
[ 50/190] perl-srpm-macros-0:1-65.fc45. 100% |   4.1 MiB/s |   8.4 KiB |  00m00s
[ 51/190] pyproject-srpm-macros-0:1.23. 100% |   7.6 MiB/s |  15.6 KiB |  00m00s
[ 52/190] python-srpm-macros-0:3.15-2.f 100% |  11.6 MiB/s |  23.9 KiB |  00m00s
[ 53/190] qt5-srpm-macros-0:5.15.18-3.f 100% |   2.6 MiB/s |   8.1 KiB |  00m00s
[ 54/190] qt6-srpm-macros-0:6.11.2-1.fc 100% |   4.4 MiB/s |   9.1 KiB |  00m00s
[ 55/190] rpm-0:6.1.0-1.fc46.x86_64     100% | 139.5 MiB/s | 571.3 KiB |  00m00s
[ 56/190] rust-srpm-macros-0:28.5-2.fc4 100% |   3.7 MiB/s |  11.4 KiB |  00m00s
[ 57/190] tree-sitter-srpm-macros-0:0.4 100% |   4.6 MiB/s |  14.0 KiB |  00m00s
[ 58/190] zig-srpm-macros-0:1-9.fc45.no 100% |   4.3 MiB/s |   8.8 KiB |  00m00s
[ 59/190] zip-0:3.0-46.fc45.x86_64      100% |  86.1 MiB/s | 264.6 KiB |  00m00s
[ 60/190] elfutils-0:0.196-1.fc46.x86_6 100% | 130.9 MiB/s | 670.0 KiB |  00m00s
[ 61/190] elfutils-libelf-0:0.196-1.fc4 100% |  58.2 MiB/s | 238.4 KiB |  00m00s
[ 62/190] glibc-0:2.44.9000-4.fc46.x86_ 100% | 276.1 MiB/s |   2.5 MiB |  00m00s
[ 63/190] libgcc-0:16.2.1-2.fc46.1.x86_ 100% |  22.2 MiB/s | 136.6 KiB |  00m00s
[ 64/190] rpm-build-libs-0:6.1.0-1.fc46 100% |  26.3 MiB/s | 134.8 KiB |  00m00s
[ 65/190] rpm-libs-0:6.1.0-1.fc46.x86_6 100% |  77.6 MiB/s | 476.6 KiB |  00m00s
[ 66/190] libstdc++-0:16.2.1-2.fc46.1.x 100% |  71.5 MiB/s |   1.0 MiB |  00m00s
[ 67/190] filesystem-0:3.18-59.fc45.x86 100% | 259.4 MiB/s |   1.8 MiB |  00m00s
[ 68/190] coreutils-common-0:9.12-1.fc4 100% | 202.7 MiB/s |   2.2 MiB |  00m00s
[ 69/190] gmp-1:6.3.0-6.fc45.x86_64     100% |  34.9 MiB/s | 321.8 KiB |  00m00s
[ 70/190] libacl-0:2.4.0-2.fc45.x86_64  100% |   5.4 MiB/s |  27.5 KiB |  00m00s
[ 71/190] libcap-0:2.78-2.fc45.x86_64   100% |  43.3 MiB/s |  88.6 KiB |  00m00s
[ 72/190] openssl-libs-1:4.0.3-1.fc46.x 100% | 234.3 MiB/s |   2.3 MiB |  00m00s
[ 73/190] systemd-libs-0:262-3.fc46.x86 100% |  78.2 MiB/s | 961.5 KiB |  00m00s
[ 74/190] mpfr-0:4.2.2-4.fc45.x86_64    100% |  31.7 MiB/s | 357.4 KiB |  00m00s
[ 75/190] audit-libs-0:4.2.1-2.fc45.x86 100% |  46.6 MiB/s | 143.3 KiB |  00m00s
[ 76/190] libsemanage-0:3.11-4.fc46.x86 100% |  63.7 MiB/s | 130.5 KiB |  00m00s
[ 77/190] libxcrypt-0:4.5.2-4.fc45.x86_ 100% |  42.6 MiB/s | 130.9 KiB |  00m00s
[ 78/190] setup-0:2.15.1-2.fc45.noarch  100% |  51.3 MiB/s | 157.6 KiB |  00m00s
[ 79/190] libfdisk-0:2.42.4-2.fc46.x86_ 100% |  55.2 MiB/s | 169.6 KiB |  00m00s
[ 80/190] liblastlog2-0:2.42.4-2.fc46.x 100% |  12.2 MiB/s |  25.0 KiB |  00m00s
[ 81/190] libsmartcols-0:2.42.4-2.fc46. 100% |  28.9 MiB/s |  88.8 KiB |  00m00s
[ 82/190] libuuid-0:2.42.4-2.fc46.x86_6 100% |  13.5 MiB/s |  27.7 KiB |  00m00s
[ 83/190] util-linux-core-0:2.42.4-2.fc 100% | 189.8 MiB/s | 582.9 KiB |  00m00s
[ 84/190] xz-libs-1:5.8.4-1.fc46.x86_64 100% |  37.9 MiB/s | 116.5 KiB |  00m00s
[ 85/190] fedora-gpg-keys-0:46-0.3.noar 100% |  46.8 MiB/s | 143.8 KiB |  00m00s
[ 86/190] fedora-repos-rawhide-0:46-0.3 100% |   4.4 MiB/s |   9.0 KiB |  00m00s
[ 87/190] redhat-systemd-presets-common 100% |   6.5 MiB/s |  13.2 KiB |  00m00s
[ 88/190] add-determinism-0:0.7.3-3.fc4 100% | 165.2 MiB/s | 845.7 KiB |  00m00s
[ 89/190] linkdupes-0:0.7.3-3.fc45.x86_ 100% |  66.3 MiB/s | 339.2 KiB |  00m00s
[ 90/190] file-libs-0:5.48-3.fc46.x86_6 100% | 144.0 MiB/s | 884.7 KiB |  00m00s
[ 91/190] elfutils-debuginfod-client-0: 100% |  15.3 MiB/s |  47.1 KiB |  00m00s
[ 92/190] elfutils-libs-0:0.196-1.fc46. 100% |  69.5 MiB/s | 284.9 KiB |  00m00s
[ 93/190] libpfm-0:4.13.0-23.fc45.x86_6 100% |  44.3 MiB/s | 227.0 KiB |  00m00s
[ 94/190] glibc-gconv-extra-0:2.44.9000 100% | 214.1 MiB/s |   1.7 MiB |  00m00s
[ 95/190] libgomp-0:16.2.1-2.fc46.1.x86 100% |  55.5 MiB/s | 397.6 KiB |  00m00s
[ 96/190] lua-libs-0:5.5.1-2.fc46.x86_6 100% |  28.2 MiB/s | 144.4 KiB |  00m00s
[ 97/190] rpm-sign-libs-0:6.1.0-1.fc46. 100% |  13.2 MiB/s |  26.9 KiB |  00m00s
[ 98/190] ca-certificates-0:2026.2.90_v 100% | 188.4 MiB/s | 964.7 KiB |  00m00s
[ 99/190] crypto-policies-0:20260713-2. 100% |  19.0 MiB/s |  97.5 KiB |  00m00s
[100/190] fips-provider-0:1.5.3-1.fc46. 100% | 202.3 MiB/s |   1.6 MiB |  00m00s
[101/190] libselinux-0:3.11-5.fc46.x86_ 100% |  20.3 MiB/s | 104.0 KiB |  00m00s
[102/190] libmount-0:2.42.4-2.fc46.x86_ 100% |  35.1 MiB/s | 179.8 KiB |  00m00s
[103/190] libblkid-0:2.42.4-2.fc46.x86_ 100% |  65.5 MiB/s | 134.0 KiB |  00m00s
[104/190] bzip2-libs-0:1.0.8-24.fc46.x8 100% |  23.6 MiB/s |  48.3 KiB |  00m00s
[105/190] ncurses-libs-0:6.6-3.fc46.x86 100% |  80.4 MiB/s | 329.3 KiB |  00m00s
[106/190] ncurses-base-0:6.6-3.fc46.noa 100% |  15.5 MiB/s |  63.4 KiB |  00m00s
[107/190] pam-libs-0:1.7.2-4.fc46.x86_6 100% |  27.7 MiB/s |  56.7 KiB |  00m00s
[108/190] readline-0:8.3-6.fc46.x86_64  100% |  76.1 MiB/s | 233.9 KiB |  00m00s
[109/190] binutils-0:2.47.50-12.fc46.x8 100% | 288.4 MiB/s |   5.2 MiB |  00m00s
[110/190] libcap-ng-0:0.9.6-1.fc46.x86_ 100% |   2.8 MiB/s |  34.8 KiB |  00m00s
[111/190] zlib-ng-compat-0:2.3.3-6.fc46 100% |  12.5 MiB/s |  89.9 KiB |  00m00s
[112/190] gpgverify-0:2.2-5.fc45.noarch 100% |   5.5 MiB/s |  11.3 KiB |  00m00s
[113/190] gnupg2-dirmngr-0:2.4.9-18.fc4 100% |  55.7 MiB/s | 285.4 KiB |  00m00s
[114/190] gnupg2-gpg-agent-0:2.4.9-18.f 100% |  67.3 MiB/s | 275.7 KiB |  00m00s
[115/190] gnupg2-0:2.4.9-18.fc46.x86_64 100% | 184.5 MiB/s |   1.7 MiB |  00m00s
[116/190] gnupg2-gpgconf-0:2.4.9-18.fc4 100% |  29.1 MiB/s | 119.2 KiB |  00m00s
[117/190] gnupg2-keyboxd-0:2.4.9-18.fc4 100% |  33.2 MiB/s | 101.8 KiB |  00m00s
[118/190] gnupg2-verify-0:2.4.9-18.fc46 100% |  60.9 MiB/s | 187.2 KiB |  00m00s
[119/190] libgcrypt-0:1.12.4-1.fc46.x86 100% | 154.1 MiB/s | 631.2 KiB |  00m00s
[120/190] gnutls-0:3.8.13-5.fc46.x86_64 100% | 284.4 MiB/s |   1.4 MiB |  00m00s
[121/190] openldap-0:2.6.14-1.fc46.x86_ 100% |  66.6 MiB/s | 272.6 KiB |  00m00s
[122/190] nettle-0:4.0-5.fc45.x86_64    100% | 104.9 MiB/s | 429.7 KiB |  00m00s
[123/190] ima-evm-utils-libs-0:1.6.2-12 100% |  14.5 MiB/s |  29.7 KiB |  00m00s
[124/190] cyrus-sasl-lib-0:2.1.28-37.fc 100% | 199.7 MiB/s | 817.8 KiB |  00m00s
[125/190] libtool-ltdl-0:2.6.2-1.fc46.x 100% |   9.0 MiB/s |  36.8 KiB |  00m00s
[126/190] libfsverity-0:1.7-4.fc45.x86_ 100% |   9.3 MiB/s |  19.0 KiB |  00m00s
[127/190] popt-0:1.19-11.fc46.x86_64    100% |  28.4 MiB/s |  58.2 KiB |  00m00s
[128/190] libzstd-0:1.5.7-6.fc46.x86_64 100% | 116.2 MiB/s | 356.8 KiB |  00m00s
[129/190] rpm-sequoia-0:1.10.3-1.fc46.x 100% | 230.1 MiB/s | 942.6 KiB |  00m00s
[130/190] debugedit-0:5.3-3.fc46.x86_64 100% |  42.0 MiB/s |  86.0 KiB |  00m00s
[131/190] sqlite-libs-0:3.53.4-1.fc45.x 100% | 158.6 MiB/s | 812.1 KiB |  00m00s
[132/190] pkgconf-pkg-config-0:2.5.1-2. 100% |   4.6 MiB/s |   9.4 KiB |  00m00s
[133/190] libarchive-0:3.8.9-2.fc46.x86 100% | 108.9 MiB/s | 446.0 KiB |  00m00s
[134/190] libxml2-0:2.15.4-1.fc46.x86_6 100% | 132.2 MiB/s | 676.7 KiB |  00m00s
[135/190] pkgconf-0:2.5.1-2.fc46.x86_64 100% |  24.1 MiB/s |  49.3 KiB |  00m00s
[136/190] pkgconf-m4-0:2.5.1-2.fc46.noa 100% |   6.7 MiB/s |  13.7 KiB |  00m00s
[137/190] libpkgconf-0:2.5.1-2.fc46.x86 100% |  13.0 MiB/s |  40.1 KiB |  00m00s
[138/190] zstd-0:1.5.7-6.fc46.x86_64    100% |  44.6 MiB/s | 182.7 KiB |  00m00s
[139/190] curl-0:8.23.0~rc2-1.fc46.x86_ 100% |  79.6 MiB/s | 244.5 KiB |  00m00s
[140/190] ed-0:1.22.6-1.fc46.x86_64     100% |  43.4 MiB/s |  88.8 KiB |  00m00s
[141/190] libattr-0:2.6.0-2.fc46.x86_64 100% |   8.5 MiB/s |  17.4 KiB |  00m00s
[142/190] libevent-0:2.1.13-1.fc46.x86_ 100% | 141.3 MiB/s | 289.4 KiB |  00m00s
[143/190] libsepol-0:3.11-2.fc46.x86_64 100% | 116.0 MiB/s | 356.4 KiB |  00m00s
[144/190] pcre2-0:10.47-1.fc46.2.x86_64 100% |  50.3 MiB/s | 257.3 KiB |  00m00s
[145/190] pcre2-syntax-0:10.47-1.fc46.2 100% |  40.3 MiB/s | 165.0 KiB |  00m00s
[146/190] libgpg-error-0:1.61-2.fc46.x8 100% |  60.4 MiB/s | 247.5 KiB |  00m00s
[147/190] lz4-libs-0:1.10.0-5.fc46.x86_ 100% |  21.4 MiB/s |  87.7 KiB |  00m00s
[148/190] libidn2-0:2.3.8-4.fc46.x86_64 100% |  41.2 MiB/s | 168.8 KiB |  00m00s
[149/190] libtasn1-0:4.21.0-2.fc46.x86_ 100% |  19.6 MiB/s |  80.1 KiB |  00m00s
[150/190] libunistring-0:1.1-12.fc46.x8 100% | 108.3 MiB/s | 554.5 KiB |  00m00s
[151/190] p11-kit-trust-0:0.26.5-1.fc46 100% |  35.9 MiB/s | 147.1 KiB |  00m00s
[152/190] p11-kit-0:0.26.5-1.fc46.x86_6 100% |  76.3 MiB/s | 546.9 KiB |  00m00s
[153/190] json-c-0:0.18-9.fc46.x86_64   100% |  15.0 MiB/s |  46.0 KiB |  00m00s
[154/190] gdbm-libs-1:1.23-12.fc46.x86_ 100% |  19.3 MiB/s |  59.2 KiB |  00m00s
[155/190] gnulib-l10n-0:20241231-4.fc46 100% |  46.6 MiB/s | 143.2 KiB |  00m00s
[156/190] libffi-0:3.8.0-1.fc46.x86_64  100% |  15.1 MiB/s |  46.4 KiB |  00m00s
[157/190] alternatives-0:1.33-6.fc46.x8 100% |  12.5 MiB/s |  38.4 KiB |  00m00s
[158/190] jansson-0:2.14-5.fc46.x86_64  100% |  24.5 MiB/s |  50.2 KiB |  00m00s
[159/190] libeconf-0:0.7.9-4.fc46.x86_6 100% |  17.7 MiB/s |  36.3 KiB |  00m00s
[160/190] libassuan-0:2.5.7-6.fc46.x86_ 100% |  22.1 MiB/s |  67.9 KiB |  00m00s
[161/190] npth-0:1.8-5.fc46.x86_64      100% |  12.5 MiB/s |  25.5 KiB |  00m00s
[162/190] tpm2-tss-0:4.2.0-1.fc46.x86_6 100% |  84.3 MiB/s | 431.5 KiB |  00m00s
[163/190] libusb1-0:1.0.30-2.fc45.x86_6 100% |  40.9 MiB/s |  83.8 KiB |  00m00s
[164/190] fedora-release-0:46-0.1.noarc 100% |   5.8 MiB/s |  11.9 KiB |  00m00s
[165/190] libksba-0:1.8.1-1.fc46.x86_64 100% |  39.6 MiB/s | 162.3 KiB |  00m00s
[166/190] systemd-standalone-sysusers-0 100% | 105.8 MiB/s | 433.4 KiB |  00m00s
[167/190] xxhash-libs-0:0.8.4-1.fc46.x8 100% |   4.5 MiB/s |  41.3 KiB |  00m00s
[168/190] fedora-release-identity-basic 100% |   1.5 MiB/s |  12.7 KiB |  00m00s
[169/190] gdb-minimal-0:17.2-6.fc46.x86 100% | 263.2 MiB/s |   4.7 MiB |  00m00s
[170/190] libcurl-0:8.23.0~rc2-1.fc46.x 100% |  60.5 MiB/s | 495.9 KiB |  00m00s
[171/190] krb5-libs-0:1.22.2-9.fc45.x86 100% |  98.0 MiB/s | 803.1 KiB |  00m00s
[172/190] libpsl-0:0.23.3-1.fc46.x86_64 100% |  33.0 MiB/s |  67.7 KiB |  00m00s
[173/190] libssh-0:0.12.2-1.fc45.x86_64 100% | 144.5 MiB/s | 295.9 KiB |  00m00s
[174/190] ngtcp2-0:1.22.1-3.fc45.x86_64 100% |  51.3 MiB/s | 157.7 KiB |  00m00s
[175/190] ngtcp2-crypto-ossl-0:1.22.1-3 100% |   9.1 MiB/s |  27.8 KiB |  00m00s
[176/190] libverto-0:0.3.2-13.fc45.x86_ 100% |  10.2 MiB/s |  21.0 KiB |  00m00s
[177/190] publicsuffix-list-dafsa-0:202 100% |  29.8 MiB/s |  61.1 KiB |  00m00s
[178/190] libssh-config-0:0.12.2-1.fc45 100% |   4.4 MiB/s |   8.9 KiB |  00m00s
[179/190] selinux-policy-0:45.20-1.fc46 100% |   4.5 MiB/s |  41.6 KiB |  00m00s
[180/190] rpm-plugin-selinux-0:6.1.0-1. 100% |   2.2 MiB/s |  17.8 KiB |  00m00s
[181/190] policycoreutils-0:3.11-2.fc46 100% |  76.7 MiB/s | 235.5 KiB |  00m00s
[182/190] libselinux-utils-0:3.11-5.fc4 100% |  20.1 MiB/s | 123.8 KiB |  00m00s
[183/190] libfido2-0:1.17.0-5.fc46.x86_ 100% |  33.3 MiB/s | 102.1 KiB |  00m00s
[184/190] selinux-policy-targeted-0:45. 100% | 284.2 MiB/s |   6.8 MiB |  00m00s
[185/190] libcbor-0:0.14.0-3.fc45.x86_6 100% |   5.1 MiB/s |  36.8 KiB |  00m00s
[186/190] libbrotli-0:1.2.0-6.fc46.x86_ 100% |  51.3 MiB/s | 367.6 KiB |  00m00s
[187/190] libnghttp2-0:1.69.0-6.fc46.x8 100% |  37.7 MiB/s |  77.2 KiB |  00m00s
[188/190] libnghttp3-0:1.18.0-1.fc46.x8 100% |  39.7 MiB/s |  81.3 KiB |  00m00s
[189/190] keyutils-libs-0:1.6.3-8.fc46. 100% |  15.2 MiB/s |  31.2 KiB |  00m00s
[190/190] libcom_err-0:1.47.4-2.fc46.x8 100% |  12.8 MiB/s |  26.3 KiB |  00m00s
--------------------------------------------------------------------------------
[190/190] Total                         100% | 217.1 MiB/s |  71.2 MiB |  00m00s
Running transaction
Importing OpenPGP key 0x91211FCE:
 UserID     : "Fedora (46) <fedora-46-primary@fedoraproject.org>"
 Fingerprint: D924B10D3E810DABDD8B56B596E7E91491211FCE
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-46-primary
The key was successfully imported.
Importing OpenPGP key 0x91211FCE:
 UserID     : "Fedora (46) <fedora-46-primary@fedoraproject.org>"
 Fingerprint: D924B10D3E810DABDD8B56B596E7E91491211FCE
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-46-primary
The key was successfully imported.
Importing OpenPGP key 0xF577861E:
 UserID     : "Fedora (45) <fedora-45-primary@fedoraproject.org>"
 Fingerprint: 4F50A6114CD5C6976A7F1179655A4B02F577861E
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-45-primary
The key was successfully imported.
Importing OpenPGP key 0x9488FB64:
 UserID     : "Fedora (47) <fedora-47-primary@fedoraproject.org>"
 Fingerprint: B2E766FA50CA6FA2D5ED06FC09D879E09488FB64
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-47-primary
The key was successfully imported.
[  1/192] Verify package files          100% | 637.0   B/s | 190.0   B |  00m00s
>>> Running %pretrans scriptlet: filesystem-0:3.18-59.fc45.x86_64
>>> Finished %pretrans scriptlet: filesystem-0:3.18-59.fc45.x86_64
>>> [RPM] /var/lib/mock/fedora-rawhide-x86_64-1790841583.496476/root/var/cache/dnf/copr_base-64ab9e188b99823d/packages/bash-5.3.15-2.fc46.x86_64.rpm: Header OpenPGP V4 RSA/SHA256 signature, key ID 5291f7fa5c4b3009: NOKEY
>>> [RPM] failed to open /var/lib/mock/fedora-rawhide-x86_64-1790841583.496476/root/etc/group for id/name lookup: No such file or directory
[  2/192] Prepare transaction           100% |   3.3 KiB/s | 190.0   B |  00m00s
[  3/192] Installing libgcc-0:16.2.1-2. 100% | 266.0 MiB/s | 272.4 KiB |  00m00s
[  4/192] Installing redhat-systemd-pre 100% |   0.0   B/s |   1.5 KiB |  00m00s
[  5/192] Installing redhat-systemd-pre 100% |   0.0   B/s |  18.1 KiB |  00m00s
[  6/192] Installing libssh-config-0:0. 100% |   0.0   B/s | 816.0   B |  00m00s
[  7/192] Installing publicsuffix-list- 100% |   0.0   B/s |  72.0 KiB |  00m00s
[  8/192] Installing fedora-release-ide 100% |   0.0   B/s | 920.0   B |  00m00s
[  9/192] Installing fedora-gpg-keys-0: 100% |  44.4 MiB/s | 181.7 KiB |  00m00s
[ 10/192] Installing fedora-repos-rawhi 100% |   0.0   B/s |   2.5 KiB |  00m00s
[ 11/192] Installing fedora-repos-0:46- 100% |   0.0   B/s |   5.9 KiB |  00m00s
[ 12/192] Installing fedora-release-com 100% |   7.8 MiB/s |   8.0 KiB |  00m00s
[ 13/192] Installing fedora-release-0:4 100% |  15.1 KiB/s | 124.0   B |  00m00s
>>> Running sysusers scriptlet: setup-0:2.15.1-2.fc45.noarch
>>> Finished sysusers scriptlet: setup-0:2.15.1-2.fc45.noarch
>>> Scriptlet output:
>>> Creating group 'adm' with GID 4.
>>> Creating group 'audio' with GID 63.
>>> Creating group 'cdrom' with GID 11.
>>> Creating group 'clock' with GID 103.
>>> Creating group 'dialout' with GID 18.
>>> Creating group 'disk' with GID 6.
>>> Creating group 'floppy' with GID 19.
>>> Creating group 'ftp' with GID 50.
>>> Creating group 'games' with GID 20.
>>> Creating group 'input' with GID 104.
>>> Creating group 'kmem' with GID 9.
>>> Creating group 'kvm' with GID 36.
>>> Creating group 'lock' with GID 54.
>>> Creating group 'lp' with GID 7.
>>> Creating group 'mail' with GID 12.
>>> Creating group 'man' with GID 15.
>>> Creating group 'mem' with GID 8.
>>> Creating group 'nobody' with GID 65534.
>>> Creating group 'render' with GID 105.
>>> Creating group 'root' with GID 0.
>>> Creating group 'sgx' with GID 106.
>>> Creating group 'sys' with GID 3.
>>> Creating group 'tape' with GID 33.
>>> Creating group 'tty' with GID 5.
>>> Creating group 'users' with GID 100.
>>> Creating group 'utmp' with GID 22.
>>> Creating group 'video' with GID 39.
>>> Creating group 'wheel' with GID 10.
>>> Creating user 'adm' (adm) with UID 3 and GID 4.
>>> Creating group 'bin' with GID 1.
>>> Creating user 'bin' (bin) with UID 1 and GID 1.
>>> Creating group 'daemon' with GID 2.
>>> Creating user 'daemon' (daemon) with UID 2 and GID 2.
>>> Creating user 'ftp' (FTP User) with UID 14 and GID 50.
>>> Creating user 'games' (games) with UID 12 and GID 100.
>>> Creating user 'halt' (halt) with UID 7 and GID 0.
>>> Creating user 'lp' (lp) with UID 4 and GID 7.
>>> Creating user 'mail' (mail) with UID 8 and GID 12.
>>> Creating user 'nobody' (Kernel Overflow User) with UID 65534 and GID 65534.
>>> Creating user 'operator' (operator) with UID 11 and GID 0.
>>> Creating user 'root' (Super User) with UID 0 and GID 0.
>>> Creating user 'shutdown' (shutdown) with UID 6 and GID 0.
>>> Creating user 'sync' (sync) with UID 5 and GID 0.
>>> 
[ 14/192] Installing setup-0:2.15.1-2.f 100% |  37.6 MiB/s | 731.3 KiB |  00m00s
>>> [RPM] /etc/hosts created as /etc/hosts.rpmnew
[ 15/192] Installing filesystem-0:3.18- 100% |   2.6 MiB/s | 253.6 KiB |  00m00s
[ 16/192] Installing gnulib-l10n-0:2024 100% | 215.5 MiB/s | 661.9 KiB |  00m00s
[ 17/192] Installing coreutils-common-0 100% | 412.9 MiB/s |  11.6 MiB |  00m00s
[ 18/192] Installing pcre2-syntax-0:10. 100% | 277.7 MiB/s | 284.3 KiB |  00m00s
[ 19/192] Installing pkgconf-m4-0:2.5.1 100% |   0.0   B/s |  14.7 KiB |  00m00s
[ 20/192] Installing ncurses-base-0:6.6 100% |  69.4 MiB/s | 355.3 KiB |  00m00s
[ 21/192] Installing glibc-0:2.44.9000- 100% | 194.0 MiB/s |   7.2 MiB |  00m00s
[ 22/192] Installing ncurses-libs-0:6.6 100% | 235.6 MiB/s | 964.9 KiB |  00m00s
[ 23/192] Installing bash-0:5.3.15-2.fc 100% | 235.5 MiB/s |   8.5 MiB |  00m00s
[ 24/192] Installing glibc-common-0:2.4 100% |  49.3 MiB/s |   1.0 MiB |  00m00s
[ 25/192] Installing glibc-minimal-lang 100% |  60.5 KiB/s | 124.0   B |  00m00s
[ 26/192] Installing glibc-gconv-extra- 100% | 288.4 MiB/s |   7.8 MiB |  00m00s
[ 27/192] Installing zlib-ng-compat-0:2 100% | 170.1 MiB/s | 174.2 KiB |  00m00s
[ 28/192] Installing bzip2-libs-0:1.0.8 100% |  91.2 MiB/s |  93.4 KiB |  00m00s
[ 29/192] Installing libgpg-error-0:1.6 100% |  47.5 MiB/s | 972.2 KiB |  00m00s
[ 30/192] Installing readline-0:8.3-6.f 100% | 262.5 MiB/s | 537.6 KiB |  00m00s
[ 31/192] Installing libstdc++-0:16.2.1 100% | 385.8 MiB/s |   3.1 MiB |  00m00s
[ 32/192] Installing libzstd-0:1.5.7-6. 100% | 314.0 MiB/s | 964.5 KiB |  00m00s
[ 33/192] Installing elfutils-libelf-0: 100% | 481.0 MiB/s |   1.4 MiB |  00m00s
[ 34/192] Installing libgcrypt-0:1.12.4 100% | 333.2 MiB/s |   1.7 MiB |  00m00s
[ 35/192] Installing libassuan-0:2.5.7- 100% | 165.9 MiB/s | 169.8 KiB |  00m00s
[ 36/192] Installing gmp-1:6.3.0-6.fc45 100% | 399.1 MiB/s | 817.4 KiB |  00m00s
[ 37/192] Installing libacl-0:2.4.0-2.f 100% |   0.0   B/s |  44.7 KiB |  00m00s
[ 38/192] Installing systemd-libs-0:262 100% | 395.7 MiB/s |   2.8 MiB |  00m00s
[ 39/192] Installing libuuid-0:2.42.4-2 100% |   0.0   B/s |  38.2 KiB |  00m00s
[ 40/192] Installing xz-libs-1:5.8.4-1. 100% | 217.6 MiB/s | 222.8 KiB |  00m00s
[ 41/192] Installing popt-0:1.19-11.fc4 100% |  67.9 MiB/s | 139.1 KiB |  00m00s
[ 42/192] Installing sqlite-libs-0:3.53 100% | 323.8 MiB/s |   1.6 MiB |  00m00s
[ 43/192] Installing npth-0:1.8-5.fc46. 100% |   0.0   B/s |  54.4 KiB |  00m00s
[ 44/192] Installing elfutils-libs-0:0. 100% | 352.2 MiB/s | 721.3 KiB |  00m00s
[ 45/192] Installing libblkid-0:2.42.4- 100% | 276.6 MiB/s | 283.3 KiB |  00m00s
[ 46/192] Installing libsepol-0:3.11-2. 100% | 307.7 MiB/s | 945.4 KiB |  00m00s
[ 47/192] Installing gnupg2-gpgconf-0:2 100% |  10.9 MiB/s | 269.0 KiB |  00m00s
[ 48/192] Installing crypto-policies-0: 100% |  38.9 MiB/s | 159.5 KiB |  00m00s
[ 49/192] Installing libxcrypt-0:4.5.2- 100% | 289.0 MiB/s | 295.9 KiB |  00m00s
[ 50/192] Installing pcre2-0:10.47-1.fc 100% | 374.6 MiB/s | 767.1 KiB |  00m00s
[ 51/192] Installing libselinux-0:3.11- 100% | 201.6 MiB/s | 206.4 KiB |  00m00s
[ 52/192] Installing grep-0:3.12-4.fc45 100% |  45.6 MiB/s |   1.0 MiB |  00m00s
[ 53/192] Installing sed-0:4.10-2.fc45. 100% |  42.7 MiB/s | 874.9 KiB |  00m00s
[ 54/192] Installing findutils-1:4.11.0 100% |  90.1 MiB/s |   2.0 MiB |  00m00s
[ 55/192] Installing libtasn1-0:4.21.0- 100% | 186.0 MiB/s | 190.5 KiB |  00m00s
[ 56/192] Installing libunistring-0:1.1 100% | 347.6 MiB/s |   1.7 MiB |  00m00s
[ 57/192] Installing libidn2-0:2.3.8-4. 100% | 183.1 MiB/s | 562.5 KiB |  00m00s
[ 58/192] Installing json-c-0:0.18-9.fc 100% |  85.6 MiB/s |  87.7 KiB |  00m00s
[ 59/192] Installing xz-1:5.8.4-1.fc46. 100% |  64.8 MiB/s |   1.4 MiB |  00m00s
[ 60/192] Installing libmount-0:2.42.4- 100% | 200.2 MiB/s | 410.0 KiB |  00m00s
[ 61/192] Installing gnupg2-verify-0:2. 100% |  21.7 MiB/s | 400.6 KiB |  00m00s
[ 62/192] Installing mpfr-0:4.2.2-4.fc4 100% | 277.0 MiB/s | 850.9 KiB |  00m00s
[ 63/192] Installing gawk-0:5.4.1-1.fc4 100% |  95.6 MiB/s |   2.2 MiB |  00m00s
[ 64/192] Installing dwz-0:0.17-3.fc45. 100% |  16.8 MiB/s | 292.5 KiB |  00m00s
[ 65/192] Installing libksba-0:1.8.1-1. 100% | 210.7 MiB/s | 431.5 KiB |  00m00s
[ 66/192] Installing unzip-0:6.0-71.fc4 100% |  24.2 MiB/s | 445.3 KiB |  00m00s
[ 67/192] Installing file-libs-0:5.48-3 100% | 685.8 MiB/s |  12.3 MiB |  00m00s
[ 68/192] Installing file-0:5.48-3.fc46 100% |   5.9 MiB/s | 103.4 KiB |  00m00s
[ 69/192] Installing diffutils-0:3.12-6 100% |  74.5 MiB/s |   1.6 MiB |  00m00s
[ 70/192] Installing libsmartcols-0:2.4 100% | 185.2 MiB/s | 189.6 KiB |  00m00s
[ 71/192] Installing lua-libs-0:5.5.1-2 100% | 292.4 MiB/s | 299.4 KiB |  00m00s
[ 72/192] Installing libcap-ng-0:0.9.6- 100% |  69.0 MiB/s |  70.6 KiB |  00m00s
[ 73/192] Installing audit-libs-0:4.2.1 100% | 191.9 MiB/s | 393.1 KiB |  00m00s
[ 74/192] Installing libsemanage-0:3.11 100% | 314.8 MiB/s | 322.4 KiB |  00m00s
[ 75/192] Installing libattr-0:2.6.0-2. 100% |   0.0   B/s |  25.1 KiB |  00m00s
[ 76/192] Installing libffi-0:3.8.0-1.f 100% |  94.6 MiB/s |  96.9 KiB |  00m00s
[ 77/192] Installing p11-kit-0:0.26.5-1 100% | 103.2 MiB/s |   2.6 MiB |  00m00s
[ 78/192] Installing alternatives-0:1.3 100% |   3.6 MiB/s |  63.4 KiB |  00m00s
[ 79/192] Installing p11-kit-trust-0:0. 100% |  20.1 MiB/s | 513.6 KiB |  00m00s
[ 80/192] Installing libeconf-0:0.7.9-4 100% |  69.0 MiB/s |  70.6 KiB |  00m00s
[ 81/192] Installing pam-libs-0:1.7.2-4 100% | 133.6 MiB/s | 136.9 KiB |  00m00s
[ 82/192] Installing libcap-0:2.78-2.fc 100% |  11.6 MiB/s | 213.3 KiB |  00m00s
[ 83/192] Installing ngtcp2-0:1.22.1-3. 100% | 327.9 MiB/s | 335.8 KiB |  00m00s
[ 84/192] Installing liblastlog2-0:2.42 100% |   6.5 MiB/s |  39.8 KiB |  00m00s
[ 85/192] Installing util-linux-core-0: 100% |  63.0 MiB/s |   1.5 MiB |  00m00s
[ 86/192] Installing zip-0:3.0-46.fc45. 100% |  35.9 MiB/s | 698.0 KiB |  00m00s
[ 87/192] Installing gnupg2-keyboxd-0:2 100% |  36.4 MiB/s | 223.5 KiB |  00m00s
[ 88/192] Installing libpsl-0:0.23.3-1. 100% |  79.6 MiB/s |  81.5 KiB |  00m00s
[ 89/192] Installing tar-2:1.35-9.fc45. 100% | 114.4 MiB/s |   3.0 MiB |  00m00s
[ 90/192] Installing linkdupes-0:0.7.3- 100% |  40.3 MiB/s | 783.5 KiB |  00m00s
[ 91/192] Installing libselinux-utils-0 100% |  16.5 MiB/s | 320.4 KiB |  00m00s
[ 92/192] Installing libfdisk-0:2.42.4- 100% | 384.0 MiB/s | 393.2 KiB |  00m00s
[ 93/192] Installing fips-provider-0:1. 100% | 402.4 MiB/s |   4.8 MiB |  00m00s
[ 94/192] Installing openssl-libs-1:4.0 100% | 394.0 MiB/s |   6.7 MiB |  00m00s
[ 95/192] Installing coreutils-0:9.12-1 100% | 167.2 MiB/s |   6.4 MiB |  00m00s
[ 96/192] Installing ca-certificates-0: 100% |   2.3 MiB/s |   2.5 MiB |  00m01s
[ 97/192] Installing gzip-0:1.14-4.fc46 100% |  19.3 MiB/s | 415.1 KiB |  00m00s
[ 98/192] Installing util-linux-0:2.42. 100% |  91.6 MiB/s |   3.8 MiB |  00m00s
[ 99/192] Installing policycoreutils-0: 100% |  29.6 MiB/s | 910.5 KiB |  00m00s
[100/192] Installing selinux-policy-0:4 100% |   1.7 MiB/s |  34.5 KiB |  00m00s
[101/192] Installing selinux-policy-tar 100% | 210.4 MiB/s |  15.2 MiB |  00m00s
[102/192] Installing libfsverity-0:1.7- 100% |  24.8 MiB/s |  25.4 KiB |  00m00s
[103/192] Installing rpm-sequoia-0:1.10 100% | 349.6 MiB/s |   2.4 MiB |  00m00s
[104/192] Installing libevent-0:2.1.13- 100% | 320.5 MiB/s | 984.5 KiB |  00m00s
[105/192] Installing ngtcp2-crypto-ossl 100% |  51.3 MiB/s |  52.5 KiB |  00m00s
[106/192] Installing libusb1-0:1.0.30-2 100% |  14.8 MiB/s | 181.8 KiB |  00m00s
>>> Running sysusers scriptlet: tpm2-tss-0:4.2.0-1.fc46.x86_64
>>> Finished sysusers scriptlet: tpm2-tss-0:4.2.0-1.fc46.x86_64
>>> Scriptlet output:
>>> Creating group 'tss' with GID 59.
>>> Creating user 'tss' (Account used for TPM access) with UID 59 and GID 59.
>>> 
[107/192] Installing tpm2-tss-0:4.2.0-1 100% | 281.1 MiB/s |   1.7 MiB |  00m00s
[108/192] Installing gnupg2-gpg-agent-0 100% |  27.6 MiB/s | 733.7 KiB |  00m00s
[109/192] Installing ima-evm-utils-libs 100% |  56.4 MiB/s |  57.7 KiB |  00m00s
[110/192] Installing nettle-0:4.0-5.fc4 100% | 262.0 MiB/s | 805.0 KiB |  00m00s
[111/192] Installing gnutls-0:3.8.13-5. 100% | 348.9 MiB/s |   3.8 MiB |  00m00s
[112/192] Installing zstd-0:1.5.7-6.fc4 100% |  25.5 MiB/s | 495.2 KiB |  00m00s
[113/192] Installing libxml2-0:2.15.4-1 100% |  75.2 MiB/s |   1.7 MiB |  00m00s
[114/192] Installing bzip2-0:1.0.8-24.f 100% |   5.2 MiB/s |  95.1 KiB |  00m00s
[115/192] Installing add-determinism-0: 100% |  98.1 MiB/s |   2.2 MiB |  00m00s
[116/192] Installing build-reproducibil 100% |   0.0   B/s |   1.5 KiB |  00m00s
[117/192] Installing filesystem-srpm-ma 100% |   0.0   B/s |  38.9 KiB |  00m00s
[118/192] Installing ed-0:1.22.6-1.fc46 100% |   9.7 MiB/s | 169.2 KiB |  00m00s
[119/192] Installing patch-0:2.8-6.fc46 100% |  12.4 MiB/s | 228.1 KiB |  00m00s
[120/192] Installing cpio-0:2.15-10.fc4 100% |  56.7 MiB/s |   1.1 MiB |  00m00s
[121/192] Installing libpfm-0:4.13.0-23 100% | 432.1 MiB/s |   1.7 MiB |  00m00s
[122/192] Installing libgomp-0:16.2.1-2 100% | 282.7 MiB/s | 578.9 KiB |  00m00s
[123/192] Installing libtool-ltdl-0:2.6 100% |   0.0   B/s |  71.1 KiB |  00m00s
[124/192] Installing libpkgconf-0:2.5.1 100% |  84.9 MiB/s |  87.0 KiB |  00m00s
[125/192] Installing pkgconf-0:2.5.1-2. 100% |   5.6 MiB/s |  97.3 KiB |  00m00s
[126/192] Installing pkgconf-pkg-config 100% | 104.3 KiB/s |   1.8 KiB |  00m00s
[127/192] Installing lz4-libs-0:1.10.0- 100% | 170.0 MiB/s | 174.0 KiB |  00m00s
[128/192] Installing libarchive-0:3.8.9 100% | 327.4 MiB/s |   1.0 MiB |  00m00s
[129/192] Installing gdbm-libs-1:1.23-1 100% | 132.2 MiB/s | 135.4 KiB |  00m00s
[130/192] Installing cyrus-sasl-lib-0:2 100% | 101.7 MiB/s |   2.3 MiB |  00m00s
[131/192] Installing openldap-0:2.6.14- 100% | 222.2 MiB/s | 682.7 KiB |  00m00s
[132/192] Installing gnupg2-dirmngr-0:2 100% |  25.6 MiB/s | 682.8 KiB |  00m00s
[133/192] Installing gnupg2-0:2.4.9-18. 100% | 190.0 MiB/s |   6.7 MiB |  00m00s
[134/192] Installing gpgverify-0:2.2-5. 100% |   0.0   B/s |   9.4 KiB |  00m00s
[135/192] Installing jansson-0:2.14-5.f 100% | 100.1 MiB/s | 102.5 KiB |  00m00s
[136/192] Installing systemd-standalone 100% |  47.9 MiB/s | 981.8 KiB |  00m00s
[137/192] Installing rpm-libs-0:6.1.0-1 100% | 274.8 MiB/s |   1.1 MiB |  00m00s
[138/192] Installing rpm-sign-libs-0:6. 100% |   0.0   B/s |  40.5 KiB |  00m00s
[139/192] Installing rpm-build-libs-0:6 100% | 282.4 MiB/s | 289.2 KiB |  00m00s
[140/192] Installing xxhash-libs-0:0.8. 100% |  93.1 MiB/s |  95.4 KiB |  00m00s
[141/192] Installing libverto-0:0.3.2-1 100% |   0.0   B/s |  27.1 KiB |  00m00s
[142/192] Installing libcbor-0:0.14.0-3 100% |  82.9 MiB/s |  84.9 KiB |  00m00s
[143/192] Installing libfido2-0:1.17.0- 100% | 252.8 MiB/s | 258.9 KiB |  00m00s
[144/192] Installing libbrotli-0:1.2.0- 100% | 286.2 MiB/s | 879.1 KiB |  00m00s
[145/192] Installing libnghttp2-0:1.69. 100% | 163.3 MiB/s | 167.3 KiB |  00m00s
[146/192] Installing libnghttp3-0:1.18. 100% | 180.7 MiB/s | 185.1 KiB |  00m00s
[147/192] Installing keyutils-libs-0:1. 100% |  50.2 MiB/s |  51.4 KiB |  00m00s
[148/192] Installing libcom_err-0:1.47. 100% |  62.5 MiB/s |  64.0 KiB |  00m00s
[149/192] Installing krb5-libs-0:1.22.2 100% | 298.4 MiB/s |   2.4 MiB |  00m00s
[150/192] Installing libssh-0:0.12.2-1. 100% | 236.9 MiB/s | 727.8 KiB |  00m00s
[151/192] Installing libcurl-0:8.23.0~r 100% | 360.6 MiB/s |   1.1 MiB |  00m00s
[152/192] Installing elfutils-debuginfo 100% |   4.5 MiB/s |  82.2 KiB |  00m00s
[153/192] Installing elfutils-0:0.196-1 100% | 127.1 MiB/s |   3.2 MiB |  00m00s
[154/192] Installing binutils-0:2.47.50 100% | 306.1 MiB/s |  24.5 MiB |  00m00s
[155/192] Installing gdb-minimal-0:17.2 100% | 267.2 MiB/s |  14.2 MiB |  00m00s
[156/192] Installing debugedit-0:5.3-3. 100% |  12.1 MiB/s | 223.6 KiB |  00m00s
[157/192] Installing curl-0:8.23.0~rc2- 100% |  17.7 MiB/s | 488.2 KiB |  00m00s
[158/192] Installing rpm-0:6.1.0-1.fc46 100% |  69.5 MiB/s |   2.5 MiB |  00m00s
[159/192] Installing cmake-srpm-macros- 100% |   0.0   B/s | 804.0   B |  00m00s
[160/192] Installing efi-srpm-macros-0: 100% |   8.1 MiB/s |  41.3 KiB |  00m00s
[161/192] Installing java-srpm-macros-0 100% |   0.0   B/s |   1.1 KiB |  00m00s
[162/192] Installing lua-srpm-macros-0: 100% |   0.0   B/s |   1.9 KiB |  00m00s
[163/192] Installing tree-sitter-srpm-m 100% |   0.0   B/s |   9.6 KiB |  00m00s
[164/192] Installing zig-srpm-macros-0: 100% |   0.0   B/s |   1.9 KiB |  00m00s
[165/192] Installing rust-srpm-macros-0 100% |   0.0   B/s |   6.4 KiB |  00m00s
[166/192] Installing qt6-srpm-macros-0: 100% |   0.0   B/s | 748.0   B |  00m00s
[167/192] Installing qt5-srpm-macros-0: 100% |   0.0   B/s | 776.0   B |  00m00s
[168/192] Installing perl-srpm-macros-0 100% |   0.0   B/s |   1.1 KiB |  00m00s
[169/192] Installing package-notes-srpm 100% |   0.0   B/s |   2.1 KiB |  00m00s
[170/192] Installing openblas-srpm-macr 100% |   0.0   B/s | 392.0   B |  00m00s
[171/192] Installing ocaml-srpm-macros- 100% |   0.0   B/s |   2.1 KiB |  00m00s
[172/192] Installing meson-srpm-macros- 100% |   0.0   B/s |   1.9 KiB |  00m00s
[173/192] Installing kernel-srpm-macros 100% |   0.0   B/s |   2.3 KiB |  00m00s
[174/192] Installing gnome-srpm-macros- 100% |   0.0   B/s |   4.1 KiB |  00m00s
[175/192] Installing gnat-srpm-macros-0 100% |   0.0   B/s |   1.3 KiB |  00m00s
[176/192] Installing ghc-srpm-macros-0: 100% |   0.0   B/s |   1.0 KiB |  00m00s
[177/192] Installing gap-srpm-macros-0: 100% |   0.0   B/s |   2.7 KiB |  00m00s
[178/192] Installing fpc-srpm-macros-0: 100% |   0.0   B/s | 420.0   B |  00m00s
[179/192] Installing ansible-srpm-macro 100% |   0.0   B/s |  36.2 KiB |  00m00s
[180/192] Installing redhat-rpm-config- 100% | 185.9 MiB/s | 190.4 KiB |  00m00s
[181/192] Installing forge-srpm-macros- 100% |  39.3 MiB/s |  40.3 KiB |  00m00s
[182/192] Installing rpm-build-0:6.1.0- 100% |  15.7 MiB/s | 322.1 KiB |  00m00s
[183/192] Installing erlang-srpm-macros 100% |   0.0   B/s |   2.5 KiB |  00m00s
[184/192] Installing pyproject-srpm-mac 100% |   0.0   B/s |   4.0 KiB |  00m00s
[185/192] Installing fonts-srpm-macros- 100% |   0.0   B/s |  57.0 KiB |  00m00s
[186/192] Installing go-srpm-macros-0:3 100% |   0.0   B/s |  63.0 KiB |  00m00s
[187/192] Installing R-srpm-macros-0:1. 100% |   0.0   B/s |   4.4 KiB |  00m00s
[188/192] Installing python-srpm-macros 100% |   0.0   B/s |  52.9 KiB |  00m00s
[189/192] Installing rpm-plugin-selinux 100% |   0.0   B/s |  12.9 KiB |  00m00s
[190/192] Installing which-0:2.25-2.fc4 100% |   4.4 MiB/s |  81.2 KiB |  00m00s
[191/192] Installing shadow-utils-2:4.2 100% | 123.3 MiB/s |   4.1 MiB |  00m00s
[192/192] Installing info-0:7.3-3.fc46. 100% |  58.4 KiB/s | 396.0 KiB |  00m07s
Warning: skipped OpenPGP checks for 58 packages from repository: copr_base
Complete!
Updating and loading repositories:
 fedora                                 100% | 117.7 KiB/s |  24.5 KiB |  00m00s
 Additional repo copr_tstellar_fedora_c 100% |  11.4 KiB/s |   1.5 KiB |  00m00s
 Additional repo copr_fedora_llvm_team_ 100% |  11.5 KiB/s |   1.5 KiB |  00m00s
 Copr repository                        100% |  11.3 KiB/s |   1.5 KiB |  00m00s
Repositories loaded.
Package                    Arch   Version                                     Repository                                                   Size
Installing:
 fedora-clang-default-cc   noarch 0:1-1.fc43                                  copr_tstellar_fedora_clang_default_cc                    17.0   B
Installing dependencies:
 annobin-docs              noarch 0:13.32-1.fc46                              fedora                                                   99.7 KiB
 annobin-plugin-gcc        x86_64 0:13.32-1.fc46                              fedora                                                  724.5 KiB
 clang                     x86_64 0:24.0.0~pre20260928.g6909c17f146832-6.fc46 copr_fedora_llvm_team_llvm_snapshots_big_merge_20260928  70.5 MiB
 clang-libs                x86_64 0:24.0.0~pre20260928.g6909c17f146832-6.fc46 copr_fedora_llvm_team_llvm_snapshots_big_merge_20260928 112.2 MiB
 clang-resource-filesystem x86_64 0:24.0.0~pre20260928.g6909c17f146832-6.fc46 copr_fedora_llvm_team_llvm_snapshots_big_merge_20260928  15.3 KiB
 compiler-rt               x86_64 0:24.0.0~pre20260928.g6909c17f146832-6.fc46 copr_fedora_llvm_team_llvm_snapshots_big_merge_20260928  44.1 MiB
 cpp                       x86_64 0:16.2.1-2.fc46.1                           fedora                                                   42.6 MiB
 expat                     x86_64 0:2.8.3-1.fc46                              copr_base                                               342.1 KiB
 gcc                       x86_64 0:16.2.1-2.fc46.1                           fedora                                                  121.8 MiB
 gcc-c++                   x86_64 0:16.2.1-2.fc46.1                           fedora                                                   46.8 MiB
 gcc-plugin-annobin        x86_64 0:16.2.1-2.fc46.1                           fedora                                                   57.1 KiB
 glibc-devel               x86_64 0:2.44.9000-4.fc46                          fedora                                                    2.3 MiB
 kernel-headers            x86_64 0:7.3.0-0.rc5.45.fc46                       fedora                                                    7.1 MiB
 libatomic                 x86_64 0:16.2.1-2.fc46.1                           fedora                                                   45.6 KiB
 libedit                   x86_64 0:3.1-60.20260512cvs.fc46                   copr_base                                               256.8 KiB
 libmpc                    x86_64 0:1.4.1-2.fc46                              copr_base                                               164.7 KiB
 libomp                    x86_64 0:24.0.0~pre20260928.g6909c17f146832-6.fc46 copr_fedora_llvm_team_llvm_snapshots_big_merge_20260928   3.3 MiB
 libstdc++-devel           x86_64 0:16.2.1-2.fc46.1                           fedora                                                   41.2 MiB
 libxcrypt-devel           x86_64 0:4.5.2-4.fc45                              fedora                                                   31.0 KiB
 lld                       x86_64 0:24.0.0~pre20260928.g6909c17f146832-6.fc46 copr_fedora_llvm_team_llvm_snapshots_big_merge_20260928  42.8 KiB
 lld-libs                  x86_64 0:24.0.0~pre20260928.g6909c17f146832-6.fc46 copr_fedora_llvm_team_llvm_snapshots_big_merge_20260928   6.3 MiB
 llvm                      x86_64 0:24.0.0~pre20260928.g6909c17f146832-6.fc46 copr_fedora_llvm_team_llvm_snapshots_big_merge_20260928 135.7 MiB
 llvm-filesystem           x86_64 0:24.0.0~pre20260928.g6909c17f146832-6.fc46 copr_fedora_llvm_team_llvm_snapshots_big_merge_20260928   0.0   B
 llvm-libs                 x86_64 0:24.0.0~pre20260928.g6909c17f146832-6.fc46 copr_fedora_llvm_team_llvm_snapshots_big_merge_20260928 150.9 MiB
 make                      x86_64 1:4.4.1-13.fc46                             copr_base                                                 1.8 MiB
 mpdecimal                 x86_64 0:4.0.1-4.fc46                              copr_base                                               249.0 KiB
 python-pip-wheel          noarch 0:26.2.1-1.fc46                             fedora                                                    1.3 MiB
 python3                   x86_64 0:3.15.0~rc2-1.fc46                         fedora                                                   28.7 KiB
 python3-libs              x86_64 0:3.15.0~rc2-1.fc46                         fedora                                                   48.2 MiB
 tzdata                    noarch 0:2026c-2.fc46                              fedora                                                    1.2 MiB

Transaction Summary:
 Installing:        31 packages

Total size of inbound packages is 215 MiB. Need to download 215 MiB.
After this operation, 839 MiB extra will be used (install 839 MiB, remove 0 B).
[ 1/31] fedora-clang-default-cc-0:1-1.f 100% |   3.6 MiB/s |   7.5 KiB |  00m00s
[ 2/31] clang-0:24.0.0~pre20260928.g690 100% |  29.2 MiB/s |   7.7 MiB |  00m00s
[ 3/31] clang-resource-filesystem-0:24. 100% | 114.7 KiB/s |  19.4 KiB |  00m00s
[ 4/31] llvm-libs-0:24.0.0~pre20260928. 100% |  71.1 MiB/s |  37.3 MiB |  00m01s
[ 5/31] clang-libs-0:24.0.0~pre20260928 100% |  51.9 MiB/s |  28.9 MiB |  00m01s
[ 6/31] llvm-filesystem-0:24.0.0~pre202 100% | 108.3 KiB/s |  13.5 KiB |  00m00s
[ 7/31] libomp-0:24.0.0~pre20260928.g69 100% |   8.1 MiB/s | 972.8 KiB |  00m00s
[ 8/31] lld-0:24.0.0~pre20260928.g6909c 100% | 191.1 KiB/s |  39.0 KiB |  00m00s
[ 9/31] compiler-rt-0:24.0.0~pre2026092 100% |  14.0 MiB/s |   3.1 MiB |  00m00s
[10/31] libedit-0:3.1-60.20260512cvs.fc 100% |  21.1 MiB/s | 107.9 KiB |  00m00s
[11/31] python3-0:3.15.0~rc2-1.fc46.x86 100% |  13.4 MiB/s |  27.5 KiB |  00m00s
[12/31] lld-libs-0:24.0.0~pre20260928.g 100% |  10.7 MiB/s |   1.8 MiB |  00m00s
[13/31] python-pip-wheel-0:26.2.1-1.fc4 100% |  91.7 MiB/s |   1.2 MiB |  00m00s
[14/31] python3-libs-0:3.15.0~rc2-1.fc4 100% | 224.2 MiB/s |  11.2 MiB |  00m00s
[15/31] gcc-c++-0:16.2.1-2.fc46.1.x86_6 100% | 188.1 MiB/s |  17.3 MiB |  00m00s
[16/31] llvm-0:24.0.0~pre20260928.g6909 100% |  67.9 MiB/s |  36.7 MiB |  00m01s
[17/31] libstdc++-devel-0:16.2.1-2.fc46 100% |  66.4 MiB/s |   6.0 MiB |  00m00s
[18/31] cpp-0:16.2.1-2.fc46.1.x86_64    100% | 102.8 MiB/s |  14.6 MiB |  00m00s
[19/31] expat-0:2.8.3-1.fc46.x86_64     100% |   8.1 MiB/s | 133.1 KiB |  00m00s
[20/31] mpdecimal-0:4.0.1-4.fc46.x86_64 100% |  25.8 MiB/s | 105.6 KiB |  00m00s
[21/31] libmpc-0:1.4.1-2.fc46.x86_64    100% |  35.3 MiB/s |  72.2 KiB |  00m00s
[22/31] tzdata-0:2026c-2.fc46.noarch    100% |  31.6 MiB/s | 712.1 KiB |  00m00s
[23/31] gcc-0:16.2.1-2.fc46.1.x86_64    100% | 160.2 MiB/s |  43.3 MiB |  00m00s
[24/31] glibc-devel-0:2.44.9000-4.fc46. 100% |  10.6 MiB/s | 675.3 KiB |  00m00s
[25/31] libxcrypt-devel-0:4.5.2-4.fc45. 100% | 661.5 KiB/s |  30.4 KiB |  00m00s
[26/31] libatomic-0:16.2.1-2.fc46.1.x86 100% |  27.2 MiB/s |  55.7 KiB |  00m00s
[27/31] make-1:4.4.1-13.fc46.x86_64     100% | 113.3 MiB/s | 580.0 KiB |  00m00s
[28/31] kernel-headers-0:7.3.0-0.rc5.45 100% | 252.0 MiB/s |   1.8 MiB |  00m00s
[29/31] annobin-plugin-gcc-0:13.32-1.fc 100% |  86.7 MiB/s | 710.1 KiB |  00m00s
[30/31] gcc-plugin-annobin-0:16.2.1-2.f 100% |  19.4 MiB/s |  59.5 KiB |  00m00s
[31/31] annobin-docs-0:13.32-1.fc46.noa 100% |  42.5 MiB/s |  87.1 KiB |  00m00s
--------------------------------------------------------------------------------
[31/31] Total                           100% | 169.6 MiB/s | 215.2 MiB |  00m01s
Running transaction
[ 1/33] Verify package files            100% |  35.0   B/s |  31.0   B |  00m01s
[ 2/33] Prepare transaction             100% | 688.0   B/s |  31.0   B |  00m00s
[ 3/33] Installing libmpc-0:1.4.1-2.fc4 100% |  54.2 MiB/s | 166.4 KiB |  00m00s
[ 4/33] Installing libstdc++-devel-0:16 100% | 464.4 MiB/s |  41.3 MiB |  00m00s
[ 5/33] Installing clang-resource-files 100% |  16.3 MiB/s |  16.7 KiB |  00m00s
[ 6/33] Installing cpp-0:16.2.1-2.fc46. 100% | 335.4 MiB/s |  42.6 MiB |  00m00s
[ 7/33] Installing annobin-docs-0:13.32 100% |  32.8 MiB/s | 100.8 KiB |  00m00s
[ 8/33] Installing kernel-headers-0:7.3 100% | 218.7 MiB/s |   7.2 MiB |  00m00s
[ 9/33] Installing glibc-devel-0:2.44.9 100% | 184.5 MiB/s |   2.4 MiB |  00m00s
[10/33] Installing libxcrypt-devel-0:4. 100% |  32.5 MiB/s |  33.3 KiB |  00m00s
[11/33] Installing make-1:4.4.1-13.fc46 100% |  79.0 MiB/s |   1.8 MiB |  00m00s
[12/33] Installing libatomic-0:16.2.1-2 100% |  45.6 MiB/s |  46.7 KiB |  00m00s
[13/33] Installing gcc-0:16.2.1-2.fc46. 100% | 392.0 MiB/s | 121.9 MiB |  00m00s
[14/33] Installing gcc-c++-0:16.2.1-2.f 100% | 332.2 MiB/s |  46.8 MiB |  00m00s
[15/33] Installing tzdata-0:2026c-2.fc4 100% |  53.7 MiB/s |   1.5 MiB |  00m00s
[16/33] Installing mpdecimal-0:4.0.1-4. 100% | 244.7 MiB/s | 250.5 KiB |  00m00s
[17/33] Installing expat-0:2.8.3-1.fc46 100% |  17.7 MiB/s | 344.2 KiB |  00m00s
[18/33] Installing python-pip-wheel-0:2 100% | 181.2 MiB/s |   1.3 MiB |  00m00s
[19/33] Installing python3-libs-0:3.15. 100% | 352.4 MiB/s |  48.6 MiB |  00m00s
[20/33] Installing python3-0:3.15.0~rc2 100% |   1.7 MiB/s |  30.5 KiB |  00m00s
[21/33] Installing compiler-rt-0:24.0.0 100% | 657.8 MiB/s |  44.1 MiB |  00m00s
[22/33] Installing libedit-0:3.1-60.202 100% | 252.4 MiB/s | 258.5 KiB |  00m00s
[23/33] Installing llvm-filesystem-0:24 100% |   0.0   B/s |   1.1 KiB |  00m00s
[24/33] Installing llvm-libs-0:24.0.0~p 100% | 445.1 MiB/s | 150.9 MiB |  00m00s
[25/33] Installing clang-libs-0:24.0.0~ 100% | 447.1 MiB/s | 112.2 MiB |  00m00s
[26/33] Installing clang-0:24.0.0~pre20 100% | 555.3 MiB/s |  70.5 MiB |  00m00s
[27/33] Installing llvm-0:24.0.0~pre202 100% | 401.6 MiB/s | 135.7 MiB |  00m00s
[28/33] Installing libomp-0:24.0.0~pre2 100% | 369.0 MiB/s |   3.3 MiB |  00m00s
[29/33] Installing lld-libs-0:24.0.0~pr 100% | 418.5 MiB/s |   6.3 MiB |  00m00s
[30/33] Installing lld-0:24.0.0~pre2026 100% |   1.8 MiB/s |  45.9 KiB |  00m00s
[31/33] Installing fedora-clang-default 100% |   0.0   B/s | 288.0   B |  00m00s
[32/33] Installing annobin-plugin-gcc-0 100% |  59.1 MiB/s | 726.2 KiB |  00m00s
[33/33] Installing gcc-plugin-annobin-0 100% | 543.3 KiB/s |  58.7 KiB |  00m00s
Warning: skipped OpenPGP checks for 16 packages from repositories: copr_base, copr_fedora_llvm_team_llvm_snapshots_big_merge_20260928, copr_tstellar_fedora_clang_default_cc
Complete!
Finish: installing minimal buildroot with dnf5
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: R-srpm-macros-1.3.7-3.fc45.noarch
add-determinism-0.7.3-3.fc45.x86_64
alternatives-1.33-6.fc46.x86_64
annobin-docs-13.32-1.fc46.noarch
annobin-plugin-gcc-13.32-1.fc46.x86_64
ansible-srpm-macros-1-22.fc45.noarch
audit-libs-4.2.1-2.fc45.x86_64
bash-5.3.15-2.fc46.x86_64
binutils-2.47.50-12.fc46.x86_64
build-reproducibility-srpm-macros-0.7.3-3.fc45.noarch
bzip2-1.0.8-24.fc46.x86_64
bzip2-libs-1.0.8-24.fc46.x86_64
ca-certificates-2026.2.90_v9.0.317-1.fc46.noarch
clang-24.0.0~pre20260928.g6909c17f146832-6.fc46.x86_64
clang-libs-24.0.0~pre20260928.g6909c17f146832-6.fc46.x86_64
clang-resource-filesystem-24.0.0~pre20260928.g6909c17f146832-6.fc46.x86_64
cmake-srpm-macros-4.3.0-5.fc45.noarch
compiler-rt-24.0.0~pre20260928.g6909c17f146832-6.fc46.x86_64
coreutils-9.12-1.fc46.x86_64
coreutils-common-9.12-1.fc46.x86_64
cpio-2.15-10.fc46.x86_64
cpp-16.2.1-2.fc46.1.x86_64
crypto-policies-20260713-2.gitc42da77.fc45.noarch
curl-8.23.0~rc2-1.fc46.x86_64
cyrus-sasl-lib-2.1.28-37.fc45.x86_64
debugedit-5.3-3.fc46.x86_64
diffutils-3.12-6.fc45.x86_64
dwz-0.17-3.fc45.x86_64
ed-1.22.6-1.fc46.x86_64
efi-srpm-macros-6-9.fc45.noarch
elfutils-0.196-1.fc46.x86_64
elfutils-debuginfod-client-0.196-1.fc46.x86_64
elfutils-libelf-0.196-1.fc46.x86_64
elfutils-libs-0.196-1.fc46.x86_64
erlang-srpm-macros-0.3.11-2.fc45.noarch
expat-2.8.3-1.fc46.x86_64
fedora-clang-default-cc-1-1.fc43.noarch
fedora-gpg-keys-46-0.3.noarch
fedora-release-46-0.1.noarch
fedora-release-common-46-0.1.noarch
fedora-release-identity-basic-46-0.1.noarch
fedora-repos-46-0.3.noarch
fedora-repos-rawhide-46-0.3.noarch
file-5.48-3.fc46.x86_64
file-libs-5.48-3.fc46.x86_64
filesystem-3.18-59.fc45.x86_64
filesystem-srpm-macros-3.18-59.fc45.noarch
findutils-4.11.0-2.fc46.x86_64
fips-provider-1.5.3-1.fc46.x86_64
fonts-srpm-macros-5.0.0-4.fc45.noarch
forge-srpm-macros-0.4.0-5.fc45.noarch
fpc-srpm-macros-1.3-17.fc45.noarch
gap-srpm-macros-2-3.fc45.noarch
gawk-5.4.1-1.fc46.x86_64
gcc-16.2.1-2.fc46.1.x86_64
gcc-c++-16.2.1-2.fc46.1.x86_64
gcc-plugin-annobin-16.2.1-2.fc46.1.x86_64
gdb-minimal-17.2-6.fc46.x86_64
gdbm-libs-1.23-12.fc46.x86_64
ghc-srpm-macros-1.10-2.fc45.noarch
glibc-2.44.9000-4.fc46.x86_64
glibc-common-2.44.9000-4.fc46.x86_64
glibc-devel-2.44.9000-4.fc46.x86_64
glibc-gconv-extra-2.44.9000-4.fc46.x86_64
glibc-minimal-langpack-2.44.9000-4.fc46.x86_64
gmp-6.3.0-6.fc45.x86_64
gnat-srpm-macros-7-3.fc45.noarch
gnome-srpm-macros-1.0-2.fc45.noarch
gnulib-l10n-20241231-4.fc46.noarch
gnupg2-2.4.9-18.fc46.x86_64
gnupg2-dirmngr-2.4.9-18.fc46.x86_64
gnupg2-gpg-agent-2.4.9-18.fc46.x86_64
gnupg2-gpgconf-2.4.9-18.fc46.x86_64
gnupg2-keyboxd-2.4.9-18.fc46.x86_64
gnupg2-verify-2.4.9-18.fc46.x86_64
gnutls-3.8.13-5.fc46.x86_64
go-srpm-macros-3.8.0-3.fc45.noarch
gpg-pubkey-4f50a6114cd5c6976a7f1179655a4b02f577861e-6888bc98
gpg-pubkey-b2e766fa50ca6fa2d5ed06fc09d879e09488fb64-6a6b46b4
gpg-pubkey-d924b10d3e810dabdd8b56b596e7e91491211fce-697c9899
gpgverify-2.2-5.fc45.noarch
grep-3.12-4.fc45.x86_64
gzip-1.14-4.fc46.x86_64
ima-evm-utils-libs-1.6.2-12.fc46.x86_64
info-7.3-3.fc46.x86_64
jansson-2.14-5.fc46.x86_64
java-srpm-macros-1-9.fc45.noarch
json-c-0.18-9.fc46.x86_64
kernel-headers-7.3.0-0.rc5.45.fc46.x86_64
kernel-srpm-macros-1.0-30.fc45.noarch
keyutils-libs-1.6.3-8.fc46.x86_64
krb5-libs-1.22.2-9.fc45.x86_64
libacl-2.4.0-2.fc45.x86_64
libarchive-3.8.9-2.fc46.x86_64
libassuan-2.5.7-6.fc46.x86_64
libatomic-16.2.1-2.fc46.1.x86_64
libattr-2.6.0-2.fc46.x86_64
libblkid-2.42.4-2.fc46.x86_64
libbrotli-1.2.0-6.fc46.x86_64
libcap-2.78-2.fc45.x86_64
libcap-ng-0.9.6-1.fc46.x86_64
libcbor-0.14.0-3.fc45.x86_64
libcom_err-1.47.4-2.fc46.x86_64
libcurl-8.23.0~rc2-1.fc46.x86_64
libeconf-0.7.9-4.fc46.x86_64
libedit-3.1-60.20260512cvs.fc46.x86_64
libevent-2.1.13-1.fc46.x86_64
libfdisk-2.42.4-2.fc46.x86_64
libffi-3.8.0-1.fc46.x86_64
libfido2-1.17.0-5.fc46.x86_64
libfsverity-1.7-4.fc45.x86_64
libgcc-16.2.1-2.fc46.1.x86_64
libgcrypt-1.12.4-1.fc46.x86_64
libgomp-16.2.1-2.fc46.1.x86_64
libgpg-error-1.61-2.fc46.x86_64
libidn2-2.3.8-4.fc46.x86_64
libksba-1.8.1-1.fc46.x86_64
liblastlog2-2.42.4-2.fc46.x86_64
libmount-2.42.4-2.fc46.x86_64
libmpc-1.4.1-2.fc46.x86_64
libnghttp2-1.69.0-6.fc46.x86_64
libnghttp3-1.18.0-1.fc46.x86_64
libomp-24.0.0~pre20260928.g6909c17f146832-6.fc46.x86_64
libpfm-4.13.0-23.fc45.x86_64
libpkgconf-2.5.1-2.fc46.x86_64
libpsl-0.23.3-1.fc46.x86_64
libselinux-3.11-5.fc46.x86_64
libselinux-utils-3.11-5.fc46.x86_64
libsemanage-3.11-4.fc46.x86_64
libsepol-3.11-2.fc46.x86_64
libsmartcols-2.42.4-2.fc46.x86_64
libssh-0.12.2-1.fc45.x86_64
libssh-config-0.12.2-1.fc45.noarch
libstdc++-16.2.1-2.fc46.1.x86_64
libstdc++-devel-16.2.1-2.fc46.1.x86_64
libtasn1-4.21.0-2.fc46.x86_64
libtool-ltdl-2.6.2-1.fc46.x86_64
libunistring-1.1-12.fc46.x86_64
libusb1-1.0.30-2.fc45.x86_64
libuuid-2.42.4-2.fc46.x86_64
libverto-0.3.2-13.fc45.x86_64
libxcrypt-4.5.2-4.fc45.x86_64
libxcrypt-devel-4.5.2-4.fc45.x86_64
libxml2-2.15.4-1.fc46.x86_64
libzstd-1.5.7-6.fc46.x86_64
linkdupes-0.7.3-3.fc45.x86_64
lld-24.0.0~pre20260928.g6909c17f146832-6.fc46.x86_64
lld-libs-24.0.0~pre20260928.g6909c17f146832-6.fc46.x86_64
llvm-24.0.0~pre20260928.g6909c17f146832-6.fc46.x86_64
llvm-filesystem-24.0.0~pre20260928.g6909c17f146832-6.fc46.x86_64
llvm-libs-24.0.0~pre20260928.g6909c17f146832-6.fc46.x86_64
lua-libs-5.5.1-2.fc46.x86_64
lua-srpm-macros-1-18.fc45.noarch
lz4-libs-1.10.0-5.fc46.x86_64
make-4.4.1-13.fc46.x86_64
meson-srpm-macros-1.12.1-2.fc46.noarch
mpdecimal-4.0.1-4.fc46.x86_64
mpfr-4.2.2-4.fc45.x86_64
ncurses-base-6.6-3.fc46.noarch
ncurses-libs-6.6-3.fc46.x86_64
nettle-4.0-5.fc45.x86_64
ngtcp2-1.22.1-3.fc45.x86_64
ngtcp2-crypto-ossl-1.22.1-3.fc45.x86_64
npth-1.8-5.fc46.x86_64
ocaml-srpm-macros-11-4.fc45.noarch
openblas-srpm-macros-2-22.fc45.noarch
openldap-2.6.14-1.fc46.x86_64
openssl-libs-4.0.3-1.fc46.x86_64
p11-kit-0.26.5-1.fc46.x86_64
p11-kit-trust-0.26.5-1.fc46.x86_64
package-notes-srpm-macros-0.20-2.fc45.noarch
pam-libs-1.7.2-4.fc46.x86_64
patch-2.8-6.fc46.x86_64
pcre2-10.47-1.fc46.2.x86_64
pcre2-syntax-10.47-1.fc46.2.noarch
perl-srpm-macros-1-65.fc45.noarch
pkgconf-2.5.1-2.fc46.x86_64
pkgconf-m4-2.5.1-2.fc46.noarch
pkgconf-pkg-config-2.5.1-2.fc46.x86_64
policycoreutils-3.11-2.fc46.x86_64
popt-1.19-11.fc46.x86_64
publicsuffix-list-dafsa-20260624-2.fc45.noarch
pyproject-srpm-macros-1.23.2-1.fc45.noarch
python-pip-wheel-26.2.1-1.fc46.noarch
python-srpm-macros-3.15-2.fc45.noarch
python3-3.15.0~rc2-1.fc46.x86_64
python3-libs-3.15.0~rc2-1.fc46.x86_64
qt5-srpm-macros-5.15.18-3.fc45.noarch
qt6-srpm-macros-6.11.2-1.fc46.noarch
readline-8.3-6.fc46.x86_64
redhat-rpm-config-345-4.fc46.noarch
redhat-systemd-presets-102-3.fc45.noarch
redhat-systemd-presets-common-102-3.fc45.noarch
rpm-6.1.0-1.fc46.x86_64
rpm-build-6.1.0-1.fc46.x86_64
rpm-build-libs-6.1.0-1.fc46.x86_64
rpm-libs-6.1.0-1.fc46.x86_64
rpm-plugin-selinux-6.1.0-1.fc46.x86_64
rpm-sequoia-1.10.3-1.fc46.x86_64
rpm-sign-libs-6.1.0-1.fc46.x86_64
rust-srpm-macros-28.5-2.fc45.noarch
sed-4.10-2.fc45.x86_64
selinux-policy-45.20-1.fc46.noarch
selinux-policy-targeted-45.20-1.fc46.noarch
setup-2.15.1-2.fc45.noarch
shadow-utils-4.20.0-1.fc46.x86_64
sqlite-libs-3.53.4-1.fc45.x86_64
systemd-libs-262-3.fc46.x86_64
systemd-standalone-sysusers-262-3.fc46.x86_64
tar-1.35-9.fc45.x86_64
tpm2-tss-4.2.0-1.fc46.x86_64
tree-sitter-srpm-macros-0.4.6-2.fc45.noarch
tzdata-2026c-2.fc46.noarch
unzip-6.0-71.fc45.x86_64
util-linux-2.42.4-2.fc46.x86_64
util-linux-core-2.42.4-2.fc46.x86_64
which-2.25-2.fc46.x86_64
xxhash-libs-0.8.4-1.fc46.x86_64
xz-5.8.4-1.fc46.x86_64
xz-libs-5.8.4-1.fc46.x86_64
zig-srpm-macros-1-9.fc45.noarch
zip-3.0-46.fc45.x86_64
zlib-ng-compat-2.3.3-6.fc46.x86_64
zstd-1.5.7-6.fc46.x86_64
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1784678400
Wrote: /builddir/build/SRPMS/bcftools-1.24-2.fc46.src.rpm
Finish: rpmbuild -bs
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-x86_64-1790841583.496476/root/var/log/dnf5.log
INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz
/bin/tar: Removing leading `/' from member names
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-_xbsrch0/bcftools/bcftools.spec) Config(child) 0 minutes 36 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/bcftools-1.24-2.fc46.src.rpm)  Config(fedora-rawhide-x86_64)
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1790841583.496476/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1790841583.496476/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1790841583.496476/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-6.1.0-1.fc46.x86_64
  rpm-sequoia-1.10.3-1.fc46.x86_64
  dnf5-5.4.6.0-1.fc46.x86_64
  dnf5-plugins-5.4.6.0-1.fc46.x86_64
Finish: chroot init
Start: build phase for bcftools-1.24-2.fc46.src.rpm
Start: build setup for bcftools-1.24-2.fc46.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1784678400
Wrote: /builddir/build/SRPMS/bcftools-1.24-2.fc46.src.rpm
Updating and loading repositories:
 fedora                                 100% |  93.4 KiB/s |  24.5 KiB |  00m00s
 Additional repo copr_tstellar_fedora_c 100% |  14.4 KiB/s |   1.5 KiB |  00m00s
 Additional repo copr_fedora_llvm_team_ 100% |  14.2 KiB/s |   1.5 KiB |  00m00s
 Copr repository                        100% |  14.5 KiB/s |   1.5 KiB |  00m00s
Repositories loaded.
Package "gcc-16.2.1-2.fc46.1.x86_64" is already installed.
Package "make-1:4.4.1-13.fc46.x86_64" is already installed.

Package                   Arch   Version                           Repository      Size
Installing:
 autoconf                 noarch 0:2.73-4.fc45                     fedora       2.9 MiB
 automake                 noarch 0:1.18.1-5.fc45                   fedora       1.8 MiB
 gsl-devel                x86_64 0:2.8-4.fc45                      fedora       1.6 MiB
 htslib-devel             x86_64 0:1.24-1.fc46                     copr_base  466.8 KiB
 htslib-tools             x86_64 0:1.24-1.fc46                     copr_base    3.8 MiB
 perl-ExtUtils-Embed      noarch 0:1.35-527.fc45                   fedora      15.6 KiB
 perl-File-Temp           noarch 1:0.231.200-527.fc45              fedora     163.7 KiB
 perl-FindBin             noarch 0:1.54-527.fc45                   fedora       6.8 KiB
 perl-Getopt-Long         noarch 1:2.58-527.fc45                   fedora     144.5 KiB
 perl-interpreter         x86_64 4:5.44.0-527.fc45                 fedora     119.8 KiB
 zlib-ng-compat-devel     x86_64 0:2.3.3-6.fc46                    copr_base  107.0 KiB
Installing dependencies:
 cmake-filesystem         x86_64 0:4.3.0-5.fc45                    fedora       0.0   B
 emacs-filesystem         x86_64 1:31.1-1.fc46                     fedora       0.0   B
 gettext                  x86_64 0:1.0-4.fc46                      fedora      17.8 MiB
 gettext-common-devel     noarch 0:1.0-4.fc46                      fedora     596.2 KiB
 gettext-devel            x86_64 0:1.0-4.fc46                      fedora       1.4 MiB
 gettext-envsubst         x86_64 0:1.0-4.fc46                      fedora      70.6 KiB
 gettext-libs             x86_64 0:1.0-4.fc46                      fedora       2.3 MiB
 gettext-runtime          x86_64 0:1.0-4.fc46                      fedora     716.1 KiB
 groff-base               x86_64 0:1.24.1-2.fc46                   copr_base    4.4 MiB
 gsl                      x86_64 0:2.8-4.fc45                      fedora       3.5 MiB
 htslib                   x86_64 0:1.24-1.fc46                     copr_base    1.3 MiB
 libtextstyle             x86_64 0:1.0-4.fc46                      fedora     211.4 KiB
 m4                       x86_64 0:1.4.21-3.fc45                   fedora     881.1 KiB
 ncurses                  x86_64 0:6.6-3.fc46                      copr_base  626.6 KiB
 perl-AutoLoader          noarch 0:5.74-527.fc45                   fedora      20.6 KiB
 perl-AutoSplit           noarch 0:5.74-527.fc45                   fedora      23.1 KiB
 perl-B                   x86_64 0:1.92-527.fc45                   fedora     513.5 KiB
 perl-Benchmark           noarch 0:1.27-527.fc45                   fedora      36.4 KiB
 perl-Carp                noarch 0:1.54-527.fc45                   fedora      46.6 KiB
 perl-Class-Struct        noarch 0:0.68-527.fc45                   fedora      25.4 KiB
 perl-Data-Dumper         x86_64 0:2.192-528.fc45                  fedora     115.5 KiB
 perl-Devel-PPPort        x86_64 0:3.73-527.fc45                   fedora     889.7 KiB
 perl-Digest              noarch 0:1.20-527.fc45                   fedora      35.2 KiB
 perl-Digest-MD5          x86_64 0:2.59-527.fc45                   fedora      59.5 KiB
 perl-DynaLoader          x86_64 0:1.57-527.fc45                   fedora      32.1 KiB
 perl-Encode              x86_64 4:3.24-527.fc45                   fedora       4.7 MiB
 perl-Errno               x86_64 0:1.39-527.fc45                   fedora       8.4 KiB
 perl-Exporter            noarch 0:5.79-527.fc45                   fedora      54.2 KiB
 perl-ExtUtils-Command    noarch 2:7.78-527.fc45                   fedora       9.6 KiB
 perl-ExtUtils-Constant   noarch 0:0.25-527.fc45                   fedora      85.9 KiB
 perl-ExtUtils-Install    noarch 0:2.22-527.fc45                   fedora      85.5 KiB
 perl-ExtUtils-MakeMaker  noarch 2:7.78-527.fc45                   fedora     740.0 KiB
 perl-ExtUtils-Manifest   noarch 1:1.75-527.fc45                   fedora      84.8 KiB
 perl-ExtUtils-ParseXS    noarch 1:3.64-1.fc45                     fedora     723.3 KiB
 perl-Fcntl               x86_64 0:1.20-527.fc45                   fedora      44.7 KiB
 perl-File-Basename       noarch 0:2.86-527.fc45                   fedora      14.0 KiB
 perl-File-Compare        noarch 0:1.100.800-527.fc45              fedora       5.6 KiB
 perl-File-Copy           noarch 0:2.43-527.fc45                   fedora      19.6 KiB
 perl-File-Find           noarch 0:1.44-527.fc45                   fedora      42.0 KiB
 perl-File-Path           noarch 0:2.18-527.fc45                   fedora      63.4 KiB
 perl-File-stat           noarch 0:1.15-527.fc45                   fedora      13.7 KiB
 perl-FileHandle          noarch 0:2.05-527.fc45                   fedora       9.4 KiB
 perl-Getopt-Std          noarch 0:1.15-527.fc45                   fedora      12.5 KiB
 perl-HTTP-Tiny           noarch 0:0.096-528.fc45                  fedora     162.4 KiB
 perl-Hash-Util           x86_64 0:0.32-527.fc45                   fedora      54.9 KiB
 perl-Hash-Util-FieldHash x86_64 0:1.27-527.fc45                   fedora      62.5 KiB
 perl-IO                  x86_64 0:1.56-527.fc45                   fedora     147.3 KiB
 perl-IO-Socket-IP        noarch 0:0.44-527.fc45                   fedora     100.5 KiB
 perl-IO-Socket-SSL       noarch 0:2.099-2.fc45                    fedora     726.9 KiB
 perl-IPC-Open3           noarch 0:1.24-527.fc45                   fedora      27.7 KiB
 perl-MIME-Base32         noarch 0:1.303-26.fc45                   fedora      30.7 KiB
 perl-MIME-Base64         x86_64 0:3.16-527.fc45                   fedora      41.9 KiB
 perl-Net-SSLeay          x86_64 0:1.96-5.fc45                     fedora       1.3 MiB
 perl-POSIX               x86_64 0:2.26-527.fc45                   fedora     229.3 KiB
 perl-PathTools           x86_64 0:3.95-527.fc45                   fedora     180.0 KiB
 perl-Pod-Escapes         noarch 1:1.07-527.fc45                   fedora      24.9 KiB
 perl-Pod-Perldoc         noarch 0:3.28.01-527.fc45                fedora     163.8 KiB
 perl-Pod-Simple          noarch 1:3.48-527.fc45                   fedora     565.2 KiB
 perl-Pod-Usage           noarch 4:2.05-527.fc45                   fedora      86.3 KiB
 perl-Scalar-List-Utils   x86_64 5:1.70-527.fc45                   fedora     144.8 KiB
 perl-SelectSaver         noarch 0:1.03-527.fc45                   fedora       2.1 KiB
 perl-Socket              x86_64 4:2.043-1.fc46                    fedora     121.7 KiB
 perl-Storable            x86_64 1:3.41-527.fc45                   fedora     234.9 KiB
 perl-Symbol              noarch 0:1.09-527.fc45                   fedora       6.8 KiB
 perl-Term-ANSIColor      noarch 0:5.01-527.fc45                   fedora      97.5 KiB
 perl-Term-Cap            noarch 0:1.18-527.fc45                   fedora      29.3 KiB
 perl-Test-Harness        noarch 1:3.52-528.fc45                   fedora     560.9 KiB
 perl-Text-ParseWords     noarch 0:3.31-527.fc45                   fedora      13.6 KiB
 perl-Text-Tabs+Wrap      noarch 0:2024.001-527.fc45               fedora      22.6 KiB
 perl-Thread-Queue        noarch 0:3.14-527.fc45                   fedora      28.9 KiB
 perl-Time-HiRes          x86_64 4:1.9780-527.fc45                 fedora     115.6 KiB
 perl-Time-Local          noarch 2:1.350-527.fc45                  fedora      69.0 KiB
 perl-URI                 noarch 0:5.37-1.fc46                     fedora     275.5 KiB
 perl-Unicode-Normalize   x86_64 0:1.32-527.fc45                   fedora     486.1 KiB
 perl-base                noarch 0:2.27-527.fc45                   fedora      12.6 KiB
 perl-constant            noarch 0:1.33-528.fc45                   fedora      26.3 KiB
 perl-devel               x86_64 4:5.44.0-527.fc45                 fedora       4.1 MiB
 perl-fields              noarch 0:2.27-527.fc45                   fedora      11.9 KiB
 perl-if                  noarch 0:0.61.000-527.fc45               fedora       5.8 KiB
 perl-lib                 x86_64 0:0.65-527.fc45                   fedora       8.5 KiB
 perl-libnet              noarch 0:3.15-528.fc45                   fedora     288.4 KiB
 perl-libs                x86_64 4:5.44.0-527.fc45                 fedora      12.0 MiB
 perl-locale              noarch 0:1.13-527.fc45                   fedora       6.1 KiB
 perl-mro                 x86_64 0:1.30-527.fc45                   fedora      41.4 KiB
 perl-overload            noarch 0:1.40-527.fc45                   fedora      71.6 KiB
 perl-overloading         noarch 0:0.03-527.fc45                   fedora       4.8 KiB
 perl-parent              noarch 1:0.244-527.fc45                  fedora      10.3 KiB
 perl-podlators           noarch 1:6.1.1-1.fc46                    fedora     327.2 KiB
 perl-threads             x86_64 1:2.45-527.fc45                   fedora     110.8 KiB
 perl-threads-shared      x86_64 0:1.73-527.fc45                   fedora      79.5 KiB
 perl-vars                noarch 0:1.05-527.fc45                   fedora       3.9 KiB
 perl-version             x86_64 9:0.99.34-527.fc45                fedora     132.7 KiB
 python3-pyparsing        noarch 0:3.1.2-19.fc46                   fedora       1.0 MiB
 systemtap-sdt-devel      x86_64 0:5.6~pre17846435g2da140e3-4.fc46 fedora     189.2 KiB
 systemtap-sdt-dtrace     x86_64 0:5.6~pre17846435g2da140e3-4.fc46 fedora     185.8 KiB

Transaction Summary:
 Installing:       106 packages

Total size of inbound packages is 20 MiB. Need to download 20 MiB.
After this operation, 78 MiB extra will be used (install 78 MiB, remove 0 B).
[  1/106] perl-File-Temp-1:0.231.200-52 100% |  14.5 MiB/s |  59.3 KiB |  00m00s
[  2/106] autoconf-0:2.73-4.fc45.noarch 100% |  75.3 MiB/s | 848.1 KiB |  00m00s
[  3/106] perl-Getopt-Long-1:2.58-527.f 100% |  15.4 MiB/s |  63.2 KiB |  00m00s
[  4/106] automake-0:1.18.1-5.fc45.noar 100% |  54.4 MiB/s | 723.9 KiB |  00m00s
[  5/106] gsl-devel-0:2.8-4.fc45.x86_64 100% |  91.4 MiB/s | 655.1 KiB |  00m00s
[  6/106] perl-ExtUtils-Embed-0:1.35-52 100% |   8.5 MiB/s |  17.4 KiB |  00m00s
[  7/106] htslib-devel-0:1.24-1.fc46.x8 100% |  17.8 MiB/s | 109.4 KiB |  00m00s
[  8/106] perl-FindBin-0:1.54-527.fc45. 100% |   6.8 MiB/s |  13.9 KiB |  00m00s
[  9/106] perl-interpreter-4:5.44.0-527 100% |  35.5 MiB/s |  72.7 KiB |  00m00s
[ 10/106] htslib-tools-0:1.24-1.fc46.x8 100% |  76.6 MiB/s | 705.9 KiB |  00m00s
[ 11/106] zlib-ng-compat-devel-0:2.3.3- 100% |   9.2 MiB/s |  37.7 KiB |  00m00s
[ 12/106] emacs-filesystem-1:31.1-1.fc4 100% |   2.7 MiB/s |   8.2 KiB |  00m00s
[ 13/106] perl-Carp-0:1.54-527.fc45.noa 100% |  13.9 MiB/s |  28.6 KiB |  00m00s
[ 14/106] perl-Data-Dumper-0:2.192-528. 100% |  27.5 MiB/s |  56.4 KiB |  00m00s
[ 15/106] perl-Exporter-0:5.79-527.fc45 100% |  14.9 MiB/s |  30.6 KiB |  00m00s
[ 16/106] perl-Text-ParseWords-0:3.31-5 100% |   7.9 MiB/s |  16.2 KiB |  00m00s
[ 17/106] perl-constant-0:1.33-528.fc45 100% |  11.1 MiB/s |  22.7 KiB |  00m00s
[ 18/106] perl-File-Path-0:2.18-527.fc4 100% |  17.0 MiB/s |  34.8 KiB |  00m00s
[ 19/106] perl-Thread-Queue-0:3.14-527. 100% |  10.3 MiB/s |  21.0 KiB |  00m00s
[ 20/106] perl-threads-1:2.45-527.fc45. 100% |  28.2 MiB/s |  57.8 KiB |  00m00s
[ 21/106] perl-Scalar-List-Utils-5:1.70 100% |  24.4 MiB/s |  75.1 KiB |  00m00s
[ 22/106] perl-parent-1:0.244-527.fc45. 100% |   7.2 MiB/s |  14.7 KiB |  00m00s
[ 23/106] perl-Pod-Usage-4:2.05-527.fc4 100% |  19.7 MiB/s |  40.4 KiB |  00m00s
[ 24/106] perl-libs-4:5.44.0-527.fc45.x 100% | 202.9 MiB/s |   2.6 MiB |  00m00s
[ 25/106] cmake-filesystem-0:4.3.0-5.fc 100% |   1.1 MiB/s |  14.9 KiB |  00m00s
[ 26/106] gsl-0:2.8-4.fc45.x86_64       100% |  80.6 MiB/s |   1.2 MiB |  00m00s
[ 27/106] perl-threads-shared-0:1.73-52 100% |  21.9 MiB/s |  44.9 KiB |  00m00s
[ 28/106] perl-Pod-Perldoc-0:3.28.01-52 100% |  41.4 MiB/s |  84.7 KiB |  00m00s
[ 29/106] perl-podlators-1:6.1.1-1.fc46 100% |  64.6 MiB/s | 132.4 KiB |  00m00s
[ 30/106] perl-HTTP-Tiny-0:0.096-528.fc 100% |  19.0 MiB/s |  58.4 KiB |  00m00s
[ 31/106] perl-Pod-Simple-1:3.48-527.fc 100% |  72.3 MiB/s | 222.0 KiB |  00m00s
[ 32/106] perl-Term-ANSIColor-0:5.01-52 100% |  23.1 MiB/s |  47.3 KiB |  00m00s
[ 33/106] perl-Term-Cap-0:1.18-527.fc45 100% |  10.6 MiB/s |  21.7 KiB |  00m00s
[ 34/106] perl-Errno-0:1.39-527.fc45.x8 100% |   7.1 MiB/s |  14.6 KiB |  00m00s
[ 35/106] perl-Fcntl-0:1.20-527.fc45.x8 100% |  14.3 MiB/s |  29.4 KiB |  00m00s
[ 36/106] perl-IO-0:1.56-527.fc45.x86_6 100% |  40.5 MiB/s |  83.0 KiB |  00m00s
[ 37/106] perl-IO-Socket-SSL-0:2.099-2. 100% |  76.9 MiB/s | 236.2 KiB |  00m00s
[ 38/106] perl-MIME-Base64-0:3.16-527.f 100% |   9.6 MiB/s |  29.6 KiB |  00m00s
[ 39/106] perl-Net-SSLeay-0:1.96-5.fc45 100% | 123.1 MiB/s | 378.1 KiB |  00m00s
[ 40/106] perl-Socket-4:2.043-1.fc46.x8 100% |  27.2 MiB/s |  55.6 KiB |  00m00s
[ 41/106] perl-Time-HiRes-4:1.9780-527. 100% |  27.7 MiB/s |  56.8 KiB |  00m00s
[ 42/106] perl-Time-Local-2:1.350-527.f 100% |  16.7 MiB/s |  34.2 KiB |  00m00s
[ 43/106] perl-PathTools-0:3.95-527.fc4 100% |  43.0 MiB/s |  88.0 KiB |  00m00s
[ 44/106] perl-Pod-Escapes-1:1.07-527.f 100% |   9.5 MiB/s |  19.6 KiB |  00m00s
[ 45/106] perl-Text-Tabs+Wrap-0:2024.00 100% |  10.5 MiB/s |  21.5 KiB |  00m00s
[ 46/106] perl-POSIX-0:2.26-527.fc45.x8 100% |  47.2 MiB/s |  96.6 KiB |  00m00s
[ 47/106] perl-B-0:1.92-527.fc45.x86_64 100% |  59.2 MiB/s | 181.8 KiB |  00m00s
[ 48/106] perl-IO-Socket-IP-0:0.44-527. 100% |  20.5 MiB/s |  42.0 KiB |  00m00s
[ 49/106] perl-URI-0:5.37-1.fc46.noarch 100% |  73.7 MiB/s | 151.0 KiB |  00m00s
[ 50/106] perl-MIME-Base32-0:1.303-26.f 100% |   6.7 MiB/s |  20.4 KiB |  00m00s
[ 51/106] perl-Unicode-Normalize-0:1.32 100% |  18.0 MiB/s |  73.8 KiB |  00m00s
[ 52/106] perl-libnet-0:3.15-528.fc45.n 100% |  41.8 MiB/s | 128.3 KiB |  00m00s
[ 53/106] perl-Digest-MD5-0:2.59-527.fc 100% |  11.6 MiB/s |  35.6 KiB |  00m00s
[ 54/106] perl-Digest-0:1.20-527.fc45.n 100% |  12.1 MiB/s |  24.8 KiB |  00m00s
[ 55/106] perl-overload-0:1.40-527.fc45 100% |  22.1 MiB/s |  45.2 KiB |  00m00s
[ 56/106] perl-mro-0:1.30-527.fc45.x86_ 100% |  14.4 MiB/s |  29.5 KiB |  00m00s
[ 57/106] perl-Encode-4:3.24-527.fc45.x 100% | 210.6 MiB/s |   1.1 MiB |  00m00s
[ 58/106] perl-Storable-1:3.41-527.fc45 100% |  24.6 MiB/s | 100.6 KiB |  00m00s
[ 59/106] perl-File-Basename-0:2.86-527 100% |   8.2 MiB/s |  16.8 KiB |  00m00s
[ 60/106] perl-overloading-0:0.03-527.f 100% |   6.1 MiB/s |  12.5 KiB |  00m00s
[ 61/106] perl-DynaLoader-0:1.57-527.fc 100% |  12.5 MiB/s |  25.7 KiB |  00m00s
[ 62/106] perl-FileHandle-0:2.05-527.fc 100% |   7.4 MiB/s |  15.2 KiB |  00m00s
[ 63/106] perl-Symbol-0:1.09-527.fc45.n 100% |   6.8 MiB/s |  13.9 KiB |  00m00s
[ 64/106] perl-base-0:2.27-527.fc45.noa 100% |   7.8 MiB/s |  15.9 KiB |  00m00s
[ 65/106] perl-vars-0:1.05-527.fc45.noa 100% |   6.2 MiB/s |  12.7 KiB |  00m00s
[ 66/106] perl-if-0:0.61.000-527.fc45.n 100% |   6.7 MiB/s |  13.7 KiB |  00m00s
[ 67/106] ncurses-0:6.6-3.fc46.x86_64   100% |  82.5 MiB/s | 422.2 KiB |  00m00s
[ 68/106] perl-IPC-Open3-0:1.24-527.fc4 100% |  11.6 MiB/s |  23.7 KiB |  00m00s
[ 69/106] groff-base-0:1.24.1-2.fc46.x8 100% | 237.3 MiB/s |   1.2 MiB |  00m00s
[ 70/106] perl-locale-0:1.13-527.fc45.n 100% |   6.4 MiB/s |  13.2 KiB |  00m00s
[ 71/106] perl-AutoLoader-0:5.74-527.fc 100% |  10.2 MiB/s |  20.9 KiB |  00m00s
[ 72/106] perl-File-stat-0:1.15-527.fc4 100% |   8.4 MiB/s |  17.2 KiB |  00m00s
[ 73/106] perl-SelectSaver-0:1.03-527.f 100% |   5.5 MiB/s |  11.3 KiB |  00m00s
[ 74/106] perl-Class-Struct-0:0.68-527. 100% |  10.6 MiB/s |  21.8 KiB |  00m00s
[ 75/106] perl-Devel-PPPort-0:3.73-527. 100% |  42.8 MiB/s | 219.3 KiB |  00m00s
[ 76/106] perl-devel-4:5.44.0-527.fc45. 100% |  83.1 MiB/s | 680.8 KiB |  00m00s
[ 77/106] perl-ExtUtils-Install-0:2.22- 100% |  10.6 MiB/s |  43.5 KiB |  00m00s
[ 78/106] perl-ExtUtils-MakeMaker-2:7.7 100% |  72.8 MiB/s | 298.0 KiB |  00m00s
[ 79/106] perl-ExtUtils-ParseXS-1:3.64- 100% |  41.5 MiB/s | 297.4 KiB |  00m00s
[ 80/106] perl-ExtUtils-Command-2:7.78- 100% |   6.8 MiB/s |  13.9 KiB |  00m00s
[ 81/106] perl-ExtUtils-Manifest-1:1.75 100% |  16.5 MiB/s |  33.8 KiB |  00m00s
[ 82/106] perl-Test-Harness-1:3.52-528. 100% |  92.1 MiB/s | 282.8 KiB |  00m00s
[ 83/106] perl-version-9:0.99.34-527.fc 100% |  20.4 MiB/s |  62.7 KiB |  00m00s
[ 84/106] perl-File-Copy-0:2.43-527.fc4 100% |   9.6 MiB/s |  19.7 KiB |  00m00s
[ 85/106] perl-File-Find-0:1.44-527.fc4 100% |  12.2 MiB/s |  25.0 KiB |  00m00s
[ 86/106] perl-Getopt-Std-0:1.15-527.fc 100% |   7.5 MiB/s |  15.4 KiB |  00m00s
[ 87/106] gettext-devel-0:1.0-4.fc46.x8 100% |  97.7 MiB/s | 300.2 KiB |  00m00s
[ 88/106] gettext-0:1.0-4.fc46.x86_64   100% | 254.4 MiB/s |   2.0 MiB |  00m00s
[ 89/106] gettext-common-devel-0:1.0-4. 100% |  84.5 MiB/s | 605.5 KiB |  00m00s
[ 90/106] gettext-runtime-0:1.0-4.fc46. 100% |  87.6 MiB/s | 179.4 KiB |  00m00s
[ 91/106] libtextstyle-0:1.0-4.fc46.x86 100% |  46.9 MiB/s |  96.1 KiB |  00m00s
[ 92/106] gettext-envsubst-0:1.0-4.fc46 100% |  18.7 MiB/s |  38.4 KiB |  00m00s
[ 93/106] gettext-libs-0:1.0-4.fc46.x86 100% | 161.8 MiB/s | 828.3 KiB |  00m00s
[ 94/106] m4-0:1.4.21-3.fc45.x86_64     100% |  67.8 MiB/s | 347.2 KiB |  00m00s
[ 95/106] perl-File-Compare-0:1.100.800 100% |   6.3 MiB/s |  12.9 KiB |  00m00s
[ 96/106] perl-ExtUtils-Constant-0:0.25 100% |  14.3 MiB/s |  43.9 KiB |  00m00s
[ 97/106] systemtap-sdt-devel-0:5.6~pre 100% |  23.5 MiB/s |  72.3 KiB |  00m00s
[ 98/106] systemtap-sdt-dtrace-0:5.6~pr 100% |  23.8 MiB/s |  73.0 KiB |  00m00s
[ 99/106] python3-pyparsing-0:3.1.2-19. 100% |  46.7 MiB/s | 286.9 KiB |  00m00s
[100/106] perl-Benchmark-0:1.27-527.fc4 100% |   6.5 MiB/s |  26.5 KiB |  00m00s
[101/106] perl-fields-0:2.27-527.fc45.n 100% |   7.7 MiB/s |  15.8 KiB |  00m00s
[102/106] htslib-0:1.24-1.fc46.x86_64   100% |   6.3 MiB/s | 588.5 KiB |  00m00s
[103/106] perl-Hash-Util-0:0.32-527.fc4 100% |  11.1 MiB/s |  34.2 KiB |  00m00s
[104/106] perl-Hash-Util-FieldHash-0:1. 100% |  12.5 MiB/s |  38.5 KiB |  00m00s
[105/106] perl-lib-0:0.65-527.fc45.x86_ 100% |   7.1 MiB/s |  14.6 KiB |  00m00s
[106/106] perl-AutoSplit-0:5.74-527.fc4 100% |  10.4 MiB/s |  21.3 KiB |  00m00s
--------------------------------------------------------------------------------
[106/106] Total                         100% | 108.6 MiB/s |  20.4 MiB |  00m00s
Running transaction
[  1/108] Verify package files          100% |   1.3 KiB/s | 106.0   B |  00m00s
[  2/108] Prepare transaction           100% |   2.7 KiB/s | 106.0   B |  00m00s
[  3/108] Installing libtextstyle-0:1.0 100% | 207.3 MiB/s | 212.2 KiB |  00m00s
[  4/108] Installing gettext-libs-0:1.0 100% | 328.7 MiB/s |   2.3 MiB |  00m00s
[  5/108] Installing htslib-0:1.24-1.fc 100% | 267.1 MiB/s |   1.3 MiB |  00m00s
[  6/108] Installing python3-pyparsing- 100% | 346.1 MiB/s |   1.0 MiB |  00m00s
[  7/108] Installing systemtap-sdt-dtra 100% |  10.2 MiB/s | 187.1 KiB |  00m00s
[  8/108] Installing systemtap-sdt-deve 100% | 186.2 MiB/s | 190.7 KiB |  00m00s
[  9/108] Installing m4-0:1.4.21-3.fc45 100% |  43.3 MiB/s | 887.6 KiB |  00m00s
[ 10/108] Installing gettext-envsubst-0 100% |   4.1 MiB/s |  72.0 KiB |  00m00s
[ 11/108] Installing gettext-runtime-0: 100% |  35.5 MiB/s | 726.6 KiB |  00m00s
[ 12/108] Installing gettext-0:1.0-4.fc 100% | 355.8 MiB/s |  17.8 MiB |  00m00s
[ 13/108] Installing gettext-common-dev 100% | 582.5 MiB/s | 596.5 KiB |  00m00s
[ 14/108] Installing gettext-devel-0:1. 100% |  51.2 MiB/s |   1.4 MiB |  00m00s
[ 15/108] Installing groff-base-0:1.24. 100% | 112.5 MiB/s |   4.4 MiB |  00m00s
[ 16/108] Installing ncurses-0:6.6-3.fc 100% |  30.9 MiB/s | 633.2 KiB |  00m00s
[ 17/108] Installing perl-Digest-0:1.20 100% |   0.0   B/s |  37.0 KiB |  00m00s
[ 18/108] Installing perl-FileHandle-0: 100% |   0.0   B/s |   9.8 KiB |  00m00s
[ 19/108] Installing perl-B-0:1.92-527. 100% | 252.4 MiB/s | 516.9 KiB |  00m00s
[ 20/108] Installing perl-Digest-MD5-0: 100% |  60.0 MiB/s |  61.4 KiB |  00m00s
[ 21/108] Installing perl-libnet-0:3.15 100% | 143.4 MiB/s | 293.8 KiB |  00m00s
[ 22/108] Installing perl-Data-Dumper-0 100% | 114.6 MiB/s | 117.4 KiB |  00m00s
[ 23/108] Installing perl-Unicode-Norma 100% | 476.9 MiB/s | 488.4 KiB |  00m00s
[ 24/108] Installing perl-MIME-Base32-0 100% |  31.4 MiB/s |  32.2 KiB |  00m00s
[ 25/108] Installing perl-URI-0:5.37-1. 100% |  94.2 MiB/s | 289.2 KiB |  00m00s
[ 26/108] Installing perl-IO-Socket-IP- 100% |  99.9 MiB/s | 102.3 KiB |  00m00s
[ 27/108] Installing perl-AutoLoader-0: 100% |   0.0   B/s |  21.0 KiB |  00m00s
[ 28/108] Installing perl-IO-Socket-SSL 100% | 238.0 MiB/s | 731.0 KiB |  00m00s
[ 29/108] Installing perl-Net-SSLeay-0: 100% | 270.4 MiB/s |   1.4 MiB |  00m00s
[ 30/108] Installing perl-locale-0:1.13 100% |   0.0   B/s |   6.5 KiB |  00m00s
[ 31/108] Installing perl-if-0:0.61.000 100% |   0.0   B/s |   6.2 KiB |  00m00s
[ 32/108] Installing perl-Pod-Escapes-1 100% |   0.0   B/s |  25.9 KiB |  00m00s
[ 33/108] Installing perl-File-Path-0:2 100% |   0.0   B/s |  64.4 KiB |  00m00s
[ 34/108] Installing perl-Text-Tabs+Wra 100% |   0.0   B/s |  23.9 KiB |  00m00s
[ 35/108] Installing perl-Time-Local-2: 100% |   0.0   B/s |  70.6 KiB |  00m00s
[ 36/108] Installing perl-Time-HiRes-4: 100% | 114.9 MiB/s | 117.7 KiB |  00m00s
[ 37/108] Installing perl-File-Temp-1:0 100% | 161.6 MiB/s | 165.5 KiB |  00m00s
[ 38/108] Installing perl-HTTP-Tiny-0:0 100% | 160.6 MiB/s | 164.5 KiB |  00m00s
[ 39/108] Installing perl-Pod-Simple-1: 100% | 280.7 MiB/s | 574.8 KiB |  00m00s
[ 40/108] Installing perl-Class-Struct- 100% |   0.0   B/s |  25.9 KiB |  00m00s
[ 41/108] Installing perl-IPC-Open3-0:1 100% |   0.0   B/s |  28.5 KiB |  00m00s
[ 42/108] Installing perl-POSIX-0:2.26- 100% | 225.1 MiB/s | 230.5 KiB |  00m00s
[ 43/108] Installing perl-Term-Cap-0:1. 100% |   0.0   B/s |  30.6 KiB |  00m00s
[ 44/108] Installing perl-Term-ANSIColo 100% |  96.8 MiB/s |  99.1 KiB |  00m00s
[ 45/108] Installing perl-Pod-Perldoc-0 100% |   9.2 MiB/s | 169.4 KiB |  00m00s
[ 46/108] Installing perl-podlators-1:6 100% |  18.0 MiB/s | 331.1 KiB |  00m00s
[ 47/108] Installing perl-File-stat-0:1 100% |   0.0   B/s |  14.2 KiB |  00m00s
[ 48/108] Installing perl-SelectSaver-0 100% |   0.0   B/s |   2.5 KiB |  00m00s
[ 49/108] Installing perl-Symbol-0:1.09 100% |   0.0   B/s |   7.3 KiB |  00m00s
[ 50/108] Installing perl-Socket-4:2.04 100% | 120.9 MiB/s | 123.8 KiB |  00m00s
[ 51/108] Installing perl-Pod-Usage-4:2 100% |   5.0 MiB/s |  87.8 KiB |  00m00s
[ 52/108] Installing perl-IO-0:1.56-527 100% | 148.0 MiB/s | 151.5 KiB |  00m00s
[ 53/108] Installing perl-base-0:2.27-5 100% |   0.0   B/s |  13.0 KiB |  00m00s
[ 54/108] Installing perl-overloading-0 100% |   0.0   B/s |   5.5 KiB |  00m00s
[ 55/108] Installing perl-mro-0:1.30-52 100% |   0.0   B/s |  42.5 KiB |  00m00s
[ 56/108] Installing perl-Fcntl-0:1.20- 100% |   0.0   B/s |  45.8 KiB |  00m00s
[ 57/108] Installing perl-Text-ParseWor 100% |   0.0   B/s |  14.6 KiB |  00m00s
[ 58/108] Installing perl-Getopt-Long-1 100% | 143.8 MiB/s | 147.2 KiB |  00m00s
[ 59/108] Installing perl-Getopt-Std-0: 100% |   0.0   B/s |  13.0 KiB |  00m00s
[ 60/108] Installing perl-Storable-1:3. 100% | 230.9 MiB/s | 236.5 KiB |  00m00s
[ 61/108] Installing perl-vars-0:1.05-5 100% |   0.0   B/s |   4.3 KiB |  00m00s
[ 62/108] Installing perl-overload-0:1. 100% |   0.0   B/s |  72.0 KiB |  00m00s
[ 63/108] Installing perl-File-Basename 100% |   0.0   B/s |  14.6 KiB |  00m00s
[ 64/108] Installing perl-MIME-Base64-0 100% |  43.1 MiB/s |  44.1 KiB |  00m00s
[ 65/108] Installing perl-Errno-0:1.39- 100% |   0.0   B/s |   8.8 KiB |  00m00s
[ 66/108] Installing perl-parent-1:0.24 100% |   0.0   B/s |  11.0 KiB |  00m00s
[ 67/108] Installing perl-Scalar-List-U 100% | 145.1 MiB/s | 148.6 KiB |  00m00s
[ 68/108] Installing perl-constant-0:1. 100% |  26.8 MiB/s |  27.4 KiB |  00m00s
[ 69/108] Installing perl-Encode-4:3.24 100% | 167.6 MiB/s |   4.7 MiB |  00m00s
[ 70/108] Installing perl-DynaLoader-0: 100% |   0.0   B/s |  32.5 KiB |  00m00s
[ 71/108] Installing perl-PathTools-0:3 100% | 180.2 MiB/s | 184.5 KiB |  00m00s
[ 72/108] Installing perl-Exporter-0:5. 100% |   0.0   B/s |  55.5 KiB |  00m00s
[ 73/108] Installing perl-Carp-0:1.54-5 100% |  23.3 MiB/s |  47.7 KiB |  00m00s
[ 74/108] Installing perl-libs-4:5.44.0 100% | 302.2 MiB/s |  12.1 MiB |  00m00s
[ 75/108] Installing perl-interpreter-4 100% |   6.6 MiB/s | 121.4 KiB |  00m00s
[ 76/108] Installing perl-File-Find-0:1 100% |   0.0   B/s |  42.5 KiB |  00m00s
[ 77/108] Installing perl-File-Copy-0:2 100% |   0.0   B/s |  20.2 KiB |  00m00s
[ 78/108] Installing perl-File-Compare- 100% |   0.0   B/s |   6.2 KiB |  00m00s
[ 79/108] Installing perl-threads-1:2.4 100% | 110.2 MiB/s | 112.9 KiB |  00m00s
[ 80/108] Installing perl-threads-share 100% |  79.9 MiB/s |  81.8 KiB |  00m00s
[ 81/108] Installing perl-Thread-Queue- 100% |   0.0   B/s |  30.4 KiB |  00m00s
[ 82/108] Installing perl-ExtUtils-Comm 100% |   0.0   B/s |  10.2 KiB |  00m00s
[ 83/108] Installing perl-ExtUtils-Mani 100% |  84.3 MiB/s |  86.3 KiB |  00m00s
[ 84/108] Installing perl-Devel-PPPort- 100% | 290.4 MiB/s | 892.1 KiB |  00m00s
[ 85/108] Installing perl-version-9:0.9 100% | 132.3 MiB/s | 135.5 KiB |  00m00s
[ 86/108] Installing perl-ExtUtils-Cons 100% |  85.7 MiB/s |  87.7 KiB |  00m00s
[ 87/108] Installing perl-Benchmark-0:1 100% |  36.0 MiB/s |  36.8 KiB |  00m00s
[ 88/108] Installing perl-Test-Harness- 100% |  27.1 MiB/s | 583.7 KiB |  00m00s
[ 89/108] Installing perl-Hash-Util-Fie 100% |  62.7 MiB/s |  64.2 KiB |  00m00s
[ 90/108] Installing perl-Hash-Util-0:0 100% |   0.0   B/s |  56.3 KiB |  00m00s
[ 91/108] Installing perl-fields-0:2.27 100% |   0.0   B/s |  12.3 KiB |  00m00s
[ 92/108] Installing perl-ExtUtils-Pars 100% |  37.5 MiB/s | 729.2 KiB |  00m00s
[ 93/108] Installing perl-lib-0:0.65-52 100% |   0.0   B/s |   8.9 KiB |  00m00s
[ 94/108] Installing perl-AutoSplit-0:5 100% |   0.0   B/s |  23.6 KiB |  00m00s
[ 95/108] Installing perl-ExtUtils-Make 100% |  36.7 MiB/s | 750.6 KiB |  00m00s
[ 96/108] Installing perl-ExtUtils-Inst 100% |  85.2 MiB/s |  87.2 KiB |  00m00s
[ 97/108] Installing perl-devel-4:5.44. 100% | 157.2 MiB/s |   4.1 MiB |  00m00s
[ 98/108] Installing cmake-filesystem-0 100% |   9.1 MiB/s |   9.4 KiB |  00m00s
[ 99/108] Installing gsl-0:2.8-4.fc45.x 100% | 136.2 MiB/s |   3.5 MiB |  00m00s
[100/108] Installing emacs-filesystem-1 100% |   0.0   B/s |   1.1 KiB |  00m00s
[101/108] Installing autoconf-0:2.73-4. 100% | 120.0 MiB/s |   2.9 MiB |  00m00s
[102/108] Installing automake-0:1.18.1- 100% |  79.9 MiB/s |   1.8 MiB |  00m00s
[103/108] Installing gsl-devel-0:2.8-4. 100% |  72.4 MiB/s |   1.7 MiB |  00m00s
[104/108] Installing zlib-ng-compat-dev 100% | 106.0 MiB/s | 108.6 KiB |  00m00s
[105/108] Installing perl-ExtUtils-Embe 100% |   0.0   B/s |  16.1 KiB |  00m00s
[106/108] Installing perl-FindBin-0:1.5 100% |   0.0   B/s |   7.2 KiB |  00m00s
[107/108] Installing htslib-devel-0:1.2 100% | 230.2 MiB/s | 471.4 KiB |  00m00s
[108/108] Installing htslib-tools-0:1.2 100% |  34.5 MiB/s |   3.8 MiB |  00m00s
Warning: skipped OpenPGP checks for 6 packages from repository: copr_base
Complete!
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1784678400
Wrote: /builddir/build/SRPMS/bcftools-1.24-2.fc46.src.rpm
Updating and loading repositories:
 fedora                                 100% |  72.4 KiB/s |  24.5 KiB |  00m00s
 Additional repo copr_tstellar_fedora_c 100% |   5.5 KiB/s |   1.5 KiB |  00m00s
 Additional repo copr_fedora_llvm_team_ 100% |   5.6 KiB/s |   1.5 KiB |  00m00s
 Copr repository                        100% |   5.6 KiB/s |   1.5 KiB |  00m00s
Repositories loaded.
Package "autoconf-2.73-4.fc45.noarch" is already installed.
Package "automake-1.18.1-5.fc45.noarch" is already installed.
Package "gcc-16.2.1-2.fc46.1.x86_64" is already installed.
Package "gsl-devel-2.8-4.fc45.x86_64" is already installed.
Package "htslib-devel-1.24-1.fc46.x86_64" is already installed.
Package "htslib-tools-1.24-1.fc46.x86_64" is already installed.
Package "make-1:4.4.1-13.fc46.x86_64" is already installed.
Package "perl-ExtUtils-Embed-1.35-527.fc45.noarch" is already installed.
Package "perl-File-Temp-1:0.231.200-527.fc45.noarch" is already installed.
Package "perl-FindBin-1.54-527.fc45.noarch" is already installed.
Package "perl-Getopt-Long-1:2.58-527.fc45.noarch" is already installed.
Package "perl-interpreter-4:5.44.0-527.fc45.x86_64" is already installed.
Package "zlib-ng-compat-devel-2.3.3-6.fc46.x86_64" is already installed.

Nothing to do.
Finish: build setup for bcftools-1.24-2.fc46.src.rpm
Start: rpmbuild bcftools-1.24-2.fc46.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1784678400
Executing(mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.J3uVfP
Creating(rpmbuild.env): /builddir/build/BUILD/bcftools-1.24-build/rpmbuild.env
  RPM_SOURCE_DIR="/builddir/build/SOURCES"
  RPM_BUILD_DIR="/builddir/build/BUILD/bcftools-1.24-build"
  RPM_OPT_FLAGS="-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer"
  RPM_LD_FLAGS="-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1   "
  RPM_ARCH="x86_64"
  RPM_OS="linux"
  RPM_BUILD_NCPUS="4"
  RPM_SPECPARTS_DIR="/builddir/build/BUILD/bcftools-1.24-build/SPECPARTS"
  export RPM_SOURCE_DIR RPM_BUILD_DIR RPM_OPT_FLAGS RPM_ARCH RPM_OS RPM_BUILD_NCPUS RPM_SPECPARTS_DIR RPM_LD_FLAGS
  RPM_DOC_DIR="/usr/share/doc"
  export RPM_DOC_DIR
  RPM_PACKAGE_NAME="bcftools"
  RPM_PACKAGE_VERSION="1.24"
  RPM_PACKAGE_RELEASE="2.fc46"
  export RPM_PACKAGE_NAME RPM_PACKAGE_VERSION RPM_PACKAGE_RELEASE
  LANG=C.UTF-8
  export LANG
  unset CDPATH DISPLAY ||:
  unset DEBUGINFOD_URLS ||:
  unset RPM_CONFIG_DIR ||:
  RPM_BUILD_ROOT="/builddir/build/BUILD/bcftools-1.24-build/BUILDROOT"
  export RPM_BUILD_ROOT
  
  PKG_CONFIG_PATH="${PKG_CONFIG_PATH}:/usr/lib64/pkgconfig:/usr/share/pkgconfig"
  export PKG_CONFIG_PATH
  CONFIG_SITE=${CONFIG_SITE:-NONE}
  export CONFIG_SITE
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.xmpGm0
+ umask 022
+ cd /builddir/build/BUILD/bcftools-1.24-build
+ cd /builddir/build/BUILD/bcftools-1.24-build
+ rm -rf bcftools-1.24
+ /usr/bin/rpmuncompress -x /builddir/build/SOURCES/bcftools-1.24.tar.bz2
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd bcftools-1.24
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ sed -i '1s|/usr/bin/env perl|/usr/bin/perl|' misc/color-chrs.pl misc/demo-flt.pl misc/run-roh.pl misc/vcfutils.pl misc/plot-vcfstats
+ sed -i '1s|/usr/bin/env python3\{0,1\}|/usr/bin/python3|' misc/gff2gff.py misc/guess-ploidy.py misc/plot-roh.py
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.9bBo3H
+ umask 022
+ cd /builddir/build/BUILD/bcftools-1.24-build
+ CFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1   '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=clang
+ export CC
+ CXX=clang++
+ export CXX
+ cd bcftools-1.24
+ autoreconf -fiv
autoreconf: export WARNINGS=
autoreconf: Entering directory '.'
autoreconf: configure.ac: no obvious need to run autopoint
autoreconf: running: aclocal --force 
autoreconf: configure.ac: tracing
autoreconf: configure.ac: subdirectory $HTSDIR not present
autoreconf: configure.ac: not using Libtool
autoreconf: configure.ac: not using Intltool
autoreconf: configure.ac: not using Gtkdoc
autoreconf: configure.ac: no need to run autopoint (confirmed)
autoreconf: running: /usr/bin/autoconf --force
configure.ac:94: warning: _AC_CONFIG_SUBDIRS: you should use literals
./lib/autoconf/status.m4:1100: AC_CONFIG_SUBDIRS is expanded from...
m4/ax_with_htslib.m4:55: AX_WITH_HTSLIB is expanded from...
configure.ac:94: the top level
autoreconf: running: /usr/bin/autoheader --force
autoreconf: configure.ac: not using Automake
autoreconf: configure.ac: not running make: --make not given
autoreconf: Leaving directory '.'
+ CFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1   '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=clang
+ export CC
+ CXX=clang++
+ export CXX
+ '[' '-flto=thin -ffat-lto-objectsx' '!=' x ']'
++ find . -type f -name configure -print
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup '/lt_cv_sys_global_symbol_to_cdecl=/s#(".*"|'\''.*'\'')#"sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./htslib-1.24/configure
+ diff -u ./htslib-1.24/configure.backup ./htslib-1.24/configure
+ mv ./htslib-1.24/configure.backup ./htslib-1.24/configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./htslib-1.24/configure
+ diff -u ./htslib-1.24/configure.backup ./htslib-1.24/configure
+ mv ./htslib-1.24/configure.backup ./htslib-1.24/configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./htslib-1.24/configure
+ diff -u ./htslib-1.24/configure.backup ./htslib-1.24/configure
+ mv ./htslib-1.24/configure.backup ./htslib-1.24/configure
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./htslib-1.24/configure
+ diff -u ./htslib-1.24/configure.backup ./htslib-1.24/configure
+ mv ./htslib-1.24/configure.backup ./htslib-1.24/configure
+ /usr/bin/sed -r --in-place=.backup '/lt_cv_sys_global_symbol_to_cdecl=/s#(".*"|'\''.*'\'')#"sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./htslib-1.24/configure
+ diff -u ./htslib-1.24/configure.backup ./htslib-1.24/configure
+ mv ./htslib-1.24/configure.backup ./htslib-1.24/configure
+ '[' 1 = 1 ']'
+++ dirname ./configure
++ find . -name config.guess -o -name config.sub
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./htslib-1.24/config.guess
+ '[' -f /usr/lib/rpm/redhat/config.guess ']'
+ /usr/bin/rm -f ./htslib-1.24/config.guess
++ basename ./htslib-1.24/config.guess
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./htslib-1.24/config.guess
'/usr/lib/rpm/redhat/config.guess' -> './htslib-1.24/config.guess'
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./htslib-1.24/config.sub
+ '[' -f /usr/lib/rpm/redhat/config.sub ']'
+ /usr/bin/rm -f ./htslib-1.24/config.sub
++ basename ./htslib-1.24/config.sub
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./htslib-1.24/config.sub
'/usr/lib/rpm/redhat/config.sub' -> './htslib-1.24/config.sub'
+ '[' 1 = 1 ']'
+ '[' x '!=' 'x-Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg' ']'
++ find . -name ltmain.sh
++ grep -q runstatedir=DIR ./configure
++ echo --runstatedir=/run
+ ./configure --build=x86_64-redhat-linux --host=x86_64-redhat-linux --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/bin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --runstatedir=/run --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info 'CFLAGS=-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' 'LDFLAGS=-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1   ' --prefix=/usr --with-htslib=system --enable-perl-filters --enable-libgsl '--with-bcf-plugin-path=/usr/local/libexec/bcftools:$(plugindir)'
checking for x86_64-redhat-linux-gcc... clang
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether clang accepts -g... yes
checking for clang option to enable C23 features... -std=gnu23
checking for grep that handles long lines and -e... /usr/bin/grep
checking for C compiler warning flags... -Wall
checking for clang -std=gnu23 option to support large files... none needed
checking for htslib/sam.h... yes
checking for hts_version in -lhts... yes
checking shared library type... plain .so
checking for library containing dlopen... none required
checking if the compiler accepts -rdynamic... yes
checking for zlib.h... yes
checking for inflate in -lz... yes
checking for gsl/gsl_version.h... yes
checking for library containing cblas_dgemm... -lgslcblas
checking for gsl_multifit_gradient in -lgsl... yes
configure: removing -specs=...redhat-hardened... from Perl options
checking for library containing Perl_call_pv... -lperl
checking for library containing regcomp... none required
configure: creating ./config.status
config.status: creating config.mk
config.status: creating config.h
configure: License has been changed to GPL.

Linking against the GNU scientific library requires that the resulting
binary is licensed using the GNU General Public License.  In particular,
this means you will have to follow the terms of this license in order
to distribute binary copies.  For more information see the INSTALL file.

Text of the GNU General Public License can be found in the LICENSE file,
or at http://www.gnu.org/copyleft/gpl.html

Information on the GNU Scientific Library, including the rationale for
its choice of license can be found at https://www.gnu.org/software/gsl/

+ /usr/bin/make -O -j4 V=1 VERBOSE=1
echo '#define BCFTOOLS_VERSION "1.24"' > version.h
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o tabix.o tabix.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcfindex.o vcfindex.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcfisec.o vcfisec.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcfquery.o vcfquery.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcffilter.o vcffilter.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcfstats.o vcfstats.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcfsom.o vcfsom.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcfgtcheck.o vcfgtcheck.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcfview.o vcfview.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcfmerge.o vcfmerge.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcfnorm.o vcfnorm.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcfroh.o vcfroh.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -D_REENTRANT -D_GNU_SOURCE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fwrapv -fno-strict-aliasing -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/lib64/perl5/CORE -c -o filter.o filter.c
clang: warning: argument unused during compilation: '-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1' [-Wunused-command-line-argument]
warning: unknown warning option '-Wno-complain-wrong-lang'; did you mean '-Wno-c++11-long-long'? [-Wunknown-warning-option]
1 warning generated.
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcfconcat.o vcfconcat.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcmp.o vcmp.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o gvcf.o gvcf.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcfcall.o vcfcall.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o mcall.o mcall.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcfannotate.o vcfannotate.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o reheader.o reheader.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o tsv2vcf.o tsv2vcf.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcfhead.o vcfhead.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcfcnv.o vcfcnv.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcfconvert.o vcfconvert.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o convert.o convert.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o HMM.o HMM.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o bin.o bin.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o ploidy.o ploidy.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o version.o version.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o hclust.o hclust.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o smpl_ilist.o smpl_ilist.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o consensus.o consensus.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o regidx.o regidx.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcfbuf.o vcfbuf.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o mpileup.o mpileup.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o bam2bcf.o bam2bcf.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o bam2bcf_indel.o bam2bcf_indel.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o bam2bcf_iaux.o bam2bcf_iaux.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o csq.o csq.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o bam_sample.o bam_sample.c
bam_sample.c:172:15: warning: initializing 'char *' with an expression of type 'const char *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
  172 |         char *eol = strchr(q + 3, '\n');
      |               ^     ~~~~~~~~~~~~~~~~~~~
1 warning generated.
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o cols.o cols.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o read_consensus.o read_consensus.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o bam2bcf_edlib.o bam2bcf_edlib.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o dist.o dist.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o extsort.o extsort.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcfsort.o vcfsort.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o ccall.o ccall.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o em.o em.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o kmin.o kmin.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o str_finder.o str_finder.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o abuf.o abuf.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o edlib.o edlib.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o prob1.o prob1.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o mpileup2/mpileup.o mpileup2/mpileup.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o peakfit.o peakfit.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o gff.o gff.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o polysomy.o polysomy.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o test/test-rbuf.o test/test-rbuf.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.   -DPLUGINPATH='"/usr/local/libexec/bcftools:/usr/libexec/bcftools"' -c -o vcfplugin.o vcfplugin.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o test/test-regidx.o test/test-regidx.c
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/GTsubset.so version.c plugins/GTsubset.c  
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/GTisec.so version.c plugins/GTisec.c  
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/add-variantkey.so version.c plugins/add-variantkey.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/allele-length.so version.c plugins/allele-length.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/af-dist.so bin.c version.c plugins/af-dist.c  
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/check-ploidy.so version.c plugins/check-ploidy.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/check-sparsity.so version.c plugins/check-sparsity.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/counts.so version.c plugins/counts.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/contrast.so version.c plugins/contrast.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/color-chrs.so HMM.c version.c plugins/color-chrs.c  
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/fill-AN-AC.so version.c plugins/fill-AN-AC.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/dosage.so version.c plugins/dosage.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/ad-bias.so convert.c version.c plugins/ad-bias.c  
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/fixref.so version.c plugins/fixref.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/fill-tags.so version.c plugins/fill-tags.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/fixploidy.so ploidy.c regidx.c version.c plugins/fixploidy.c  
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/frameshifts.so version.c plugins/frameshifts.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/impute-info.so version.c plugins/impute-info.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/gvcfz.so version.c plugins/gvcfz.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/guess-ploidy.so version.c plugins/guess-ploidy.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/isecGT.so smpl_ilist.c version.c plugins/isecGT.c  
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/indel-stats.so version.c plugins/indel-stats.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/missing2ref.so version.c plugins/missing2ref.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/mendelian2.so version.c plugins/mendelian2.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/parental-origin.so version.c plugins/parental-origin.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/remove-overlaps.so version.c plugins/remove-overlaps.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/prune.so version.c plugins/prune.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/scatter.so version.c plugins/scatter.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/smpl-stats.so version.c plugins/smpl-stats.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/setGT.so version.c plugins/setGT.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -D_REENTRANT -D_GNU_SOURCE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fwrapv -fno-strict-aliasing -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/lib64/perl5/CORE -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/fill-from-fasta.so filter.c version.c plugins/fill-from-fasta.c  
clang: warning: argument unused during compilation: '-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1' [-Wunused-command-line-argument]
warning: unknown warning option '-Wno-complain-wrong-lang'; did you mean '-Wno-c++11-long-long'? [-Wunknown-warning-option]
1 warning generated.
warning: unknown warning option '-Wno-complain-wrong-lang'; did you mean '-Wno-c++11-long-long'? [-Wunknown-warning-option]
1 warning generated.
warning: unknown warning option '-Wno-complain-wrong-lang'; did you mean '-Wno-c++11-long-long'? [-Wunknown-warning-option]
1 warning generated.
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/tag2tag.so version.c plugins/tag2tag.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/split.so version.c plugins/split.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/split-vep.so version.c plugins/split-vep.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/trio-switch-rate.so version.c plugins/trio-switch-rate.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/trio-stats.so version.c plugins/trio-stats.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/variant-distance.so version.c plugins/variant-distance.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/variantkey-hex.so version.c plugins/variantkey-hex.c 
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.   -DUSE_GPL -c -o main.o main.c
clang -std=gnu23 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o test/test-rbuf test/test-rbuf.o -lz  
clang -std=gnu23  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o test/test-regidx test/test-regidx.o regidx.o -lhts -lpthread -lz  
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/vrfs.so version.c plugins/vrfs.c  
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/vcf2table.so version.c plugins/vcf2table.c 
plugins/vcf2table.c:1066:13: warning: initializing 'char *' with an expression of type 'const char *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
 1066 |       char* eq = strchr(info, '=');
      |             ^    ~~~~~~~~~~~~~~~~~
1 warning generated.
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/trio-dnm3.so version.c plugins/trio-dnm3.c 
clang -std=gnu23 -rdynamic  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o bcftools main.o vcfindex.o tabix.o vcfstats.o vcfisec.o vcfmerge.o vcfquery.o vcffilter.o filter.o vcfsom.o vcfnorm.o vcfgtcheck.o vcfview.o vcfannotate.o vcfroh.o vcfconcat.o vcfcall.o mcall.o vcmp.o gvcf.o reheader.o convert.o vcfconvert.o tsv2vcf.o vcfcnv.o vcfhead.o HMM.o consensus.o ploidy.o bin.o hclust.o version.o regidx.o smpl_ilist.o csq.o vcfbuf.o mpileup.o bam2bcf.o bam2bcf_indel.o bam2bcf_iaux.o bam2bcf_edlib.o read_consensus.o bam_sample.o vcfsort.o cols.o extsort.o dist.o abuf.o ccall.o em.o prob1.o kmin.o str_finder.o gff.o edlib.o mpileup2/mpileup.o polysomy.o peakfit.o vcfplugin.o -lhts -lm -lz   -lgsl -lgslcblas -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -fstack-protector-strong -L/usr/local/lib -L/usr/lib64/perl5/CORE -lperl -lpthread -lresolv -ldl -lm -lcrypt -lutil -lc -lpthread
clang: warning: argument unused during compilation: '-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1' [-Wunused-command-line-argument]
clang: warning: argument unused during compilation: '-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1' [-Wunused-command-line-argument]
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.DytZuw
+ umask 022
+ cd /builddir/build/BUILD/bcftools-1.24-build
+ '[' /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT '!=' / ']'
+ rm -rf /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT
++ dirname /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT
+ mkdir -p /builddir/build/BUILD/bcftools-1.24-build
+ mkdir /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT
+ CFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1   '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=clang
+ export CC
+ CXX=clang++
+ export CXX
+ cd bcftools-1.24
+ /usr/bin/make install DESTDIR=/builddir/build/BUILD/bcftools-1.24-build/BUILDROOT 'INSTALL=/usr/bin/install -p'
mkdir -p -m 755 /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT/usr/bin /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT/usr/share/man/man1 /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT/usr/libexec/bcftools
/usr/bin/install -p bcftools /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT/usr/bin
/usr/bin/install -p misc/color-chrs.pl misc/gff2gff misc/gff2gff.py misc/guess-ploidy.py misc/plot-vcfstats misc/plot-roh.py misc/roh-viz misc/run-roh.pl misc/vcfutils.pl misc/vrfs-variances /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT/usr/bin
/usr/bin/install -p -m 644 doc/bcftools.1 /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT/usr/share/man/man1
/usr/bin/install -p plugins/*.so /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT/usr/libexec/bcftools
+ /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 1.24-2.fc46 --unique-debug-suffix -1.24-2.fc46.x86_64 --unique-debug-src-base bcftools-1.24-2.fc46.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 --remove-section .gnu.build.attributes -S debugsourcefiles.list /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24
find-debuginfo: starting
Extracting debug info from 42 files
DWARF-compressing 42 files
dwz: ./usr/bin/bcftools-1.24-2.fc46.x86_64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/GTisec.so-1.24-2.fc46.x86_64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/GTsubset.so-1.24-2.fc46.x86_64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/ad-bias.so-1.24-2.fc46.x86_64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/add-variantkey.so-1.24-2.fc46.x86_64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/af-dist.so-1.24-2.fc46.x86_64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/allele-length.so-1.24-2.fc46.x86_64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/check-ploidy.so-1.24-2.fc46.x86_64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/check-sparsity.so-1.24-2.fc46.x86_64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/color-chrs.so-1.24-2.fc46.x86_64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/contrast.so-1.24-2.fc46.x86_64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/counts.so-1.24-2.fc46.x86_64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/dosage.so-1.24-2.fc46.x86_64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/fill-AN-AC.so-1.24-2.fc46.x86_64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/fill-from-fasta.so-1.24-2.fc46.x86_64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/fill-tags.so-1.24-2.fc46.x86_64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/fixploidy.so-1.24-2.fc46.x86_64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/fixref.so-1.24-2.fc46.x86_64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/frameshifts.so-1.24-2.fc46.x86_64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/guess-ploidy.so-1.24-2.fc46.x86_64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/gvcfz.so-1.24-2.fc46.x86_64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/impute-info.so-1.24-2.fc46.x86_64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/indel-stats.so-1.24-2.fc46.x86_64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/isecGT.so-1.24-2.fc46.x86_64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/mendelian2.so-1.24-2.fc46.x86_64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/missing2ref.so-1.24-2.fc46.x86_64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/parental-origin.so-1.24-2.fc46.x86_64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/prune.so-1.24-2.fc46.x86_64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/remove-overlaps.so-1.24-2.fc46.x86_64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/scatter.so-1.24-2.fc46.x86_64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/setGT.so-1.24-2.fc46.x86_64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/smpl-stats.so-1.24-2.fc46.x86_64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/split-vep.so-1.24-2.fc46.x86_64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/split.so-1.24-2.fc46.x86_64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/tag2tag.so-1.24-2.fc46.x86_64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/trio-dnm3.so-1.24-2.fc46.x86_64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/trio-stats.so-1.24-2.fc46.x86_64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/trio-switch-rate.so-1.24-2.fc46.x86_64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/variant-distance.so-1.24-2.fc46.x86_64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/variantkey-hex.so-1.24-2.fc46.x86_64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/vcf2table.so-1.24-2.fc46.x86_64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/vrfs.so-1.24-2.fc46.x86_64.debug: Unknown debugging section .debug_addr
dwz: Too few files for multifile optimization
sepdebugcrcfix: Updated 0 CRC32s, 42 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/bcftools-1.24-2.fc46.x86_64
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ COMPRESS='gzip -9 -n'
+ COMPRESS_EXT=.gz
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
mangling shebang in /usr/bin/vrfs-variances from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/bin/roh-viz from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/bin/gff2gff from /usr/bin/env perl to #!/usr/bin/perl
+ /usr/lib/rpm/brp-remove-la-files
+ /usr/lib/rpm/redhat/brp-python-rpm-in-distinfo
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/bin/add-det --brp -j4 /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT
Scanned 19 directories and 230 files,
    processed 1 inodes,
    0 modified (0 replaced + 0 rewritten),
    0 unsupported format, 0 errors
+ /usr/bin/linkdupes --brp /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT/usr
Scanned 18 directories and 230 files,
    considered 230 files, read 4 files, linked 0 files, 0 errors
    sum of sizes of linked files: 0 bytes
Reading /builddir/build/BUILD/bcftools-1.24-build/SPECPARTS/rpm-debuginfo.specpart
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.Qm3OVP
+ umask 022
+ cd /builddir/build/BUILD/bcftools-1.24-build
+ CFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1   '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=clang
+ export CC
+ CXX=clang++
+ export CXX
+ cd bcftools-1.24
+ ldd bcftools
+ grep -E '/lib(64)?(/lp64d)?/libhts\.so\.'
	libhts.so.3 => /lib64/libhts.so.3 (0x00007f4753986000)
+ make test
./test/test-rbuf
Inserted 1-9 starting at offset 5:
  5  6  7  8  9  0  1  2  3
  1  2  3  4  5  6  7  8  9
4th is 4
Deleting 1-2:
  7  8  9  0  1  2  3
  3  4  5  6  7  8  9
Prepending 0-8:
  8  9  0  1  2  3  4  5  6  7
  8  7  6  5  4  3  2  1  0  3
Expanding:
  8  9 10 11 12 13 14 15 16 17
  8  7  6  5  4  3  2  1  0  3
./test/test-regidx
REF_PATH=: ./test/test.pl --plugins --exec bgzip= --exec tabix= --htsdir= ${TEST_OPTS:-}
./test/test.pl: module IO::Pty not found; skipping usage tests
test_usage:
	bcftools
test_tabix:
	tabix /tmp/ckUtnuSS1e/merge.a.vcf.gz 2:3199812-3199812
.. ok

test_tabix:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H /tmp/ckUtnuSS1e/merge.a.bcf 2:3199812-3199812
.. ok

test_tabix:
	tabix /tmp/ckUtnuSS1e/merge.a.vcf.gz 1:3000151-3000151
.. ok

test_tabix:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H /tmp/ckUtnuSS1e/merge.a.bcf 1:3000151-3000151
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H /tmp/ckUtnuSS1e/large_chrom_csi_limit.vcf.gz chr20:1-2147483647
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H /tmp/ckUtnuSS1e/large_chrom_csi_limit.bcf chr20:1-2147483647
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H /tmp/ckUtnuSS1e/large_chrom_csi_limit.bcf chr20:1-2147483647
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H /tmp/ckUtnuSS1e/large_chrom_csi_limit.vcf.gz chr20:1-2147483647
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H /tmp/ckUtnuSS1e/large_chrom_csi_limit.bcf chr20:1-2147483647
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H /tmp/ckUtnuSS1e/large_chrom_csi_limit.vcf.gz chr20
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H /tmp/ckUtnuSS1e/large_chrom_csi_limit.bcf chr20
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H /tmp/ckUtnuSS1e/large_chrom_csi_limit.bcf chr20
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H /tmp/ckUtnuSS1e/large_chrom_csi_limit.vcf.gz chr20
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H /tmp/ckUtnuSS1e/large_chrom_csi_limit.bcf chr20
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools index -s /tmp/ckUtnuSS1e/idx.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools index -s /tmp/ckUtnuSS1e/idx.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools index -s /tmp/ckUtnuSS1e/idx.bcf
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools index -n /tmp/ckUtnuSS1e/idx.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools index -n /tmp/ckUtnuSS1e/idx.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools index -n /tmp/ckUtnuSS1e/idx.vcf.gz.csi
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools index -n /tmp/ckUtnuSS1e/idx.bcf
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools index -n /tmp/ckUtnuSS1e/idx.bcf.csi
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools index -s /tmp/ckUtnuSS1e/empty.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools index -s /tmp/ckUtnuSS1e/empty.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools index -s /tmp/ckUtnuSS1e/empty.bcf
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools index -n /tmp/ckUtnuSS1e/empty.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools index -n /tmp/ckUtnuSS1e/empty.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools index -n /tmp/ckUtnuSS1e/empty.vcf.gz.csi
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools index -n /tmp/ckUtnuSS1e/empty.bcf
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools index -n /tmp/ckUtnuSS1e/empty.bcf.csi
.. ok

test_vcf_check:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools stats -s - /tmp/ckUtnuSS1e/check.vcf.gz | grep -v '^# The command' | grep -v '^# This' | grep -v '^ID	'
.. ok

test_vcf_check:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/check.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools stats -s - | grep -v '^# The command' | grep -v '^# This' | grep -v '^ID	'
.. ok

test_vcf_check_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/misc/plot-vcfstats -m /tmp/ckUtnuSS1e/check.1.chk /tmp/ckUtnuSS1e/check.2.chk /tmp/ckUtnuSS1e/check.3.chk /tmp/ckUtnuSS1e/check.4.chk | grep -v 'plot-vcfstats' | grep -v '^# The command' | grep -v '^# This' | grep -v '^ID	'
.. ok

test_vcf_stats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools stats -s A,B  /tmp/ckUtnuSS1e/stats-smpl-order.vcf.gz | grep -v '^#' | grep -v '^ID	'  | LC_ALL=C sort
.. ok

test_vcf_stats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools stats -s B,A  /tmp/ckUtnuSS1e/stats-smpl-order.vcf.gz | grep -v '^#' | grep -v '^ID	'  | LC_ALL=C sort
.. ok

test_vcf_stats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools stats -s -  /tmp/ckUtnuSS1e/stats.a.vcf.gz /tmp/ckUtnuSS1e/stats.b.vcf.gz | grep -v '^#' | grep -v '^ID	' 
.. ok

test_vcf_stats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools stats -s B  /tmp/ckUtnuSS1e/stats.a.vcf.gz /tmp/ckUtnuSS1e/stats.b.vcf.gz | grep -v '^#' | grep -v '^ID	' 
.. ok

test_vcf_stats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools stats -s -  /tmp/ckUtnuSS1e/stats.counts.vcf.gz | grep -v '^#' | grep -v '^ID	' 
.. ok

test_vcf_stats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools stats -s - -i 'type="snp"'  /tmp/ckUtnuSS1e/stats.counts.vcf.gz | grep -v '^#' | grep -v '^ID	' 
.. ok

test_vcf_stats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools stats -s -  /tmp/ckUtnuSS1e/stats.vaf.vcf.gz | grep -v '^#' | grep -v '^ID	' 
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools isec -n =2 -w 2 --no-version /tmp/ckUtnuSS1e/isec.match-id.1.1.vcf.gz /tmp/ckUtnuSS1e/isec.match-id.1.2.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools isec -n =2 -w 2 -c id --no-version /tmp/ckUtnuSS1e/isec.match-id.1.1.vcf.gz /tmp/ckUtnuSS1e/isec.match-id.1.2.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools isec -n =2 /tmp/ckUtnuSS1e/isec.a.vcf.gz /tmp/ckUtnuSS1e/isec.b.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools isec -n =2 -i"STRLEN(REF)==2" /tmp/ckUtnuSS1e/isec.a.vcf.gz /tmp/ckUtnuSS1e/isec.b.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools isec -n =2 -c both /tmp/ckUtnuSS1e/isec.a.vcf.gz /tmp/ckUtnuSS1e/isec.b.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools isec -n =2 -c any /tmp/ckUtnuSS1e/isec.a.vcf.gz /tmp/ckUtnuSS1e/isec.b.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools isec -C -c any /tmp/ckUtnuSS1e/isec.a.vcf.gz /tmp/ckUtnuSS1e/isec.b.vcf.gz
.. ok

test_vcf_isec2:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools isec --no-version   -T /tmp/ckUtnuSS1e/isec.tab.gz /tmp/ckUtnuSS1e/isec.a.vcf.gz
.. ok

test_vcf_isec2:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools isec -Ob  -T /tmp/ckUtnuSS1e/isec.tab.gz /tmp/ckUtnuSS1e/isec.a.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools isec -n +1 -r 20:100,20:140,12:55,20:140,20:100 /tmp/ckUtnuSS1e/isec-miss.1.1.vcf.gz /tmp/ckUtnuSS1e/isec-miss.1.2.vcf.gz /tmp/ckUtnuSS1e/isec-miss.1.3.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools isec -R /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/isec-miss.1.regs.txt -n +1 /tmp/ckUtnuSS1e/isec-miss.1.1.vcf.gz /tmp/ckUtnuSS1e/isec-miss.1.2.vcf.gz /tmp/ckUtnuSS1e/isec-miss.1.3.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools isec -n +1 -r 20:100,20:140,12:55,20:140,20:100 /tmp/ckUtnuSS1e/isec-miss.2.1.vcf.gz /tmp/ckUtnuSS1e/isec-miss.2.2.vcf.gz /tmp/ckUtnuSS1e/isec-miss.2.3.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools isec -R /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/isec-miss.1.regs.txt -n +1 /tmp/ckUtnuSS1e/isec-miss.2.1.vcf.gz /tmp/ckUtnuSS1e/isec-miss.2.2.vcf.gz /tmp/ckUtnuSS1e/isec-miss.2.3.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/ckUtnuSS1e/merge.exact.a.vcf.gz /tmp/ckUtnuSS1e/merge.exact.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/ckUtnuSS1e/merge.exact.a.vcf.gz /tmp/ckUtnuSS1e/merge.exact.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/ckUtnuSS1e/merge.exact.a.bcf /tmp/ckUtnuSS1e/merge.exact.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/ckUtnuSS1e/merge.exact.a.bcf /tmp/ckUtnuSS1e/merge.exact.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -m exact /tmp/ckUtnuSS1e/merge.exact.a.vcf.gz /tmp/ckUtnuSS1e/merge.exact.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -m exact /tmp/ckUtnuSS1e/merge.exact.a.vcf.gz /tmp/ckUtnuSS1e/merge.exact.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -m exact /tmp/ckUtnuSS1e/merge.exact.a.bcf /tmp/ckUtnuSS1e/merge.exact.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -m exact /tmp/ckUtnuSS1e/merge.exact.a.bcf /tmp/ckUtnuSS1e/merge.exact.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/ckUtnuSS1e/merge.broken-gvcf.a.vcf.gz /tmp/ckUtnuSS1e/merge.broken-gvcf.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/ckUtnuSS1e/merge.broken-gvcf.a.vcf.gz /tmp/ckUtnuSS1e/merge.broken-gvcf.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/ckUtnuSS1e/merge.broken-gvcf.a.bcf /tmp/ckUtnuSS1e/merge.broken-gvcf.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/ckUtnuSS1e/merge.broken-gvcf.a.bcf /tmp/ckUtnuSS1e/merge.broken-gvcf.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/ckUtnuSS1e/merge.symbolic.1.a.vcf.gz /tmp/ckUtnuSS1e/merge.symbolic.1.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/ckUtnuSS1e/merge.symbolic.1.a.vcf.gz /tmp/ckUtnuSS1e/merge.symbolic.1.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/ckUtnuSS1e/merge.symbolic.1.a.bcf /tmp/ckUtnuSS1e/merge.symbolic.1.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/ckUtnuSS1e/merge.symbolic.1.a.bcf /tmp/ckUtnuSS1e/merge.symbolic.1.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --merge none /tmp/ckUtnuSS1e/merge.multiallelics.1.a.vcf.gz /tmp/ckUtnuSS1e/merge.multiallelics.1.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --merge none /tmp/ckUtnuSS1e/merge.multiallelics.1.a.vcf.gz /tmp/ckUtnuSS1e/merge.multiallelics.1.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --merge none /tmp/ckUtnuSS1e/merge.multiallelics.1.a.bcf /tmp/ckUtnuSS1e/merge.multiallelics.1.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --merge none /tmp/ckUtnuSS1e/merge.multiallelics.1.a.bcf /tmp/ckUtnuSS1e/merge.multiallelics.1.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --merge both /tmp/ckUtnuSS1e/merge.multiallelics.1.a.vcf.gz /tmp/ckUtnuSS1e/merge.multiallelics.1.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --merge both /tmp/ckUtnuSS1e/merge.multiallelics.1.a.vcf.gz /tmp/ckUtnuSS1e/merge.multiallelics.1.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --merge both /tmp/ckUtnuSS1e/merge.multiallelics.1.a.bcf /tmp/ckUtnuSS1e/merge.multiallelics.1.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --merge both /tmp/ckUtnuSS1e/merge.multiallelics.1.a.bcf /tmp/ckUtnuSS1e/merge.multiallelics.1.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --merge none /tmp/ckUtnuSS1e/merge.12.a.vcf.gz /tmp/ckUtnuSS1e/merge.12.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --merge none /tmp/ckUtnuSS1e/merge.12.a.vcf.gz /tmp/ckUtnuSS1e/merge.12.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --merge none /tmp/ckUtnuSS1e/merge.12.a.bcf /tmp/ckUtnuSS1e/merge.12.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --merge none /tmp/ckUtnuSS1e/merge.12.a.bcf /tmp/ckUtnuSS1e/merge.12.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --merge both /tmp/ckUtnuSS1e/merge.12.a.vcf.gz /tmp/ckUtnuSS1e/merge.12.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --merge both /tmp/ckUtnuSS1e/merge.12.a.vcf.gz /tmp/ckUtnuSS1e/merge.12.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --merge both /tmp/ckUtnuSS1e/merge.12.a.bcf /tmp/ckUtnuSS1e/merge.12.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --merge both /tmp/ckUtnuSS1e/merge.12.a.bcf /tmp/ckUtnuSS1e/merge.12.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/ckUtnuSS1e/merge.phased.1.a.vcf.gz /tmp/ckUtnuSS1e/merge.phased.1.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/ckUtnuSS1e/merge.phased.1.a.vcf.gz /tmp/ckUtnuSS1e/merge.phased.1.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/ckUtnuSS1e/merge.phased.1.a.bcf /tmp/ckUtnuSS1e/merge.phased.1.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/ckUtnuSS1e/merge.phased.1.a.bcf /tmp/ckUtnuSS1e/merge.phased.1.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/ckUtnuSS1e/merge.11.a.vcf.gz /tmp/ckUtnuSS1e/merge.11.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/ckUtnuSS1e/merge.11.a.vcf.gz /tmp/ckUtnuSS1e/merge.11.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/ckUtnuSS1e/merge.11.a.bcf /tmp/ckUtnuSS1e/merge.11.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/ckUtnuSS1e/merge.11.a.bcf /tmp/ckUtnuSS1e/merge.11.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -i AF:join /tmp/ckUtnuSS1e/merge.join.a.vcf.gz /tmp/ckUtnuSS1e/merge.join.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -i AF:join /tmp/ckUtnuSS1e/merge.join.a.vcf.gz /tmp/ckUtnuSS1e/merge.join.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -i AF:join /tmp/ckUtnuSS1e/merge.join.a.bcf /tmp/ckUtnuSS1e/merge.join.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -i AF:join /tmp/ckUtnuSS1e/merge.join.a.bcf /tmp/ckUtnuSS1e/merge.join.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-single /tmp/ckUtnuSS1e/merge.LPL.a.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-single /tmp/ckUtnuSS1e/merge.LPL.a.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-single /tmp/ckUtnuSS1e/merge.LPL.a.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-single /tmp/ckUtnuSS1e/merge.LPL.a.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples /tmp/ckUtnuSS1e/merge.LPL.a.vcf.gz /tmp/ckUtnuSS1e/merge.LPL.b.vcf.gz /tmp/ckUtnuSS1e/merge.LPL.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples /tmp/ckUtnuSS1e/merge.LPL.a.vcf.gz /tmp/ckUtnuSS1e/merge.LPL.b.vcf.gz /tmp/ckUtnuSS1e/merge.LPL.c.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples /tmp/ckUtnuSS1e/merge.LPL.a.bcf /tmp/ckUtnuSS1e/merge.LPL.b.bcf /tmp/ckUtnuSS1e/merge.LPL.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples /tmp/ckUtnuSS1e/merge.LPL.a.bcf /tmp/ckUtnuSS1e/merge.LPL.b.bcf /tmp/ckUtnuSS1e/merge.LPL.c.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -L 1 /tmp/ckUtnuSS1e/merge.LPL.a.vcf.gz /tmp/ckUtnuSS1e/merge.LPL.b.vcf.gz /tmp/ckUtnuSS1e/merge.LPL.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -L 1 /tmp/ckUtnuSS1e/merge.LPL.a.vcf.gz /tmp/ckUtnuSS1e/merge.LPL.b.vcf.gz /tmp/ckUtnuSS1e/merge.LPL.c.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -L 1 /tmp/ckUtnuSS1e/merge.LPL.a.bcf /tmp/ckUtnuSS1e/merge.LPL.b.bcf /tmp/ckUtnuSS1e/merge.LPL.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -L 1 /tmp/ckUtnuSS1e/merge.LPL.a.bcf /tmp/ckUtnuSS1e/merge.LPL.b.bcf /tmp/ckUtnuSS1e/merge.LPL.c.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -L 2 /tmp/ckUtnuSS1e/merge.LPL.a.vcf.gz /tmp/ckUtnuSS1e/merge.LPL.b.vcf.gz /tmp/ckUtnuSS1e/merge.LPL.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -L 2 /tmp/ckUtnuSS1e/merge.LPL.a.vcf.gz /tmp/ckUtnuSS1e/merge.LPL.b.vcf.gz /tmp/ckUtnuSS1e/merge.LPL.c.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -L 2 /tmp/ckUtnuSS1e/merge.LPL.a.bcf /tmp/ckUtnuSS1e/merge.LPL.b.bcf /tmp/ckUtnuSS1e/merge.LPL.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -L 2 /tmp/ckUtnuSS1e/merge.LPL.a.bcf /tmp/ckUtnuSS1e/merge.LPL.b.bcf /tmp/ckUtnuSS1e/merge.LPL.c.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -L 3 /tmp/ckUtnuSS1e/merge.LPL.a.vcf.gz /tmp/ckUtnuSS1e/merge.LPL.b.vcf.gz /tmp/ckUtnuSS1e/merge.LPL.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -L 3 /tmp/ckUtnuSS1e/merge.LPL.a.vcf.gz /tmp/ckUtnuSS1e/merge.LPL.b.vcf.gz /tmp/ckUtnuSS1e/merge.LPL.c.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -L 3 /tmp/ckUtnuSS1e/merge.LPL.a.bcf /tmp/ckUtnuSS1e/merge.LPL.b.bcf /tmp/ckUtnuSS1e/merge.LPL.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -L 3 /tmp/ckUtnuSS1e/merge.LPL.a.bcf /tmp/ckUtnuSS1e/merge.LPL.b.bcf /tmp/ckUtnuSS1e/merge.LPL.c.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -L 4 /tmp/ckUtnuSS1e/merge.LPL.a.vcf.gz /tmp/ckUtnuSS1e/merge.LPL.b.vcf.gz /tmp/ckUtnuSS1e/merge.LPL.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -L 4 /tmp/ckUtnuSS1e/merge.LPL.a.vcf.gz /tmp/ckUtnuSS1e/merge.LPL.b.vcf.gz /tmp/ckUtnuSS1e/merge.LPL.c.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -L 4 /tmp/ckUtnuSS1e/merge.LPL.a.bcf /tmp/ckUtnuSS1e/merge.LPL.b.bcf /tmp/ckUtnuSS1e/merge.LPL.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -L 4 /tmp/ckUtnuSS1e/merge.LPL.a.bcf /tmp/ckUtnuSS1e/merge.LPL.b.bcf /tmp/ckUtnuSS1e/merge.LPL.c.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -L 5 /tmp/ckUtnuSS1e/merge.LPL.a.vcf.gz /tmp/ckUtnuSS1e/merge.LPL.b.vcf.gz /tmp/ckUtnuSS1e/merge.LPL.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -L 5 /tmp/ckUtnuSS1e/merge.LPL.a.vcf.gz /tmp/ckUtnuSS1e/merge.LPL.b.vcf.gz /tmp/ckUtnuSS1e/merge.LPL.c.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -L 5 /tmp/ckUtnuSS1e/merge.LPL.a.bcf /tmp/ckUtnuSS1e/merge.LPL.b.bcf /tmp/ckUtnuSS1e/merge.LPL.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -L 5 /tmp/ckUtnuSS1e/merge.LPL.a.bcf /tmp/ckUtnuSS1e/merge.LPL.b.bcf /tmp/ckUtnuSS1e/merge.LPL.c.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples /tmp/ckUtnuSS1e/merge.a.vcf.gz /tmp/ckUtnuSS1e/merge.b.vcf.gz /tmp/ckUtnuSS1e/merge.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples /tmp/ckUtnuSS1e/merge.a.vcf.gz /tmp/ckUtnuSS1e/merge.b.vcf.gz /tmp/ckUtnuSS1e/merge.c.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples /tmp/ckUtnuSS1e/merge.a.bcf /tmp/ckUtnuSS1e/merge.b.bcf /tmp/ckUtnuSS1e/merge.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples /tmp/ckUtnuSS1e/merge.a.bcf /tmp/ckUtnuSS1e/merge.b.bcf /tmp/ckUtnuSS1e/merge.c.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -Fx /tmp/ckUtnuSS1e/merge.a.vcf.gz /tmp/ckUtnuSS1e/merge.b.vcf.gz /tmp/ckUtnuSS1e/merge.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -Fx /tmp/ckUtnuSS1e/merge.a.vcf.gz /tmp/ckUtnuSS1e/merge.b.vcf.gz /tmp/ckUtnuSS1e/merge.c.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -Fx /tmp/ckUtnuSS1e/merge.a.bcf /tmp/ckUtnuSS1e/merge.b.bcf /tmp/ckUtnuSS1e/merge.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -Fx /tmp/ckUtnuSS1e/merge.a.bcf /tmp/ckUtnuSS1e/merge.b.bcf /tmp/ckUtnuSS1e/merge.c.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -0 /tmp/ckUtnuSS1e/merge.a.vcf.gz /tmp/ckUtnuSS1e/merge.b.vcf.gz /tmp/ckUtnuSS1e/merge.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -0 /tmp/ckUtnuSS1e/merge.a.vcf.gz /tmp/ckUtnuSS1e/merge.b.vcf.gz /tmp/ckUtnuSS1e/merge.c.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -0 /tmp/ckUtnuSS1e/merge.a.bcf /tmp/ckUtnuSS1e/merge.b.bcf /tmp/ckUtnuSS1e/merge.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -0 /tmp/ckUtnuSS1e/merge.a.bcf /tmp/ckUtnuSS1e/merge.b.bcf /tmp/ckUtnuSS1e/merge.c.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -m none /tmp/ckUtnuSS1e/merge.2.a.vcf.gz /tmp/ckUtnuSS1e/merge.2.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -m none /tmp/ckUtnuSS1e/merge.2.a.vcf.gz /tmp/ckUtnuSS1e/merge.2.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -m none /tmp/ckUtnuSS1e/merge.2.a.bcf /tmp/ckUtnuSS1e/merge.2.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -m none /tmp/ckUtnuSS1e/merge.2.a.bcf /tmp/ckUtnuSS1e/merge.2.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -m both /tmp/ckUtnuSS1e/merge.2.a.vcf.gz /tmp/ckUtnuSS1e/merge.2.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -m both /tmp/ckUtnuSS1e/merge.2.a.vcf.gz /tmp/ckUtnuSS1e/merge.2.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -m both /tmp/ckUtnuSS1e/merge.2.a.bcf /tmp/ckUtnuSS1e/merge.2.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -m both /tmp/ckUtnuSS1e/merge.2.a.bcf /tmp/ckUtnuSS1e/merge.2.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -m all /tmp/ckUtnuSS1e/merge.2.a.vcf.gz /tmp/ckUtnuSS1e/merge.2.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -m all /tmp/ckUtnuSS1e/merge.2.a.vcf.gz /tmp/ckUtnuSS1e/merge.2.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -m all /tmp/ckUtnuSS1e/merge.2.a.bcf /tmp/ckUtnuSS1e/merge.2.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -m all /tmp/ckUtnuSS1e/merge.2.a.bcf /tmp/ckUtnuSS1e/merge.2.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -i TR:sum,TA:sum,TG:sum /tmp/ckUtnuSS1e/merge.3.a.vcf.gz /tmp/ckUtnuSS1e/merge.3.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -i TR:sum,TA:sum,TG:sum /tmp/ckUtnuSS1e/merge.3.a.vcf.gz /tmp/ckUtnuSS1e/merge.3.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -i TR:sum,TA:sum,TG:sum /tmp/ckUtnuSS1e/merge.3.a.bcf /tmp/ckUtnuSS1e/merge.3.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -i TR:sum,TA:sum,TG:sum /tmp/ckUtnuSS1e/merge.3.a.bcf /tmp/ckUtnuSS1e/merge.3.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -m id /tmp/ckUtnuSS1e/merge.4.a.vcf.gz /tmp/ckUtnuSS1e/merge.4.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -m id /tmp/ckUtnuSS1e/merge.4.a.vcf.gz /tmp/ckUtnuSS1e/merge.4.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -m id /tmp/ckUtnuSS1e/merge.4.a.bcf /tmp/ckUtnuSS1e/merge.4.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -m id /tmp/ckUtnuSS1e/merge.4.a.bcf /tmp/ckUtnuSS1e/merge.4.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - /tmp/ckUtnuSS1e/gvcf.merge.1.vcf.gz /tmp/ckUtnuSS1e/gvcf.merge.2.vcf.gz /tmp/ckUtnuSS1e/gvcf.merge.3.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - /tmp/ckUtnuSS1e/gvcf.merge.1.vcf.gz /tmp/ckUtnuSS1e/gvcf.merge.2.vcf.gz /tmp/ckUtnuSS1e/gvcf.merge.3.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - /tmp/ckUtnuSS1e/gvcf.merge.1.bcf /tmp/ckUtnuSS1e/gvcf.merge.2.bcf /tmp/ckUtnuSS1e/gvcf.merge.3.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - /tmp/ckUtnuSS1e/gvcf.merge.1.bcf /tmp/ckUtnuSS1e/gvcf.merge.2.bcf /tmp/ckUtnuSS1e/gvcf.merge.3.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - /tmp/ckUtnuSS1e/merge.gvcf.2.a.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.2.b.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.2.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - /tmp/ckUtnuSS1e/merge.gvcf.2.a.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.2.b.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.2.c.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - -m both,* /tmp/ckUtnuSS1e/merge.gvcf.2.a.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.2.b.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.2.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - -m both,* /tmp/ckUtnuSS1e/merge.gvcf.2.a.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.2.b.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.2.c.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - -m both,** /tmp/ckUtnuSS1e/merge.gvcf.2.a.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.2.b.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.2.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - -m both,** /tmp/ckUtnuSS1e/merge.gvcf.2.a.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.2.b.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.2.c.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - -i SRC:join /tmp/ckUtnuSS1e/merge.gvcf.3.a.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.3.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - -i SRC:join /tmp/ckUtnuSS1e/merge.gvcf.3.a.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.3.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - /tmp/ckUtnuSS1e/merge.gvcf.4.a.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.4.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - /tmp/ckUtnuSS1e/merge.gvcf.4.a.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.4.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - /tmp/ckUtnuSS1e/merge.gvcf.4.a.bcf /tmp/ckUtnuSS1e/merge.gvcf.4.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - /tmp/ckUtnuSS1e/merge.gvcf.4.a.bcf /tmp/ckUtnuSS1e/merge.gvcf.4.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/ckUtnuSS1e/merge.5.a.vcf.gz /tmp/ckUtnuSS1e/merge.5.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/ckUtnuSS1e/merge.5.a.vcf.gz /tmp/ckUtnuSS1e/merge.5.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/ckUtnuSS1e/merge.5.a.bcf /tmp/ckUtnuSS1e/merge.5.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/ckUtnuSS1e/merge.5.a.bcf /tmp/ckUtnuSS1e/merge.5.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/ckUtnuSS1e/merge.6.a.vcf.gz /tmp/ckUtnuSS1e/merge.6.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/ckUtnuSS1e/merge.6.a.vcf.gz /tmp/ckUtnuSS1e/merge.6.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/ckUtnuSS1e/merge.6.a.bcf /tmp/ckUtnuSS1e/merge.6.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/ckUtnuSS1e/merge.6.a.bcf /tmp/ckUtnuSS1e/merge.6.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - /tmp/ckUtnuSS1e/merge.gvcf.7.a.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.7.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - /tmp/ckUtnuSS1e/merge.gvcf.7.a.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.7.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - /tmp/ckUtnuSS1e/merge.gvcf.7.a.bcf /tmp/ckUtnuSS1e/merge.gvcf.7.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - /tmp/ckUtnuSS1e/merge.gvcf.7.a.bcf /tmp/ckUtnuSS1e/merge.gvcf.7.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - /tmp/ckUtnuSS1e/merge.gvcf.8.a.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.8.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - /tmp/ckUtnuSS1e/merge.gvcf.8.a.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.8.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - /tmp/ckUtnuSS1e/merge.gvcf.8.a.bcf /tmp/ckUtnuSS1e/merge.gvcf.8.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - /tmp/ckUtnuSS1e/merge.gvcf.8.a.bcf /tmp/ckUtnuSS1e/merge.gvcf.8.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples /tmp/ckUtnuSS1e/merge.7.a.vcf.gz /tmp/ckUtnuSS1e/merge.7.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples /tmp/ckUtnuSS1e/merge.7.a.vcf.gz /tmp/ckUtnuSS1e/merge.7.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples /tmp/ckUtnuSS1e/merge.7.a.bcf /tmp/ckUtnuSS1e/merge.7.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples /tmp/ckUtnuSS1e/merge.7.a.bcf /tmp/ckUtnuSS1e/merge.7.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa /tmp/ckUtnuSS1e/merge.gvcf.9a.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.9b.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.9c.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.9d.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa /tmp/ckUtnuSS1e/merge.gvcf.9a.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.9b.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.9c.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.9d.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa /tmp/ckUtnuSS1e/merge.gvcf.9a.bcf /tmp/ckUtnuSS1e/merge.gvcf.9b.bcf /tmp/ckUtnuSS1e/merge.gvcf.9c.bcf /tmp/ckUtnuSS1e/merge.gvcf.9d.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa /tmp/ckUtnuSS1e/merge.gvcf.9a.bcf /tmp/ckUtnuSS1e/merge.gvcf.9b.bcf /tmp/ckUtnuSS1e/merge.gvcf.9c.bcf /tmp/ckUtnuSS1e/merge.gvcf.9d.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa -r 22:21-23 /tmp/ckUtnuSS1e/merge.gvcf.9a.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.9b.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.9c.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.9d.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa -r 22:21-23 /tmp/ckUtnuSS1e/merge.gvcf.9a.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.9b.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.9c.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.9d.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa -r 22:21-23 /tmp/ckUtnuSS1e/merge.gvcf.9a.bcf /tmp/ckUtnuSS1e/merge.gvcf.9b.bcf /tmp/ckUtnuSS1e/merge.gvcf.9c.bcf /tmp/ckUtnuSS1e/merge.gvcf.9d.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa -r 22:21-23 /tmp/ckUtnuSS1e/merge.gvcf.9a.bcf /tmp/ckUtnuSS1e/merge.gvcf.9b.bcf /tmp/ckUtnuSS1e/merge.gvcf.9c.bcf /tmp/ckUtnuSS1e/merge.gvcf.9d.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa /tmp/ckUtnuSS1e/merge.gvcf.9a.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.9b.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.9c.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.9d.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.9e.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa /tmp/ckUtnuSS1e/merge.gvcf.9a.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.9b.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.9c.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.9d.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.9e.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa /tmp/ckUtnuSS1e/merge.gvcf.9a.bcf /tmp/ckUtnuSS1e/merge.gvcf.9b.bcf /tmp/ckUtnuSS1e/merge.gvcf.9c.bcf /tmp/ckUtnuSS1e/merge.gvcf.9d.bcf /tmp/ckUtnuSS1e/merge.gvcf.9e.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa /tmp/ckUtnuSS1e/merge.gvcf.9a.bcf /tmp/ckUtnuSS1e/merge.gvcf.9b.bcf /tmp/ckUtnuSS1e/merge.gvcf.9c.bcf /tmp/ckUtnuSS1e/merge.gvcf.9d.bcf /tmp/ckUtnuSS1e/merge.gvcf.9e.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa -r 22:21-23 /tmp/ckUtnuSS1e/merge.gvcf.9a.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.9b.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.9c.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.9d.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.9e.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa -r 22:21-23 /tmp/ckUtnuSS1e/merge.gvcf.9a.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.9b.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.9c.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.9d.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.9e.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa -r 22:21-23 /tmp/ckUtnuSS1e/merge.gvcf.9a.bcf /tmp/ckUtnuSS1e/merge.gvcf.9b.bcf /tmp/ckUtnuSS1e/merge.gvcf.9c.bcf /tmp/ckUtnuSS1e/merge.gvcf.9d.bcf /tmp/ckUtnuSS1e/merge.gvcf.9e.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa -r 22:21-23 /tmp/ckUtnuSS1e/merge.gvcf.9a.bcf /tmp/ckUtnuSS1e/merge.gvcf.9b.bcf /tmp/ckUtnuSS1e/merge.gvcf.9c.bcf /tmp/ckUtnuSS1e/merge.gvcf.9d.bcf /tmp/ckUtnuSS1e/merge.gvcf.9e.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/ckUtnuSS1e/merge.gvcf.10.a.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.10.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/ckUtnuSS1e/merge.gvcf.10.a.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.10.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/ckUtnuSS1e/merge.gvcf.10.a.bcf /tmp/ckUtnuSS1e/merge.gvcf.10.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/ckUtnuSS1e/merge.gvcf.10.a.bcf /tmp/ckUtnuSS1e/merge.gvcf.10.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -m none /tmp/ckUtnuSS1e/merge.gvcf.10.a.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.10.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -m none /tmp/ckUtnuSS1e/merge.gvcf.10.a.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.10.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -m none /tmp/ckUtnuSS1e/merge.gvcf.10.a.bcf /tmp/ckUtnuSS1e/merge.gvcf.10.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -m none /tmp/ckUtnuSS1e/merge.gvcf.10.a.bcf /tmp/ckUtnuSS1e/merge.gvcf.10.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/merge.gvcf.10.fa /tmp/ckUtnuSS1e/merge.gvcf.10.a.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.10.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/merge.gvcf.10.fa /tmp/ckUtnuSS1e/merge.gvcf.10.a.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.10.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/merge.gvcf.10.fa /tmp/ckUtnuSS1e/merge.gvcf.10.a.bcf /tmp/ckUtnuSS1e/merge.gvcf.10.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/merge.gvcf.10.fa /tmp/ckUtnuSS1e/merge.gvcf.10.a.bcf /tmp/ckUtnuSS1e/merge.gvcf.10.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/merge.gvcf.10.fa -m none /tmp/ckUtnuSS1e/merge.gvcf.10.a.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.10.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/merge.gvcf.10.fa -m none /tmp/ckUtnuSS1e/merge.gvcf.10.a.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.10.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/merge.gvcf.10.fa -m none /tmp/ckUtnuSS1e/merge.gvcf.10.a.bcf /tmp/ckUtnuSS1e/merge.gvcf.10.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/merge.gvcf.10.fa -m none /tmp/ckUtnuSS1e/merge.gvcf.10.a.bcf /tmp/ckUtnuSS1e/merge.gvcf.10.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/ckUtnuSS1e/merge.noidx.a.vcf.gz /tmp/ckUtnuSS1e/merge.noidx.b.vcf.gz /tmp/ckUtnuSS1e/merge.noidx.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/ckUtnuSS1e/merge.noidx.a.vcf.gz /tmp/ckUtnuSS1e/merge.noidx.b.vcf.gz /tmp/ckUtnuSS1e/merge.noidx.c.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/ckUtnuSS1e/merge.noidx.a.bcf /tmp/ckUtnuSS1e/merge.noidx.b.bcf /tmp/ckUtnuSS1e/merge.noidx.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/ckUtnuSS1e/merge.noidx.a.bcf /tmp/ckUtnuSS1e/merge.noidx.b.bcf /tmp/ckUtnuSS1e/merge.noidx.c.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --no-index /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/merge.noidx.a.vcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/merge.noidx.b.vcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/merge.noidx.c.vcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --no-index /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/merge.noidx.a.vcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/merge.noidx.b.vcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/merge.noidx.c.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --no-index /tmp/ckUtnuSS1e/merge.noidx.a.bcf /tmp/ckUtnuSS1e/merge.noidx.b.bcf /tmp/ckUtnuSS1e/merge.noidx.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --no-index /tmp/ckUtnuSS1e/merge.noidx.a.bcf /tmp/ckUtnuSS1e/merge.noidx.b.bcf /tmp/ckUtnuSS1e/merge.noidx.c.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/ckUtnuSS1e/merge.8.a.vcf.gz /tmp/ckUtnuSS1e/merge.8.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/ckUtnuSS1e/merge.8.a.vcf.gz /tmp/ckUtnuSS1e/merge.8.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/ckUtnuSS1e/merge.8.a.bcf /tmp/ckUtnuSS1e/merge.8.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/ckUtnuSS1e/merge.8.a.bcf /tmp/ckUtnuSS1e/merge.8.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -i AN:sum,AC:sum /tmp/ckUtnuSS1e/merge.8.a.vcf.gz /tmp/ckUtnuSS1e/merge.8.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -i AN:sum,AC:sum /tmp/ckUtnuSS1e/merge.8.a.vcf.gz /tmp/ckUtnuSS1e/merge.8.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -i AN:sum,AC:sum /tmp/ckUtnuSS1e/merge.8.a.bcf /tmp/ckUtnuSS1e/merge.8.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -i AN:sum,AC:sum /tmp/ckUtnuSS1e/merge.8.a.bcf /tmp/ckUtnuSS1e/merge.8.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/ckUtnuSS1e/merge.9.a.vcf.gz /tmp/ckUtnuSS1e/merge.9.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/ckUtnuSS1e/merge.9.a.vcf.gz /tmp/ckUtnuSS1e/merge.9.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/ckUtnuSS1e/merge.9.a.bcf /tmp/ckUtnuSS1e/merge.9.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/ckUtnuSS1e/merge.9.a.bcf /tmp/ckUtnuSS1e/merge.9.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -i AN:sum,AC:sum /tmp/ckUtnuSS1e/merge.9.a.vcf.gz /tmp/ckUtnuSS1e/merge.9.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -i AN:sum,AC:sum /tmp/ckUtnuSS1e/merge.9.a.vcf.gz /tmp/ckUtnuSS1e/merge.9.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -i AN:sum,AC:sum /tmp/ckUtnuSS1e/merge.9.a.bcf /tmp/ckUtnuSS1e/merge.9.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -i AN:sum,AC:sum /tmp/ckUtnuSS1e/merge.9.a.bcf /tmp/ckUtnuSS1e/merge.9.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -m none /tmp/ckUtnuSS1e/merge.10.a.vcf.gz /tmp/ckUtnuSS1e/merge.10.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -m none /tmp/ckUtnuSS1e/merge.10.a.vcf.gz /tmp/ckUtnuSS1e/merge.10.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -m none /tmp/ckUtnuSS1e/merge.10.a.bcf /tmp/ckUtnuSS1e/merge.10.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -m none /tmp/ckUtnuSS1e/merge.10.a.bcf /tmp/ckUtnuSS1e/merge.10.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -m both /tmp/ckUtnuSS1e/merge.10.a.vcf.gz /tmp/ckUtnuSS1e/merge.10.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -m both /tmp/ckUtnuSS1e/merge.10.a.vcf.gz /tmp/ckUtnuSS1e/merge.10.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -m both /tmp/ckUtnuSS1e/merge.10.a.bcf /tmp/ckUtnuSS1e/merge.10.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -m both /tmp/ckUtnuSS1e/merge.10.a.bcf /tmp/ckUtnuSS1e/merge.10.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -m snp-ins-del /tmp/ckUtnuSS1e/merge.10.a.vcf.gz /tmp/ckUtnuSS1e/merge.10.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -m snp-ins-del /tmp/ckUtnuSS1e/merge.10.a.vcf.gz /tmp/ckUtnuSS1e/merge.10.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -m snp-ins-del /tmp/ckUtnuSS1e/merge.10.a.bcf /tmp/ckUtnuSS1e/merge.10.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -m snp-ins-del /tmp/ckUtnuSS1e/merge.10.a.bcf /tmp/ckUtnuSS1e/merge.10.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - /tmp/ckUtnuSS1e/merge.mrules.1.a.vcf.gz /tmp/ckUtnuSS1e/merge.mrules.1.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - /tmp/ckUtnuSS1e/merge.mrules.1.a.vcf.gz /tmp/ckUtnuSS1e/merge.mrules.1.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - /tmp/ckUtnuSS1e/merge.mrules.1.a.bcf /tmp/ckUtnuSS1e/merge.mrules.1.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - /tmp/ckUtnuSS1e/merge.mrules.1.a.bcf /tmp/ckUtnuSS1e/merge.mrules.1.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - -M AD:.,PL:. /tmp/ckUtnuSS1e/merge.mrules.1.a.vcf.gz /tmp/ckUtnuSS1e/merge.mrules.1.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - -M AD:.,PL:. /tmp/ckUtnuSS1e/merge.mrules.1.a.vcf.gz /tmp/ckUtnuSS1e/merge.mrules.1.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - -M AD:.,PL:. /tmp/ckUtnuSS1e/merge.mrules.1.a.bcf /tmp/ckUtnuSS1e/merge.mrules.1.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - -M AD:.,PL:. /tmp/ckUtnuSS1e/merge.mrules.1.a.bcf /tmp/ckUtnuSS1e/merge.mrules.1.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - /tmp/ckUtnuSS1e/merge.gvcf.5.a.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.5.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - /tmp/ckUtnuSS1e/merge.gvcf.5.a.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.5.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - /tmp/ckUtnuSS1e/merge.gvcf.5.a.bcf /tmp/ckUtnuSS1e/merge.gvcf.5.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - /tmp/ckUtnuSS1e/merge.gvcf.5.a.bcf /tmp/ckUtnuSS1e/merge.gvcf.5.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - --merge none /tmp/ckUtnuSS1e/merge.gvcf.5.a.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.5.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - --merge none /tmp/ckUtnuSS1e/merge.gvcf.5.a.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.5.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - --merge none /tmp/ckUtnuSS1e/merge.gvcf.5.a.bcf /tmp/ckUtnuSS1e/merge.gvcf.5.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - --merge none /tmp/ckUtnuSS1e/merge.gvcf.5.a.bcf /tmp/ckUtnuSS1e/merge.gvcf.5.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - /tmp/ckUtnuSS1e/merge.gvcf.11.a.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.11.b.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.11.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - /tmp/ckUtnuSS1e/merge.gvcf.11.a.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.11.b.vcf.gz /tmp/ckUtnuSS1e/merge.gvcf.11.c.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - /tmp/ckUtnuSS1e/merge.gvcf.11.a.bcf /tmp/ckUtnuSS1e/merge.gvcf.11.b.bcf /tmp/ckUtnuSS1e/merge.gvcf.11.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - /tmp/ckUtnuSS1e/merge.gvcf.11.a.bcf /tmp/ckUtnuSS1e/merge.gvcf.11.b.bcf /tmp/ckUtnuSS1e/merge.gvcf.11.c.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '[%CHROM\t%POS\t%GT\t%LAA\t%smpl_count(FMT/LAA)\n]\n' /tmp/ckUtnuSS1e/smpl-count.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/smpl-count.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '[%CHROM\t%POS\t%GT\t%LAA\t%smpl_count(FMT/LAA)\n]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '[%CHROM\t%POS\t%GT\t%LAA\t%smpl_count(FMT/LAA)\n]\n' -i'smpl_count(LAA)==1' /tmp/ckUtnuSS1e/smpl-count.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/smpl-count.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '[%CHROM\t%POS\t%GT\t%LAA\t%smpl_count(FMT/LAA)\n]\n' -i'smpl_count(LAA)==1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '[%CHROM\t%POS\t%GT\t%LAA\t%smpl_count(FMT/LAA)\n]\n' -i'smpl_count(LAA)==1 & GT="hom"' /tmp/ckUtnuSS1e/smpl-count.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/smpl-count.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '[%CHROM\t%POS\t%GT\t%LAA\t%smpl_count(FMT/LAA)\n]\n' -i'smpl_count(LAA)==1 & GT="hom"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '[%CHROM\t%POS\t%GT\t%LAA\t%smpl_count(FMT/LAA)\n]\n' -i'GT="hom" & smpl_count(LAA)==1' /tmp/ckUtnuSS1e/smpl-count.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/smpl-count.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '[%CHROM\t%POS\t%GT\t%LAA\t%smpl_count(FMT/LAA)\n]\n' -i'GT="hom" & smpl_count(LAA)==1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%TAG' -i 'TAG[*]="."' /tmp/ckUtnuSS1e/query.filter.15.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter.15.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%TAG' -i 'TAG[*]="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%TAG' -i 'TAG[*]~"\."' /tmp/ckUtnuSS1e/query.filter.15.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter.15.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%TAG' -i 'TAG[*]~"\."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%TAG' -i 'TAG[*]!="."' /tmp/ckUtnuSS1e/query.filter.15.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter.15.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%TAG' -i 'TAG[*]!="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%TAG' -i 'TAG[*]!~"\."' /tmp/ckUtnuSS1e/query.filter.15.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter.15.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%TAG' -i 'TAG[*]!~"\."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM %POS %ID %REF %ALT %QUAL %FILTER \t %INFO/CHROM %INFO/POS %INFO/ID %INFO/REF %INFO/ALT %INFO/QUAL %INFO/FILTER' /tmp/ckUtnuSS1e/query.3.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.3.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM %POS %ID %REF %ALT %QUAL %FILTER \t %INFO/CHROM %INFO/POS %INFO/ID %INFO/REF %INFO/ALT %INFO/QUAL %INFO/FILTER'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '[ %CHROM] \t [ %POS] \t [ %ID] \t [ %REF] \t [ %ALT] \t [ %QUAL] \t [ %FILTER]' /tmp/ckUtnuSS1e/query.3.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.3.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '[ %CHROM] \t [ %POS] \t [ %ID] \t [ %REF] \t [ %ALT] \t [ %QUAL] \t [ %FILTER]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '[ %/CHROM] \t [ %/POS] \t [ %/ID] \t [ %/REF] \t [ %/ALT] \t [ %/QUAL] \t [ %/FILTER]' /tmp/ckUtnuSS1e/query.3.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.3.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '[ %/CHROM] \t [ %/POS] \t [ %/ID] \t [ %/REF] \t [ %/ALT] \t [ %/QUAL] \t [ %/FILTER]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS [ %SAMPLE %GT]' /tmp/ckUtnuSS1e/query.filter.14.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter.14.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS [ %SAMPLE %GT]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS [ %SAMPLE %GT]' -i'GT="."' /tmp/ckUtnuSS1e/query.filter.14.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter.14.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS [ %SAMPLE %GT]' -i'GT="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS [ %SAMPLE %GT]' -i'GT="0|1"' /tmp/ckUtnuSS1e/query.filter.14.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter.14.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS [ %SAMPLE %GT]' -i'GT="0|1"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS\t%INFO/AD\t%SUM(INFO/AD)' /tmp/ckUtnuSS1e/query.func.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.func.1.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS\t%INFO/AD\t%SUM(INFO/AD)'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS\t[%AD ]\t%SUM(FORMAT/AD)' /tmp/ckUtnuSS1e/query.func.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.func.1.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS\t[%AD ]\t%SUM(FORMAT/AD)'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS\t[%AD ]\t[ %SUM(FORMAT/AD)]' /tmp/ckUtnuSS1e/query.func.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.func.1.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS\t[%AD ]\t[ %SUM(FORMAT/AD)]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS\t[%AD ]\t[ %sSUM(FORMAT/AD)]' /tmp/ckUtnuSS1e/query.func.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.func.1.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS\t[%AD ]\t[ %sSUM(FORMAT/AD)]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM\t%POS\t%CLNREVSTAT\n' -i'CLNREVSTAT="criteria_provided,_conflicting_interpretations"' /tmp/ckUtnuSS1e/query.string.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.string.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM\t%POS\t%CLNREVSTAT\n' -i'CLNREVSTAT="criteria_provided,_conflicting_interpretations"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM\t%POS\t%CLNREVSTAT\n' -i'CLNREVSTAT="criteria_provided" || CLNREVSTAT="_conflicting_interpretations"' /tmp/ckUtnuSS1e/query.string.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.string.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM\t%POS\t%CLNREVSTAT\n' -i'CLNREVSTAT="criteria_provided" || CLNREVSTAT="_conflicting_interpretations"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM\t%POS\t%CLNREVSTAT\n' -i'CLNREVSTAT="criteria_provided" && CLNREVSTAT="_conflicting_interpretations"' /tmp/ckUtnuSS1e/query.string.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.string.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM\t%POS\t%CLNREVSTAT\n' -i'CLNREVSTAT="criteria_provided" && CLNREVSTAT="_conflicting_interpretations"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM\t%POS\t%INFO/STR\n' -i'INFO/STR=@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.string.2.1.txt' /tmp/ckUtnuSS1e/query.string.2.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.string.2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM\t%POS\t%INFO/STR\n' -i'INFO/STR=@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.string.2.1.txt'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM\t%POS[\t%STR]\n' -i'FMT/STR=@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.string.2.2.txt' /tmp/ckUtnuSS1e/query.string.2.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.string.2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM\t%POS[\t%STR]\n' -i'FMT/STR=@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.string.2.2.txt'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM\t%POS\t%REF\t%ALT\t%DP4\t%AN[\t%GT\t%TGT]\n' /tmp/ckUtnuSS1e/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM\t%POS\t%REF\t%ALT\t%DP4\t%AN[\t%GT\t%TGT]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%RSX\t%VKX\n' /tmp/ckUtnuSS1e/query.variantkey.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.variantkey.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%RSX\t%VKX\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%XRI\n' -i'XRI[*]>1111' /tmp/ckUtnuSS1e/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%XRI\n' -i'XRI[*]>1111'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%XRF\n' -i'XRF[*]=2e6' /tmp/ckUtnuSS1e/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%XRF\n' -i'XRF[*]=2e6'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%XGS\n' -i'XGS[5]="PQR"' /tmp/ckUtnuSS1e/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%XGS\n' -i'XGS[5]="PQR"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%XGS\n' -i'XGS[*]="GHI"' /tmp/ckUtnuSS1e/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%XGS\n' -i'XGS[*]="GHI"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%XGS\n' -i'XGS[2]~"H"' /tmp/ckUtnuSS1e/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%XGS\n' -i'XGS[2]~"H"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%XGS\n' -i'XGS[3]!~"H" && XGS!="."' /tmp/ckUtnuSS1e/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%XGS\n' -i'XGS[3]!~"H" && XGS!="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%XGS\n' -i'XGS[*]~"H"' /tmp/ckUtnuSS1e/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%XGS\n' -i'XGS[*]~"H"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS %REF %ALT\n' -i'REF~"C" && ALT[*]~"CT"' /tmp/ckUtnuSS1e/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS %REF %ALT\n' -i'REF~"C" && ALT[*]~"CT"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS %REF %ALT\n' -i'N_ALT=2' /tmp/ckUtnuSS1e/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS %REF %ALT\n' -i'N_ALT=2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS %AN\n' -i'AN!=2*N_SAMPLES' /tmp/ckUtnuSS1e/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS %AN\n' -i'AN!=2*N_SAMPLES'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS[ %GL]\n' -i'min(abs(GL[*:0]))=10' /tmp/ckUtnuSS1e/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS[ %GL]\n' -i'min(abs(GL[*:0]))=10'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS %CIGAR\n' -i'strlen(CIGAR[*])=4' /tmp/ckUtnuSS1e/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS %CIGAR\n' -i'strlen(CIGAR[*])=4'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS[ %GT]\n' -i'AC[0]=3' /tmp/ckUtnuSS1e/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS[ %GT]\n' -i'AC[0]=3'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS[ %GT]\n' -i'AF[0]=3/4' /tmp/ckUtnuSS1e/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS[ %GT]\n' -i'AF[0]=3/4'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS[ %GT]\n' -i'MAC[0]=1' /tmp/ckUtnuSS1e/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS[ %GT]\n' -i'MAC[0]=1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS[ %GT]\n' -i'MAF[0]=1/4' /tmp/ckUtnuSS1e/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS[ %GT]\n' -i'MAF[0]=1/4'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'I8=%I8 I16=%I16 I32=%I32 IF=%IF IA8=%IA8 IA16=%IA16 IA32=%IA32 IAF=%IAF IA8=%IA8{1} IA16=%IA16{1} IA32=%IA32{1} IAF=%IAF{1} [ %F8:%F16:%F32:%FF]\n' /tmp/ckUtnuSS1e/view.vectors.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/view.vectors.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'I8=%I8 I16=%I16 I32=%I32 IF=%IF IA8=%IA8 IA16=%IA16 IA32=%IA32 IAF=%IAF IA8=%IA8{1} IA16=%IA16{1} IA32=%IA32{1} IAF=%IAF{1} [ %F8:%F16:%F32:%FF]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %GT\n]' -i'GT ="1"' /tmp/ckUtnuSS1e/query.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %GT\n]' -i'GT ="1"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %GT\n]' -i'GT!="1"' /tmp/ckUtnuSS1e/query.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %GT\n]' -i'GT!="1"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %GT\n]' -e'GT ="1"' /tmp/ckUtnuSS1e/query.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %GT\n]' -e'GT ="1"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %GT\n]' -e'GT!="1"' /tmp/ckUtnuSS1e/query.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %GT\n]' -e'GT!="1"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%XX_A %XX.A %XX.A0 %xx.a0\n' /tmp/ckUtnuSS1e/query.2.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%XX_A %XX.A %XX.A0 %xx.a0\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'IINT="."'  -f'%POS %IINT\n' /tmp/ckUtnuSS1e/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'IINT="."'  -f'%POS %IINT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'IINT!="."' -f'%POS %IINT\n' /tmp/ckUtnuSS1e/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'IINT!="."' -f'%POS %IINT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -e'IINT!="."' -f'%POS %IINT\n' /tmp/ckUtnuSS1e/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -e'IINT!="."' -f'%POS %IINT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -e'IINT="."'  -f'%POS %IINT\n' /tmp/ckUtnuSS1e/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -e'IINT="."'  -f'%POS %IINT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'IFLT="."'  -f'%POS %IFLT\n' /tmp/ckUtnuSS1e/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'IFLT="."'  -f'%POS %IFLT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'IFLT!="."' -f'%POS %IFLT\n' /tmp/ckUtnuSS1e/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'IFLT!="."' -f'%POS %IFLT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -e'IFLT!="."' -f'%POS %IFLT\n' /tmp/ckUtnuSS1e/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -e'IFLT!="."' -f'%POS %IFLT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -e'IFLT="."'  -f'%POS %IFLT\n' /tmp/ckUtnuSS1e/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -e'IFLT="."'  -f'%POS %IFLT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'ISTR="."'  -f'%POS %ISTR\n' /tmp/ckUtnuSS1e/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'ISTR="."'  -f'%POS %ISTR\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'ISTR!="."' -f'%POS %ISTR\n' /tmp/ckUtnuSS1e/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'ISTR!="."' -f'%POS %ISTR\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -e'ISTR="."'  -f'%POS %ISTR\n' /tmp/ckUtnuSS1e/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -e'ISTR="."'  -f'%POS %ISTR\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -e'ISTR!="."' -f'%POS %ISTR\n' /tmp/ckUtnuSS1e/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -e'ISTR!="."' -f'%POS %ISTR\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER="q11"' -f'%POS %ISTR\n' /tmp/ckUtnuSS1e/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER="q11"' -f'%POS %ISTR\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER="A"' -f'%POS %FILTER\n' /tmp/ckUtnuSS1e/filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER="A"' -f'%POS %FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER!="A"' -f'%POS %FILTER\n' /tmp/ckUtnuSS1e/filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER!="A"' -f'%POS %FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER~"A"' -f'%POS %FILTER\n' /tmp/ckUtnuSS1e/filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER~"A"' -f'%POS %FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER!~"A"' -f'%POS %FILTER\n' /tmp/ckUtnuSS1e/filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER!~"A"' -f'%POS %FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%LINE' /tmp/ckUtnuSS1e/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%LINE'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type="snp"' /tmp/ckUtnuSS1e/query.filter-type.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter-type.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type="snp"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type~"snp"' /tmp/ckUtnuSS1e/query.filter-type.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter-type.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type~"snp"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type!="snp"' /tmp/ckUtnuSS1e/query.filter-type.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter-type.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type!="snp"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type!~"snp"' /tmp/ckUtnuSS1e/query.filter-type.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter-type.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type!~"snp"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\n' -i'INFO/TYPE="xxx"' /tmp/ckUtnuSS1e/query.filter-type.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter-type.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\n' -i'INFO/TYPE="xxx"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%A_AF\t%B_AF\t%C_AF\n' -i'A_AF>=0.0001 || B_AF >= 0.0001 || C_AF >= 0.0001' /tmp/ckUtnuSS1e/filter-missing-floats.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/filter-missing-floats.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%A_AF\t%B_AF\t%C_AF\n' -i'A_AF>=0.0001 || B_AF >= 0.0001 || C_AF >= 0.0001'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%A_AF\t%B_AF\t%C_AF\n' -e'A_AF>=0.0001 || B_AF >= 0.0001 || C_AF >= 0.0001' /tmp/ckUtnuSS1e/filter-missing-floats.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/filter-missing-floats.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%A_AF\t%B_AF\t%C_AF\n' -e'A_AF>=0.0001 || B_AF >= 0.0001 || C_AF >= 0.0001'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FMT/FINT!="."' -f'[\t%FINT]\n' /tmp/ckUtnuSS1e/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FMT/FINT!="."' -f'[\t%FINT]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%GT]\n' -i'GT~"0/[1-9]" || GT~"[1-9]/0"' /tmp/ckUtnuSS1e/query.filter.2.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter.2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%GT]\n' -i'GT~"0/[1-9]" || GT~"[1-9]/0"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:1-2,4]="EE"' /tmp/ckUtnuSS1e/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:1-2,4]="EE"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'"EE"=FGS[*:1-2,4]' /tmp/ckUtnuSS1e/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'"EE"=FGS[*:1-2,4]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'FGI[*:1-2,5]=6' /tmp/ckUtnuSS1e/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'FGI[*:1-2,5]=6'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'6=FGI[*:1-2,5]' /tmp/ckUtnuSS1e/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'6=FGI[*:1-2,5]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGF\n]\n' -i'FGF[*:1-3,4]=5e-5' /tmp/ckUtnuSS1e/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGF\n]\n' -i'FGF[*:1-3,4]=5e-5'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:4]!="EE"' /tmp/ckUtnuSS1e/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:4]!="EE"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:4]="."' /tmp/ckUtnuSS1e/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:4]="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:4]!="."' /tmp/ckUtnuSS1e/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:4]!="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'FGI[*:1-2,5]="."' /tmp/ckUtnuSS1e/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'FGI[*:1-2,5]="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'FGI[*:1-2,5]!="."' /tmp/ckUtnuSS1e/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'FGI[*:1-2,5]!="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=1 | FMT/DP=2' /tmp/ckUtnuSS1e/filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=1 | FMT/DP=2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=1 | FMT/DP="."' /tmp/ckUtnuSS1e/filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=1 | FMT/DP="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=19' /tmp/ckUtnuSS1e/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=19'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=19 |  FMT/DP="."' /tmp/ckUtnuSS1e/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=19 |  FMT/DP="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=19 || FMT/DP="."' /tmp/ckUtnuSS1e/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=19 || FMT/DP="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP[0]=19' /tmp/ckUtnuSS1e/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP[0]=19'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP[0]!=19' /tmp/ckUtnuSS1e/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP[0]!=19'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %DP %GQ\n]\n' -i'FMT/DP=19 &  FMT/GQ=589' /tmp/ckUtnuSS1e/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %DP %GQ\n]\n' -i'FMT/DP=19 &  FMT/GQ=589'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %DP %GQ\n]\n' -i'FMT/DP=19 && FMT/GQ=1' /tmp/ckUtnuSS1e/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %DP %GQ\n]\n' -i'FMT/DP=19 && FMT/GQ=1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%GT\n]\n' -i'GT~"1" && GT~"2"' /tmp/ckUtnuSS1e/query.filter.3.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter.3.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%GT\n]\n' -i'GT~"1" && GT~"2"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%GT\n]\n' -i'GT~"1" &  GT~"2"' /tmp/ckUtnuSS1e/query.filter.3.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter.3.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%GT\n]\n' -i'GT~"1" &  GT~"2"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS[\t%GT]\n' -i'COUNT(GT="het")=1' /tmp/ckUtnuSS1e/query.filter.3.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter.3.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS[\t%GT]\n' -i'COUNT(GT="het")=1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS  %SAMPLE  %AD\n]\n' -i'AD[:0]+AD[:1] > 12' /tmp/ckUtnuSS1e/filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS  %SAMPLE  %AD\n]\n' -i'AD[:0]+AD[:1] > 12'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT[\t%GT]\n' -e'TYPE!="snp" || ALT="*"' /tmp/ckUtnuSS1e/query.filter.4.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter.4.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT[\t%GT]\n' -e'TYPE!="snp" || ALT="*"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%ID\n' -i 'ID=@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.56.out' /tmp/ckUtnuSS1e/view.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/view.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%ID\n' -i 'ID=@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.56.out'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%SAMPLE\t%GT\t%AD\n]' -i'GT="het" & binom(FMT/AD)>0.01' /tmp/ckUtnuSS1e/query.filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%SAMPLE\t%GT\t%AD\n]' -i'GT="het" & binom(FMT/AD)>0.01'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%SAMPLE\t%GT\t%AD\n]' -i'GT="het" & binom(FMT/AD[:0],FMT/AD[:1])>0.01' /tmp/ckUtnuSS1e/query.filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%SAMPLE\t%GT\t%AD\n]' -i'GT="het" & binom(FMT/AD[:0],FMT/AD[:1])>0.01'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%AD\n' -i'binom(INFO/AD[0],INFO/AD[1])>0.01' /tmp/ckUtnuSS1e/query.filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%AD\n' -i'binom(INFO/AD[0],INFO/AD[1])>0.01'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%GT\t%SAMPLE\t%AD\n]' -i'FMT/AD[GT]==10' /tmp/ckUtnuSS1e/query.filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%GT\t%SAMPLE\t%AD\n]' -i'FMT/AD[GT]==10'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%GT\t%SAMPLE\t%AD\n]' -i'sSUM(FMT/AD[GT])==210' /tmp/ckUtnuSS1e/query.filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%GT\t%SAMPLE\t%AD\n]' -i'sSUM(FMT/AD[GT])==210'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%GT\t%SAMPLE\t%AD\n]' -i'FMT/AD[0:GT]==30' /tmp/ckUtnuSS1e/query.filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%GT\t%SAMPLE\t%AD\n]' -i'FMT/AD[0:GT]==30'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%GT %TC %TS %TI %TF\n]' -i'FMT/TF[:GT]==1 && FMT/TF[:GT]==2' /tmp/ckUtnuSS1e/query.gtidx.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.gtidx.1.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%GT %TC %TS %TI %TF\n]' -i'FMT/TF[:GT]==1 && FMT/TF[:GT]==2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%GT %TC %TS %TI %TF\n]' -i'FMT/TI[:GT]==1 && FMT/TF[:GT]==2' /tmp/ckUtnuSS1e/query.gtidx.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.gtidx.1.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%GT %TC %TS %TI %TF\n]' -i'FMT/TI[:GT]==1 && FMT/TF[:GT]==2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%GT %TC %TS %TI %TF\n]' -i'FMT/TS[:GT]=="BB" && FMT/TS[:GT]=="CC"' /tmp/ckUtnuSS1e/query.gtidx.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.gtidx.1.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%GT %TC %TS %TI %TF\n]' -i'FMT/TS[:GT]=="BB" && FMT/TS[:GT]=="CC"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%GT %TC %TS %TI %TF\n]' -i'FMT/TC[:GT]=="B"  && FMT/TC[:GT]=="C"' /tmp/ckUtnuSS1e/query.gtidx.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.gtidx.1.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%GT %TC %TS %TI %TF\n]' -i'FMT/TC[:GT]=="B"  && FMT/TC[:GT]=="C"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%GT %TI\n]' -i'FMT/TI[:GT]=="."' /tmp/ckUtnuSS1e/query.gtidx.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.gtidx.1.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%GT %TI\n]' -i'FMT/TI[:GT]=="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM %POS\n' -i'CHROM="4"' /tmp/ckUtnuSS1e/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM %POS\n' -i'CHROM="4"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%TAG1\n' -i'(TAG1>=-129 && TAG1<=-120) || (TAG1>=-32769 && TAG1<=-32760)' /tmp/ckUtnuSS1e/query.negative.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.negative.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%TAG1\n' -i'(TAG1>=-129 && TAG1<=-120) || (TAG1>=-32769 && TAG1<=-32760)'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%TAGV1\n' -i'(TAGV1>=-129 && TAGV1<=-120) || (TAGV1>=-32769 && TAGV1<=-32760)' /tmp/ckUtnuSS1e/query.negative.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.negative.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%TAGV1\n' -i'(TAGV1>=-129 && TAGV1<=-120) || (TAGV1>=-32769 && TAGV1<=-32760)'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%TAG2\n' -i'(TAG2>=-129 && TAG2<=-120) || (TAG2>=-32769 && TAG2<=-32760)' /tmp/ckUtnuSS1e/query.negative.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.negative.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%TAG2\n' -i'(TAG2>=-129 && TAG2<=-120) || (TAG2>=-32769 && TAG2<=-32760)'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%TAGV2\n' -i'(TAGV2>=-129 && TAGV2<=-120) || (TAGV2>=-32769 && TAGV2<=-32760)' /tmp/ckUtnuSS1e/query.negative.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.negative.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%TAGV2\n' -i'(TAGV2>=-129 && TAGV2<=-120) || (TAGV2>=-32769 && TAGV2<=-32760)'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%SAMPLE\t%GQ\n]' -i'N_PASS(GQ<20)==1' /tmp/ckUtnuSS1e/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%SAMPLE\t%GQ\n]' -i'N_PASS(GQ<20)==1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -i'N_PASS(GT="alt")==1' /tmp/ckUtnuSS1e/query.filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -i'N_PASS(GT="alt")==1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -i'N_PASS(GT="alt")!=1' /tmp/ckUtnuSS1e/query.filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -i'N_PASS(GT="alt")!=1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -e'N_PASS(GT="alt")==1' /tmp/ckUtnuSS1e/query.filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -e'N_PASS(GT="alt")==1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -e'N_PASS(GT="alt")!=1' /tmp/ckUtnuSS1e/query.filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -e'N_PASS(GT="alt")!=1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM\t%POS\t%INFO\t%FORMAT\n' -s D,C /tmp/ckUtnuSS1e/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM\t%POS\t%INFO\t%FORMAT\n' -s D,C
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %GT %AD %PBINOM(AD)\n]' -i'phred(binom(FMT/AD))>=0' /tmp/ckUtnuSS1e/query.pbinom.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.pbinom.1.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %GT %AD %PBINOM(AD)\n]' -i'phred(binom(FMT/AD))>=0'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\n' -i'POS==16777217 || POS==33554432 || POS=118673904' /tmp/ckUtnuSS1e/query.filter.6.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter.6.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\n' -i'POS==16777217 || POS==33554432 || POS=118673904'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%II[\t%FI]\n' -i'sum(II)==6' /tmp/ckUtnuSS1e/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%II[\t%FI]\n' -i'sum(II)==6'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%II[\t%FI]\n' -i'sum(FORMAT/FI)==7' /tmp/ckUtnuSS1e/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%II[\t%FI]\n' -i'sum(FORMAT/FI)==7'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%II[\t%FI]\n' -i'avg(II)==2' /tmp/ckUtnuSS1e/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%II[\t%FI]\n' -i'avg(II)==2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%II[\t%FI]\n' -i'avg(FORMAT/FI)==1.75' /tmp/ckUtnuSS1e/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%II[\t%FI]\n' -i'avg(FORMAT/FI)==1.75'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%II[\t%FI]\n' -i'mean(II)==2' /tmp/ckUtnuSS1e/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%II[\t%FI]\n' -i'mean(II)==2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%II[\t%FI]\n' -i'mean(FORMAT/FI)==1.75' /tmp/ckUtnuSS1e/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%II[\t%FI]\n' -i'mean(FORMAT/FI)==1.75'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%II[\t%FI]\n' -i'median(II)==2' /tmp/ckUtnuSS1e/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%II[\t%FI]\n' -i'median(II)==2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%II[\t%FI]\n' -i'median(FORMAT/FI)==1.5' /tmp/ckUtnuSS1e/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%II[\t%FI]\n' -i'median(FORMAT/FI)==1.5'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%ILEN\n' -i'%ILEN==1' /tmp/ckUtnuSS1e/query.filter.8.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter.8.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%ILEN\n' -i'%ILEN==1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%ILEN\n' -i'ILEN==1' /tmp/ckUtnuSS1e/query.filter.8.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter.8.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%ILEN\n' -i'ILEN==1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS  %SAMPLE  %AD\n]' -i'FMT/AD[:0] < FMT/AD[:1]' /tmp/ckUtnuSS1e/query.filter.9.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter.9.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS  %SAMPLE  %AD\n]' -i'FMT/AD[:0] < FMT/AD[:1]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS  %SAMPLE  %AD\n]' -i'FMT/AD[:0] > FMT/AD[:1]' /tmp/ckUtnuSS1e/query.filter.9.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter.9.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS  %SAMPLE  %AD\n]' -i'FMT/AD[:0] > FMT/AD[:1]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[ %AD\n]' -i'AD[:1] / sum(AD[*]) > 0.5' /tmp/ckUtnuSS1e/query.filter.13.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter.13.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[ %AD\n]' -i'AD[:1] / sum(AD[*]) > 0.5'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS  %NUM_TAG\n' -i'COUNT(INFO/NUM_TAG)=2' /tmp/ckUtnuSS1e/query.filter.10.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter.10.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS  %NUM_TAG\n' -i'COUNT(INFO/NUM_TAG)=2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS  %STR_TAG\n' -i'COUNT(INFO/STR_TAG)=2' /tmp/ckUtnuSS1e/query.filter.10.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter.10.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS  %STR_TAG\n' -i'COUNT(INFO/STR_TAG)=2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS\t%N_PASS(GT="alt" & GQ>110)\t[\t%GT]\t[\t%GQ]\n' /tmp/ckUtnuSS1e/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS\t%N_PASS(GT="alt" & GQ>110)\t[\t%GT]\t[\t%GQ]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS[\t%SAMPLE=%GT]\n' -e 'GT="mis"' -s 1,3,0 /tmp/ckUtnuSS1e/query.filter.12.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter.12.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS[\t%SAMPLE=%GT]\n' -e 'GT="mis"' -s 1,3,0
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS[\t%SAMPLE=%GT]\n' -e 'GT="mis"' -s 0,1,3 /tmp/ckUtnuSS1e/query.filter.12.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter.12.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS[\t%SAMPLE=%GT]\n' -e 'GT="mis"' -s 0,1,3
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f "[%SAMPLE %GT\n]" -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.smpl.11.txt /tmp/ckUtnuSS1e/query.smpl.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.smpl.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f "[%SAMPLE %GT\n]" -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.smpl.11.txt
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -l -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.smpl.11.txt /tmp/ckUtnuSS1e/query.smpl.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.smpl.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -l -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.smpl.11.txt
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f "[%SAMPLE %GT\n]" -S ^/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.smpl.11.txt /tmp/ckUtnuSS1e/query.smpl.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.smpl.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f "[%SAMPLE %GT\n]" -S ^/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.smpl.11.txt
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -l -S ^/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.smpl.11.txt /tmp/ckUtnuSS1e/query.smpl.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.smpl.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -l -S ^/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.smpl.11.txt
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f "[%SAMPLE %GT\n]" -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.smpl.txt /tmp/ckUtnuSS1e/query.smpl.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.smpl.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f "[%SAMPLE %GT\n]" -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.smpl.txt
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -l -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.smpl.txt /tmp/ckUtnuSS1e/query.smpl.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.smpl.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -l -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.smpl.txt
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%ID\n' -i'ID~"s12"' /tmp/ckUtnuSS1e/query.filter.id.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter.id.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%ID\n' -i'ID~"s12"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%ID\n' -i'ID="rs123"' /tmp/ckUtnuSS1e/query.filter.id.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter.id.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%ID\n' -i'ID="rs123"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%ID\n' -i'ID="abc"' /tmp/ckUtnuSS1e/query.filter.id.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter.id.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%ID\n' -i'ID="abc"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%ID\n' -i'ID=@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.filter.id.3.txt' /tmp/ckUtnuSS1e/query.filter.id.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter.id.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%ID\n' -i'ID=@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.filter.id.3.txt'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%ID\n' -i'ID!="abc"' /tmp/ckUtnuSS1e/query.filter.id.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter.id.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%ID\n' -i'ID!="abc"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%ID\n' -i'ID!=@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.filter.id.3.txt' /tmp/ckUtnuSS1e/query.filter.id.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter.id.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%ID\n' -i'ID!=@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.filter.id.3.txt'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER="A"' -f'%FILTER\n' /tmp/ckUtnuSS1e/filter.12.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/filter.12.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER="A"' -f'%FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER~"A"' -f'%FILTER\n' /tmp/ckUtnuSS1e/filter.12.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/filter.12.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER~"A"' -f'%FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER="A;B"' -f'%FILTER\n' /tmp/ckUtnuSS1e/filter.12.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/filter.12.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER="A;B"' -f'%FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER!="A;B"' -f'%FILTER\n' /tmp/ckUtnuSS1e/filter.12.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/filter.12.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER!="A;B"' -f'%FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER~"A;B"' -f'%FILTER\n' /tmp/ckUtnuSS1e/filter.12.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/filter.12.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER~"A;B"' -f'%FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER!~"A;B"' -f'%FILTER\n' /tmp/ckUtnuSS1e/filter.12.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/filter.12.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER!~"A;B"' -f'%FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'DP%10==2' -f'[ %DP]\n' /tmp/ckUtnuSS1e/filter.10.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/filter.10.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'DP%10==2' -f'[ %DP]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'REF="N"' -f'%CHROM %POS %REF %ALT %QUAL\n' /tmp/ckUtnuSS1e/filter.13.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/filter.13.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'REF="N"' -f'%CHROM %POS %REF %ALT %QUAL\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -H -f'[%CHROM %POS  %SAMPLE %DP %GT\n]' /tmp/ckUtnuSS1e/query.header.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.header.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -H -f'[%CHROM %POS  %SAMPLE %DP %GT\n]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -H -f'[%CHROM %POS  %SAMPLE %DP %GT\t]\n' /tmp/ckUtnuSS1e/query.header.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.header.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -H -f'[%CHROM %POS  %SAMPLE %DP %GT\t]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -H -f'%CHROM %POS[ %SAMPLE %DP %GT]\n' /tmp/ckUtnuSS1e/query.header.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.header.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -H -f'%CHROM %POS[ %SAMPLE %DP %GT]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -H -f'%CHROM %POS[ %SAMPLE %DP %GT]' /tmp/ckUtnuSS1e/query.header.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.header.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -H -f'%CHROM %POS[ %SAMPLE %DP %GT]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -H -f'%CHROM %POS[ %SAMPLE][ %DP][ %GT]\n' /tmp/ckUtnuSS1e/query.header.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.header.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -H -f'%CHROM %POS[ %SAMPLE][ %DP][ %GT]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -H -f'%CHROM %POS[ %SAMPLE][ %DP][ %GT]' /tmp/ckUtnuSS1e/query.header.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.header.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -H -f'%CHROM %POS[ %SAMPLE][ %DP][ %GT]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -HH -f'%CHROM %POS[ %SAMPLE][ %DP][ %GT]' /tmp/ckUtnuSS1e/query.header.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.header.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -HH -f'%CHROM %POS[ %SAMPLE][ %DP][ %GT]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%SAMPLE %DP\n]' -i'DP=1 || DP=2' /tmp/ckUtnuSS1e/query.filter-or.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter-or.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%SAMPLE %DP\n]' -i'DP=1 || DP=2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%SAMPLE %DP\n]' -i'DP=1 |  DP=2' /tmp/ckUtnuSS1e/query.filter-or.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/query.filter-or.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%SAMPLE %DP\n]' -i'DP=1 |  DP=2'
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s /tmp/ckUtnuSS1e/norm.dup-end.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.dup-end.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s /tmp/ckUtnuSS1e/norm.dup-end.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.dup-end.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s -N10 /tmp/ckUtnuSS1e/norm.dup-end.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.dup-end.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s -N10 /tmp/ckUtnuSS1e/norm.dup-end.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.dup-end.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s -N /tmp/ckUtnuSS1e/norm.dup-end.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.dup-end.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s -N /tmp/ckUtnuSS1e/norm.dup-end.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.dup-end.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s -N0 /tmp/ckUtnuSS1e/norm.dup-end.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.dup-end.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s -N0 /tmp/ckUtnuSS1e/norm.dup-end.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.dup-end.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s -N3 /tmp/ckUtnuSS1e/norm.dup-end.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.dup-end.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s -N3 /tmp/ckUtnuSS1e/norm.dup-end.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.dup-end.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s -e 'type~"other"' /tmp/ckUtnuSS1e/norm.dup-end.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.dup-end.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s -e 'type~"other"' /tmp/ckUtnuSS1e/norm.dup-end.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.dup-end.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s /tmp/ckUtnuSS1e/norm.check-ref.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.check-ref.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s /tmp/ckUtnuSS1e/norm.check-ref.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.check-ref.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +both -i 'ID=@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.filter.txt' /tmp/ckUtnuSS1e/norm.filter.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +both -i 'ID=@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.filter.txt' /tmp/ckUtnuSS1e/norm.filter.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +both -i 'ALT!="C"' /tmp/ckUtnuSS1e/norm.filter.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +both -i 'ALT!="C"' /tmp/ckUtnuSS1e/norm.filter.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d both -i 'ID=@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.filter.txt' /tmp/ckUtnuSS1e/norm.filter.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d both -i 'ID=@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.filter.txt' /tmp/ckUtnuSS1e/norm.filter.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d both -i 'ALT!="C"' /tmp/ckUtnuSS1e/norm.filter.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d both -i 'ALT!="C"' /tmp/ckUtnuSS1e/norm.filter.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c e /tmp/ckUtnuSS1e/norm.6.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.2.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c e /tmp/ckUtnuSS1e/norm.6.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.2.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - /tmp/ckUtnuSS1e/norm.breakend.1.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.breakend.1.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - /tmp/ckUtnuSS1e/norm.breakend.1.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.breakend.1.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - /tmp/ckUtnuSS1e/norm.sort.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - /tmp/ckUtnuSS1e/norm.sort.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - -S lex /tmp/ckUtnuSS1e/norm.sort.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - -S lex /tmp/ckUtnuSS1e/norm.sort.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +both /tmp/ckUtnuSS1e/norm.join-missing-ploidy.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +both /tmp/ckUtnuSS1e/norm.join-missing-ploidy.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - --multi-overlaps . /tmp/ckUtnuSS1e/norm.split.5.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - --multi-overlaps . /tmp/ckUtnuSS1e/norm.split.5.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version  /tmp/ckUtnuSS1e/norm.symbolic.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.symbolic.3.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version  /tmp/ckUtnuSS1e/norm.symbolic.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.symbolic.3.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -cx /tmp/ckUtnuSS1e/norm.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -cx /tmp/ckUtnuSS1e/norm.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m- /tmp/ckUtnuSS1e/norm.split.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m- /tmp/ckUtnuSS1e/norm.split.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m- -a /tmp/ckUtnuSS1e/norm.split.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m- -a /tmp/ckUtnuSS1e/norm.split.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m- /tmp/ckUtnuSS1e/norm.split.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m- /tmp/ckUtnuSS1e/norm.split.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m- --force /tmp/ckUtnuSS1e/norm.split.3.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m- --force /tmp/ckUtnuSS1e/norm.split.3.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m- /tmp/ckUtnuSS1e/norm.split.4.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m- /tmp/ckUtnuSS1e/norm.split.4.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m- --keep-sum AD /tmp/ckUtnuSS1e/norm.split.4.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m- --keep-sum AD /tmp/ckUtnuSS1e/norm.split.4.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m- /tmp/ckUtnuSS1e/norm.split.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m- /tmp/ckUtnuSS1e/norm.split.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m+ /tmp/ckUtnuSS1e/norm.merge.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m+ /tmp/ckUtnuSS1e/norm.merge.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m+ /tmp/ckUtnuSS1e/norm.merge.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m+ /tmp/ckUtnuSS1e/norm.merge.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m+ /tmp/ckUtnuSS1e/norm.merge.3.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m+ /tmp/ckUtnuSS1e/norm.merge.3.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m+ -s /tmp/ckUtnuSS1e/norm.merge.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m+ -s /tmp/ckUtnuSS1e/norm.merge.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -N -c s /tmp/ckUtnuSS1e/norm.setref.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -N -c s /tmp/ckUtnuSS1e/norm.setref.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version /tmp/ckUtnuSS1e/norm.telomere.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version /tmp/ckUtnuSS1e/norm.telomere.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d snps /tmp/ckUtnuSS1e/norm.rmdup.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d snps /tmp/ckUtnuSS1e/norm.rmdup.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d indels /tmp/ckUtnuSS1e/norm.rmdup.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d indels /tmp/ckUtnuSS1e/norm.rmdup.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d both /tmp/ckUtnuSS1e/norm.rmdup.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d both /tmp/ckUtnuSS1e/norm.rmdup.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d all /tmp/ckUtnuSS1e/norm.rmdup.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d all /tmp/ckUtnuSS1e/norm.rmdup.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d none /tmp/ckUtnuSS1e/norm.rmdup.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d none /tmp/ckUtnuSS1e/norm.rmdup.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d exact /tmp/ckUtnuSS1e/norm.rmdup.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d exact /tmp/ckUtnuSS1e/norm.rmdup.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d none /tmp/ckUtnuSS1e/norm.rmdup.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d none /tmp/ckUtnuSS1e/norm.rmdup.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d exact /tmp/ckUtnuSS1e/norm.rmdup.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d exact /tmp/ckUtnuSS1e/norm.rmdup.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d indels /tmp/ckUtnuSS1e/norm.rmdup.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d indels /tmp/ckUtnuSS1e/norm.rmdup.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d any /tmp/ckUtnuSS1e/norm.rmdup.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d any /tmp/ckUtnuSS1e/norm.rmdup.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d both /tmp/ckUtnuSS1e/norm.rmdup.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d both /tmp/ckUtnuSS1e/norm.rmdup.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d snps /tmp/ckUtnuSS1e/norm.rmdup.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d snps /tmp/ckUtnuSS1e/norm.rmdup.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d exact /tmp/ckUtnuSS1e/norm.rmdup.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.rmdup.3.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d exact /tmp/ckUtnuSS1e/norm.rmdup.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.rmdup.3.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d all /tmp/ckUtnuSS1e/norm.rmdup.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.rmdup.3.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d all /tmp/ckUtnuSS1e/norm.rmdup.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.rmdup.3.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s -a --old-rec-tag XX /tmp/ckUtnuSS1e/norm.2.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.2.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s -a --old-rec-tag XX /tmp/ckUtnuSS1e/norm.2.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.2.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s --old-rec-tag XX /tmp/ckUtnuSS1e/norm.iupac.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.iupac.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s --old-rec-tag XX /tmp/ckUtnuSS1e/norm.iupac.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.iupac.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s --old-rec-tag XX /tmp/ckUtnuSS1e/norm.iupac.2.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.iupac.2.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s --old-rec-tag XX /tmp/ckUtnuSS1e/norm.iupac.2.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.iupac.2.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s --old-rec-tag XX /tmp/ckUtnuSS1e/norm.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.3.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s --old-rec-tag XX /tmp/ckUtnuSS1e/norm.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.3.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s -i'alt="N"' --old-rec-tag XX /tmp/ckUtnuSS1e/norm.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.3.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s -i'alt="N"' --old-rec-tag XX /tmp/ckUtnuSS1e/norm.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.3.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -a --old-rec-tag OLD_REC /tmp/ckUtnuSS1e/atomize.split.1.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m -any --force
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -a --old-rec-tag OLD_REC /tmp/ckUtnuSS1e/atomize.split.1.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m -any --force -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m -any --old-rec-tag OLD_REC --force /tmp/ckUtnuSS1e/atomize.split.1.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -a
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m -any --old-rec-tag OLD_REC --force /tmp/ckUtnuSS1e/atomize.split.1.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -a -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m -any --old-rec-tag OLD_REC --force -a /tmp/ckUtnuSS1e/atomize.split.1.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m -any --old-rec-tag OLD_REC --force -a /tmp/ckUtnuSS1e/atomize.split.1.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --atomize --atom-overlaps . --old-rec-tag OLD_REC /tmp/ckUtnuSS1e/atomize.split.1.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --atomize --atom-overlaps . --old-rec-tag OLD_REC /tmp/ckUtnuSS1e/atomize.split.1.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --atomize --old-rec-tag OLD_REC /tmp/ckUtnuSS1e/atomize.split.1.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --atomize --old-rec-tag OLD_REC /tmp/ckUtnuSS1e/atomize.split.1.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --atomize --old-rec-tag OLD_REC /tmp/ckUtnuSS1e/atomize.split.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --atomize --old-rec-tag OLD_REC /tmp/ckUtnuSS1e/atomize.split.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --atomize --atom-overlaps . --old-rec-tag OLD_REC /tmp/ckUtnuSS1e/atomize.split.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --atomize --atom-overlaps . --old-rec-tag OLD_REC /tmp/ckUtnuSS1e/atomize.split.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --atomize --atom-overlaps . /tmp/ckUtnuSS1e/atomize.split.3.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --atomize --atom-overlaps . /tmp/ckUtnuSS1e/atomize.split.3.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --atomize --atom-overlaps . --old-rec-tag OLD_REC /tmp/ckUtnuSS1e/atomize.split.4.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --atomize --atom-overlaps . --old-rec-tag OLD_REC /tmp/ckUtnuSS1e/atomize.split.4.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --atomize --atom-overlaps . --old-rec-tag OLD_REC -i 'ILEN=0' /tmp/ckUtnuSS1e/atomize.split.4.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --atomize --atom-overlaps . --old-rec-tag OLD_REC -i 'ILEN=0' /tmp/ckUtnuSS1e/atomize.split.4.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --atomize --old-rec-tag OLD_REC --atom-overlaps . /tmp/ckUtnuSS1e/atomize.split.5.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --atomize --old-rec-tag OLD_REC --atom-overlaps . /tmp/ckUtnuSS1e/atomize.split.5.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --atomize --old-rec-tag OLD_REC /tmp/ckUtnuSS1e/atomize.split.5.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --atomize --old-rec-tag OLD_REC /tmp/ckUtnuSS1e/atomize.split.5.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +both /tmp/ckUtnuSS1e/norm.4.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +both /tmp/ckUtnuSS1e/norm.4.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +any /tmp/ckUtnuSS1e/norm.4.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +any /tmp/ckUtnuSS1e/norm.4.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - --multi-overlaps 0 /tmp/ckUtnuSS1e/norm.5.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - --multi-overlaps 0 /tmp/ckUtnuSS1e/norm.5.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - --multi-overlaps . /tmp/ckUtnuSS1e/norm.5.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - --multi-overlaps . /tmp/ckUtnuSS1e/norm.5.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m -any /tmp/ckUtnuSS1e/norm.m-any.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m -any /tmp/ckUtnuSS1e/norm.m-any.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m -any /tmp/ckUtnuSS1e/norm.phased-split.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m -any /tmp/ckUtnuSS1e/norm.phased-split.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +any /tmp/ckUtnuSS1e/norm.phased-join.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +any /tmp/ckUtnuSS1e/norm.phased-join.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --old-rec-tag ORI /tmp/ckUtnuSS1e/norm.symbolic.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.symbolic.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --old-rec-tag ORI /tmp/ckUtnuSS1e/norm.symbolic.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.symbolic.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --old-rec-tag ORI /tmp/ckUtnuSS1e/norm.symbolic.2.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.symbolic.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --old-rec-tag ORI /tmp/ckUtnuSS1e/norm.symbolic.2.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.symbolic.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --old-rec-tag ORI /tmp/ckUtnuSS1e/norm.right-align.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.right-align.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --old-rec-tag ORI /tmp/ckUtnuSS1e/norm.right-align.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.right-align.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --old-rec-tag ORI -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.right-align.gff /tmp/ckUtnuSS1e/norm.right-align.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.right-align.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --old-rec-tag ORI -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.right-align.gff /tmp/ckUtnuSS1e/norm.right-align.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.right-align.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --old-rec-tag ORI -a -m -any /tmp/ckUtnuSS1e/norm.atom-split-norm.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.atom-split-norm.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --old-rec-tag ORI -a -m -any /tmp/ckUtnuSS1e/norm.atom-split-norm.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.atom-split-norm.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m -any /tmp/ckUtnuSS1e/norm.string-tags.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m -any /tmp/ckUtnuSS1e/norm.string-tags.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - /tmp/ckUtnuSS1e/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +both
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - /tmp/ckUtnuSS1e/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +both -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - /tmp/ckUtnuSS1e/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +indels
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - /tmp/ckUtnuSS1e/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +indels -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - /tmp/ckUtnuSS1e/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +snps
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - /tmp/ckUtnuSS1e/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +snps -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - /tmp/ckUtnuSS1e/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +snps
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - /tmp/ckUtnuSS1e/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +snps -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - /tmp/ckUtnuSS1e/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +any
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - /tmp/ckUtnuSS1e/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +any -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - -i 'type="snp"' /tmp/ckUtnuSS1e/norm.split.merge.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - -i 'type="snp"' /tmp/ckUtnuSS1e/norm.split.merge.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +any /tmp/ckUtnuSS1e/norm.merge.4.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +any /tmp/ckUtnuSS1e/norm.merge.4.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +both /tmp/ckUtnuSS1e/norm.merge.4.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +both /tmp/ckUtnuSS1e/norm.merge.4.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -Hv ref /tmp/ckUtnuSS1e/view.types.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -Hv snps /tmp/ckUtnuSS1e/view.types.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -Hv mnps /tmp/ckUtnuSS1e/view.types.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -Hv indels /tmp/ckUtnuSS1e/view.types.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -Hv other /tmp/ckUtnuSS1e/view.types.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -Hv bnd /tmp/ckUtnuSS1e/view.types.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -Hv overlap /tmp/ckUtnuSS1e/view.types.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -Hi 'MAC>=2' /tmp/ckUtnuSS1e/filter.mac.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -Hi 'MAF>=0.09' /tmp/ckUtnuSS1e/filter.mac.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -Hi 'MAF*AN>=2' /tmp/ckUtnuSS1e/filter.mac.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -i 'INFO/TAG=@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.string.1.txt' /tmp/ckUtnuSS1e/filter.string.1.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -i 'INFO/TAG=@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.string.1.txt' /tmp/ckUtnuSS1e/filter.string.1.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -i 'FMT/TAG=@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.string.1.txt' /tmp/ckUtnuSS1e/filter.string.1.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -i 'FMT/TAG=@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.string.1.txt' /tmp/ckUtnuSS1e/filter.string.1.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -HA /tmp/ckUtnuSS1e/merge.gvcf.2.a.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -HAA /tmp/ckUtnuSS1e/merge.gvcf.2.a.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version  /tmp/ckUtnuSS1e/weird-chr-names.vcf.gz -r 1
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob  /tmp/ckUtnuSS1e/weird-chr-names.vcf.gz -r 1 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version  /tmp/ckUtnuSS1e/weird-chr-names.vcf.gz -r 1:1-2
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob  /tmp/ckUtnuSS1e/weird-chr-names.vcf.gz -r 1:1-2 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version  /tmp/ckUtnuSS1e/weird-chr-names.vcf.gz -r 1:1,1:2
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob  /tmp/ckUtnuSS1e/weird-chr-names.vcf.gz -r 1:1,1:2 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version  /tmp/ckUtnuSS1e/weird-chr-names.vcf.gz -r 1:1-1
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob  /tmp/ckUtnuSS1e/weird-chr-names.vcf.gz -r 1:1-1 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version  /tmp/ckUtnuSS1e/weird-chr-names.vcf.gz -r {1:1}
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob  /tmp/ckUtnuSS1e/weird-chr-names.vcf.gz -r {1:1} | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version  /tmp/ckUtnuSS1e/weird-chr-names.vcf.gz -r {1:1}:1-2
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob  /tmp/ckUtnuSS1e/weird-chr-names.vcf.gz -r {1:1}:1-2 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version  /tmp/ckUtnuSS1e/weird-chr-names.vcf.gz -r {1:1}:1,{1:1}:2
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob  /tmp/ckUtnuSS1e/weird-chr-names.vcf.gz -r {1:1}:1,{1:1}:2 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version  /tmp/ckUtnuSS1e/weird-chr-names.vcf.gz -r {1:1}:1-1
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob  /tmp/ckUtnuSS1e/weird-chr-names.vcf.gz -r {1:1}:1-1 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version  /tmp/ckUtnuSS1e/weird-chr-names.vcf.gz -r {1:1-1}
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob  /tmp/ckUtnuSS1e/weird-chr-names.vcf.gz -r {1:1-1} | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version  /tmp/ckUtnuSS1e/weird-chr-names.vcf.gz -r {1:1-1}:1-2
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob  /tmp/ckUtnuSS1e/weird-chr-names.vcf.gz -r {1:1-1}:1-2 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version  /tmp/ckUtnuSS1e/weird-chr-names.vcf.gz -r {1:1-1}:1,{1:1-1}:2
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob  /tmp/ckUtnuSS1e/weird-chr-names.vcf.gz -r {1:1-1}:1,{1:1-1}:2 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version  /tmp/ckUtnuSS1e/weird-chr-names.vcf.gz -r {1:1-1}:1-1
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob  /tmp/ckUtnuSS1e/weird-chr-names.vcf.gz -r {1:1-1}:1-1 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version  /tmp/ckUtnuSS1e/weird-chr-names.vcf.gz -r {1:1-1}-2
.. ok, expected non-zero status

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob  /tmp/ckUtnuSS1e/weird-chr-names.vcf.gz -r {1:1-1}-2 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok, expected non-zero status

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -aUc1 -C1 -s NA00002 -v snps /tmp/ckUtnuSS1e/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -aUc1 -C1 -s NA00002 -v snps /tmp/ckUtnuSS1e/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -f PASS -Xks NA00003 /tmp/ckUtnuSS1e/view.vcf.gz -r20,Y
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -f PASS -Xks NA00003 /tmp/ckUtnuSS1e/view.vcf.gz -r20,Y | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -xs NA00003 /tmp/ckUtnuSS1e/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -xs NA00003 /tmp/ckUtnuSS1e/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -i 'QUAL==999 && (FS<20 || FS>=41.02) && ICF>-0.1 && HWE*2>1.2' /tmp/ckUtnuSS1e/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -i 'QUAL==999 && (FS<20 || FS>=41.02) && ICF>-0.1 && HWE*2>1.2' /tmp/ckUtnuSS1e/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -p /tmp/ckUtnuSS1e/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -p /tmp/ckUtnuSS1e/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -P /tmp/ckUtnuSS1e/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -P /tmp/ckUtnuSS1e/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -hm2 -M2 -q0.3 -Q0.7 /tmp/ckUtnuSS1e/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -hm2 -M2 -q0.3 -Q0.7 /tmp/ckUtnuSS1e/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -Hu /tmp/ckUtnuSS1e/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -GVsnps /tmp/ckUtnuSS1e/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -GVsnps /tmp/ckUtnuSS1e/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -ne 'INDEL=1 || PV4[0]<0.006' /tmp/ckUtnuSS1e/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -ne 'INDEL=1 || PV4[0]<0.006' /tmp/ckUtnuSS1e/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -s ^NA00003 /tmp/ckUtnuSS1e/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -s ^NA00003 /tmp/ckUtnuSS1e/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version  /tmp/ckUtnuSS1e/view.omitgenotypes.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob  /tmp/ckUtnuSS1e/view.omitgenotypes.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -G /tmp/ckUtnuSS1e/view.omitgenotypes.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -G /tmp/ckUtnuSS1e/view.omitgenotypes.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -HG /tmp/ckUtnuSS1e/view.omitgenotypes.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -a /tmp/ckUtnuSS1e/many.alleles.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -a /tmp/ckUtnuSS1e/many.alleles.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -asA /tmp/ckUtnuSS1e/view.vectors.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -asA /tmp/ckUtnuSS1e/view.vectors.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -asB /tmp/ckUtnuSS1e/view.vectors.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -asB /tmp/ckUtnuSS1e/view.vectors.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -asA /tmp/ckUtnuSS1e/view.vectors.2.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -asA /tmp/ckUtnuSS1e/view.vectors.2.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -i'FMT/FGS[*:0]="AAAAAA"' /tmp/ckUtnuSS1e/view.filter.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -i'FMT/FGS[*:2]="C"' /tmp/ckUtnuSS1e/view.filter.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -i'FMT/FGS[*:4]="EE"' /tmp/ckUtnuSS1e/view.filter.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -i'FMT/FRS[*:1]="BB"' /tmp/ckUtnuSS1e/view.filter.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -i'TXT0="text"' /tmp/ckUtnuSS1e/view.filter.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -T /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.chrs.tab /tmp/ckUtnuSS1e/view.chrs.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -T /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.chrs.tab /tmp/ckUtnuSS1e/view.chrs.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -i 'POS>=3062917' /tmp/ckUtnuSS1e/filter.2.vcf.gz 1:3062917-3157410
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -i 'POS>=3062917' /tmp/ckUtnuSS1e/filter.2.vcf.gz 1:3062917-3157410 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -r 1:10,1:12,1:10 /tmp/ckUtnuSS1e/idx.1.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -r 1:1172777-1172804,1:1172806-1172808 /tmp/ckUtnuSS1e/idx.2.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -R /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/idx.2.bed /tmp/ckUtnuSS1e/idx.2.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -R /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/idx.3.bed /tmp/ckUtnuSS1e/idx.3.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -R /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/idx.4.bed /tmp/ckUtnuSS1e/idx.4.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -Ht 2 /tmp/ckUtnuSS1e/view-t.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -Ht 3 /tmp/ckUtnuSS1e/view-t.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -r chr1:100-200 --regions-overlap 0 /tmp/ckUtnuSS1e/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -r chr1:100-200 --regions-overlap 1 /tmp/ckUtnuSS1e/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -r chr1:100-200 --regions-overlap 2 /tmp/ckUtnuSS1e/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -t chr1:100-200 --targets-overlap 0 /tmp/ckUtnuSS1e/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -t chr1:100-200 --targets-overlap 1 /tmp/ckUtnuSS1e/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -t chr1:100-200 --targets-overlap 2 /tmp/ckUtnuSS1e/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -t ^chr1:100-200 --targets-overlap 0 /tmp/ckUtnuSS1e/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -t ^chr1:100-200 --targets-overlap 1 /tmp/ckUtnuSS1e/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -t ^chr1:100-200 --targets-overlap 2 /tmp/ckUtnuSS1e/overlap.vcf.gz 
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view64bit.1.vcf -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view64bit.1.vcf     | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view64bit.1.vcf -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view64bit.2.vcf -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view64bit.2.vcf     | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view64bit.2.vcf -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view64bit.3.vcf -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view64bit.3.vcf     | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view64bit.4.vcf -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view64bit.4.vcf     | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view64bit.4.vcf -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view64bit.5.vcf -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view64bit.5.vcf     | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view64bit.5.vcf -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -C5:nonmajor /tmp/ckUtnuSS1e/view.minmaxac.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -c6:nonmajor /tmp/ckUtnuSS1e/view.minmaxac.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -q0.3:major /tmp/ckUtnuSS1e/view.minmaxac.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -i 'Gene.refGene=="RAD21L1"' /tmp/ckUtnuSS1e/view.filter.annovar.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -i 'Gene.refGene~"NOD"' /tmp/ckUtnuSS1e/view.filter.annovar.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -i 'LJB2_MutationTaster=="0.291000"' /tmp/ckUtnuSS1e/view.filter.annovar.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -a /tmp/ckUtnuSS1e/view-a.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -T /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.sites.txt /tmp/ckUtnuSS1e/view.sites.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -T /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.sites.txt /tmp/ckUtnuSS1e/view.sites.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -T /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.sites.txt.gz /tmp/ckUtnuSS1e/view.sites.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -T /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.sites.txt.gz /tmp/ckUtnuSS1e/view.sites.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools head /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools head -h 0 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools head -h 1 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools head -h 5 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools head -h 22 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools head -h 23 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools head -n 0 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools head -n 1 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools head -n 5 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools head -h 5 -n 5 < /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.2.vcf
.. ok

test_vcf_head2:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools head -s0 /tmp/ckUtnuSS1e/mpileup.2.vcf.gz
.. ok

test_vcf_head2:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -Ob /tmp/ckUtnuSS1e/mpileup.2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools head -s0
.. ok

test_vcf_head2:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools head -s1 /tmp/ckUtnuSS1e/mpileup.2.vcf.gz
.. ok

test_vcf_head2:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -Ob /tmp/ckUtnuSS1e/mpileup.2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools head -s1
.. ok

test_vcf_head2:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools head -s2 -h2 /tmp/ckUtnuSS1e/mpileup.2.vcf.gz
.. ok

test_vcf_head2:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -Ob /tmp/ckUtnuSS1e/mpileup.2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools head -s2 -h2
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -m -s sample1 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/samples.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -m -s sample1 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/samples.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -m -s ^sample2,sample3 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/samples.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -m -s ^sample2,sample3 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/samples.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -m -s sample3 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/samples.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -m -s sample3 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/samples.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -m -s ^sample1,sample2 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/samples.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -m -s ^sample1,sample2 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/samples.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -m --ploidy-file /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call-ploidy.1.txt -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call-ploidy.1.ped /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call-ploidy.1.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -m --ploidy-file /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call-ploidy.1.txt -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call-ploidy.1.ped /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call-ploidy.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mv /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mv /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mg0 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mg0 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mv -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.3.samples /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mv -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.3.samples /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mv -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.4.samples /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mv -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.4.samples /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mv -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.5.samples /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mv -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.5.samples /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mv --ploidy-file /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.samples /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.X.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mv --ploidy-file /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.samples /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.X.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mv --ploidy-file /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.ped /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.X.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mv --ploidy-file /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.ped /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.X.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mv --ploidy-file /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.2.samples /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.X.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mv --ploidy-file /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.2.samples /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.X.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mv /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.NA19213.NA19129.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mv /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.NA19213.NA19129.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mv -G - --group-samples-tag AD /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.NA19213.NA19129.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mv -G - --group-samples-tag AD /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.NA19213.NA19129.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mv /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.hwe.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mv /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.hwe.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mv -G - --group-samples-tag AD /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.hwe.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mv -G - --group-samples-tag AD /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.hwe.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mv -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.hwe.samples --group-samples-tag AD /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.hwe.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mv -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.hwe.samples --group-samples-tag AD /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.hwe.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mA -C alleles -T /tmp/ckUtnuSS1e/mpileup.tab.gz  /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mA -C alleles -T /tmp/ckUtnuSS1e/mpileup.tab.gz  /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mA -C alleles -T /tmp/ckUtnuSS1e/mpileup.2.tab.gz  /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.2.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mA -C alleles -T /tmp/ckUtnuSS1e/mpileup.2.tab.gz  /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mA -C alleles -T /tmp/ckUtnuSS1e/mpileup.3.tab.gz -i /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.3.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mA -C alleles -T /tmp/ckUtnuSS1e/mpileup.3.tab.gz -i /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mA -C alleles -T /tmp/ckUtnuSS1e/mpileup.4.tab.gz -i /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.3.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mA -C alleles -T /tmp/ckUtnuSS1e/mpileup.4.tab.gz -i /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mA -C alleles -T /tmp/ckUtnuSS1e/mpileup.5.tab.gz -i /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.3.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mA -C alleles -T /tmp/ckUtnuSS1e/mpileup.5.tab.gz -i /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mA -C alleles -T /tmp/ckUtnuSS1e/mpileup.6.tab.gz -i /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.4.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mA -C alleles -T /tmp/ckUtnuSS1e/mpileup.6.tab.gz -i /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.4.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mA -C alleles -T /tmp/ckUtnuSS1e/mpileup.7.tab.gz -i /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.5.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mA -C alleles -T /tmp/ckUtnuSS1e/mpileup.7.tab.gz -i /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.5.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mA -C alleles -T /tmp/ckUtnuSS1e/mpileup.cals.1.tab.gz  /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.cals.1.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mA -C alleles -T /tmp/ckUtnuSS1e/mpileup.cals.1.tab.gz  /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.cals.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mA -C alleles -T /tmp/ckUtnuSS1e/mpileup.cals.2.tab.gz  /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.cals.2.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mA -C alleles -T /tmp/ckUtnuSS1e/mpileup.cals.2.tab.gz  /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.cals.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -cv /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.c.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -cv /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.c.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -cv --ploidy-file /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.samples /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.c.X.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -cv --ploidy-file /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.samples /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.c.X.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -cv --ploidy-file /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.ped /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.c.X.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -cv --ploidy-file /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.ped /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.c.X.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -cv --ploidy-file /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.2.samples /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.c.X.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -cv --ploidy-file /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.2.samples /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.c.X.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mv /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call-G.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mv /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call-G.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mv -G - --group-samples-tag AD /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call-G.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mv -G - --group-samples-tag AD /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call-G.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mv -F AN_POP,AC_POP /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call-G.2.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mv -F AN_POP,AC_POP /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call-G.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -m /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call.af-fixation.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -m /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call.af-fixation.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -m -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call.af-fixation.txt /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call.af-fixation.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -m -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call.af-fixation.txt /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call.af-fixation.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -m -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call.af-fixation.txt -a GP,GQ /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call.af-fixation.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -m -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call.af-fixation.txt -a GP,GQ /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call.af-fixation.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S. -e'TXT0="text"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.filter.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S. -e'TXT0="text"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.filter.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S. -e'FMT/FRS[*:1]="BB"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.filter.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S. -e'FMT/FRS[*:1]="BB"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.filter.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S. -e'FMT/FGS[*:0]="AAAAAA"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.filter.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S. -e'FMT/FGS[*:0]="AAAAAA"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.filter.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S. -e'FMT/FGS[*:1]="BBB"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.filter.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S. -e'FMT/FGS[*:1]="BBB"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.filter.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S. -e'FMT/FGS[*:4]="EE"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.filter.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S. -e'FMT/FGS[*:4]="EE"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.filter.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S. -e'FMT/STR="XX"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.filter.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S. -e'FMT/STR="XX"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.filter.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S. -e'FMT/FILTER="aaa"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.filter.2.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S. -e'FMT/FILTER="aaa"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -mx -g2 -G2 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.1.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -mx -g2 -G2 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -e'QUAL==59.2 || (INDEL=0 & (FMT/GQ=25 | FMT/DP=10))' -sModified -S. /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -e'QUAL==59.2 || (INDEL=0 & (FMT/GQ=25 | FMT/DP=10))' -sModified -S. /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -e'INFO/DP=19' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -e'INFO/DP=19' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -e'INFO/DP=19' -s XX /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -e'INFO/DP=19' -s XX /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -e'INFO/DP=19' -s XX -m+ /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -e'INFO/DP=19' -s XX -m+ /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -e'INFO/DP=19' -s XX -mx /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -e'INFO/DP=19' -s XX -mx /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -e'INFO/DP=19' -s XX -m+x /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -e'INFO/DP=19' -s XX -m+x /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -e'FMT/GT="0/2"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -e'FMT/GT="0/2"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -e'FMT/GT="0/2"' -s XX /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -e'FMT/GT="0/2"' -s XX /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -e'FMT/GT="0/2"' -s XX -m+ /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -e'FMT/GT="0/2"' -s XX -m+ /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -e'FMT/GT="0/2"' -s XX -mx /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -e'FMT/GT="0/2"' -s XX -mx /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -e'FMT/GT="0/2"' -s XX -m+x /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -e'FMT/GT="0/2"' -s XX -m+x /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'FMT/GT="0/0" && AC[*]=2' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%AC[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'FMT/GT="0/0" && AC[*]=2' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%AC[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'AC[*]=2 && FMT/GT="0/0"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%AC[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'AC[*]=2 && FMT/GT="0/0"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%AC[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'ALT="."' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%AC[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'ALT="."' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%AC[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -i 'FORMAT/TEST3<25' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.4.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -i 'FORMAT/TEST3<25' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.4.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -i 'FORMAT/TEST4<25' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.4.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -i 'FORMAT/TEST4<25' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.4.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'GT="A"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'GT="A"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'GT="RR"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'GT="RR"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'GT="RA"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'GT="RA"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'GT="AR"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'GT="AR"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'GT="AA"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'GT="AA"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'GT="aA"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'GT="aA"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'GT="Aa"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'GT="Aa"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'GT="HOM"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'GT="HOM"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'GT="HET"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'GT="HET"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'GT="HAP"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'GT="HAP"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'AD[:1]=11' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'AD[:1]=11' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'AD[1:]=11' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'AD[1:]=11' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'FR[0:1]=11' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%FR]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'FR[0:1]=11' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%FR]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'AD[*]="."' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'AD[*]="."' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'AD[0:0]=="."' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'AD[0:0]=="."' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'AD[0:0]!="."' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'AD[0:0]!="."' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'QUAL=="."' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%QUAL\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'QUAL=="."' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%QUAL\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'N_PASS(DP>32)=1' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '[%POS\t%SAMPLE\t%DP\n]'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'N_PASS(DP>32)=1' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '[%POS\t%SAMPLE\t%DP\n]'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'F_PASS(DP>32)=0.5' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '[%POS\t%SAMPLE\t%DP\n]'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'F_PASS(DP>32)=0.5' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '[%POS\t%SAMPLE\t%DP\n]'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'F_MISSING>=1/5' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'F_MISSING>=1/5' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'F_MISSING>=0.2' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'F_MISSING>=0.2' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'F_PASS(GT=="mis")>=1/5' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'F_PASS(GT=="mis")>=1/5' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'F_PASS(GT=="mis")>=0.2' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'F_PASS(GT=="mis")>=0.2' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -mx -s + -g2:mnp,indel,other /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.7.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -mx -s + -g2:mnp,indel,other /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.7.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'FORMAT/AO==4' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'FORMAT/AO==4' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'MAX(FORMAT/AO[0:])==4' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'MAX(FORMAT/AO[0:])==4' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'MAX(FORMAT/AO)==4' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'MAX(FORMAT/AO)==4' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'MIN(FORMAT/AO[0:])==3' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'MIN(FORMAT/AO[0:])==3' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'MIN(FORMAT/AO)==2' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'MIN(FORMAT/AO)==2' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'MIN(FORMAT/AO[0:])==3' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'MIN(FORMAT/AO[0:])==3' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'AVG(FORMAT/AO[2:])==4' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'AVG(FORMAT/AO[2:])==4' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'MEDIAN(FORMAT/AO[2:])==4' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'MEDIAN(FORMAT/AO[2:])==4' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'STDEV(FORMAT/AO[0:])=0.5' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'STDEV(FORMAT/AO[0:])=0.5' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'SUM(FORMAT/AO[0:])=7' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'SUM(FORMAT/AO[0:])=7' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'SMPL_MAX(FORMAT/AO)==4' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'SMPL_MAX(FORMAT/AO)==4' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'sMIN(FORMAT/AO)==2' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'sMIN(FORMAT/AO)==2' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'ABS(sAVG(FORMAT/AO)-3.66666)<1e-5' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'ABS(sAVG(FORMAT/AO)-3.66666)<1e-5' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'sMEDIAN(FORMAT/AO)==4' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'sMEDIAN(FORMAT/AO)==4' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'ABS(sSTDEV(FORMAT/AO)-1.2472191)<1e-5' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'ABS(sSTDEV(FORMAT/AO)-1.2472191)<1e-5' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'sSUM(FORMAT/AO)==11' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'sSUM(FORMAT/AO)==11' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i 'QUAL/FMT/AD==55' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.9.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i 'QUAL/FMT/AD==55' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.9.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i 'QUAL/INFO/AD==10' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.9.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i 'QUAL/INFO/AD==10' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.9.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'ABS(SMPL_MAX(FORMAT/AO))=5' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'ABS(SMPL_MAX(FORMAT/AO))=5' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'PHRED(AO[1:])>-4' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'PHRED(AO[1:])>-4' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'ABS(AO[1:])==2' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'ABS(AO[1:])==2' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i 'sum(AD[*]) > FORMAT/DP' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.10.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i 'sum(AD[*]) > FORMAT/DP' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.10.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i 'FORMAT/DP < sum(AD[*])' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.10.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i 'FORMAT/DP < sum(AD[*])' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.10.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i 'sum(AD[*]) < FORMAT/DP' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.10.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i 'sum(AD[*]) < FORMAT/DP' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.10.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i 'FORMAT/DP > sum(AD[*])' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.10.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i 'FORMAT/DP > sum(AD[*])' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.10.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter --soft-filter xxx --mask 2:1005-1008 --mask-overlap 0 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.1.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob --soft-filter xxx --mask 2:1005-1008 --mask-overlap 0 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter --soft-filter xxx --mask 2:1005-1008 --mask-overlap 1 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.1.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob --soft-filter xxx --mask 2:1005-1008 --mask-overlap 1 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter --soft-filter xxx --mask 2:1005-1008 --mask-overlap 2 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.1.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob --soft-filter xxx --mask 2:1005-1008 --mask-overlap 2 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter --soft-filter xxx --mask ^2:1005-1008 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.1.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob --soft-filter xxx --mask ^2:1005-1008 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_sort:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools sort -m 0 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/sort.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM\t%POS\t%REF,%ALT\n'
.. ok

test_vcf_sort:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools sort -Ob -m 0 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/sort.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM\t%POS\t%REF,%ALT\n'
.. ok

test_vcf_sort:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools sort -m 1000 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/sort.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM\t%POS\t%REF,%ALT\n'
.. ok

test_vcf_sort:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools sort -Ob -m 1000 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/sort.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM\t%POS\t%REF,%ALT\n'
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/regions.tab /tmp/ckUtnuSS1e/regions.vcf.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/regions.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/regions.tab
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM %POS %REF,%ALT\n' -R /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/regions.tab /tmp/ckUtnuSS1e/regions.vcf.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/ckUtnuSS1e/regions.tab.gz /tmp/ckUtnuSS1e/regions.vcf.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/regions.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/ckUtnuSS1e/regions.tab.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM %POS %REF,%ALT\n' -R /tmp/ckUtnuSS1e/regions.tab.gz /tmp/ckUtnuSS1e/regions.vcf.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/ckUtnuSS1e/regions.bed /tmp/ckUtnuSS1e/regions.vcf.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/regions.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/ckUtnuSS1e/regions.bed
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM %POS %REF,%ALT\n' -R /tmp/ckUtnuSS1e/regions.bed /tmp/ckUtnuSS1e/regions.vcf.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/ckUtnuSS1e/regions.bed.gz /tmp/ckUtnuSS1e/regions.vcf.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/regions.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/ckUtnuSS1e/regions.bed.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM %POS %REF,%ALT\n' -R /tmp/ckUtnuSS1e/regions.bed.gz /tmp/ckUtnuSS1e/regions.vcf.gz
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annotate.pipes.tab.gz  -c CHROM,POS,REF,ALT,SRC,FF,II /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.pipes.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annotate.pipes.tab.gz  -c CHROM,POS,REF,ALT,SRC,FF,II /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.pipes.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annotate.pipes.tab.gz  -c CHROM,POS,REF,ALT,SRC,FF,II -k -i 'SRC={SRC}' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.pipes.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annotate.pipes.tab.gz  -c CHROM,POS,REF,ALT,SRC,FF,II -k -i 'SRC={SRC}' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.pipes.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annotate.AR.tab.gz  -c CHROM,POS,REF,ALT,+INFO/IA,+INFO/FA,+INFO/IR,+INFO/FR /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.AR.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annotate.AR.tab.gz  -c CHROM,POS,REF,ALT,+INFO/IA,+INFO/FA,+INFO/IR,+INFO/FR /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.AR.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annotate.AR.tab.gz  -c CHROM,POS,REF,ALT,INFO/IA,INFO/FA,INFO/IR,INFO/FR /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.AR.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annotate.AR.tab.gz  -c CHROM,POS,REF,ALT,INFO/IA,INFO/FA,INFO/IR,INFO/FR /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.AR.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annotate.int.src.vcf.gz  -c +INFO/IA,+INFO/IR /tmp/ckUtnuSS1e/annotate.int.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annotate.int.src.vcf.gz  -c +INFO/IA,+INFO/IR /tmp/ckUtnuSS1e/annotate.int.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate   -c INFO/ii:=INFO/XX /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.rename.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob   -c INFO/ii:=INFO/XX /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.rename.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate   -c FORMAT/ff:=FORMAT/XX /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.rename.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob   -c FORMAT/ff:=FORMAT/XX /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.rename.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annots36.bed.gz  -c CHROM,POS,-,~X,-,AF,-,-,- -i'SVTYPE={X}' -k /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate36.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annots36.bed.gz  -c CHROM,POS,-,~X,-,AF,-,-,- -i'SVTYPE={X}' -k /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate36.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annots36.bed.gz  -c CHROM,BEG,END,~X,-,AF,-,-,- -i'SVTYPE={X}' -k /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate36.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annots36.bed.gz  -c CHROM,BEG,END,~X,-,AF,-,-,- -i'SVTYPE={X}' -k /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate36.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annots35.vcf.gz  -c CHROM,POS,~ID,REF,ALT,INFO/src /tmp/ckUtnuSS1e/annotate35.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annots35.vcf.gz  -c CHROM,POS,~ID,REF,ALT,INFO/src /tmp/ckUtnuSS1e/annotate35.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annotate.escape.1.tab.gz  -c CHROM,POS,ISTR,FMT/FSTR /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.escape.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annotate.escape.1.tab.gz  -c CHROM,POS,ISTR,FMT/FSTR /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.escape.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annotate.match.1.tab.gz  -c CHROM,POS,-,-,SCORE,~X,-,- -i'STR={X}' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.match.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annotate.match.1.tab.gz  -c CHROM,POS,-,-,SCORE,~X,-,- -i'STR={X}' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.match.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annotate.match.1.tab.gz  -c CHROM,POS,REF,ALT,SCORE,-,~X,- -i'INT={X}' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.match.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annotate.match.1.tab.gz  -c CHROM,POS,REF,ALT,SCORE,-,~X,- -i'INT={X}' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.match.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annotate.match.1.tab.gz  -c CHROM,POS,REF,ALT,SCORE,-,-,~X -i'FLT={X}' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.match.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annotate.match.1.tab.gz  -c CHROM,POS,REF,ALT,SCORE,-,-,~X -i'FLT={X}' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.match.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annotate.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.hdr -c CHROM,POS,REF,ALT,ID,QUAL,INFO/T_INT,INFO/T_FLOAT,INDEL /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annotate.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.hdr -c CHROM,POS,REF,ALT,ID,QUAL,INFO/T_INT,INFO/T_FLOAT,INDEL /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annotate2.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.hdr -c CHROM,POS,-,T_STR /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annotate2.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.hdr -c CHROM,POS,-,T_STR /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annotate2.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.hdr -c CHROM,FROM,TO,T_STR /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annotate2.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.hdr -c CHROM,FROM,TO,T_STR /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annots.vcf.gz  -c STR,ID,QUAL,FILTER /tmp/ckUtnuSS1e/annotate.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annots.vcf.gz  -c STR,ID,QUAL,FILTER /tmp/ckUtnuSS1e/annotate.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annots2.vcf.gz  -c ID,QUAL,FILTER,INFO,FMT /tmp/ckUtnuSS1e/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annots2.vcf.gz  -c ID,QUAL,FILTER,INFO,FMT /tmp/ckUtnuSS1e/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s A /tmp/ckUtnuSS1e/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s A /tmp/ckUtnuSS1e/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s "A B" /tmp/ckUtnuSS1e/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s "A B" /tmp/ckUtnuSS1e/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s "A C" /tmp/ckUtnuSS1e/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s "A C" /tmp/ckUtnuSS1e/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s "B C" /tmp/ckUtnuSS1e/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s "B C" /tmp/ckUtnuSS1e/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate   -x ID,QUAL,^FILTER/fltA,FILTER/fltB,^INFO/AA,INFO/BB,^FMT/GT,FMT/PL /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob   -x ID,QUAL,^FILTER/fltA,FILTER/fltB,^INFO/AA,INFO/BB,^FMT/GT,FMT/PL /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate   -x FORMAT /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob   -x FORMAT /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annots4.vcf.gz  -c +INFO /tmp/ckUtnuSS1e/annotate4.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annots4.vcf.gz  -c +INFO /tmp/ckUtnuSS1e/annotate4.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annots4.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate4.hdr -c CHROM,POS,REF,ALT,+FA,+FR,+IA,+IR,+SA,+SR /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate4.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annots4.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate4.hdr -c CHROM,POS,REF,ALT,+FA,+FR,+IA,+IR,+SA,+SR /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate4.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annots10.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate10.hdr -c CHROM,POS,FMT/FINT,FMT/FFLT,FMT/FSTR /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate10.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annots10.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate10.hdr -c CHROM,POS,FMT/FINT,FMT/FFLT,FMT/FSTR /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate10.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annots2.vcf.gz  -c CHROM,POS,FMT/FINT,FMT/FFLT,FMT/FSTR -s A /tmp/ckUtnuSS1e/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annots2.vcf.gz  -c CHROM,POS,FMT/FINT,FMT/FFLT,FMT/FSTR -s A /tmp/ckUtnuSS1e/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annots11.tab.gz  -c CHROM,POS,FMT/FINT,FMT/FFLT,FMT/FSTR -s A /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annots11.tab.gz  -c CHROM,POS,FMT/FINT,FMT/FFLT,FMT/FSTR -s A /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annots2.vcf.gz  -c AAA:=IINT,FMT/BBB:=FMT/FINT /tmp/ckUtnuSS1e/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annots2.vcf.gz  -c AAA:=IINT,FMT/BBB:=FMT/FINT /tmp/ckUtnuSS1e/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annots2.vcf.gz  -x INFO -c INFO/IINT /tmp/ckUtnuSS1e/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annots2.vcf.gz  -x INFO -c INFO/IINT /tmp/ckUtnuSS1e/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annots2.vcf.gz  -x INFO -c INFO/IINT -e'POS=3000001' -k /tmp/ckUtnuSS1e/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annots2.vcf.gz  -x INFO -c INFO/IINT -e'POS=3000001' -k /tmp/ckUtnuSS1e/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annots11.vcf.gz  -c FMT /tmp/ckUtnuSS1e/annotate11.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annots11.vcf.gz  -c FMT /tmp/ckUtnuSS1e/annotate11.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annots2.vcf.gz  -c FMT/newGT:=GT /tmp/ckUtnuSS1e/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annots2.vcf.gz  -c FMT/newGT:=GT /tmp/ckUtnuSS1e/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annots12.vcf.gz  -c FMT/GT:=newGT /tmp/ckUtnuSS1e/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annots12.vcf.gz  -c FMT/GT:=newGT /tmp/ckUtnuSS1e/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annots13.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate13.hdr -c CHROM,BEG,END,ABC /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate13.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annots13.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate13.hdr -c CHROM,BEG,END,ABC /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate13.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annots13.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate13.hdr -c CHROM,BEG,END,ABC -l ABC:append /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate13.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annots13.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate13.hdr -c CHROM,BEG,END,ABC -l ABC:append /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate13.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annots13.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate13.hdr -c CHROM,BEG,END,ABC -l ABC:unique /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate13.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annots13.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate13.hdr -c CHROM,BEG,END,ABC -l ABC:unique /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate13.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate   -x FILTER/XX,INFO/XX --force /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate14.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob   -x FILTER/XX,INFO/XX --force /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate14.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annotate15.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate15.hdr -s SAMPLE1 -c CHROM,FROM,TO,FMT/FOO,BAR /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate15.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annotate15.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate15.hdr -s SAMPLE1 -c CHROM,FROM,TO,FMT/FOO,BAR /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate15.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annotate15.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate15.hdr -s SAMPLE2 -c CHROM,FROM,TO,FMT/FOO,BAR /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate15.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annotate15.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate15.hdr -s SAMPLE2 -c CHROM,FROM,TO,FMT/FOO,BAR /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate15.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annotate15.tab.gz  -s SAMPLE2 -c CHROM,FROM,TO,FMT/FOO,BAR -H '##FORMAT=<ID=FOO,Number=1,Type=String,Description="Some description">' -H '##INFO=<ID=BAR,Number=1,Type=Integer,Description="Some description">' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate15.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annotate15.tab.gz  -s SAMPLE2 -c CHROM,FROM,TO,FMT/FOO,BAR -H '##FORMAT=<ID=FOO,Number=1,Type=String,Description="Some description">' -H '##INFO=<ID=BAR,Number=1,Type=Integer,Description="Some description">' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate15.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate   -x FILTER /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate16.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob   -x FILTER /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate16.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annotate17.1.tab.gz  -c CHROM,BEG,END,A,B -l A:append,B:append /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate17.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annotate17.1.tab.gz  -c CHROM,BEG,END,A,B -l A:append,B:append /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate17.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annotate17.1.tab.gz  -c CHROM,BEG,END,A,B -l A:append,B:append /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate17.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annotate17.1.tab.gz  -c CHROM,BEG,END,A,B -l A:append,B:append /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate17.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annotate17.3.tab.gz  -c CHROM,BEG,END,A,B -l A:append,B:append /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate17.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annotate17.3.tab.gz  -c CHROM,BEG,END,A,B -l A:append,B:append /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate17.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annotate18.1.tab.gz  -c CHROM,BEG,END,A,B,C,D,E -l A:sum,B:avg,C:min,D:max,E:append /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate18.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annotate18.1.tab.gz  -c CHROM,BEG,END,A,B,C,D,E -l A:sum,B:avg,C:min,D:max,E:append /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate18.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annotate18.2.tab.gz  -c CHROM,BEG,END,A,B,C,D,E -l A:sum,B:avg,C:min,D:max,E:append /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate18.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annotate18.2.tab.gz  -c CHROM,BEG,END,A,B,C,D,E -l A:sum,B:avg,C:min,D:max,E:append /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate18.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annotate19.src.vcf.gz  -c INFO/ID:=ID,INFO/INFO_ID:=INFO/ID,ID,=ID:=INFO/ID /tmp/ckUtnuSS1e/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annotate19.src.vcf.gz  -c INFO/ID:=ID,INFO/INFO_ID:=INFO/ID,ID,=ID:=INFO/ID /tmp/ckUtnuSS1e/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annotate19.src.vcf.gz  -c FILTER,INFO/FILTER:=FILTER,INFO/INFO_FILTER:=INFO/FILTER /tmp/ckUtnuSS1e/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annotate19.src.vcf.gz  -c FILTER,INFO/FILTER:=FILTER,INFO/INFO_FILTER:=INFO/FILTER /tmp/ckUtnuSS1e/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annotate19.src.vcf.gz  -c INFO/FILTER:=FILTER,INFO/INFO_FILTER:=INFO/FILTER /tmp/ckUtnuSS1e/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annotate19.src.vcf.gz  -c INFO/FILTER:=FILTER,INFO/INFO_FILTER:=INFO/FILTER /tmp/ckUtnuSS1e/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate   -c INFO/FILTER:=FILTER /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate19.dst.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob   -c INFO/FILTER:=FILTER /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate19.dst.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annotate19.src.vcf.gz  -c INFO/FILTER:=FILTER /tmp/ckUtnuSS1e/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annotate19.src.vcf.gz  -c INFO/FILTER:=FILTER /tmp/ckUtnuSS1e/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annotate19.src.vcf.gz  -c INFO/FILTER:=./FILTER /tmp/ckUtnuSS1e/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annotate19.src.vcf.gz  -c INFO/FILTER:=./FILTER /tmp/ckUtnuSS1e/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annotate19.src.vcf.gz  -c INFO/FILTER:=./FILTER,FILTER /tmp/ckUtnuSS1e/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annotate19.src.vcf.gz  -c INFO/FILTER:=./FILTER,FILTER /tmp/ckUtnuSS1e/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annotate19.src.vcf.gz  -c FILTER,INFO/FILTER:=./FILTER /tmp/ckUtnuSS1e/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annotate19.src.vcf.gz  -c FILTER,INFO/FILTER:=./FILTER /tmp/ckUtnuSS1e/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annotate20.src.vcf.gz  -c  FMT/GT /tmp/ckUtnuSS1e/annotate20.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annotate20.src.vcf.gz  -c  FMT/GT /tmp/ckUtnuSS1e/annotate20.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annotate20.src.vcf.gz  -c +FMT/GT /tmp/ckUtnuSS1e/annotate20.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annotate20.src.vcf.gz  -c +FMT/GT /tmp/ckUtnuSS1e/annotate20.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annotate20.src.vcf.gz  -c -FMT/GT /tmp/ckUtnuSS1e/annotate20.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annotate20.src.vcf.gz  -c -FMT/GT /tmp/ckUtnuSS1e/annotate20.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annotate.multi.tab.gz  -c CHROM,POS,REF,ALT,ANN -l ANN:append /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.multi.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annotate.multi.tab.gz  -c CHROM,POS,REF,ALT,ANN -l ANN:append /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.multi.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annotate.missing-append.tab.gz  -c CHROM,POS,REF,ALT,STR,INT,FLT -l STR:append-missing,INT:append-missing,FLT:append-missing /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.missing-append.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annotate.missing-append.tab.gz  -c CHROM,POS,REF,ALT,STR,INT,FLT -l STR:append-missing,INT:append-missing,FLT:append-missing /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.missing-append.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annots9.tab.gz  -c CHROM,POS,REF,ALT,+ID /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate9.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annots9.tab.gz  -c CHROM,POS,REF,ALT,+ID /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate9.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate   --rename-annots /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate21.txt /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate21.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob   --rename-annots /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate21.txt /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate21.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate   -c XX:=FORMAT/X-X,YY:=FORMAT/Y-Y,AA:=FORMAT/A-A,AA:=INFO/A-A,BB:=INFO/B-B,XX:=INFO/X-X,YY:=INFO/Y-Y,fltA:=FILTER/flt-A,fltB:=FILTER/flt-B,fltX:=FILTER/flt-X,fltY:=FILTER/flt-Y /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate21.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob   -c XX:=FORMAT/X-X,YY:=FORMAT/Y-Y,AA:=FORMAT/A-A,AA:=INFO/A-A,BB:=INFO/B-B,XX:=INFO/X-X,YY:=INFO/Y-Y,fltA:=FILTER/flt-A,fltB:=FILTER/flt-B,fltX:=FILTER/flt-X,fltY:=FILTER/flt-Y /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate21.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annotate22.vcf.gz  -c FMT/XX,INFO/XX -x FMT/XX,INFO/XX /tmp/ckUtnuSS1e/annotate22.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annotate22.vcf.gz  -c FMT/XX,INFO/XX -x FMT/XX,INFO/XX /tmp/ckUtnuSS1e/annotate22.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annotate23.tab.gz  -c CHROM,POS,~ID,REF,ALT,INFO/END /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate23.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annotate23.tab.gz  -c CHROM,POS,~ID,REF,ALT,INFO/END /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate23.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annotate24.src.vcf.gz  -c XX /tmp/ckUtnuSS1e/annotate24.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annotate24.src.vcf.gz  -c XX /tmp/ckUtnuSS1e/annotate24.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annotate25.tab.gz  -c CHROM,POS,ID,REF,ALT,~INFO/END /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate25.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annotate25.tab.gz  -c CHROM,POS,ID,REF,ALT,~INFO/END /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate25.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annotate26.tab.gz  -c CHROM,POS,-POS /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate26.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annotate26.tab.gz  -c CHROM,POS,-POS /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate26.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,TSTR,TFLT,TINT /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,TSTR,TFLT,TINT /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,.TSTR,.TFLT,.TINT /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,.TSTR,.TFLT,.TINT /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,.+TSTR,.+TFLT,.+TINT /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,.+TSTR,.+TFLT,.+TINT /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,+TSTR,+TFLT,+TINT /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,+TSTR,+TFLT,+TINT /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,.=TSTR,.=TFLT,.=TINT /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,.=TSTR,.=TFLT,.=TINT /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,=TSTR,=TFLT,=TINT /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,=TSTR,=TFLT,=TINT /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annots.olap.tab.gz  -c CHROM,BEG,END,DB -l DB:unique /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.olap.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annots.olap.tab.gz  -c CHROM,BEG,END,DB -l DB:unique /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.olap.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annots.olap.tab.gz  -c CHROM,BEG,END,DB -l DB:unique --min-overlap 0.4:0.5 -m XXX /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.olap.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annots.olap.tab.gz  -c CHROM,BEG,END,DB -l DB:unique --min-overlap 0.4:0.5 -m XXX /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.olap.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annots.id.vcf.gz  -c ALT /tmp/ckUtnuSS1e/annotate.id.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annots.id.vcf.gz  -c ALT /tmp/ckUtnuSS1e/annotate.id.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annots.id.vcf.gz  -c +ALT /tmp/ckUtnuSS1e/annotate.id.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annots.id.vcf.gz  -c +ALT /tmp/ckUtnuSS1e/annotate.id.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annots.id.2.vcf.gz  --pair-logic some -c +ID /tmp/ckUtnuSS1e/annotate.id.2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annots.id.2.vcf.gz  --pair-logic some -c +ID /tmp/ckUtnuSS1e/annotate.id.2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annots.id.2.vcf.gz  --pair-logic any -c +ID /tmp/ckUtnuSS1e/annotate.id.2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annots.id.2.vcf.gz  --pair-logic any -c +ID /tmp/ckUtnuSS1e/annotate.id.2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annotate27.tab.gz  -c CHROM,POS,REF,ALT,EVIDENCE /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate27.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annotate27.tab.gz  -c CHROM,POS,REF,ALT,EVIDENCE /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate27.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annots28.tab.gz  -c CHROM,POS,REF,ALT,FMT/TEST -s smpl1,smpl2 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate28.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annots28.tab.gz  -c CHROM,POS,REF,ALT,FMT/TEST -s smpl1,smpl2 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate28.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annots28.tab.gz  -c CHROM,POS,REF,ALT,FMT/TEST -s smpl2,smpl1 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate28.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annots28.tab.gz  -c CHROM,POS,REF,ALT,FMT/TEST -s smpl2,smpl1 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate28.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annots28.tab.gz  -c CHROM,POS,REF,ALT,FMT/TEST -s smpl1 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate28.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annots28.tab.gz  -c CHROM,POS,REF,ALT,FMT/TEST -s smpl1 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate28.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annots28.tab.gz  -c CHROM,POS,REF,ALT,FMT/TEST -s smpl2 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate28.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annots28.tab.gz  -c CHROM,POS,REF,ALT,FMT/TEST -s smpl2 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate28.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate   -m XXX /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob   -m XXX /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annots34.tab.gz  -c CHROM,FROM,TO,INFO/END -H '##INFO=<ID=END,Number=1,Type=Integer,Description="End coordinate in reference for SV">' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate34.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annots34.tab.gz  -c CHROM,FROM,TO,INFO/END -H '##INFO=<ID=END,Number=1,Type=Integer,Description="End coordinate in reference for SV">' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate34.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/ckUtnuSS1e/annots-mark.bed.gz  -c CHROM,FROM,TO -m TAG /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annots-mark.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/ckUtnuSS1e/annots-mark.bed.gz  -c CHROM,FROM,TO -m TAG /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annots-mark.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +check-ploidy --no-version /tmp/ckUtnuSS1e/checkploidy.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +check-ploidy --no-version /tmp/ckUtnuSS1e/checkploidy.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +check-ploidy --no-version /tmp/ckUtnuSS1e/checkploidy.2.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +check-ploidy --no-version /tmp/ckUtnuSS1e/checkploidy.2.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +check-ploidy --no-version /tmp/ckUtnuSS1e/checkploidy.2.vcf.gz -- -m | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +check-ploidy --no-version /tmp/ckUtnuSS1e/checkploidy.2.bcf -- -m | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +missing2ref --no-version /tmp/ckUtnuSS1e/plugin1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +missing2ref --no-version /tmp/ckUtnuSS1e/plugin1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/ckUtnuSS1e/plugin1.vcf.gz -- -t . -n 0 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/ckUtnuSS1e/plugin1.bcf -- -t . -n 0 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/ckUtnuSS1e/setGT.vcf.gz -- -t q -n 0 -i 'GT~"." && FMT/DP=30 && GQ=150' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/ckUtnuSS1e/setGT.bcf -- -t q -n 0 -i 'GT~"." && FMT/DP=30 && GQ=150' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/ckUtnuSS1e/setGT.2.vcf.gz -- -t q -n . -i 'GT[@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/setGT.samples.txt]="het"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/ckUtnuSS1e/setGT.2.bcf -- -t q -n . -i 'GT[@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/setGT.samples.txt]="het"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/ckUtnuSS1e/setGT.2.vcf.gz -- -t q -n . -i 'GT[@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/setGT.samples.txt]="het" & binom(AD[@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/setGT.samples.txt])<0.1' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/ckUtnuSS1e/setGT.2.bcf -- -t q -n . -i 'GT[@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/setGT.samples.txt]="het" & binom(AD[@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/setGT.samples.txt])<0.1' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/ckUtnuSS1e/setGT.2.vcf.gz -- -t a -n i | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/ckUtnuSS1e/setGT.2.bcf -- -t a -n i | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/ckUtnuSS1e/setGT.3.vcf.gz -- -t a -n pM | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/ckUtnuSS1e/setGT.3.bcf -- -t a -n pM | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/ckUtnuSS1e/setGT.3.vcf.gz -- -t a -n pm | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/ckUtnuSS1e/setGT.3.bcf -- -t a -n pm | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/ckUtnuSS1e/setGT.3.vcf.gz -- -t a -n c:1 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/ckUtnuSS1e/setGT.3.bcf -- -t a -n c:1 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/ckUtnuSS1e/setGT.3.vcf.gz -- -t a -n c:"1|1" | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/ckUtnuSS1e/setGT.3.bcf -- -t a -n c:"1|1" | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/ckUtnuSS1e/setGT.3.vcf.gz -- -t a -n c:"m|M" | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/ckUtnuSS1e/setGT.3.bcf -- -t a -n c:"m|M" | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/ckUtnuSS1e/setGT.3.vcf.gz -- -t a -n c:0/1/1 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/ckUtnuSS1e/setGT.3.bcf -- -t a -n c:0/1/1 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/ckUtnuSS1e/setGT.3.vcf.gz -i 'GT="mis"' -- -t . -nc:././. | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/ckUtnuSS1e/setGT.3.bcf -i 'GT="mis"' -- -t . -nc:././. | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/ckUtnuSS1e/setGT.4.vcf.gz -- -t q -n . -e 'FMT/DP>90' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/ckUtnuSS1e/setGT.4.bcf -- -t q -n . -e 'FMT/DP>90' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/ckUtnuSS1e/setGT.4.vcf.gz -- -t q -n . -e 'FMT/DP>100' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/ckUtnuSS1e/setGT.4.bcf -- -t q -n . -e 'FMT/DP>100' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/ckUtnuSS1e/setGT.5.vcf.gz -- -t a -n X | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] AD should be declared as Number=R
[W::bcf_hdr_check_sanity] AD should be declared as Number=R
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/ckUtnuSS1e/setGT.5.bcf -- -t a -n X | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/ckUtnuSS1e/setGT.5.vcf.gz -- -t a -n c:0/X/X | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] AD should be declared as Number=R
[W::bcf_hdr_check_sanity] AD should be declared as Number=R
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/ckUtnuSS1e/setGT.5.bcf -- -t a -n c:0/X/X | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/ckUtnuSS1e/setGT.6.vcf.gz -- -t ./x -n . | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/ckUtnuSS1e/setGT.6.bcf -- -t ./x -n . | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/ckUtnuSS1e/setGT.6.vcf.gz -- -t . -n . | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/ckUtnuSS1e/setGT.6.bcf -- -t . -n . | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/ckUtnuSS1e/setGT.6.vcf.gz -- -t r:0.5 -n . | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/ckUtnuSS1e/setGT.6.bcf -- -t r:0.5 -n . | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-AN-AC --no-version /tmp/ckUtnuSS1e/plugin1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-AN-AC --no-version /tmp/ckUtnuSS1e/plugin1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +dosage /tmp/ckUtnuSS1e/dosage.vcf.gz -- -t PL | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +dosage /tmp/ckUtnuSS1e/dosage.bcf -- -t PL | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +dosage /tmp/ckUtnuSS1e/dosage.vcf.gz -- -t GL | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +dosage /tmp/ckUtnuSS1e/dosage.bcf -- -t GL | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +dosage /tmp/ckUtnuSS1e/dosage.vcf.gz -- -t GT | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +dosage /tmp/ckUtnuSS1e/dosage.bcf -- -t GT | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fixploidy --no-version /tmp/ckUtnuSS1e/fixploidy.vcf.gz -- -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fixploidy.samples -p /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fixploidy.ploidy | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fixploidy --no-version /tmp/ckUtnuSS1e/fixploidy.bcf -- -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fixploidy.samples -p /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fixploidy.ploidy | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +guess-ploidy /tmp/ckUtnuSS1e/view.PL.vcf.gz -v -rX | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +guess-ploidy /tmp/ckUtnuSS1e/view.PL.bcf -v -rX | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +guess-ploidy /tmp/ckUtnuSS1e/view.GL.vcf.gz -v -rX | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +guess-ploidy /tmp/ckUtnuSS1e/view.GL.bcf -v -rX | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +tag2tag --no-version /tmp/ckUtnuSS1e/view.GL.vcf.gz -- -r --gl-to-pl | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +tag2tag --no-version /tmp/ckUtnuSS1e/view.GL.bcf -- -r --gl-to-pl | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +tag2tag --no-version /tmp/ckUtnuSS1e/view.GL.vcf.gz -- --gl-to-gp | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +tag2tag --no-version /tmp/ckUtnuSS1e/view.GL.bcf -- --gl-to-gp | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +tag2tag --no-version /tmp/ckUtnuSS1e/view.GP.vcf.gz -- -r --gp-to-gt -t 0.2 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +tag2tag --no-version /tmp/ckUtnuSS1e/view.GP.bcf -- -r --gp-to-gt -t 0.2 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +tag2tag --no-version /tmp/ckUtnuSS1e/tag2tag.LPL.1.vcf.gz -- --LXX-to-XX | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +tag2tag --no-version /tmp/ckUtnuSS1e/tag2tag.LPL.1.bcf -- --LXX-to-XX | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +tag2tag --no-version /tmp/ckUtnuSS1e/tag2tag.LPL.1.vcf.gz -- --LXX-to-XX -r | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +tag2tag --no-version /tmp/ckUtnuSS1e/tag2tag.LPL.1.bcf -- --LXX-to-XX -r | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +tag2tag --no-version /tmp/ckUtnuSS1e/tag2tag.LPL.1.vcf.gz -- --LXX-to-XX -r -d AD:0,PL:255 -s 3 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +tag2tag --no-version /tmp/ckUtnuSS1e/tag2tag.LPL.1.bcf -- --LXX-to-XX -r -d AD:0,PL:255 -s 3 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +add-variantkey /tmp/ckUtnuSS1e/query.variantkey.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +add-variantkey /tmp/ckUtnuSS1e/query.variantkey.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +variantkey-hex /tmp/ckUtnuSS1e/query.variantkey.vcf.gz test/ | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +variantkey-hex /tmp/ckUtnuSS1e/query.variantkey.bcf test/ | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +allele-length /tmp/ckUtnuSS1e/query.nucleotide.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +allele-length /tmp/ckUtnuSS1e/query.nucleotide.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/fill-tags.MAC-MAF.vcf.gz -- -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fill-tags.3.smpl -t 'MAC:1=MAC' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/fill-tags.MAC-MAF.bcf -- -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fill-tags.3.smpl -t 'MAC:1=MAC' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/fill-tags.MAC-MAF.vcf.gz -- -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fill-tags.3.smpl -t 'MAC:1=int(MAF*AN)' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/fill-tags.MAC-MAF.bcf -- -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fill-tags.3.smpl -t 'MAC:1=int(MAF*AN)' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/query.func.1.vcf.gz -- -t 'FMT/AB:1=float(FMT/AD[*:0] / ssum(FMT/AD[*]))' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/query.func.1.bcf -- -t 'FMT/AB:1=float(FMT/AD[*:0] / ssum(FMT/AD[*]))' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/fmissing.vcf.gz -- -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fmissing.txt -t 'F_MISSING' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/fmissing.bcf -- -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fmissing.txt -t 'F_MISSING' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/fmissing.vcf.gz -- -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fmissing.txt -t 'F_MISSING:1=F_PASS(GT="mis")' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/fmissing.bcf -- -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fmissing.txt -t 'F_MISSING:1=F_PASS(GT="mis")' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/fmissing.vcf.gz -- -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fmissing.txt -t 'N_MISSING:1=int(N_PASS(GT="mis"))' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/fmissing.bcf -- -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fmissing.txt -t 'N_MISSING:1=int(N_PASS(GT="mis"))' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/fisher.vcf.gz -- -t 'FT:1=phred(fisher(INFO/DP4))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/fisher.bcf -- -t 'FT:1=phred(fisher(INFO/DP4))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/fisher.vcf.gz -- -t 'FT:1=phred(fisher(INFO/ADF[0,2],INFO/ADR[0,2]))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/fisher.bcf -- -t 'FT:1=phred(fisher(INFO/ADF[0,2],INFO/ADR[0,2]))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/fisher.vcf.gz -- -t 'FT:1=phred(fisher(INFO/ADF,INFO/ADR))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/fisher.bcf -- -t 'FT:1=phred(fisher(INFO/ADF,INFO/ADR))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/fisher.vcf.gz -- -t 'FMT/FT:1=phred(fisher(FMT/DP4))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/fisher.bcf -- -t 'FMT/FT:1=phred(fisher(FMT/DP4))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/fisher.vcf.gz -- -t 'FMT/FT:1=phred(fisher(FORMAT/ADF,FORMAT/ADR))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/fisher.bcf -- -t 'FMT/FT:1=phred(fisher(FORMAT/ADF,FORMAT/ADR))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/fisher.vcf.gz -- -t 'FMT/FT:1=phred(fisher(FORMAT/ADF[:0,1],FORMAT/ADR[:0,1]))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/fisher.bcf -- -t 'FMT/FT:1=phred(fisher(FORMAT/ADF[:0,1],FORMAT/ADR[:0,1]))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/merge.a.vcf.gz -- -t AN,AC,AC_Hom,AC_Het,AC_Hemi | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/merge.a.bcf -- -t AN,AC,AC_Hom,AC_Het,AC_Hemi | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/view.vcf.gz -- -t AC,AN,AF,MAF,NS | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/view.bcf -- -t AC,AN,AF,MAF,NS | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/view.vcf.gz -- -t AC -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fill-tags.3.smpl | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/view.bcf -- -t AC -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fill-tags.3.smpl | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/view.vcf.gz -- -t "DP:1=int(sum(FORMAT/DP))" -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fill-tags.3.smpl | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/view.bcf -- -t "DP:1=int(sum(FORMAT/DP))" -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fill-tags.3.smpl | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/many-alts.vcf.gz -- -t AN,AC | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/many-alts.bcf -- -t AN,AC | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/fill-tags-hemi.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/fill-tags-hemi.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/fill-tags-hemi.vcf.gz -- -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/fill-tags-hemi.bcf -- -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/fill-tags-hwe.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/fill-tags-hwe.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/fill-tags-hwe.vcf.gz -- -t 'XX:1=F_PASS(GT="alt")' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/fill-tags-hwe.bcf -- -t 'XX:1=F_PASS(GT="alt")' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/fill-tags-rw.vcf.gz -- -t all,END,TYPE,F_MISSING | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/fill-tags-rw.bcf -- -t all,END,TYPE,F_MISSING | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/fill-tags-AN0.vcf.gz -- -t all,END,TYPE,F_MISSING | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/fill-tags-AN0.bcf -- -t all,END,TYPE,F_MISSING | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/fill-tags-VAF.vcf.gz -- -t VAF,VAF1 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/fill-tags-VAF.bcf -- -t VAF,VAF1 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/fill-tags-AD.vcf.gz -- -t 'INFO/DP:1=int(sum(FMT/AD))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/fill-tags-AD.bcf -- -t 'INFO/DP:1=int(sum(FMT/AD))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/fill-tags-AD.vcf.gz -- -t 'INFO/DP:1=int(sum(INFO/AD))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/fill-tags-AD.bcf -- -t 'INFO/DP:1=int(sum(INFO/AD))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/fill-tags-AD.vcf.gz -- -t 'FORMAT/DP:1=int(smpl_sum(FMT/AD))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/fill-tags-AD.bcf -- -t 'FORMAT/DP:1=int(smpl_sum(FMT/AD))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/fill-tags-AD.vcf.gz -- -t 'XX=N_PASS(FMT/AD[:0]<=10)','YY=N_PASS(FMT/AD[:0]>10)' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/fill-tags-AD.bcf -- -t 'XX=N_PASS(FMT/AD[:0]<=10)','YY=N_PASS(FMT/AD[:0]>10)' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/fill-tags-AD.vcf.gz -- -t 'good=N_PASS(binom(FMT/AD[:0],FMT/AD[:1])>=1e-5)','bad=N_PASS(binom(FMT/AD[:0],FMT/AD[:1])<1e-5)' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/ckUtnuSS1e/fill-tags-AD.bcf -- -t 'good=N_PASS(binom(FMT/AD[:0],FMT/AD[:1])>=1e-5)','bad=N_PASS(binom(FMT/AD[:0],FMT/AD[:1])<1e-5)' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTisec /tmp/ckUtnuSS1e/view.vcf.gz  | grep -v bcftools | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTisec /tmp/ckUtnuSS1e/view.bcf  | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTisec /tmp/ckUtnuSS1e/view.vcf.gz -- -H | grep -v bcftools | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTisec /tmp/ckUtnuSS1e/view.bcf -- -H | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTisec /tmp/ckUtnuSS1e/view.vcf.gz -- -Hm | grep -v bcftools | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTisec /tmp/ckUtnuSS1e/view.bcf -- -Hm | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTisec /tmp/ckUtnuSS1e/view.vcf.gz -- -Hmv | grep -v bcftools | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTisec /tmp/ckUtnuSS1e/view.bcf -- -Hmv | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTisec /tmp/ckUtnuSS1e/view.vcf.gz -- -Hv | grep -v bcftools | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTisec /tmp/ckUtnuSS1e/view.bcf -- -Hv | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTisec /tmp/ckUtnuSS1e/view.vcf.gz -- -m | grep -v bcftools | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTisec /tmp/ckUtnuSS1e/view.bcf -- -m | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTisec /tmp/ckUtnuSS1e/view.vcf.gz -- -mv | grep -v bcftools | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTisec /tmp/ckUtnuSS1e/view.bcf -- -mv | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTisec /tmp/ckUtnuSS1e/view.vcf.gz -- -v | grep -v bcftools | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTisec /tmp/ckUtnuSS1e/view.bcf -- -v | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-switch-rate /tmp/ckUtnuSS1e/trio.vcf.gz -- -p /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/trio.ped | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-switch-rate /tmp/ckUtnuSS1e/trio.bcf -- -p /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/trio.ped | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-stats /tmp/ckUtnuSS1e/trio-stats.vcf.gz -a 1 -p /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/trio-stats.ped -d mendel-errors,transmitted | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-stats /tmp/ckUtnuSS1e/trio-stats.bcf -a 1 -p /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/trio-stats.ped -d mendel-errors,transmitted | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-stats /tmp/ckUtnuSS1e/trio-stats.vcf.gz -p /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/trio-stats.ped -d mendel-errors,transmitted | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-stats /tmp/ckUtnuSS1e/trio-stats.bcf -p /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/trio-stats.ped -d mendel-errors,transmitted | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +smpl-stats /tmp/ckUtnuSS1e/indel-stats.vcf.gz | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +smpl-stats /tmp/ckUtnuSS1e/indel-stats.bcf | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +indel-stats /tmp/ckUtnuSS1e/indel-stats.vcf.gz | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +indel-stats /tmp/ckUtnuSS1e/indel-stats.bcf | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +indel-stats /tmp/ckUtnuSS1e/indel-stats.vcf.gz  -p /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/trio-stats.ped | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +indel-stats /tmp/ckUtnuSS1e/indel-stats.bcf  -p /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/trio-stats.ped | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +indel-stats /tmp/ckUtnuSS1e/indel-stats.vcf.gz  -p /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/trio-stats.2.ped | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +indel-stats /tmp/ckUtnuSS1e/indel-stats.bcf  -p /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/trio-stats.2.ped | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +ad-bias /tmp/ckUtnuSS1e/ad-bias.vcf.gz -- -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/ad-bias.samples | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +ad-bias /tmp/ckUtnuSS1e/ad-bias.bcf -- -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/ad-bias.samples | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +ad-bias /tmp/ckUtnuSS1e/ad-bias.2.vcf.gz -- -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/ad-bias.samples | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +ad-bias /tmp/ckUtnuSS1e/ad-bias.2.bcf -- -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/ad-bias.samples | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +ad-bias /tmp/ckUtnuSS1e/ad-bias.vcf.gz --no-version -- -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/ad-bias.samples -c | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +ad-bias /tmp/ckUtnuSS1e/ad-bias.bcf --no-version -- -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/ad-bias.samples -c | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +ad-bias /tmp/ckUtnuSS1e/ad-bias.2.vcf.gz --no-version -- -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/ad-bias.samples -c | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +ad-bias /tmp/ckUtnuSS1e/ad-bias.2.bcf --no-version -- -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/ad-bias.samples -c | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +af-dist /tmp/ckUtnuSS1e/af-dist.vcf.gz  | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +af-dist /tmp/ckUtnuSS1e/af-dist.bcf  | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fixref /tmp/ckUtnuSS1e/fixref.2a.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa -i /tmp/ckUtnuSS1e/fixref.2b.vcf.gz | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fixref /tmp/ckUtnuSS1e/fixref.2a.bcf -- -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa -i /tmp/ckUtnuSS1e/fixref.2b.vcf.gz | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fixref /tmp/ckUtnuSS1e/fixref.3.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fixref.3.fa -m top | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fixref /tmp/ckUtnuSS1e/fixref.3.bcf -- -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fixref.3.fa -m top | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fixref /tmp/ckUtnuSS1e/fixref.2a.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa -m ref-alt | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fixref /tmp/ckUtnuSS1e/fixref.2a.bcf -- -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa -m ref-alt | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fixref /tmp/ckUtnuSS1e/fixref.2a.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa -m flip | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fixref /tmp/ckUtnuSS1e/fixref.2a.bcf -- -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa -m flip | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fixref /tmp/ckUtnuSS1e/fixref.2a.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa -m flip-all | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fixref /tmp/ckUtnuSS1e/fixref.2a.bcf -- -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa -m flip-all | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fixref /tmp/ckUtnuSS1e/fixref.2a.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa -m swap | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fixref /tmp/ckUtnuSS1e/fixref.2a.bcf -- -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa -m swap | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-from-fasta /tmp/ckUtnuSS1e/aa.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/aa.fa -c AA -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/aa.hdr -i 'TYPE="snp"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-from-fasta /tmp/ckUtnuSS1e/aa.bcf -- -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/aa.fa -c AA -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/aa.hdr -i 'TYPE="snp"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-from-fasta /tmp/ckUtnuSS1e/aa.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/aa.fa -c REF -N | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-from-fasta /tmp/ckUtnuSS1e/aa.bcf -- -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/aa.fa -c REF -N | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-from-fasta /tmp/ckUtnuSS1e/ref.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa -c REF | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-from-fasta /tmp/ckUtnuSS1e/ref.bcf -- -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa -c REF | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTsubset --no-version /tmp/ckUtnuSS1e/view.vcf.gz -- -s NA00001 | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTsubset --no-version /tmp/ckUtnuSS1e/view.bcf -- -s NA00001 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTsubset --no-version /tmp/ckUtnuSS1e/view.vcf.gz -- -s NA00001,NA00002 | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTsubset --no-version /tmp/ckUtnuSS1e/view.bcf -- -s NA00001,NA00002 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTsubset --no-version /tmp/ckUtnuSS1e/view.vcf.gz -- -s NA00001,NA00002,NA00003 | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTsubset --no-version /tmp/ckUtnuSS1e/view.bcf -- -s NA00001,NA00002,NA00003 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +mendelian2 /tmp/ckUtnuSS1e/mendelian.vcf.gz -p 2X:child1,dad1,mom1 -md | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +mendelian2 /tmp/ckUtnuSS1e/mendelian.bcf -p 2X:child1,dad1,mom1 -md | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +mendelian2 /tmp/ckUtnuSS1e/mendelian.vcf.gz -P /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mendelian.ped -md | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +mendelian2 /tmp/ckUtnuSS1e/mendelian.bcf -P /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mendelian.ped -md | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +mendelian2 /tmp/ckUtnuSS1e/mendelian.vcf.gz -p 1X:child1,dad1,mom1 -mg | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +mendelian2 /tmp/ckUtnuSS1e/mendelian.bcf -p 1X:child1,dad1,mom1 -mg | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +mendelian2 /tmp/ckUtnuSS1e/mendelian.vcf.gz -p 1X:child1,dad1,mom1 -me | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +mendelian2 /tmp/ckUtnuSS1e/mendelian.bcf -p 1X:child1,dad1,mom1 -me | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +mendelian2 /tmp/ckUtnuSS1e/mendelian.vcf.gz -p 1X:child1,dad1,mom1 -ma | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +mendelian2 /tmp/ckUtnuSS1e/mendelian.bcf -p 1X:child1,dad1,mom1 -ma | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +mendelian2 /tmp/ckUtnuSS1e/mendelian.vcf.gz -p 1X:child1,dad1,mom1 -mm | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +mendelian2 /tmp/ckUtnuSS1e/mendelian.bcf -p 1X:child1,dad1,mom1 -mm | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +mendelian2 /tmp/ckUtnuSS1e/mendelian.vcf.gz -p 1X:child1,dad1,mom1 | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +mendelian2 /tmp/ckUtnuSS1e/mendelian.bcf -p 1X:child1,dad1,mom1 | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +mendelian2 /tmp/ckUtnuSS1e/mendelian.vcf.gz -p 2X:child1,dad1,mom1 | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +mendelian2 /tmp/ckUtnuSS1e/mendelian.bcf -p 2X:child1,dad1,mom1 | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +contrast /tmp/ckUtnuSS1e/contrast.vcf.gz -a PASSOC,FASSOC,NOVELAL,NOVELGT -0 a,b -1 c | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +contrast /tmp/ckUtnuSS1e/contrast.bcf -a PASSOC,FASSOC,NOVELAL,NOVELGT -0 a,b -1 c | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +contrast /tmp/ckUtnuSS1e/contrast.vcf.gz -a PASSOC,FASSOC,NOVELAL,NOVELGT -0 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/contrast0.txt -1 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/contrast1.txt | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +contrast /tmp/ckUtnuSS1e/contrast.bcf -a PASSOC,FASSOC,NOVELAL,NOVELGT -0 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/contrast0.txt -1 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/contrast1.txt | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +contrast /tmp/ckUtnuSS1e/contrast.vcf.gz -a NASSOC -0 a,b,c -1 d --force-samples | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +contrast /tmp/ckUtnuSS1e/contrast.bcf -a NASSOC -0 a,b,c -1 d --force-samples | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +contrast /tmp/ckUtnuSS1e/contrast.1.vcf.gz -a NOVELAL,NOVELGT -0 A -1 B | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +contrast /tmp/ckUtnuSS1e/contrast.1.bcf -a NOVELAL,NOVELGT -0 A -1 B | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +contrast /tmp/ckUtnuSS1e/contrast.1.vcf.gz -a NOVELGT -0 A -1 B | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +contrast /tmp/ckUtnuSS1e/contrast.1.bcf -a NOVELGT -0 A -1 B | grep -v ^##bcftools_
.. ok

test_trio_dnm3:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/trio-dnm3/test.sh /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/ckUtnuSS1e/trio-dnm/trio-dnm.1.vcf.gz -p proband,father,mother --use-ALM --ppl --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/ckUtnuSS1e/trio-dnm/trio-dnm.1.bcf -p proband,father,mother --use-ALM --ppl --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/ckUtnuSS1e/trio-dnm/trio-dnm.2.vcf.gz -p proband,father,mother --use-ALM --ppl --dnm-tag DNM:log --force-AD | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/ckUtnuSS1e/trio-dnm/trio-dnm.2.bcf -p proband,father,mother --use-ALM --ppl --dnm-tag DNM:log --force-AD | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/ckUtnuSS1e/trio-dnm/trio-dnm.4.vcf.gz -p proband,father,mother --use-DNG | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/ckUtnuSS1e/trio-dnm/trio-dnm.4.bcf -p proband,father,mother --use-DNG | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/ckUtnuSS1e/trio-dnm/trio-dnm.4.vcf.gz -p proband,father,mother --use-ALM | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/ckUtnuSS1e/trio-dnm/trio-dnm.4.bcf -p proband,father,mother --use-ALM | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/ckUtnuSS1e/trio-dnm/trio-dnm.4.vcf.gz -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/ckUtnuSS1e/trio-dnm/trio-dnm.4.bcf -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/ckUtnuSS1e/trio-dnm/trio-dnm.4.vcf.gz -p proband,father,mother --use-ALM --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/ckUtnuSS1e/trio-dnm/trio-dnm.4.bcf -p proband,father,mother --use-ALM --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/ckUtnuSS1e/trio-dnm/trio-dnm.5.vcf.gz -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/ckUtnuSS1e/trio-dnm/trio-dnm.5.bcf -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/ckUtnuSS1e/trio-dnm/trio-dnm.5.vcf.gz -p proband,father,mother --use-ALM --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/ckUtnuSS1e/trio-dnm/trio-dnm.5.bcf -p proband,father,mother --use-ALM --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/ckUtnuSS1e/trio-dnm/trio-dnm.6.vcf.gz -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/ckUtnuSS1e/trio-dnm/trio-dnm.6.bcf -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/ckUtnuSS1e/trio-dnm/trio-dnm.6.vcf.gz -p proband,father,mother --use-ALM --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\t[\t%VA]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/ckUtnuSS1e/trio-dnm/trio-dnm.6.bcf -p proband,father,mother --use-ALM --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\t[\t%VA]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/ckUtnuSS1e/trio-dnm/trio-dnm.7.vcf.gz -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/ckUtnuSS1e/trio-dnm/trio-dnm.7.bcf -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/ckUtnuSS1e/trio-dnm/trio-dnm.7.vcf.gz -p proband,father,mother --use-ALM --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/ckUtnuSS1e/trio-dnm/trio-dnm.7.bcf -p proband,father,mother --use-ALM --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/ckUtnuSS1e/trio-dnm/trio-dnm.8.vcf.gz -p proband,father,mother --use-ALM | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/ckUtnuSS1e/trio-dnm/trio-dnm.8.bcf -p proband,father,mother --use-ALM | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/ckUtnuSS1e/trio-dnm/trio-dnm.9.vcf.gz -p 1X:proband,father,mother --use-NAIVE | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/ckUtnuSS1e/trio-dnm/trio-dnm.9.bcf -p 1X:proband,father,mother --use-NAIVE | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/ckUtnuSS1e/trio-dnm/trio-dnm.9.vcf.gz -p 2X:proband,father,mother --use-NAIVE | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/ckUtnuSS1e/trio-dnm/trio-dnm.9.bcf -p 2X:proband,father,mother --use-NAIVE | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/ckUtnuSS1e/trio-dnm/trio-dnm.10.vcf.gz -p proband,father,mother --use-ALM --with-pAD | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM][\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/ckUtnuSS1e/trio-dnm/trio-dnm.10.bcf -p proband,father,mother --use-ALM --with-pAD | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM][\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/ckUtnuSS1e/trio-dnm/trio-dnm.11.vcf.gz -p 1X:proband,father,mother --use-ALM | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM:%POS  DNM=[%DNM ]\tAD=[%AD ]\tQS=[%QS ]\tVAF=[%VAF ]\tVA=[%VA ]' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/ckUtnuSS1e/trio-dnm/trio-dnm.11.bcf -p 1X:proband,father,mother --use-ALM | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM:%POS  DNM=[%DNM ]\tAD=[%AD ]\tQS=[%QS ]\tVAF=[%VAF ]\tVA=[%VA ]' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/ckUtnuSS1e/trio-dnm/trio-dnm.11.vcf.gz -p 1X:proband,father,mother --use-ALM --strictly-novel | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM:%POS  DNM=[%DNM ]\tAD=[%AD ]\tQS=[%QS ]\tVAF=[%VAF ]\tVA=[%VA ]' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/ckUtnuSS1e/trio-dnm/trio-dnm.11.bcf -p 1X:proband,father,mother --use-ALM --strictly-novel | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM:%POS  DNM=[%DNM ]\tAD=[%AD ]\tQS=[%QS ]\tVAF=[%VAF ]\tVA=[%VA ]' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/ckUtnuSS1e/trio-dnm/trio-dnm.12.vcf.gz -p child,dad,mom --with-cAD --max-QM -30 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM:%POS  DNM=[%DNM ]\tAD=[%AD ]\tVAF=[%VAF ]' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/ckUtnuSS1e/trio-dnm/trio-dnm.12.bcf -p child,dad,mom --with-cAD --max-QM -30 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM:%POS  DNM=[%DNM ]\tAD=[%AD ]\tVAF=[%VAF ]' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/ckUtnuSS1e/trio-dnm/trio-dnm.12.vcf.gz -p child,dad,mom --with-cAD --max-QM -30 --use-DMM | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM:%POS  DNM=[%DNM ]\tAD=[%AD ]\tVAF=[%VAF ]' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/ckUtnuSS1e/trio-dnm/trio-dnm.12.bcf -p child,dad,mom --with-cAD --max-QM -30 --use-DMM | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM:%POS  DNM=[%DNM ]\tAD=[%AD ]\tVAF=[%VAF ]' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +gvcfz /tmp/ckUtnuSS1e/gvcfz.vcf.gz -g 'PASS:GT!="alt"' -a | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%END[\t%GT][\t%DP][\t%GQ][\t%RGQ]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +gvcfz /tmp/ckUtnuSS1e/gvcfz.bcf -g 'PASS:GT!="alt"' -a | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%END[\t%GT][\t%DP][\t%GQ][\t%RGQ]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +gvcfz /tmp/ckUtnuSS1e/gvcfz.vcf.gz -g 'PASS:GQ>10; FLT:-' -a | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%FILTER\t%END[\t%GT][\t%DP][\t%GQ][\t%RGQ]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +gvcfz /tmp/ckUtnuSS1e/gvcfz.bcf -g 'PASS:GQ>10; FLT:-' -a | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%FILTER\t%END[\t%GT][\t%DP][\t%GQ][\t%RGQ]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +gvcfz /tmp/ckUtnuSS1e/gvcfz.2.vcf.gz -g 'PASS:GT!="alt"' -a | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%FILTER\t%END[\t%GT][\t%DP]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +gvcfz /tmp/ckUtnuSS1e/gvcfz.2.bcf -g 'PASS:GT!="alt"' -a | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%FILTER\t%END[\t%GT][\t%DP]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/ckUtnuSS1e/remove-overlaps.1.vcf.gz -m overlap | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/ckUtnuSS1e/remove-overlaps.1.bcf -m overlap | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/ckUtnuSS1e/remove-overlaps.1.vcf.gz -m overlap -M overlap | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/ckUtnuSS1e/remove-overlaps.1.bcf -m overlap -M overlap | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/ckUtnuSS1e/remove-overlaps.1.vcf.gz -m overlap -O t | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/ckUtnuSS1e/remove-overlaps.1.bcf -m overlap -O t | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/ckUtnuSS1e/remove-overlaps.1.vcf.gz -m overlap --reverse | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/ckUtnuSS1e/remove-overlaps.1.bcf -m overlap --reverse | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/ckUtnuSS1e/remove-overlaps.1.vcf.gz -m dup -M DUP | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/ckUtnuSS1e/remove-overlaps.1.bcf -m dup -M DUP | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/ckUtnuSS1e/remove-overlaps.1.vcf.gz -m dup -M unique --reverse | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/ckUtnuSS1e/remove-overlaps.1.bcf -m dup -M unique --reverse | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/ckUtnuSS1e/remove-overlaps.2.vcf.gz -m 'min(QUAL)' -M rmme | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/ckUtnuSS1e/remove-overlaps.2.bcf -m 'min(QUAL)' -M rmme | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/ckUtnuSS1e/remove-overlaps.3.vcf.gz -m 'min(QUAL)' -M rmme | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/ckUtnuSS1e/remove-overlaps.3.bcf -m 'min(QUAL)' -M rmme | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/ckUtnuSS1e/remove-overlaps.3.vcf.gz -m 'min(QUAL)' -M rmme --missing 0 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/ckUtnuSS1e/remove-overlaps.3.bcf -m 'min(QUAL)' -M rmme --missing 0 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/ckUtnuSS1e/remove-overlaps.3.vcf.gz -m 'min(QUAL)' -M rmme --missing DP | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/ckUtnuSS1e/remove-overlaps.3.bcf -m 'min(QUAL)' -M rmme --missing DP | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.icase.1.vcf.gz --csq-field Annotation_Impact -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split-vep.icase.1.severity -s :MODERATE+ -f '%Annotation_Impact\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.icase.1.bcf --csq-field Annotation_Impact -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split-vep.icase.1.severity -s :MODERATE+ -f '%Annotation_Impact\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.icase.1.vcf.gz --csq-field Annotation_Impact -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split-vep.icase.1.severity -s :moderate+ -f '%Annotation_Impact\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.icase.1.bcf --csq-field Annotation_Impact -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split-vep.icase.1.severity -s :moderate+ -f '%Annotation_Impact\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.12.vcf.gz -s all:any:worst -f '%CHROM\t%POS\t%Annotation\n' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.12.bcf -s all:any:worst -f '%CHROM\t%POS\t%Annotation\n' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.11.vcf.gz --csq-field Annotation -a XXX -f '%CHROM\t%POS\t%REF\t%ALT\t%XXX\n' -d -A tab | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.11.bcf --csq-field Annotation -a XXX -f '%CHROM\t%POS\t%REF\t%ALT\t%XXX\n' -d -A tab | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.11.vcf.gz --csq-field Annotation -a XXX -f '%POS %xAnnotation\n' -p x | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.11.bcf --csq-field Annotation -a XXX -f '%POS %xAnnotation\n' -p x | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.vcf.gz -c Consequence -s worst:missense+ | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.bcf -c Consequence -s worst:missense+ | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.vcf.gz -c Consequence -s worst:missense+:worst | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.bcf -c Consequence -s worst:missense+:worst | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.vcf.gz -c Consequence -s worst:missense+ | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%Consequence\n' -i'Consequence!="."' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.bcf -c Consequence -s worst:missense+ | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%Consequence\n' -i'Consequence!="."' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.vcf.gz -s worst:missense+ -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.bcf -s worst:missense+ -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.vcf.gz -c Consequence -s worst:missense+:worst | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%Consequence\n' -i'Consequence!="."' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.bcf -c Consequence -s worst:missense+:worst | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%Consequence\n' -i'Consequence!="."' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.vcf.gz -s worst:missense+:worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.bcf -s worst:missense+:worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.vcf.gz -s primary:missense+ -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.bcf -s primary:missense+ -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.vcf.gz -s CANONICAL=YES:missense+ -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.bcf -s CANONICAL=YES:missense+ -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.vcf.gz -s primary:missense+:worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.bcf -s primary:missense+:worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.vcf.gz -s CANONICAL=YES:missense+:worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.bcf -s CANONICAL=YES:missense+:worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.vcf.gz -s primary:missense+ -f'%POS\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.bcf -s primary:missense+ -f'%POS\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.vcf.gz -s CANONICAL=YES:missense+ -f'%POS\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.bcf -s CANONICAL=YES:missense+ -f'%POS\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.2.vcf.gz -s worst -f'%POS\t%AF\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.2.bcf -s worst -f'%POS\t%AF\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.2.vcf.gz -s worst -f'%POS\t%AF\n' -a BCSQ | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.2.bcf -s worst -f'%POS\t%AF\n' -a BCSQ | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.2.vcf.gz -s worst -f'%POS\t%INFO/AF\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.2.bcf -s worst -f'%POS\t%INFO/AF\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.2.vcf.gz -s worst -f'%POS\t%INFO/AF\n' -a BCSQ | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.2.bcf -s worst -f'%POS\t%INFO/AF\n' -a BCSQ | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.3.vcf.gz -s worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.3.bcf -s worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.3.vcf.gz -s worst::worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.3.bcf -s worst::worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.3.vcf.gz -s worst -f'[%POS\t%SAMPLE\t%GT\t%Consequence\n]' -i'GT="alt"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.3.bcf -s worst -f'[%POS\t%SAMPLE\t%GT\t%Consequence\n]' -i'GT="alt"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.vcf.gz -t 1:14464 -f '%POS\t%CANONICAL\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.bcf -t 1:14464 -f '%POS\t%CANONICAL\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.vcf.gz -t 1:14464 -f '%POS\t%CANONICAL\t%Consequence\n' -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.bcf -t 1:14464 -f '%POS\t%CANONICAL\t%Consequence\n' -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.vcf.gz -t 1:14464 -f '%POS\t%CSQ\n' -A tab | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.bcf -t 1:14464 -f '%POS\t%CSQ\n' -A tab | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.vcf.gz -t 1:14464 -f '%POS\t%CSQ\n' -A tab -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.bcf -t 1:14464 -f '%POS\t%CSQ\n' -A tab -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.vcf.gz -t 1:14464 -f '%POS\t%CSQ\n' -A tab -d -H | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.bcf -t 1:14464 -f '%POS\t%CSQ\n' -A tab -d -H | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.vcf.gz -t 1:14464 -f '%POS\t%CSQ\n' -A tab -d -HH | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.bcf -t 1:14464 -f '%POS\t%CSQ\n' -A tab -d -HH | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.vcf.gz -t 1:14464 -f '%POS\t%CSQ\n' -A @@@ -d -H | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.bcf -t 1:14464 -f '%POS\t%CSQ\n' -A @@@ -d -H | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.4.vcf.gz -f '%POS\t%BCSQ\n' -a BCSQ -A tab -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.4.bcf -f '%POS\t%BCSQ\n' -a BCSQ -A tab -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.4.vcf.gz -f '%POS\t%BCSQ\n'         -A tab -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.4.bcf -f '%POS\t%BCSQ\n'         -A tab -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.4.vcf.gz -f '%POS\t%BCSQ\n' -a BCSQ -A tab -d -s ::worst | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.4.bcf -f '%POS\t%BCSQ\n' -a BCSQ -A tab -d -s ::worst | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.4.vcf.gz -f '%POS\t%BCSQ\n'         -A tab -d -s ::worst | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.4.bcf -f '%POS\t%BCSQ\n'         -A tab -d -s ::worst | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.vcf.gz -c gnomAD_NFE_AF:real,ALLELE_NUM:int | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%gnomAD_NFE_AF\t%ALLELE_NUM\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.bcf -c gnomAD_NFE_AF:real,ALLELE_NUM:int | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%gnomAD_NFE_AF\t%ALLELE_NUM\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.vcf.gz -c gnomAD_NFE_AF,ALLELE_NUM          | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%gnomAD_NFE_AF\t%ALLELE_NUM\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.bcf -c gnomAD_NFE_AF,ALLELE_NUM          | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%gnomAD_NFE_AF\t%ALLELE_NUM\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.5.vcf.gz -s :synonymous    -c Consequence | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.5.bcf -s :synonymous    -c Consequence | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.5.vcf.gz -s :synonymous -x -c Consequence | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.5.bcf -s :synonymous -x -c Consequence | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.6.vcf.gz -c SAS_AF | grep ID=SAS_AF | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.6.bcf -c SAS_AF | grep ID=SAS_AF | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.6.vcf.gz -c - | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.6.bcf -c - | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.6.vcf.gz -c - -s worst | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.6.bcf -c - -s worst | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.7.vcf.gz --annotation 'ANN' -c IMPACT -i 'INFO/IMPACT[*] ~ "MODIFIER"' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.7.bcf --annotation 'ANN' -c IMPACT -i 'INFO/IMPACT[*] ~ "MODIFIER"' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.8.vcf.gz -a BCSQ -s worst -c Consequence,amino_acid_change,BCSQ | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.8.bcf -a BCSQ -s worst -c Consequence,amino_acid_change,BCSQ | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.8.vcf.gz         -s worst -c Consequence,amino_acid_change,BCSQ | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.8.bcf         -s worst -c Consequence,amino_acid_change,BCSQ | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.8.vcf.gz -a BCSQ -s worst -f '%POS\t%Consequence\t%amino_acid_change\t%BCSQ\n' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.8.bcf -a BCSQ -s worst -f '%POS\t%Consequence\t%amino_acid_change\t%BCSQ\n' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.8.vcf.gz         -s worst -f '%POS\t%Consequence\t%amino_acid_change\t%BCSQ\n' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.8.bcf         -s worst -f '%POS\t%Consequence\t%amino_acid_change\t%BCSQ\n' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.9.vcf.gz -a BCSQ -f '%CHROM\t%POS\t%REF\t%ALT\t%BCSQ\n' -d -A tab | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.9.bcf -a BCSQ -f '%CHROM\t%POS\t%REF\t%ALT\t%BCSQ\n' -d -A tab | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.9.vcf.gz -a BCSQ -f '%xPOS %xConsequence\n' -p x | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.9.bcf -a BCSQ -f '%xPOS %xConsequence\n' -p x | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.10.vcf.gz -a CSQ -f '%M_CAP_pred %M_CAP_score\n' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.10.bcf -a CSQ -f '%M_CAP_pred %M_CAP_score\n' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.10.vcf.gz -a CSQ -f '%xM_CAP_pred %xM_CAP_score\n' -p x | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.10.bcf -a CSQ -f '%xM_CAP_pred %xM_CAP_score\n' -p x | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.10.vcf.gz        -f '%xM_CAP_pred %xM_CAP_score\n' -p x | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.10.bcf        -f '%xM_CAP_pred %xM_CAP_score\n' -p x | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.gene-list.vcf.gz -d -f '%CHROM:%POS %Gene %Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.gene-list.bcf -d -f '%CHROM:%POS %Gene %Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.gene-list.vcf.gz -d -f '%CHROM:%POS %Gene %Consequence\n' -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split-vep.gene-list.txt | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.gene-list.bcf -d -f '%CHROM:%POS %Gene %Consequence\n' -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split-vep.gene-list.txt | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.gene-list.vcf.gz -d -f '%CHROM:%POS %Gene %Consequence\n' -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split-vep.mixed-list.txt --gene-list-fields Feature,SYMBOL | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.gene-list.bcf -d -f '%CHROM:%POS %Gene %Consequence\n' -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split-vep.mixed-list.txt --gene-list-fields Feature,SYMBOL | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.gene-list.vcf.gz -d -f '%CHROM:%POS %Gene %Consequence\n' -g +/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split-vep.gene-list.txt | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.gene-list.bcf -d -f '%CHROM:%POS %Gene %Consequence\n' -g +/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split-vep.gene-list.txt | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.gene-list.vcf.gz -d -f '%CHROM:%POS %Gene %Consequence\n' -g +/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split-vep.mixed-list.txt --gene-list-fields Feature,SYMBOL | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.gene-list.bcf -d -f '%CHROM:%POS %Gene %Consequence\n' -g +/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split-vep.mixed-list.txt --gene-list-fields Feature,SYMBOL | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.broken-LoF.vcf.gz -d -f '%CHROM:%POS %Consequence %LoF_info\n' -a vep | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.broken-LoF.bcf -d -f '%CHROM:%POS %Consequence %LoF_info\n' -a vep | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.broken-LoF.vcf.gz -d -f '%CHROM:%POS %LoF_info\n' -a vep -i 'Consequence=="frameshift_variant"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.broken-LoF.bcf -d -f '%CHROM:%POS %LoF_info\n' -a vep -i 'Consequence=="frameshift_variant"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.vcf.gz -f'%POS\n' -i'SYMBOL~"SAMD11"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.bcf -f'%POS\n' -i'SYMBOL~"SAMD11"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.vcf.gz -f'%POS\t%MAX_AF\n' -i'MAX_AF>0.999' -c MAX_AF,MAX_AF:float,MAX_AF | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.bcf -f'%POS\t%MAX_AF\n' -i'MAX_AF>0.999' -c MAX_AF,MAX_AF:float,MAX_AF | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.filter.vcf.gz -s worst -i'CSQ~"nonsense"' -f '%POS %Consequence %Feature %BIOTYPE' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.filter.bcf -s worst -i'CSQ~"nonsense"' -f '%POS %Consequence %Feature %BIOTYPE' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.filter.vcf.gz -s worst -i'CSQ~"nonsense"' -f '%POS %Consequence %Feature %BIOTYPE %CSQ' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.filter.bcf -s worst -i'CSQ~"nonsense"' -f '%POS %Consequence %Feature %BIOTYPE %CSQ' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.select-tr-expr.vcf.gz -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s primary | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.select-tr-expr.bcf -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s primary | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.select-tr-expr.vcf.gz -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s CANONICAL=YES | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.select-tr-expr.bcf -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s CANONICAL=YES | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.select-tr-expr.vcf.gz -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s CANONICAL!=YES | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.select-tr-expr.bcf -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s CANONICAL!=YES | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.select-tr-expr.vcf.gz -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s CANONICAL= | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.select-tr-expr.bcf -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s CANONICAL= | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.select-tr-expr.vcf.gz -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s mane | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.select-tr-expr.bcf -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s mane | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.select-tr-expr.vcf.gz -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s MANE_SELECT!='' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.select-tr-expr.bcf -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s MANE_SELECT!='' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.select-tr-expr.vcf.gz -s mane | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.select-tr-expr.bcf -s mane | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.select-tr-expr.vcf.gz -s primary | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.select-tr-expr.bcf -s primary | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.select-tr-expr.vcf.gz -s PolyPhen~damaging | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.select-tr-expr.bcf -s PolyPhen~damaging | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.types.vcf.gz -f'%cDNA_position %CDS_position %Protein_position' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.types.bcf -f'%cDNA_position %CDS_position %Protein_position' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.types.vcf.gz -f'%cDNA_position %CDS_position %Protein_position' -c cDNA_position:int,CDS_position:int,Protein_position:int | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.types.bcf -f'%cDNA_position %CDS_position %Protein_position' -c cDNA_position:int,CDS_position:int,Protein_position:int | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.filter-missing-bt2098.vcf.gz -e 'gnomad_genomes_AF >= 0.02' | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM %POS 	 %gnomad_genomes_AF
' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.filter-missing-bt2098.bcf -e 'gnomad_genomes_AF >= 0.02' | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM %POS 	 %gnomad_genomes_AF
' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.filter-missing-bt2098.vcf.gz -i 'gnomad_genomes_AF < 0.02 || gnomad_genomes_AF=="."' | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM %POS 	 %gnomad_genomes_AF
' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/ckUtnuSS1e/split-vep.filter-missing-bt2098.bcf -i 'gnomad_genomes_AF < 0.02 || gnomad_genomes_AF=="."' | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM %POS 	 %gnomad_genomes_AF
' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +parental-origin /tmp/ckUtnuSS1e/parental-origin.vcf.gz -r 20:100 -p proband,father,mother -t del | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +parental-origin /tmp/ckUtnuSS1e/parental-origin.bcf -r 20:100 -p proband,father,mother -t del | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +parental-origin /tmp/ckUtnuSS1e/parental-origin.vcf.gz -r 20:101 -p proband,father,mother -t del | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +parental-origin /tmp/ckUtnuSS1e/parental-origin.bcf -r 20:101 -p proband,father,mother -t del | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +parental-origin /tmp/ckUtnuSS1e/parental-origin.vcf.gz -r 20:102 -p proband,father,mother -t del | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +parental-origin /tmp/ckUtnuSS1e/parental-origin.bcf -r 20:102 -p proband,father,mother -t del | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +parental-origin /tmp/ckUtnuSS1e/parental-origin.vcf.gz -r 20:103 -p proband,father,mother -t dup | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +parental-origin /tmp/ckUtnuSS1e/parental-origin.bcf -r 20:103 -p proband,father,mother -t dup | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +parental-origin /tmp/ckUtnuSS1e/parental-origin.vcf.gz -r 20:104 -p proband,father,mother -t dup | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +parental-origin /tmp/ckUtnuSS1e/parental-origin.bcf -r 20:104 -p proband,father,mother -t dup | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 1 -a r2,LD,HD /tmp/ckUtnuSS1e/prune.1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 1 -a r2,LD,HD /tmp/ckUtnuSS1e/prune.1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 1 -a r2,LD,HD /tmp/ckUtnuSS1e/prune.2.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 1 -a r2,LD,HD /tmp/ckUtnuSS1e/prune.2.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 2 -a r2 -m 0.5 -f MaxR2 /tmp/ckUtnuSS1e/prune.1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 2 -a r2 -m 0.5 -f MaxR2 /tmp/ckUtnuSS1e/prune.1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 2 -a r2 -m 0.5  /tmp/ckUtnuSS1e/prune.1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 2 -a r2 -m 0.5  /tmp/ckUtnuSS1e/prune.1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 2bp -n 1 --AF-tag AF /tmp/ckUtnuSS1e/prune.1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 2bp -n 1 --AF-tag AF /tmp/ckUtnuSS1e/prune.1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 2bp -n 1 --AF-tag AF -i 'GT="alt"' /tmp/ckUtnuSS1e/prune.1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 2bp -n 1 --AF-tag AF -i 'GT="alt"' /tmp/ckUtnuSS1e/prune.1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 2bp -n 1 -N 1st /tmp/ckUtnuSS1e/prune.1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 2bp -n 1 -N 1st /tmp/ckUtnuSS1e/prune.1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 2bp -n 1 -N rand --random-seed 1 /tmp/ckUtnuSS1e/prune.1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 2bp -n 1 -N rand --random-seed 1 /tmp/ckUtnuSS1e/prune.1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 3bp -a count -i 'XX!=0' -k /tmp/ckUtnuSS1e/prune.3.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 3bp -a count -i 'XX!=0' -k /tmp/ckUtnuSS1e/prune.3.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 3bp -a count -i 'XX!=0' /tmp/ckUtnuSS1e/prune.3.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 3bp -a count -i 'XX!=0' /tmp/ckUtnuSS1e/prune.3.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 3bp -m count=2 -i 'XX!=0' /tmp/ckUtnuSS1e/prune.3.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 3bp -m count=2 -i 'XX!=0' /tmp/ckUtnuSS1e/prune.3.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +variant-distance /tmp/ckUtnuSS1e/variant-distance.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +variant-distance /tmp/ckUtnuSS1e/variant-distance.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +variant-distance -d nearest /tmp/ckUtnuSS1e/variant-distance.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +variant-distance -d nearest /tmp/ckUtnuSS1e/variant-distance.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +variant-distance -d fwd /tmp/ckUtnuSS1e/variant-distance.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +variant-distance -d fwd /tmp/ckUtnuSS1e/variant-distance.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +variant-distance -d rev /tmp/ckUtnuSS1e/variant-distance.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +variant-distance -d rev /tmp/ckUtnuSS1e/variant-distance.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +variant-distance -d both /tmp/ckUtnuSS1e/variant-distance.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +variant-distance -d both /tmp/ckUtnuSS1e/variant-distance.bcf  | grep -v ^##bcftools_
.. ok

test_plugin_vrfs:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +vrfs -a /tmp/ckUtnuSS1e/mpileup.bam.list -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/vrfs.sites.txt | sort
.. ok

test_plugin_split:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split.1.vcf -o /tmp/ckUtnuSS1e/split.1.1   && cd /tmp/ckUtnuSS1e/split.1.1  && for f in A1.vcf A2.vcf A3.vcf B1.vcf B2.vcf C.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H $f; done
.. ok

test_plugin_split:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split.1.vcf -o /tmp/ckUtnuSS1e/split.1.2 -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split.smpl.1.2.txt  && cd /tmp/ckUtnuSS1e/split.1.2  && for f in A.vcf B.vcf C.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H $f; done
.. ok

test_plugin_split:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split.1.vcf -o /tmp/ckUtnuSS1e/split.1.3 -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split.smpl.1.3.txt  && cd /tmp/ckUtnuSS1e/split.1.3  && for f in a3.vcf b2.vcf c.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H $f; done
.. ok

test_plugin_split:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split.1.vcf -o /tmp/ckUtnuSS1e/split.1.4 -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split.smpl.1.3.txt -i 'GT[0]="alt"'  && cd /tmp/ckUtnuSS1e/split.1.4  && for f in a3.vcf b2.vcf c.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H $f; done
.. ok

test_plugin_split:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split.1.vcf -o /tmp/ckUtnuSS1e/split.1.5 -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split.smpl.1.3.txt -i 'GT="alt"'  && cd /tmp/ckUtnuSS1e/split.1.5  && for f in a3.vcf b2.vcf c.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H $f; done
.. ok

test_plugin_split:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split.1.vcf -o /tmp/ckUtnuSS1e/split.1.6 -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split.smpl.1.4.txt -i 'GT="alt"'  && cd /tmp/ckUtnuSS1e/split.1.6  && for f in file1.vcf file2.vcf file3.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H $f; done
.. ok

test_plugin_split:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split.1.vcf -o /tmp/ckUtnuSS1e/split.1.7 -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split.grp.1.1.txt  && cd /tmp/ckUtnuSS1e/split.1.7  && for f in A.vcf A1.vcf A2.vcf B.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H $f; done
.. ok

test_plugin_split:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split.2.vcf -o /tmp/ckUtnuSS1e/split.2.1   && cd /tmp/ckUtnuSS1e/split.2.1  && for f in A1_A1-1.vcf A1_A1-2.vcf A1_A1.vcf B1.vcf B2.vcf C.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H $f; done
.. ok

test_plugin_scatter:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +scatter /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/scatter.1.vcf -o /tmp/ckUtnuSS1e/scatter.1.1 -n 3 && cd /tmp/ckUtnuSS1e/scatter.1.1 && cat 0.vcf 1.vcf 2.vcf | grep -v ^##
.. ok

test_plugin_scatter:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +scatter /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/scatter.1.vcf -o /tmp/ckUtnuSS1e/scatter.1.2 -s 21,22 && cd /tmp/ckUtnuSS1e/scatter.1.2 && cat 21.vcf 22.vcf | grep -v ^##
.. ok

test_plugin_scatter:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +scatter /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/scatter.1.vcf -o /tmp/ckUtnuSS1e/scatter.1.3 -s 21,22 -x X && cd /tmp/ckUtnuSS1e/scatter.1.3 && cat 21.vcf 22.vcf X.vcf | grep -v ^##
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --no-version -G  /tmp/ckUtnuSS1e/concat.1.a.vcf.gz /tmp/ckUtnuSS1e/concat.1.b.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat -Ob -G  /tmp/ckUtnuSS1e/concat.1.a.vcf.gz /tmp/ckUtnuSS1e/concat.1.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --no-version -G  /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/concat.1.a.vcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/concat.1.b.vcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --no-version   /tmp/ckUtnuSS1e/concat.1.a.vcf.gz /tmp/ckUtnuSS1e/concat.1.b.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat -Ob   /tmp/ckUtnuSS1e/concat.1.a.vcf.gz /tmp/ckUtnuSS1e/concat.1.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --no-version   /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/concat.1.a.vcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/concat.1.b.vcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --no-version   /tmp/ckUtnuSS1e/concat.1.a.bcf /tmp/ckUtnuSS1e/concat.1.b.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat -Ob   /tmp/ckUtnuSS1e/concat.1.a.bcf /tmp/ckUtnuSS1e/concat.1.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --no-version -a  /tmp/ckUtnuSS1e/concat.2.a.vcf.gz /tmp/ckUtnuSS1e/concat.2.b.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat -Ob -a  /tmp/ckUtnuSS1e/concat.2.a.vcf.gz /tmp/ckUtnuSS1e/concat.2.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --no-version -a  /tmp/ckUtnuSS1e/concat.2.a.bcf /tmp/ckUtnuSS1e/concat.2.b.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat -Ob -a  /tmp/ckUtnuSS1e/concat.2.a.bcf /tmp/ckUtnuSS1e/concat.2.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --no-version -aD  /tmp/ckUtnuSS1e/concat.2.a.vcf.gz /tmp/ckUtnuSS1e/concat.2.b.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat -Ob -aD  /tmp/ckUtnuSS1e/concat.2.a.vcf.gz /tmp/ckUtnuSS1e/concat.2.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --no-version -aD  /tmp/ckUtnuSS1e/concat.2.a.bcf /tmp/ckUtnuSS1e/concat.2.b.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat -Ob -aD  /tmp/ckUtnuSS1e/concat.2.a.bcf /tmp/ckUtnuSS1e/concat.2.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --no-version -l --ligate-warn  /tmp/ckUtnuSS1e/concat.3.a.vcf.gz /tmp/ckUtnuSS1e/concat.3.b.vcf.gz /tmp/ckUtnuSS1e/concat.3.0.vcf.gz /tmp/ckUtnuSS1e/concat.3.c.vcf.gz /tmp/ckUtnuSS1e/concat.3.d.vcf.gz /tmp/ckUtnuSS1e/concat.3.e.vcf.gz /tmp/ckUtnuSS1e/concat.3.f.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat -Ob -l --ligate-warn  /tmp/ckUtnuSS1e/concat.3.a.vcf.gz /tmp/ckUtnuSS1e/concat.3.b.vcf.gz /tmp/ckUtnuSS1e/concat.3.0.vcf.gz /tmp/ckUtnuSS1e/concat.3.c.vcf.gz /tmp/ckUtnuSS1e/concat.3.d.vcf.gz /tmp/ckUtnuSS1e/concat.3.e.vcf.gz /tmp/ckUtnuSS1e/concat.3.f.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --no-version -l --ligate-warn  /tmp/ckUtnuSS1e/concat.3.a.bcf /tmp/ckUtnuSS1e/concat.3.b.bcf /tmp/ckUtnuSS1e/concat.3.0.bcf /tmp/ckUtnuSS1e/concat.3.c.bcf /tmp/ckUtnuSS1e/concat.3.d.bcf /tmp/ckUtnuSS1e/concat.3.e.bcf /tmp/ckUtnuSS1e/concat.3.f.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat -Ob -l --ligate-warn  /tmp/ckUtnuSS1e/concat.3.a.bcf /tmp/ckUtnuSS1e/concat.3.b.bcf /tmp/ckUtnuSS1e/concat.3.0.bcf /tmp/ckUtnuSS1e/concat.3.c.bcf /tmp/ckUtnuSS1e/concat.3.d.bcf /tmp/ckUtnuSS1e/concat.3.e.bcf /tmp/ckUtnuSS1e/concat.3.f.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
Random seed for test_naive_concat: 18289742505541919084
.. ok

test_naive_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --naive-force /tmp/ckUtnuSS1e/naive_concat.0.bcf /tmp/ckUtnuSS1e/naive_concat.1.bcf /tmp/ckUtnuSS1e/naive_concat.2.bcf /tmp/ckUtnuSS1e/naive_concat.3.bcf /tmp/ckUtnuSS1e/naive_concat.4.bcf /tmp/ckUtnuSS1e/naive_concat.5.bcf /tmp/ckUtnuSS1e/naive_concat.6.bcf /tmp/ckUtnuSS1e/naive_concat.7.bcf /tmp/ckUtnuSS1e/naive_concat.8.bcf /tmp/ckUtnuSS1e/naive_concat.9.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H
.. ok

test_naive_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --naive /tmp/ckUtnuSS1e/naive_concat.0.vcf.gz /tmp/ckUtnuSS1e/naive_concat.1.vcf.gz /tmp/ckUtnuSS1e/naive_concat.2.vcf.gz /tmp/ckUtnuSS1e/naive_concat.3.vcf.gz /tmp/ckUtnuSS1e/naive_concat.4.vcf.gz /tmp/ckUtnuSS1e/naive_concat.5.vcf.gz /tmp/ckUtnuSS1e/naive_concat.6.vcf.gz /tmp/ckUtnuSS1e/naive_concat.7.vcf.gz /tmp/ckUtnuSS1e/naive_concat.8.vcf.gz /tmp/ckUtnuSS1e/naive_concat.9.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --no-version -l  /tmp/ckUtnuSS1e/concat.4.a.vcf.gz /tmp/ckUtnuSS1e/concat.4.b.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat -Ob -l  /tmp/ckUtnuSS1e/concat.4.a.vcf.gz /tmp/ckUtnuSS1e/concat.4.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --no-version -l  /tmp/ckUtnuSS1e/concat.4.a.bcf /tmp/ckUtnuSS1e/concat.4.b.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat -Ob -l  /tmp/ckUtnuSS1e/concat.4.a.bcf /tmp/ckUtnuSS1e/concat.4.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --no-version -l --ligate-warn  /tmp/ckUtnuSS1e/concat.5.a.vcf.gz /tmp/ckUtnuSS1e/concat.5.b.vcf.gz /tmp/ckUtnuSS1e/concat.5.c.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat -Ob -l --ligate-warn  /tmp/ckUtnuSS1e/concat.5.a.vcf.gz /tmp/ckUtnuSS1e/concat.5.b.vcf.gz /tmp/ckUtnuSS1e/concat.5.c.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --no-version -l --ligate-warn  /tmp/ckUtnuSS1e/concat.5.a.bcf /tmp/ckUtnuSS1e/concat.5.b.bcf /tmp/ckUtnuSS1e/concat.5.c.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat -Ob -l --ligate-warn  /tmp/ckUtnuSS1e/concat.5.a.bcf /tmp/ckUtnuSS1e/concat.5.b.bcf /tmp/ckUtnuSS1e/concat.5.c.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --no-version -l --ligate-force  /tmp/ckUtnuSS1e/concat.5.a.bcf /tmp/ckUtnuSS1e/concat.5.b.bcf /tmp/ckUtnuSS1e/concat.5.c.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat -Ob -l --ligate-force  /tmp/ckUtnuSS1e/concat.5.a.bcf /tmp/ckUtnuSS1e/concat.5.b.bcf /tmp/ckUtnuSS1e/concat.5.c.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --no-version -G -a -D  /tmp/ckUtnuSS1e/concat.5.a.vcf.gz /tmp/ckUtnuSS1e/concat.5.b.vcf.gz /tmp/ckUtnuSS1e/concat.5.c.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat -Ob -G -a -D  /tmp/ckUtnuSS1e/concat.5.a.vcf.gz /tmp/ckUtnuSS1e/concat.5.b.vcf.gz /tmp/ckUtnuSS1e/concat.5.c.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --no-version -G -a -D  /tmp/ckUtnuSS1e/concat.5.a.bcf /tmp/ckUtnuSS1e/concat.5.b.bcf /tmp/ckUtnuSS1e/concat.5.c.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat -Ob -G -a -D  /tmp/ckUtnuSS1e/concat.5.a.bcf /tmp/ckUtnuSS1e/concat.5.b.bcf /tmp/ckUtnuSS1e/concat.5.c.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.hdr /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.hdr | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.hdr /tmp/ckUtnuSS1e/reheader.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/ckUtnuSS1e/reheader.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.hdr | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.hdr /tmp/ckUtnuSS1e/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/ckUtnuSS1e/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.hdr | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples /tmp/ckUtnuSS1e/reheader.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/ckUtnuSS1e/reheader.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples /tmp/ckUtnuSS1e/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/ckUtnuSS1e/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -N /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -N /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -N /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples /tmp/ckUtnuSS1e/reheader.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/ckUtnuSS1e/reheader.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -N /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -N /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples /tmp/ckUtnuSS1e/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/ckUtnuSS1e/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -N /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -n AAA,BBB /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -n AAA,BBB | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -n AAA,BBB /tmp/ckUtnuSS1e/reheader.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/ckUtnuSS1e/reheader.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -n AAA,BBB | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -n AAA,BBB /tmp/ckUtnuSS1e/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/ckUtnuSS1e/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -n AAA,BBB | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples2 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples2 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples2 /tmp/ckUtnuSS1e/reheader.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/ckUtnuSS1e/reheader.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples2 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples2 /tmp/ckUtnuSS1e/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/ckUtnuSS1e/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples2 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples3 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples3 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples3 /tmp/ckUtnuSS1e/reheader.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/ckUtnuSS1e/reheader.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples3 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples3 /tmp/ckUtnuSS1e/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/ckUtnuSS1e/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples3 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples4 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples4 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples4 /tmp/ckUtnuSS1e/reheader.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/ckUtnuSS1e/reheader.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples4 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples4 /tmp/ckUtnuSS1e/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/ckUtnuSS1e/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples4 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.empty.hdr /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/empty.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/empty.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.empty.hdr | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.empty.hdr /tmp/ckUtnuSS1e/empty.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/ckUtnuSS1e/empty.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.empty.hdr | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.empty.hdr /tmp/ckUtnuSS1e/empty.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/ckUtnuSS1e/empty.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.empty.hdr | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.fai /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.fai /tmp/ckUtnuSS1e/reheader.2.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.fai /tmp/ckUtnuSS1e/reheader.2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.2.hdr -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.fai /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.2.hdr -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.fai /tmp/ckUtnuSS1e/reheader.2.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.2.hdr -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.fai /tmp/ckUtnuSS1e/reheader.2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.3.fai /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.3.fai /tmp/ckUtnuSS1e/reheader.3.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.3.fai /tmp/ckUtnuSS1e/reheader.3.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_rename_chrs:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate --rename-chrs /tmp/ckUtnuSS1e/rename.map -Ov /tmp/ckUtnuSS1e/annotate.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM\t%POS\n'
.. ok

test_rename_chrs:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate --rename-chrs /tmp/ckUtnuSS1e/rename.map -Ob /tmp/ckUtnuSS1e/annotate.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM\t%POS\n'
.. ok

test_rename_chrs:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate --rename-chrs /tmp/ckUtnuSS1e/rename.map -Ov /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM\t%POS\n'
.. ok

test_rename_chrs:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate --rename-chrs /tmp/ckUtnuSS1e/rename.map -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM\t%POS\n'
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g -,. /tmp/ckUtnuSS1e/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g -,.
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g -,. --vcf-ids /tmp/ckUtnuSS1e/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g -,. --vcf-ids
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g -,. --vcf-ids --3N6 /tmp/ckUtnuSS1e/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g -,. --vcf-ids --3N6
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g .,- /tmp/ckUtnuSS1e/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g .,-
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert  --vcf-ids -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.ids.gen,/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert  --vcf-ids -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.ids.gen,/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.ids.gen,/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.ids.gen,/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --3N6 -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.ids.3N6.gen,/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --3N6 -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.ids.3N6.gen,/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --vcf-ids -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.ids.gen.rev,/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --vcf-ids -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.ids.gen.rev,/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.ids.gen.rev,/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.ids.gen.rev,/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g -,. --tag PL /tmp/ckUtnuSS1e/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g -,. --tag PL
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g .,- --tag PL /tmp/ckUtnuSS1e/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g .,- --tag PL
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g -,. --vcf-ids /tmp/ckUtnuSS1e/check.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/check.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g -,. --vcf-ids
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g .,- --vcf-ids /tmp/ckUtnuSS1e/check.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/check.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g .,- --vcf-ids
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g -,. --3N6 /tmp/ckUtnuSS1e/check.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/check.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g -,. --3N6
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g .,- --3N6 /tmp/ckUtnuSS1e/check.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/check.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g .,- --3N6
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g -,. --3N6 --vcf-ids /tmp/ckUtnuSS1e/check.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/check.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g -,. --3N6 --vcf-ids
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g .,- --3N6 --vcf-ids /tmp/ckUtnuSS1e/check.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/check.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g .,- --3N6 --vcf-ids
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -h -,.,. /tmp/ckUtnuSS1e/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -h -,.,.
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -h .,-,. /tmp/ckUtnuSS1e/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -h .,-,.
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -h .,-,. --vcf-ids /tmp/ckUtnuSS1e/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -h .,-,. --vcf-ids
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -h .,.,- /tmp/ckUtnuSS1e/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -h .,.,-
.. ok

test_vcf_convert_hls2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -H /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.hls.gt.hap,/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.hls.gt.legend,/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.hls.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hls2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -H /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.hls.gt.hap,/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.hls.gt.legend,/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.hls.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --haplegendsample -,.,. /tmp/ckUtnuSS1e/convert.hap-missing.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/convert.hap-missing.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --haplegendsample -,.,.
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --hapsample -,. /tmp/ckUtnuSS1e/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --hapsample -,.
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --hapsample -,. --vcf-ids /tmp/ckUtnuSS1e/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --hapsample -,. --vcf-ids
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --hapsample .,- /tmp/ckUtnuSS1e/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --hapsample .,-
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --hapsample2vcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.hs.gt.hap,/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.hs.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --hapsample2vcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.hs.gt.hap,/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.hs.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --vcf-ids --hapsample2vcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.hs.gt.ids.hap,/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.hs.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --vcf-ids --hapsample2vcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.hs.gt.ids.hap,/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.hs.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##
.. ok

test_vcf_convert_gvcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --no-version --gvcf2vcf -i'FILTER="PASS"' -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa /tmp/ckUtnuSS1e/convert.gvcf.vcf.gz
.. ok

test_vcf_convert_gvcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --no-version --gvcf2vcf -i'FILTER="PASS"' -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa /tmp/ckUtnuSS1e/convert.gvcf.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_convert_gvcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/convert.gvcf.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --gvcf2vcf -i'FILTER="PASS"' -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa | grep -v ^##bcftools
.. ok

test_vcf_convert_gvcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --no-version --gvcf2vcf -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa /tmp/ckUtnuSS1e/convert.gvcf.2.vcf.gz
.. ok

test_vcf_convert_gvcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --no-version --gvcf2vcf -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa /tmp/ckUtnuSS1e/convert.gvcf.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_convert_gvcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/ckUtnuSS1e/convert.gvcf.2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --gvcf2vcf -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa | grep -v ^##bcftools
.. ok

test_vcf_convert_tsv2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --no-version  -c ID,CHROM,POS,AA -s SAMPLE1 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/23andme.fa --tsv2vcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.23andme
.. ok

test_vcf_convert_tsv2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -Ou  -c ID,CHROM,POS,AA -s SAMPLE1 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/23andme.fa --tsv2vcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.23andme | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_convert_tsv2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --no-version  -c -,CHROM,POS,REF,ALT -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/23andme.fa --tsv2vcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.tsv
.. ok

test_vcf_convert_tsv2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -Ou  -c -,CHROM,POS,REF,ALT -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/23andme.fa --tsv2vcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.tsv | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.gvcf-missing.1.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.gvcf-missing.fa --missing N  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.gvcf-missing.1.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.gvcf-missing.fa --missing N  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.overlaps.1.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.overlaps.2.fa -s A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.overlaps.1.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.overlaps.2.fa -s A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.overlaps.1.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.overlaps.1.fa -s A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.overlaps.1.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.overlaps.1.fa -s A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.overlaps.1.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.overlaps.1.fa -s B  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.overlaps.1.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.overlaps.1.fa -s B  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.overlaps.1.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.overlaps.1.fa -s A -a N  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.overlaps.1.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.overlaps.1.fa -s A -a N  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.overlaps.1.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.overlaps.1.fa -s B -a N  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.overlaps.1.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.overlaps.1.fa -s B -a N  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.beyond.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.beyond.fa   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.beyond.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.beyond.fa   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s - -m /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.tab 
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s - -m /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.tab 
.. ok

test_vcf_consensus_chain:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s - -m /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.tab -c /tmp/ckUtnuSS1e/consensus.1.chain.new >/dev/null; cat /tmp/ckUtnuSS1e/consensus.1.chain.new
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -H 1 -m /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.tab 
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -H 1 -m /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.tab 
.. ok

test_vcf_consensus_chain:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -H 1 -m /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.tab -c /tmp/ckUtnuSS1e/consensus.2.chain.new >/dev/null; cat /tmp/ckUtnuSS1e/consensus.2.chain.new
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -I -s - -m /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.tab 
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -I -s - -m /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.tab 
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s - -I -m /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.tab --mask-with X -m /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.tab --mask-with lc  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s - -I -m /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.tab --mask-with X -m /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.tab --mask-with lc  
.. ok

test_vcf_consensus_chain:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -I -m /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.tab -c /tmp/ckUtnuSS1e/consensus.3.chain.new >/dev/null; cat /tmp/ckUtnuSS1e/consensus.3.chain.new
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -H 1  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -H 1  
.. ok

test_vcf_consensus_chain:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -H 1  -c /tmp/ckUtnuSS1e/consensus.4.chain.new >/dev/null; cat /tmp/ckUtnuSS1e/consensus.4.chain.new
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus2.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus2.fa -H 1  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus2.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus2.fa -H 1  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus2.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus2.fa -H 2  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus2.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus2.fa -H 2  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/empty.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/empty.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus3.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus2.fa -H 2 -M "?"  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus3.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus2.fa -H 2 -M "?"  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus3.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus2.fa -H 2 -M "?" -p xx_  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus3.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus2.fa -H 2 -M "?" -p xx_  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus4.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus2.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus4.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus2.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus5.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus5.fa --haplotype LA  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus5.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus5.fa --haplotype LA  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus6.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus6.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus6.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus6.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus7.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus7.fa -H 2  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus7.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus7.fa -H 2  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus7.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus7.fa -H 4  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus7.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus7.fa -H 4  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus7.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus7.fa -H 2pIu  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus7.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus7.fa -H 2pIu  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus7.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus7.fa -H 4pIu  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus7.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus7.fa -H 4pIu  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus7.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus7.fa -H 1  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus7.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus7.fa -H 1  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus7.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus7.fa -H 3  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus7.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus7.fa -H 3  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus7.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus7.fa -H 1pIu  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus7.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus7.fa -H 1pIu  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus7.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus7.fa -H 3pIu  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus7.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus7.fa -H 3pIu  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus8.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus8.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus8.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s - -a .  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus8.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s - -a .  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus8.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s - -a . -i 'type="snp" || type="ref"'  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus8.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s - -a . -i 'type="snp" || type="ref"'  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus8.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s - -a . -i 'ALT!="<DEL>"'  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus8.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s - -a . -i 'ALT!="<DEL>"'  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus8.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s - -a . -e 'MinDP>15'  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus8.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s - -a . -e 'MinDP>15'  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus8.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s - -a . -e 'MinDP<15'  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus8.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s - -a . -e 'MinDP<15'  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.9.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.9.1.fa -H A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.9.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.9.1.fa -H A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.9.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.9.2.fa -H A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.9.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.9.2.fa -H A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.10.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.9.1.fa -H A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.10.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.9.1.fa -H A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.10.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.9.2.fa -H A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.10.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.9.2.fa -H A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.11.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.11.fa -s smpl  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.11.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.11.fa -s smpl  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.11.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.11.fa -s smpl -a N  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.11.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.11.fa -s smpl -a N  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.12.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.12.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.12.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.12.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.13.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.13.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.13.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.13.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.14.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.14.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.14.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.14.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.12.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.12.fa -s - --mark-del - --mark-ins uc --mark-snv uc  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.12.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.12.fa -s - --mark-del - --mark-ins uc --mark-snv uc  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.12.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.12.fa -s - --mark-del - --mark-ins + --mark-snv :  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.12.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.12.fa -s - --mark-del - --mark-ins + --mark-snv :  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.15.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.15.fa -H I --mark-ins lc --mark-snv lc  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.15.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.15.fa -H I --mark-ins lc --mark-snv lc  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.16.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s - -I  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.16.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s - -I  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.16.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -H I  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.16.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -H I  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.17.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus2.fa -s - -M N -m /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.17.bed 
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.17.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus2.fa -s - -M N -m /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.17.bed 
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.18.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.18.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.18.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.18.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.19.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.19.fa -s -   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.19.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.19.fa -s -   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.20.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.20.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.20.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.20.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.20.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.20.fa   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.20.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.20.fa   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.20.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.20.fa -M . -s b  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.20.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.20.fa -M . -s b  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.20.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.20.fa -M . -s a  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.20.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.20.fa -M . -s a  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.20.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.20.fa -M . -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.20.b.txt  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.20.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.20.fa -M . -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.20.b.txt  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.20.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.20.fa -M . -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.20.a.txt  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.20.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.20.fa -M . -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.20.a.txt  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.21.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.21.fa   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.21.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.21.fa   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.22.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.22.fa --regions-overlap 0 --mark-del .  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.22.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.22.fa --regions-overlap 0 --mark-del .  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.22.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.22.fa --regions-overlap 1 --mark-del .  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.22.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.22.fa --regions-overlap 1 --mark-del .  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.22.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.22.fa --regions-overlap 2 --mark-del .  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.22.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.22.fa --regions-overlap 2 --mark-del .  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.22.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.22.fa --regions-overlap 0  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.22.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.22.fa --regions-overlap 0  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.22.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.22.fa --regions-overlap 1  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.22.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.22.fa --regions-overlap 1  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.22.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.22.fa --regions-overlap 2  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/ckUtnuSS1e/consensus.22.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.22.fa --regions-overlap 2  
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -r 11:10-20 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/iupac.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/iupac.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -r 11:10-20 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/iupac.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/iupac.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -r17:100-102,17:102-103,17:103-104,17:104-105,17:100-105 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -r17:100-102,17:102-103,17:103-104,17:104-105,17:100-105 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -r17:100-102,17:102-103,17:103-104,17:104-105,17:100-105 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -b /tmp/ckUtnuSS1e/mpileup.bam.list --no-version | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -r17:100-102,17:102-103,17:103-104,17:104-105,17:100-105 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob -b /tmp/ckUtnuSS1e/mpileup.bam.urllist | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -r17:100-102,17:102-103,17:103-104,17:104-105,17:100-105 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -r17:100-102,17:102-103,17:103-104,17:104-105,17:100-105 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -r17:100-102,17:102-103,17:103-104,17:104-105,17:100-105 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -b /tmp/ckUtnuSS1e/mpileup.cram.list --no-version | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -r17:100-102,17:102-103,17:103-104,17:104-105,17:100-105 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob -b /tmp/ckUtnuSS1e/mpileup.cram.urllist | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -r17:100-150 -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -r17:100-150 -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -r17:100-150 -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -b /tmp/ckUtnuSS1e/mpileup.bam.list --no-version | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -r17:100-150 -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob -b /tmp/ckUtnuSS1e/mpileup.bam.urllist | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -r17:100-150 -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -r17:100-150 -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -r17:100-150 -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -b /tmp/ckUtnuSS1e/mpileup.cram.list --no-version | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -r17:100-150 -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob -b /tmp/ckUtnuSS1e/mpileup.cram.urllist | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,DV -r17:100-600 -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,DV -r17:100-600 -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,DV -r17:100-600 -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,DV -r17:100-600 -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -B --ff 0x14 -r17:1050-1060 -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -B --ff 0x14 -r17:1050-1060 -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -B --ff 0x14 -r17:1050-1060 -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -B --ff 0x14 -r17:1050-1060 -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,DPR,DV,DP4,INFO/DPR,SP,-AD -r17:100-600 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,DPR,DV,DP4,INFO/DPR,SP,-AD -r17:100-600 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,DPR,DV,DP4,INFO/DPR,SP,-AD -r17:100-600 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,DPR,DV,DP4,INFO/DPR,SP,-AD -r17:100-600 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,AD,ADF,ADR,SP,INFO/AD,INFO/ADF,INFO/ADR -r17:100-600 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,AD,ADF,ADR,SP,INFO/AD,INFO/ADF,INFO/ADR -r17:100-600 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,AD,ADF,ADR,SP,INFO/AD,INFO/ADF,INFO/ADR -r17:100-600 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,AD,ADF,ADR,SP,INFO/AD,INFO/ADF,INFO/ADR -r17:100-600 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,DV,-AD -r17:100-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,DV,-AD -r17:100-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,DV,-AD -r17:100-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,DV,-AD -r17:100-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,DV,-AD -r17:100-200,17:201-300,17:301-400,17:401-500,17:501-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,DV,-AD -r17:100-200,17:201-300,17:301-400,17:401-500,17:501-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,DV,-AD -r17:100-200,17:201-300,17:301-400,17:401-500,17:501-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,DV,-AD -r17:100-200,17:201-300,17:301-400,17:401-500,17:501-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -r17:100-150 -s HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -r17:100-150 -s HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -r17:100-150 -s HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -r17:100-150 -s HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -r17:100-150 -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -r17:100-150 -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -r17:100-150 -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -r17:100-150 -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -r17:100-150 -s ^HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -r17:100-150 -s ^HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -r17:100-150 -s ^HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -r17:100-150 -s ^HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -r17:100-150 -S ^/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -r17:100-150 -S ^/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -r17:100-150 -S ^/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -r17:100-150 -S ^/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t17:100-150 -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.9.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.sam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.sam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t17:100-150 -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.9.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.sam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.sam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.sam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t17:100-150 -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.9.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t17:100-150 -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.9.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t17:100-150 -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.9.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t17:100-150 -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.9.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t17:100-150 -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.10.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.sam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.sam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t17:100-150 -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.10.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.sam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.sam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.sam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t17:100-150 -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.10.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t17:100-150 -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.10.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t17:100-150 -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.10.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t17:100-150 -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.10.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.sam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -s HG00102 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -s HG00102 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.sam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -s HG00102 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -s HG00102 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -s HG00102 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -s HG00102 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -s ^HG99999 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -s ^HG99999 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.sam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -s ^HG99999 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -s ^HG99999 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -s ^HG99999 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -s ^HG99999 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.sam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.sam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.sam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD --indels-cns -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD --indels-cns -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.sam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD --indels-cns -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD --indels-cns -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD --indels-cns -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD --indels-cns -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD -r 11:75 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD -r 11:75 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD -r 11:75 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD -r 11:75 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD0 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD0 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD0 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD0 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD,INFO/SCR,FMT/SCR -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-SCR.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-SCR.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD,INFO/SCR,FMT/SCR -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-SCR.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-SCR.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD,INFO/SCR,FMT/SCR -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-SCR.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-SCR.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD,INFO/SCR,FMT/SCR -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-SCR.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-SCR.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t 1:100 --skip-all-set PAIRED,PROPER_PAIR,MREVERSE -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-SCR.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-filter.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t 1:100 --skip-all-set PAIRED,PROPER_PAIR,MREVERSE -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-SCR.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-filter.sam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t 1:100 --skip-any-set READ1 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-SCR.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-filter.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t 1:100 --skip-any-set READ1 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-SCR.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-filter.sam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t 1:100 --skip-all-unset READ1 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-SCR.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-filter.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t 1:100 --skip-all-unset READ1 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-SCR.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-filter.sam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t 1:100 --skip-any-unset READ1 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-SCR.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-filter.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t 1:100 --skip-any-unset READ1 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-SCR.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-filter.sam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD,INFO/NMBZ -r chr19:69-99 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/annot-NMBZ.1.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/annot-NMBZ.1.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD,INFO/NMBZ -r chr19:69-99 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/annot-NMBZ.1.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/annot-NMBZ.1.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD,INFO/NMBZ -r chr6:75 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/annot-NMBZ.2.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/annot-NMBZ.2.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD,INFO/NMBZ -r chr6:75 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/annot-NMBZ.2.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/annot-NMBZ.2.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD,INFO/NMBZ -r chr16:75 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/annot-NMBZ.3.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/annot-NMBZ.3.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/annot-NMBZ.3.2.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD,INFO/NMBZ -r chr16:75 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/annot-NMBZ.3.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/annot-NMBZ.3.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/annot-NMBZ.3.2.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.1.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.1.gff -pa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.1.vcf | grep -v ^#
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.1.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.1.gff -pa -G1 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.1.vcf | grep -v ^#
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.1.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.1.gff -pa -Ot /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.1.vcf | grep -v ^#
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.1.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.1.gff -pa -Ot -G1 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.1.vcf | grep -v ^#
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.2.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.2.gff -pa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.2.vcf | grep -v ^#
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.2.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.2.gff -pa -G1 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.2.vcf | grep -v ^#
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.2.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.2.gff -pa -Ot /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.2.vcf | grep -v ^#
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.2.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.2.gff -pa -Ot -G1 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.2.vcf | grep -v ^#
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.ismpl.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.ismpl.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.ismpl.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%SAMPLE %GT %BCSQ %TBCSQ\n]'
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.splice.issue-2543.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.splice.issue-2543.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.splice.issue-2543.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.oob-codon.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.oob-codon.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.oob-codon.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.gff3 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.chr.gff3 --unify-chr-names -,chr,- /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.2.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.2.gff --ncsq 64 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.nchr.gff -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.nchr.fa --unify-chr-names -,-,- /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.nchr.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.nchr.gff -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.ychr.fa --unify-chr-names -,-,chr /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.nchr.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.ychr.gff -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.nchr.fa --unify-chr-names -,chr,- /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.nchr.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.ychr.gff -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.ychr.fa --unify-chr-names -,chr,chr /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.nchr.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.ychr.gff -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.ychr.fa --unify-chr-names chr,chr,chr /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.ychr.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.nchr.gff -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.ychr.fa --unify-chr-names chr,-,chr /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.ychr.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.ychr.gff -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.nchr.fa --unify-chr-names chr,chr,- /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.ychr.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.nchr.gff -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.nchr.fa --unify-chr-names chr,-,- /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.ychr.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.nchr.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.ychr.gff --unify-chr-names Chromosome,chr,- /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.yychr.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000303039/ENST00000303039.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000303039/ENST00000303039.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000303039/not-a-stop.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000303039/ENST00000303039.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000303039/ENST00000303039.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000303039/not-a-stop.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000593942/ENST00000593942.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000593942/ENST00000593942.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000593942/last-codon-deletion.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000528237/ENST00000528237.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000528237/ENST00000528237.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000528237/retained-stop-incomplete-cds.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000422159 && /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENST00000422159.fa -g ENST00000422159.gff multiallelic.vcf  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%REF\t%ALT\t%GT\t%TBCSQ\n]' | ../sort-csq -q ; echo ; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENST00000422159.fa -g short.gff multiallelic.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%REF\t%ALT\t%GT\t%TBCSQ\n]' | ../sort-csq -q
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000390520/ENST00000390520.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000390520/ENST00000390520.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000390520/deletion-overlap.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000543077/ENST00000543077.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000543077/ENST00000543077.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000543077/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000543077/ENST00000543077.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000543077/ENST00000543077.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000543077/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/EMN908947 && /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f EMN908947.fa -g ribosomal-slippage.gff ribosomal-slippage.vcf --force | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/EMN908947 && /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f EMN908947.fa -g simple.gff simple.vcf | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000379416 && /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -B 3 -f ENST00000379416.fa -g ENST00000379416.gff compound.del-snp.vcf       | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -B 3 -f ENST00000379416.fa -g ENST00000379416.gff compound.ins-del.vcf       | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -B 3 -f ENST00000379416.fa -g ENST00000379416.gff compound.ins-ins.vcf       | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -B 3 -f ENST00000379416.fa -g ENST00000379416.gff compound.ins-snp.vcf       | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -B 3 -f ENST00000379416.fa -g ENST00000379416.gff single.vcf                 | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000301246/ENST00000301246.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000301246/ENST00000301246.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000301246/15bp-insert.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000295641/ENST00000295641.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000295641/ENST00000295641.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000295641/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000295641/ENST00000295641.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000295641/ENST00000295641.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000295641/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000518414-ENST00000521270/ENST00000518414-ENST00000521270.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000518414-ENST00000521270/ENST00000518414-ENST00000521270.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000518414-ENST00000521270/valgrind.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000571540/ENST00000571540.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000571540/ENST00000571540.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000571540/nmd.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000285021/ENST00000285021.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000285021/ENST00000285021.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000285021/stop-gained-inframe-indel.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000479739/ENST00000479739.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000479739/ENST00000479739.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000479739/short-cds-start-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000479739/ENST00000479739.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000479739/ENST00000479739.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000479739/short-cds-start-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000357367/ENST00000357367.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000357367/ENST00000357367.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000357367/stop-retained.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000230048/ENST00000230048.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000230048/ENST00000230048.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000230048/start-del.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000542803/ENST00000542803.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000542803/ENST00000542803.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000542803/splice-region.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000542803/ENST00000542803.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000542803/ENST00000542803.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000542803/splice-region.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/splice-acceptor-donor3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/splice-acceptor-donor3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/splice-acceptor-donor9.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/splice-acceptor-donor9.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/frame2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/frame2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/splice-acceptor-donor1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/splice-acceptor-donor1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/splice-acceptor-donor5.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/splice-acceptor-donor5.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/splice-acceptor-donor8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/splice-acceptor-donor8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/frame1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/frame1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/splice-acceptor-donor6.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/splice-acceptor-donor6.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/splice-acceptor-donor2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/splice-acceptor-donor2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/frame3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/frame3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/splice-acceptor-donor7.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/splice-acceptor-donor7.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/splice-acceptor-donor4.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/splice-acceptor-donor4.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000368801.2 && /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENST00000368801.2.fa -g ENST00000368801.2.gff alt-gencode.vcf -v 0 -C 0 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%BCSQ\n' | ../sort-csq -q
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000368801.2 && /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENST00000368801.2.fa -g ENST00000368801.2.gff alt-gencode.vcf -v 0 -C 1 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%BCSQ\n' | ../sort-csq -q
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000368801.2/ENST00000368801.2.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000368801.2/ENST00000368801.2.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000368801.2/start-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000518414/ENST00000518414.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000518414/ENST00000518414.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000518414/incorrect-inframe-del.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000382647/ENST00000382647.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000382647/ENST00000382647.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000382647/synon-splice-region-insert.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/EDUMMY0001/EDUMMY0001.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/EDUMMY0001/EDUMMY0001.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/EDUMMY0001/starts-with-1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/EDUMMY0001/EDUMMY0001.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/EDUMMY0001/EDUMMY0001.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/EDUMMY0001/starts-with-1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000000001 && /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENST00000000001.fa -g ENST00000000001.gff test.vcf -p a -Ot | grep -v ^#
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000000001 && /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENST00000000001.fa -g ENST00000000001.gff test.vcf -p a | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000400151/ENST00000400151.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000400151/ENST00000400151.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000400151/long-del.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000580206 && /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENST00000580206.fa -g ENST00000580206.gff compound.ins-snv.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENST00000580206.fa -g short.gff compound.ins-snv.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENST00000580206.fa -g ENST00000580206.gff single.ins-snv.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENST00000580206.fa -g short.gff single.ins-snv.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENST00000580206.fa -g ENST00000580206.gff compound.del-snv.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENST00000580206.fa -g short.gff compound.del-snv.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENST00000580206.fa -g short.gff single.del-snv.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENST00000580206.fa -g ENST00000580206.gff compound.del-ins.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENST00000580206.fa -g short.gff compound.del-ins.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENST00000580206.fa -g short.gff single.del-ins.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000520795/ENST00000520795.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000520795/ENST00000520795.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000520795/long-inside-del.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000520795/ENST00000520795.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000520795/ENST00000520795.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000520795/long-inside-del.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000519442/ENST00000519442.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000519442/ENST00000519442.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000519442/synon-splice-region-del.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000420190/ENST00000420190.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000420190/ENST00000420190.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000420190/abort-in-csq-push.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%REF\t%ALT\t%TBCSQ\n]\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000557788/ENST00000557788.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000557788/ENST00000557788.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000557788/long-overlap-del.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/EDUMMY0003/EDUMMY0003.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/EDUMMY0003/EDUMMY0003.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/EDUMMY0003/long-del.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENSMUST00000133836 && /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENSMUST00000133836.fa -g ENSMUST00000133836.gff filter-problem.vcf -i 'FILTER="PASS"' --phase m | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000436063/ENST00000436063.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000436063/ENST00000436063.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000436063/insert-before-utr.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000375992/ENST00000375992.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000375992/ENST00000375992.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000375992/incorrect-synon-del-not-start-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000318249.2/ENST00000318249.2.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000318249.2/ENST00000318249.2.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000318249.2/synonymous-start-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENSMUST00000121418 && /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENSMUST00000121418.fa -g ENSMUST00000121418.gff filter-problem.vcf -i 'POS!=25500' --phase m | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENSMUST00000121418 && /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENSMUST00000121418.fa -g ENSMUST00000121418.gff filter-problem.vcf -i 'POS!=25496' --phase m | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENSMUST00000121418 && /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENSMUST00000121418.fa -g ENSMUST00000121418.gff filter-problem.vcf -i 'POS!=25105' --phase m | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/EDUMMY0002/EDUMMY0002.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/EDUMMY0002/EDUMMY0002.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/EDUMMY0002/boundaries.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000269081/ENST00000269081.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000269081/ENST00000269081.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000269081/stop-gained-not-inframe-insertion.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000271583/ENST00000271583.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000271583/ENST00000271583.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000271583/splice-acceptor.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000294661/ENST00000294661.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000294661/ENST00000294661.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000294661/non-coding-boundary.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000294661/ENST00000294661.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000294661/ENST00000294661.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000294661/non-coding-boundary.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000256452/ENST00000256452.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000256452/ENST00000256452.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000256452/intron.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENSCAFT00000047742/ENSCAFT00000047742.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENSCAFT00000047742/ENSCAFT00000047742.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENSCAFT00000047742/test.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000573035-bt2212/ENST00000573035-bt2212.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000573035-bt2212/ENST00000573035-bt2212.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000573035-bt2212/complex-event.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000227471/ENST00000227471.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000227471/ENST00000227471.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000227471/insert-splice-vs-frameshift.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000373833/ENST00000373833.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000373833/ENST00000373833.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000373833/boundary-insertion.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000373833/ENST00000373833.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000373833/ENST00000373833.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000373833/boundary-insertion.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000318249/ENST00000318249.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000318249/ENST00000318249.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000318249/start-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000318249/ENST00000318249.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000318249/ENST00000318249.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000318249/start-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000624631/ENST00000624631.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000624631/ENST00000624631.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000624631/ambiguous.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000410009 && /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -b -f ENST00000410009.fa -g ENST00000410009.gff frameshift.vcf | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000410009 && /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -B 5 -f ENST00000410009.fa -g ENST00000410009.gff frameshift.vcf | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000410009 && /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -lb -f ENST00000410009.fa -g ENST00000410009.gff frameshift.vcf | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000410009/ENST00000410009.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000410009/ENST00000410009.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000410009/frameshift.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000360372/ENST00000360372.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000360372/ENST00000360372.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000360372/mnp.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000409523/ENST00000409523.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000409523/ENST00000409523.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000409523/long-overlapping-del.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000218032/ENST00000218032.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000218032/ENST00000218032.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000218032/start-lost-del.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000218032/ENST00000218032.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000218032/ENST00000218032.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000218032/start-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000218032/ENST00000218032.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000218032/ENST00000218032.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000218032/start-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000423372/ENST00000423372.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000423372/ENST00000423372.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000423372/snps.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000423372/ENST00000423372.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000423372/ENST00000423372.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000423372/snps.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000423372/ENST00000423372.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000423372/ENST00000423372.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000423372/insert3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000423372/ENST00000423372.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000423372/ENST00000423372.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000423372/insert3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000545279/ENST00000545279.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000545279/ENST00000545279.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000545279/splice-region-insert.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000420670/ENST00000420670.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000420670/ENST00000420670.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000420670/start-stop-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000420670/ENST00000420670.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000420670/ENST00000420670.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000420670/segfault.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000381157/ENST00000381157.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000381157/ENST00000381157.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000381157/haploid-diploid.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%REF\t%ALT\t%TBCSQ\n]\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000520868/ENST00000520868.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000520868/ENST00000520868.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000520868/long-deletion.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000573314/ENST00000573314.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000573314/ENST00000573314.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000573314/incorrect-insertion-overlap.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000573314/ENST00000573314.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000573314/ENST00000573314.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000573314/incorrect-insertion-overlap.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000368801/ENST00000368801.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000368801/ENST00000368801.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000368801/compound-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000448695/ENST00000448695.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000448695/ENST00000448695.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000448695/syn-and-splice-reg.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000378322/ENST00000378322.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000378322/ENST00000378322.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000378322/end-overlap-tscript.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000378322/ENST00000378322.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000378322/ENST00000378322.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000378322/end-overlap-tscript.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000329454/ENST00000329454.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000329454/ENST00000329454.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000329454/boundary-deletion.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000329454/ENST00000329454.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000329454/ENST00000329454.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000329454/boundary-deletion.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENSG00000173376/ENSG00000173376.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENSG00000173376/ENSG00000173376.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENSG00000173376/synon.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000413103/ENST00000413103.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000413103/ENST00000413103.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000413103/long-deletion.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000536784/ENST00000536784.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000536784/ENST00000536784.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000536784/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000536784/ENST00000536784.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000536784/ENST00000536784.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000536784/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000000000 && /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -p a -f ENST00000000000.fa -g ENST00000000000.gff upstream-stop.vcf  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%REF\t%ALT\t%SAMPLE\t%GT\t%TBCSQ\n]' | ../sort-csq -q
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000263103-INS/ENST00000263103-INS.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000263103-INS/ENST00000263103-INS.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000263103-INS/insertions.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_roh:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools roh /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/roh.1.vcf.gz -Or -G30 --AF-dflt 0.4| grep -v ^#
.. ok

test_roh:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools roh /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/roh.1.vcf.gz -Or -G30 --AF-file /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/roh.1.tab.gz| grep -v ^#
.. ok

test_roh:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools roh /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/roh.1.vcf.gz -Or -G30 --AF-file /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/roh.1.tab.gz --ignore-homref| grep -v ^#
.. ok

test_roh:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools roh /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/roh.1.vcf.gz     -G30 --AF-dflt 0.4 -r 1:100174876-100318245| grep -v ^#
.. ok

test_roh:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools roh /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/roh.1.vcf.gz     -G30 --AF-dflt 0.4 -r 1:100174876-100318245 --ignore-homref| grep -v ^#
.. ok

test_roh:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools roh /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/roh.1.vcf.gz     -G30 --AF-dflt 0.4 -r 1:100174876-100318245 --ignore-homref --include-noalt| grep -v ^#
.. ok

test_roh:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools roh /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/roh.1.vcf.gz     -G30 --AF-dflt 0.4 -r 1:100174876-100318245 --include-noalt| grep -v ^#
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck --keep-refs /tmp/ckUtnuSS1e/gtcheck.gvcf.a.vcf.gz -g /tmp/ckUtnuSS1e/gtcheck.gvcf.b.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck --keep-refs /tmp/ckUtnuSS1e/gtcheck.gvcf.b.vcf.gz -g /tmp/ckUtnuSS1e/gtcheck.gvcf.a.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck  /tmp/ckUtnuSS1e/gtcheck.gvcf.a.vcf.gz -g /tmp/ckUtnuSS1e/gtcheck.gvcf.b.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck  /tmp/ckUtnuSS1e/gtcheck.gvcf.b.vcf.gz -g /tmp/ckUtnuSS1e/gtcheck.gvcf.a.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 --no-HWE-prob /tmp/ckUtnuSS1e/gtcheck.1.vcf.gz -g /tmp/ckUtnuSS1e/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 /tmp/ckUtnuSS1e/gtcheck.1.vcf.gz -g /tmp/ckUtnuSS1e/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -u GT,GT /tmp/ckUtnuSS1e/gtcheck.1.vcf.gz -g /tmp/ckUtnuSS1e/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -u GT,PL /tmp/ckUtnuSS1e/gtcheck.1.vcf.gz -g /tmp/ckUtnuSS1e/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -u PL,GT /tmp/ckUtnuSS1e/gtcheck.1.vcf.gz -g /tmp/ckUtnuSS1e/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -u PL,PL /tmp/ckUtnuSS1e/gtcheck.1.vcf.gz -g /tmp/ckUtnuSS1e/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -p s1,s1 /tmp/ckUtnuSS1e/gtcheck.1.vcf.gz -g /tmp/ckUtnuSS1e/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 /tmp/ckUtnuSS1e/gtcheck.2.vcf.gz -g /tmp/ckUtnuSS1e/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0  /tmp/ckUtnuSS1e/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -p B,A,C,A,C,B,D,A,D,B,D,C,E,A,E,B,E,C,E,D /tmp/ckUtnuSS1e/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -P /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gtcheck.3.pairs /tmp/ckUtnuSS1e/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -u PL /tmp/ckUtnuSS1e/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 --n-matches 4 /tmp/ckUtnuSS1e/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO  | sort
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -s qry:E,D,C /tmp/ckUtnuSS1e/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -s qry:E,D,C -u PL /tmp/ckUtnuSS1e/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -s qry:B -s gt:D /tmp/ckUtnuSS1e/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -s qry:B -s gt:D -u PL /tmp/ckUtnuSS1e/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -s qry:B -s gt:D,C /tmp/ckUtnuSS1e/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -p B,C,B,D /tmp/ckUtnuSS1e/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -u GT,GT -H /tmp/ckUtnuSS1e/gtcheck.1.vcf.gz -g /tmp/ckUtnuSS1e/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -u GT,PL -H /tmp/ckUtnuSS1e/gtcheck.1.vcf.gz -g /tmp/ckUtnuSS1e/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -u PL,GT -H /tmp/ckUtnuSS1e/gtcheck.1.vcf.gz -g /tmp/ckUtnuSS1e/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -u PL,PL -H /tmp/ckUtnuSS1e/gtcheck.1.vcf.gz -g /tmp/ckUtnuSS1e/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -P /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gtcheck.4.pairs --distinctive-sites 3 /tmp/ckUtnuSS1e/gtcheck.4.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -P /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gtcheck.4.pairs --distinctive-sites 3,1 /tmp/ckUtnuSS1e/gtcheck.4.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -u GT -e 30 /tmp/ckUtnuSS1e/gtcheck.1.vcf.gz -g /tmp/ckUtnuSS1e/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -u GT -e 30 -p s1,s1 /tmp/ckUtnuSS1e/gtcheck.1.vcf.gz -g /tmp/ckUtnuSS1e/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -u GT -e 300 /tmp/ckUtnuSS1e/gtcheck.1.vcf.gz -g /tmp/ckUtnuSS1e/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -u PL -e 30 /tmp/ckUtnuSS1e/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck  /tmp/ckUtnuSS1e/gtcheck.ntop.vcf.gz -g /tmp/ckUtnuSS1e/gtcheck.ntop.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck --n-matches 2 /tmp/ckUtnuSS1e/gtcheck.ntop.vcf.gz -g /tmp/ckUtnuSS1e/gtcheck.ntop.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck  /tmp/ckUtnuSS1e/gtcheck.5.vcf.gz -g /tmp/ckUtnuSS1e/gtcheck.5.gts.vcf.gz | grep -v ^# | grep -v Time
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -p A,B,B,C /tmp/ckUtnuSS1e/gtcheck.6.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -t 11:33 -p A,D,A,E,D,E -u GT -e 10 /tmp/ckUtnuSS1e/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +vcf2table /tmp/ckUtnuSS1e/merge.4.b.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +vcf2table /tmp/ckUtnuSS1e/merge.4.b.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +vcf2table /tmp/ckUtnuSS1e/split-vep.2.vcf.gz  -- --hide 'INFO,URL' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +vcf2table /tmp/ckUtnuSS1e/split-vep.2.bcf  -- --hide 'INFO,URL' | grep -v ^##bcftools_
.. ok


Number of tests:
    total   .. 2483
    passed  .. 2483
    failed  .. 0

+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: bcftools-1.24-2.fc46.x86_64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.CHbTRg
+ umask 022
+ cd /builddir/build/BUILD/bcftools-1.24-build
+ cd bcftools-1.24
+ DOCDIR=/builddir/build/BUILD/bcftools-1.24-build/BUILDROOT/usr/share/doc/bcftools
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT/usr/share/doc/bcftools
+ cp -pr /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/AUTHORS /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT/usr/share/doc/bcftools
+ cp -pr /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/NEWS /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT/usr/share/doc/bcftools
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.wdsHhq
+ umask 022
+ cd /builddir/build/BUILD/bcftools-1.24-build
+ cd bcftools-1.24
+ LICENSEDIR=/builddir/build/BUILD/bcftools-1.24-build/BUILDROOT/usr/share/licenses/bcftools
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT/usr/share/licenses/bcftools
+ cp -pr /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/LICENSE /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT/usr/share/licenses/bcftools
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: bcftools = 1.24-2.fc46 bcftools(x86-64) = 1.24-2.fc46
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/perl /usr/bin/python3 libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgsl.so.28()(64bit) libgslcblas.so.0()(64bit) libhts.so.3()(64bit) libhts.so.3(HTSLIB_1.0)(64bit) libhts.so.3(HTSLIB_1.1)(64bit) libhts.so.3(HTSLIB_1.10)(64bit) libhts.so.3(HTSLIB_1.13)(64bit) libhts.so.3(HTSLIB_1.16)(64bit) libhts.so.3(HTSLIB_1.17)(64bit) libhts.so.3(HTSLIB_1.2.1)(64bit) libhts.so.3(HTSLIB_1.22)(64bit) libhts.so.3(HTSLIB_1.24)(64bit) libhts.so.3(HTSLIB_1.3)(64bit) libhts.so.3(HTSLIB_1.4)(64bit) libhts.so.3(HTSLIB_1.5)(64bit) libhts.so.3(HTSLIB_1.6)(64bit) libhts.so.3(HTSLIB_1.7)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.23)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.43)(64bit) libperl.so.5.44()(64bit) rtld(GNU_HASH)
Conflicts: samtools < 1.0
Processing files: bcftools-debugsource-1.24-2.fc46.x86_64
Provides: bcftools-debugsource = 1.24-2.fc46 bcftools-debugsource(x86-64) = 1.24-2.fc46
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: bcftools-debuginfo-1.24-2.fc46.x86_64
Provides: bcftools-debuginfo = 1.24-2.fc46 bcftools-debuginfo(x86-64) = 1.24-2.fc46 debuginfo(build-id) = 00cd8b111dd6acf2eb1c93db1ddb9674b7cc0f8f debuginfo(build-id) = 037605e03a5bd1f48057a93cf4cfaf2c09b67cd7 debuginfo(build-id) = 0dfe080151edf8b2a31f875309a6b817a5aa80ac debuginfo(build-id) = 0ee871373c9cb93f5088af72ecaffe94f1540e56 debuginfo(build-id) = 135cc7513b702666de723bf9126eb6f969268a3a debuginfo(build-id) = 14c9dd5b1d7b431a78f8bafa492475bfec17a21f debuginfo(build-id) = 1b511222ce4857b71c2e37a413d40f50a18d4c39 debuginfo(build-id) = 26142cf9afbe80d9d950f038eda4c81a6bb2011b debuginfo(build-id) = 2cb96a03af54997e4ec974c8013b0951f2b31add debuginfo(build-id) = 30ef09780a4112bc4368db3628176763a3d7f62a debuginfo(build-id) = 3c34e3930e47b98d67cd8fc837cdc3a6bfe61b70 debuginfo(build-id) = 43b63291223ab053130738f84de2b4a561db325c debuginfo(build-id) = 4a589053c046acf627fb3e22034369b5ebd1fb58 debuginfo(build-id) = 55c66d6d3403b7e3142d4f676638d23d45649735 debuginfo(build-id) = 59fe9173802886c03bfc410bfb15907cc4858fce debuginfo(build-id) = 60a3b9e031a29db3341559360e130e587bc26c7a debuginfo(build-id) = 63277b5734753cc92103c22ea3c3538688783dcf debuginfo(build-id) = 6a633dfed981cd8d29b2c017bb0e5b5fbcf88dff debuginfo(build-id) = 6e225dbdfd267028858b523991fa4505f35b74cc debuginfo(build-id) = 78ad5cc1def840700973921e8fca81c1df182a79 debuginfo(build-id) = 7b02e31e7b187d1eb481f709692e42418d08a4af debuginfo(build-id) = 7f91878fa16096b2eca1f779e31787d2aacd909b debuginfo(build-id) = 819e049ff8584e134cfcaf72c3d16d962aaed774 debuginfo(build-id) = 8cbb8e84eeaa9c6b78c286d0bbf5c32b9e983098 debuginfo(build-id) = 8d76bf70e21b54ec19d59c18161391918ada86e2 debuginfo(build-id) = 937c3e041da3fb3f17c014269eb4fbead92e25f8 debuginfo(build-id) = 9c3ca15f71c5cc18bcd6e698f76fa12db180e30f debuginfo(build-id) = a2b7dc40449e80a5a7ca9401129bd7f5eeb44786 debuginfo(build-id) = af65310b3e83b0cb9a89598918ceabe699599abc debuginfo(build-id) = b2e5a3911322f3ef4eaeb2f4633c03a7491909d3 debuginfo(build-id) = b554a62809e7faa8cc46f96c3ac08332d3a6f1d2 debuginfo(build-id) = cdc38c77bcbacb0fa8c8fd6cfd85b0a680dbbb45 debuginfo(build-id) = d39529c932f73a829e5cb32e58c32db6e095260a debuginfo(build-id) = d69ad8a0275df725e0a99e582b976932f03453e9 debuginfo(build-id) = e4cba1c44a7ee2171651e9601aeb430848e1df5a debuginfo(build-id) = e75e612c1bd132a6905cc2655bcfa3a6c3223d00 debuginfo(build-id) = f473a673b0643c7e5dc4e129a6ddf9d8f5566de4 debuginfo(build-id) = f795253be2c70b81d2adbbbee572776ba0523ce7 debuginfo(build-id) = f81f3786452bcfdb2b008149536845a13061f192 debuginfo(build-id) = f8d04c95957de1989209407e95a0e9fb1e1651f4 debuginfo(build-id) = fb707dcc94e945b8dd158700364fd8fe648902bf debuginfo(build-id) = ff1251d1587e373e0bc12a3dd6a148a527c2003e
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: bcftools-debugsource(x86-64) = 1.24-2.fc46
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT
Wrote: /builddir/build/RPMS/bcftools-1.24-2.fc46.x86_64.rpm
Wrote: /builddir/build/RPMS/bcftools-debugsource-1.24-2.fc46.x86_64.rpm
Wrote: /builddir/build/RPMS/bcftools-debuginfo-1.24-2.fc46.x86_64.rpm
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.79S5c3
+ umask 022
+ cd /builddir/build/BUILD/bcftools-1.24-build
+ test -d /builddir/build/BUILD/bcftools-1.24-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/bcftools-1.24-build
+ rm -rf /builddir/build/BUILD/bcftools-1.24-build
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild bcftools-1.24-2.fc46.src.rpm
Finish: build phase for bcftools-1.24-2.fc46.src.rpm
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-x86_64-1790841583.496476/root/var/log/dnf5.log
INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz
/bin/tar: Removing leading `/' from member names
INFO: Done(/var/lib/copr-rpmbuild/results/bcftools-1.24-2.fc46.src.rpm) Config(child) 1 minutes 7 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool
Package info:
{
    "packages": [
        {
            "name": "bcftools-debuginfo",
            "epoch": null,
            "version": "1.24",
            "release": "2.fc46",
            "arch": "x86_64"
        },
        {
            "name": "bcftools",
            "epoch": null,
            "version": "1.24",
            "release": "2.fc46",
            "arch": "src"
        },
        {
            "name": "bcftools-debugsource",
            "epoch": null,
            "version": "1.24",
            "release": "2.fc46",
            "arch": "x86_64"
        },
        {
            "name": "bcftools",
            "epoch": null,
            "version": "1.24",
            "release": "2.fc46",
            "arch": "x86_64"
        }
    ]
}
RPMResults finished