Mock Version: 4.1 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/rdkit.spec'], chrootPath='/var/lib/mock/fedora-38-x86_64-1688587310.077043/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1001gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.j1o813qc:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.j1o813qc:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'ea749391bc6c4bc9a0c5d27609a60306', '-D', '/var/lib/mock/fedora-38-x86_64-1688587310.077043/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.j1o813qc:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/rdkit.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1688342400 Wrote: /builddir/build/SRPMS/rdkit-2023.03.2-1.fc38.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/rdkit.spec'], chrootPath='/var/lib/mock/fedora-38-x86_64-1688587310.077043/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1001gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.j1o813qc:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.j1o813qc:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '16964f24de4844b2b51fcdc82fcf2ae1', '-D', '/var/lib/mock/fedora-38-x86_64-1688587310.077043/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.j1o813qc:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/rdkit.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1688342400 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.jFYS3m + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf rdkit-Release_2023_03_2 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/rdkit-Release_2023_03_2.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd rdkit-Release_2023_03_2 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . ++ find ./ -name '*.py' + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/utils/test_list.py ./rdkit/utils/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/utils/spiral.py ./rdkit/utils/spiral.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/utils/listutils.py ./rdkit/utils/listutils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/utils/fileutils.py ./rdkit/utils/fileutils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/utils/comhack.py ./rdkit/utils/comhack.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/utils/chemutils.py ./rdkit/utils/chemutils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/utils/chemdraw_qax.py ./rdkit/utils/chemdraw_qax.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/utils/chemdraw.py ./rdkit/utils/chemdraw.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/utils/cactvs.py ./rdkit/utils/cactvs.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/utils/__init__.py ./rdkit/utils/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/utils/UnitTestUtils.py ./rdkit/utils/UnitTestUtils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/test_list.py ./rdkit/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/utils.py ./rdkit/sping/utils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/util/__init__.py ./rdkit/sping/util/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/util/HTMLPiddler.py ./rdkit/sping/util/HTMLPiddler.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/tests/testallps.py ./rdkit/sping/tests/testallps.py: updating + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/tests/test_list.py ./rdkit/sping/tests/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/tests/pstests.py ./rdkit/sping/tests/pstests.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/tests/pidtest.py ./rdkit/sping/tests/pidtest.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/tests/__init__.py ./rdkit/sping/tests/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/test_list.py ./rdkit/sping/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/stringformat.py ./rdkit/sping/stringformat.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/pid.py ./rdkit/sping/pid.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/pagesizes.py ./rdkit/sping/pagesizes.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/examples/tkCanvasPIL-with-scrollbars.py ./rdkit/sping/examples/tkCanvasPIL-with-scrollbars.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/examples/tkCanvas-with-scrollbars.py ./rdkit/sping/examples/tkCanvas-with-scrollbars.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/examples/formatted-strings.py ./rdkit/sping/examples/formatted-strings.py: updating + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/colors.py ./rdkit/sping/colors.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/__init__.py ./rdkit/sping/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/WX/pidWxDc.py ./rdkit/sping/WX/pidWxDc.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/WX/pidWX.py ./rdkit/sping/WX/pidWX.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/WX/__init__.py ./rdkit/sping/WX/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/TK/pidTK.py ./rdkit/sping/TK/pidTK.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/TK/__init__.py ./rdkit/sping/TK/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/SVG/pidSVG.py ./rdkit/sping/SVG/pidSVG.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/SVG/__init__.py ./rdkit/sping/SVG/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/ReportLab/pidReportLab.py ./rdkit/sping/ReportLab/pidReportLab.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/ReportLab/__init__.py ./rdkit/sping/ReportLab/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/Qt/pidQt4.py ./rdkit/sping/Qt/pidQt4.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/Qt/pidQt.py ./rdkit/sping/Qt/pidQt.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/Qt/__init__.py ./rdkit/sping/Qt/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/Pyart/pidPyart.py ./rdkit/sping/Pyart/pidPyart.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/Pyart/__init__.py ./rdkit/sping/Pyart/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/Pyart/Fontmapping.py ./rdkit/sping/Pyart/Fontmapping.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/PS/psmetrics.py ./rdkit/sping/PS/psmetrics.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/PS/pidPS.py ./rdkit/sping/PS/pidPS.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/PS/latin1MetricsCache.py ./rdkit/sping/PS/latin1MetricsCache.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/PS/fontinfo.py ./rdkit/sping/PS/fontinfo.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/PS/__init__.py ./rdkit/sping/PS/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/PIL/pilfonts/removemedium.py ./rdkit/sping/PIL/pilfonts/removemedium.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/PIL/pidPIL.py ./rdkit/sping/PIL/pidPIL.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/PIL/__init__.py ./rdkit/sping/PIL/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/PDF/pidPDF.py ./rdkit/sping/PDF/pidPDF.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/PDF/pdfutils.py ./rdkit/sping/PDF/pdfutils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/PDF/pdfmetrics.py ./rdkit/sping/PDF/pdfmetrics.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/PDF/pdfgeom.py ./rdkit/sping/PDF/pdfgeom.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/PDF/pdfgen.py ./rdkit/sping/PDF/pdfgen.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/PDF/pdfdoc.py ./rdkit/sping/PDF/pdfdoc.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/PDF/__init__.py ./rdkit/sping/PDF/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/six.py ./rdkit/six.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/__init__.py ./rdkit/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/test_list.py ./rdkit/VLib/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/__init__.py ./rdkit/VLib/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/UnitTestVLib.py ./rdkit/VLib/UnitTestVLib.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/Transform.py ./rdkit/VLib/Transform.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/Supply.py ./rdkit/VLib/Supply.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/Output.py ./rdkit/VLib/Output.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/NodeLib/test_list.py ./rdkit/VLib/NodeLib/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/NodeLib/demo.py ./rdkit/VLib/NodeLib/demo.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/NodeLib/__init__.py ./rdkit/VLib/NodeLib/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/NodeLib/UnitTestNodeLib.py ./rdkit/VLib/NodeLib/UnitTestNodeLib.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/NodeLib/SmilesSupply.py ./rdkit/VLib/NodeLib/SmilesSupply.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/NodeLib/SmilesOutput.py ./rdkit/VLib/NodeLib/SmilesOutput.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/NodeLib/SmilesDupeFilter.py ./rdkit/VLib/NodeLib/SmilesDupeFilter.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/NodeLib/SmartsRemover.py ./rdkit/VLib/NodeLib/SmartsRemover.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/NodeLib/SmartsMolFilter.py ./rdkit/VLib/NodeLib/SmartsMolFilter.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/NodeLib/SDSupply.py ./rdkit/VLib/NodeLib/SDSupply.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/NodeLib/DbPickleSupplier.py ./rdkit/VLib/NodeLib/DbPickleSupplier.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/NodeLib/DbMolSupply.py ./rdkit/VLib/NodeLib/DbMolSupply.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/Node.py ./rdkit/VLib/Node.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/Filter.py ./rdkit/VLib/Filter.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/UnitTestLogging.py ./rdkit/UnitTestLogging.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/TestRunner.py ./rdkit/TestRunner.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/SimDivFilters/test_list.py ./rdkit/SimDivFilters/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/SimDivFilters/test_data/genfps.py ./rdkit/SimDivFilters/test_data/genfps.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/SimDivFilters/__init__.py ./rdkit/SimDivFilters/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/SimDivFilters/UnitTestSimilarityPickers.py ./rdkit/SimDivFilters/UnitTestSimilarityPickers.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/SimDivFilters/SimilarityPickers.py ./rdkit/SimDivFilters/SimilarityPickers.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/RDRandom.py ./rdkit/RDRandom.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/RDLogger.py ./rdkit/RDLogger.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/RDConfig.py ./rdkit/RDConfig.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Numerics/__init__.py ./rdkit/Numerics/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/test_list.py ./rdkit/ML/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/test_data/populate.py ./rdkit/ML/test_data/populate.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/files.py ./rdkit/ML/files.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/__init__.py ./rdkit/ML/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/UnitTestScreenComposite.py ./rdkit/ML/UnitTestScreenComposite.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/UnitTestBuildComposite.py ./rdkit/ML/UnitTestBuildComposite.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/UnitTestAnalyzeComposite.py ./rdkit/ML/UnitTestAnalyzeComposite.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/ScreenComposite.py ./rdkit/ML/ScreenComposite.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Scoring/test_list.py ./rdkit/ML/Scoring/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Scoring/__init__.py ./rdkit/ML/Scoring/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Scoring/UnitTestScoring.py ./rdkit/ML/Scoring/UnitTestScoring.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Scoring/Scoring.py ./rdkit/ML/Scoring/Scoring.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/SLT/test_list.py ./rdkit/ML/SLT/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/SLT/__init__.py ./rdkit/ML/SLT/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/SLT/UnitTestRisk.py ./rdkit/ML/SLT/UnitTestRisk.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/SLT/Risk.py ./rdkit/ML/SLT/Risk.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Neural/test_list.py ./rdkit/ML/Neural/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Neural/__init__.py ./rdkit/ML/Neural/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Neural/UnitTestTrainer.py ./rdkit/ML/Neural/UnitTestTrainer.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Neural/UnitTestOther.py ./rdkit/ML/Neural/UnitTestOther.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Neural/Trainers.py ./rdkit/ML/Neural/Trainers.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Neural/Network.py ./rdkit/ML/Neural/Network.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Neural/NetNode.py ./rdkit/ML/Neural/NetNode.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Neural/CrossValidate.py ./rdkit/ML/Neural/CrossValidate.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Neural/ActFuncs.py ./rdkit/ML/Neural/ActFuncs.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/NaiveBayes/test_list.py ./rdkit/ML/NaiveBayes/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/NaiveBayes/__init__.py ./rdkit/ML/NaiveBayes/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/NaiveBayes/UnitTestNB.py ./rdkit/ML/NaiveBayes/UnitTestNB.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/NaiveBayes/CrossValidate.py ./rdkit/ML/NaiveBayes/CrossValidate.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/NaiveBayes/ClassificationModel.py ./rdkit/ML/NaiveBayes/ClassificationModel.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/ModelPackage/test_list.py ./rdkit/ML/ModelPackage/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/ModelPackage/__init__.py ./rdkit/ML/ModelPackage/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/ModelPackage/UnitTestPackage.py ./rdkit/ML/ModelPackage/UnitTestPackage.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/ModelPackage/Packager.py ./rdkit/ML/ModelPackage/Packager.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/ModelPackage/PackageUtils.py ./rdkit/ML/ModelPackage/PackageUtils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/MatOps.py ./rdkit/ML/MatOps.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/MLUtils/__init__.py ./rdkit/ML/MLUtils/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/MLUtils/VoteImg.py ./rdkit/ML/MLUtils/VoteImg.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/KNN/test_list.py ./rdkit/ML/KNN/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/KNN/__init__.py ./rdkit/ML/KNN/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/KNN/UnitTestKNN.py ./rdkit/ML/KNN/UnitTestKNN.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/KNN/KNNRegressionModel.py ./rdkit/ML/KNN/KNNRegressionModel.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/KNN/KNNModel.py ./rdkit/ML/KNN/KNNModel.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/KNN/KNNClassificationModel.py ./rdkit/ML/KNN/KNNClassificationModel.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/KNN/DistFunctions.py ./rdkit/ML/KNN/DistFunctions.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/KNN/CrossValidate.py ./rdkit/ML/KNN/CrossValidate.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/InfoTheory/test_list.py ./rdkit/ML/InfoTheory/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/InfoTheory/entropy.py ./rdkit/ML/InfoTheory/entropy.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/InfoTheory/__init__.py ./rdkit/ML/InfoTheory/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/InfoTheory/UnitTestCorrMatGen.py ./rdkit/ML/InfoTheory/UnitTestCorrMatGen.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/InfoTheory/UnitTestBitRanker.py ./rdkit/ML/InfoTheory/UnitTestBitRanker.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/InfoTheory/BitRank.py ./rdkit/ML/InfoTheory/BitRank.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/InfoTheory/BitClusterer.py ./rdkit/ML/InfoTheory/BitClusterer.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/GrowComposite.py ./rdkit/ML/GrowComposite.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/EnrichPlot.py ./rdkit/ML/EnrichPlot.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Descriptors/test_list.py ./rdkit/ML/Descriptors/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Descriptors/__init__.py ./rdkit/ML/Descriptors/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Descriptors/UnitTestParser.py ./rdkit/ML/Descriptors/UnitTestParser.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Descriptors/UnitTestMolDescriptors.py ./rdkit/ML/Descriptors/UnitTestMolDescriptors.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Descriptors/UnitTestDescriptors.py ./rdkit/ML/Descriptors/UnitTestDescriptors.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Descriptors/UnitTestCOMServer.py ./rdkit/ML/Descriptors/UnitTestCOMServer.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Descriptors/Parser.py ./rdkit/ML/Descriptors/Parser.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Descriptors/MoleculeDescriptors.py ./rdkit/ML/Descriptors/MoleculeDescriptors.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Descriptors/Descriptors.py ./rdkit/ML/Descriptors/Descriptors.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Descriptors/CompoundDescriptors.py ./rdkit/ML/Descriptors/CompoundDescriptors.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/test_list.py ./rdkit/ML/DecTree/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/randomtest.py ./rdkit/ML/DecTree/randomtest.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/__init__.py ./rdkit/ML/DecTree/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/UnitTestXVal.py ./rdkit/ML/DecTree/UnitTestXVal.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/UnitTestTreeUtils.py ./rdkit/ML/DecTree/UnitTestTreeUtils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/UnitTestTree.py ./rdkit/ML/DecTree/UnitTestTree.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/UnitTestSigTree.py ./rdkit/ML/DecTree/UnitTestSigTree.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/UnitTestQuantTree.py ./rdkit/ML/DecTree/UnitTestQuantTree.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/UnitTestPrune.py ./rdkit/ML/DecTree/UnitTestPrune.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/UnitTestID3.py ./rdkit/ML/DecTree/UnitTestID3.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/TreeVis.py ./rdkit/ML/DecTree/TreeVis.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/TreeUtils.py ./rdkit/ML/DecTree/TreeUtils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/Tree.py ./rdkit/ML/DecTree/Tree.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/SigTree.py ./rdkit/ML/DecTree/SigTree.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/QuantTree.py ./rdkit/ML/DecTree/QuantTree.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/PruneTree.py ./rdkit/ML/DecTree/PruneTree.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/ID3.py ./rdkit/ML/DecTree/ID3.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/Forest.py ./rdkit/ML/DecTree/Forest.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/DecTree.py ./rdkit/ML/DecTree/DecTree.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/CrossValidate.py ./rdkit/ML/DecTree/CrossValidate.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/BuildSigTree.py ./rdkit/ML/DecTree/BuildSigTree.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/BuildQuantTree.py ./rdkit/ML/DecTree/BuildQuantTree.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Data/test_list.py ./rdkit/ML/Data/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Data/test_data/populate.py ./rdkit/ML/Data/test_data/populate.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Data/__init__.py ./rdkit/ML/Data/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Data/UnitTestStats.py ./rdkit/ML/Data/UnitTestStats.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Data/UnitTestQuantize.py ./rdkit/ML/Data/UnitTestQuantize.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Data/UnitTestMLData.py ./rdkit/ML/Data/UnitTestMLData.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Data/UnitTestFilter.py ./rdkit/ML/Data/UnitTestFilter.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Data/UnitTestDoctests.py ./rdkit/ML/Data/UnitTestDoctests.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Data/Transforms.py ./rdkit/ML/Data/Transforms.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Data/Stats.py ./rdkit/ML/Data/Stats.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Data/SplitData.py ./rdkit/ML/Data/SplitData.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Data/Quantize.py ./rdkit/ML/Data/Quantize.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Data/MLData.py ./rdkit/ML/Data/MLData.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Data/FindQuantBounds.py ./rdkit/ML/Data/FindQuantBounds.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Data/DataUtils.py ./rdkit/ML/Data/DataUtils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/CompositeRun.py ./rdkit/ML/CompositeRun.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Composite/test_list.py ./rdkit/ML/Composite/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Composite/__init__.py ./rdkit/ML/Composite/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Composite/UnitTestComposite.py ./rdkit/ML/Composite/UnitTestComposite.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Composite/UnitTestCOMServer.py ./rdkit/ML/Composite/UnitTestCOMServer.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Composite/Composite.py ./rdkit/ML/Composite/Composite.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Composite/BayesComposite.py ./rdkit/ML/Composite/BayesComposite.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Composite/AdjustComposite.py ./rdkit/ML/Composite/AdjustComposite.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Cluster/test_list.py ./rdkit/ML/Cluster/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Cluster/murtagh_test.py ./rdkit/ML/Cluster/murtagh_test.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Cluster/__init__.py ./rdkit/ML/Cluster/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Cluster/UnitTestCluster.py ./rdkit/ML/Cluster/UnitTestCluster.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Cluster/UnitTestButina.py ./rdkit/ML/Cluster/UnitTestButina.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Cluster/Standardize.py ./rdkit/ML/Cluster/Standardize.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Cluster/Resemblance.py ./rdkit/ML/Cluster/Resemblance.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Cluster/Murtagh.py ./rdkit/ML/Cluster/Murtagh.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Cluster/Clusters.py ./rdkit/ML/Cluster/Clusters.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Cluster/ClusterVis.py ./rdkit/ML/Cluster/ClusterVis.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Cluster/ClusterUtils.py ./rdkit/ML/Cluster/ClusterUtils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Cluster/Butina.py ./rdkit/ML/Cluster/Butina.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/BuildComposite.py ./rdkit/ML/BuildComposite.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/AnalyzeComposite.py ./rdkit/ML/AnalyzeComposite.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Geometry/__init__.py ./rdkit/Geometry/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ForceField/__init__.py ./rdkit/ForceField/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/DistanceGeometry/__init__.py ./rdkit/DistanceGeometry/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Dbase/test_list.py ./rdkit/Dbase/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Dbase/__init__.py ./rdkit/Dbase/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Dbase/UnitTestStorageUtils.py ./rdkit/Dbase/UnitTestStorageUtils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Dbase/UnitTestDbUtils.py ./rdkit/Dbase/UnitTestDbUtils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Dbase/UnitTestDbResultSet.py ./rdkit/Dbase/UnitTestDbResultSet.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Dbase/UnitTestDbInfo.py ./rdkit/Dbase/UnitTestDbInfo.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Dbase/UnitTestDbConnect.py ./rdkit/Dbase/UnitTestDbConnect.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Dbase/StorageUtils.py ./rdkit/Dbase/StorageUtils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Dbase/DbUtils.py ./rdkit/Dbase/DbUtils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Dbase/DbResultSet.py ./rdkit/Dbase/DbResultSet.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Dbase/DbReport.py ./rdkit/Dbase/DbReport.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Dbase/DbModule.py ./rdkit/Dbase/DbModule.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Dbase/DbInfo.py ./rdkit/Dbase/DbInfo.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Dbase/DbConnection.py ./rdkit/Dbase/DbConnection.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/DataStructs/test_list.py ./rdkit/DataStructs/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/DataStructs/__init__.py ./rdkit/DataStructs/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/DataStructs/VectCollection.py ./rdkit/DataStructs/VectCollection.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/DataStructs/UnitTestcBitVect.py ./rdkit/DataStructs/UnitTestcBitVect.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/DataStructs/UnitTestTopNContainer.py ./rdkit/DataStructs/UnitTestTopNContainer.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/DataStructs/UnitTestDocTests.py ./rdkit/DataStructs/UnitTestDocTests.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/DataStructs/UnitTestBitEnsemble.py ./rdkit/DataStructs/UnitTestBitEnsemble.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/DataStructs/TopNContainer.py ./rdkit/DataStructs/TopNContainer.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/DataStructs/LazySignature.py ./rdkit/DataStructs/LazySignature.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/DataStructs/HierarchyVis.py ./rdkit/DataStructs/HierarchyVis.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/DataStructs/BitUtils.py ./rdkit/DataStructs/BitUtils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/DataStructs/BitEnsembleDb.py ./rdkit/DataStructs/BitEnsembleDb.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/DataStructs/BitEnsemble.py ./rdkit/DataStructs/BitEnsemble.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/DataManip/__init__.py ./rdkit/DataManip/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/DataManip/Metric/__init__.py ./rdkit/DataManip/Metric/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/test_list.py ./rdkit/Chem/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/test_data/BuildDescrsTestSet.py ./rdkit/Chem/test_data/BuildDescrsTestSet.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/test_data/BuildDescrsTestSet.Crippen.py ./rdkit/Chem/test_data/BuildDescrsTestSet.Crippen.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/test_data/BuildCrippenTestSet.py ./rdkit/Chem/test_data/BuildCrippenTestSet.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/fmcs/fmcs.py ./rdkit/Chem/fmcs/fmcs.py: updating + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/fmcs/__init__.py ./rdkit/Chem/fmcs/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/__init__.py ./rdkit/Chem/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestSurf.py ./rdkit/Chem/UnitTestSurf.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestSuppliers.py ./rdkit/Chem/UnitTestSuppliers.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestSmiles.py ./rdkit/Chem/UnitTestSmiles.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestSaltRemover.py ./rdkit/Chem/UnitTestSaltRemover.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestSATIS.py ./rdkit/Chem/UnitTestSATIS.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestRegistrationHash.py ./rdkit/Chem/UnitTestRegistrationHash.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestQED.py ./rdkit/Chem/UnitTestQED.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestPandasTools.py ./rdkit/Chem/UnitTestPandasTools.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestOldBugs.py ./rdkit/Chem/UnitTestOldBugs.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestMol3D.py ./rdkit/Chem/UnitTestMol3D.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestMCS.py ./rdkit/Chem/UnitTestMCS.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestLipinski.py ./rdkit/Chem/UnitTestLipinski.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestInchi.py ./rdkit/Chem/UnitTestInchi.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestGraphDescriptors_2.py ./rdkit/Chem/UnitTestGraphDescriptors_2.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestFunctionalGroups.py ./rdkit/Chem/UnitTestFunctionalGroups.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestFragmentDescriptors.py ./rdkit/Chem/UnitTestFragmentDescriptors.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestFeatFinderCLI.py ./rdkit/Chem/UnitTestFeatFinderCLI.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestEnumerateHeterocycles.py ./rdkit/Chem/UnitTestEnumerateHeterocycles.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestDocTestsChem.py ./rdkit/Chem/UnitTestDocTestsChem.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestDescriptors.py ./rdkit/Chem/UnitTestDescriptors.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestCrippen.py ./rdkit/Chem/UnitTestCrippen.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestChemv2.py ./rdkit/Chem/UnitTestChemv2.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestChemSmarts.py ./rdkit/Chem/UnitTestChemSmarts.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestChemBond.py ./rdkit/Chem/UnitTestChemBond.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestChemAtom.py ./rdkit/Chem/UnitTestChemAtom.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestChem.py ./rdkit/Chem/UnitTestChem.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestCatalog.py ./rdkit/Chem/UnitTestCatalog.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/TorsionFingerprints.py ./rdkit/Chem/TorsionFingerprints.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/TemplateAlign.py ./rdkit/Chem/TemplateAlign.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Suppliers/test_list.py ./rdkit/Chem/Suppliers/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Suppliers/__init__.py ./rdkit/Chem/Suppliers/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Suppliers/UnitTestSmilesMolSupplier.py ./rdkit/Chem/Suppliers/UnitTestSmilesMolSupplier.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Suppliers/UnitTestSDMolSupplier.py ./rdkit/Chem/Suppliers/UnitTestSDMolSupplier.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Suppliers/UnitTestDbMolSupplier.py ./rdkit/Chem/Suppliers/UnitTestDbMolSupplier.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Suppliers/MolSupplier.py ./rdkit/Chem/Suppliers/MolSupplier.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Suppliers/DbMolSupplier.py ./rdkit/Chem/Suppliers/DbMolSupplier.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Subshape/test_list.py ./rdkit/Chem/Subshape/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Subshape/testCombined.py ./rdkit/Chem/Subshape/testCombined.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Subshape/__init__.py ./rdkit/Chem/Subshape/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Subshape/UnitTestSubshape.py ./rdkit/Chem/Subshape/UnitTestSubshape.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Subshape/SubshapeObjects.py ./rdkit/Chem/Subshape/SubshapeObjects.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Subshape/SubshapeBuilder.py ./rdkit/Chem/Subshape/SubshapeBuilder.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Subshape/SubshapeAligner.py ./rdkit/Chem/Subshape/SubshapeAligner.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Subshape/BuilderUtils.py ./rdkit/Chem/Subshape/BuilderUtils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/SimpleEnum/test_list.py ./rdkit/Chem/SimpleEnum/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/SimpleEnum/__init__.py ./rdkit/Chem/SimpleEnum/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/SimpleEnum/UnitTestEnumerator.py ./rdkit/Chem/SimpleEnum/UnitTestEnumerator.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/SimpleEnum/Enumerator.py ./rdkit/Chem/SimpleEnum/Enumerator.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/ShowMols.py ./rdkit/Chem/ShowMols.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Scaffolds/test_list.py ./rdkit/Chem/Scaffolds/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Scaffolds/__init__.py ./rdkit/Chem/Scaffolds/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Scaffolds/UnitTestMurckoScaffold.py ./rdkit/Chem/Scaffolds/UnitTestMurckoScaffold.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Scaffolds/MurckoScaffold.py ./rdkit/Chem/Scaffolds/MurckoScaffold.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/SaltRemover.py ./rdkit/Chem/SaltRemover.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/SATIS.py ./rdkit/Chem/SATIS.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/RegistrationHash.py ./rdkit/Chem/RegistrationHash.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/ReducedGraphs.py ./rdkit/Chem/ReducedGraphs.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Recap.py ./rdkit/Chem/Recap.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Randomize.py ./rdkit/Chem/Randomize.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/QED.py ./rdkit/Chem/QED.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/PyMol.py ./rdkit/Chem/PyMol.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/PropertyMol.py ./rdkit/Chem/PropertyMol.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm3D/test_list.py ./rdkit/Chem/Pharm3D/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm3D/__init__.py ./rdkit/Chem/Pharm3D/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm3D/UnitTestPharmacophore.py ./rdkit/Chem/Pharm3D/UnitTestPharmacophore.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm3D/UnitTestExcludedVolume.py ./rdkit/Chem/Pharm3D/UnitTestExcludedVolume.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm3D/UnitTestEmbed.py ./rdkit/Chem/Pharm3D/UnitTestEmbed.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm3D/Pharmacophore.py ./rdkit/Chem/Pharm3D/Pharmacophore.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm3D/ExcludedVolume.py ./rdkit/Chem/Pharm3D/ExcludedVolume.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm3D/EmbedLib.py ./rdkit/Chem/Pharm3D/EmbedLib.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm2D/test_list.py ./rdkit/Chem/Pharm2D/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm2D/__init__.py ./rdkit/Chem/Pharm2D/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm2D/Utils.py ./rdkit/Chem/Pharm2D/Utils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm2D/UnitTestUtils.py ./rdkit/Chem/Pharm2D/UnitTestUtils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm2D/UnitTestSignature.py ./rdkit/Chem/Pharm2D/UnitTestSignature.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm2D/UnitTestMatcher.py ./rdkit/Chem/Pharm2D/UnitTestMatcher.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm2D/UnitTestLazyGenerator.py ./rdkit/Chem/Pharm2D/UnitTestLazyGenerator.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm2D/UnitTestGobbi.py ./rdkit/Chem/Pharm2D/UnitTestGobbi.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm2D/UnitTestGenerate.py ./rdkit/Chem/Pharm2D/UnitTestGenerate.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm2D/SigFactory.py ./rdkit/Chem/Pharm2D/SigFactory.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm2D/Matcher.py ./rdkit/Chem/Pharm2D/Matcher.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm2D/LazyGenerator.py ./rdkit/Chem/Pharm2D/LazyGenerator.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm2D/Gobbi_Pharm2D.py ./rdkit/Chem/Pharm2D/Gobbi_Pharm2D.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm2D/Generate.py ./rdkit/Chem/Pharm2D/Generate.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/PandasTools.py ./rdkit/Chem/PandasTools.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/PandasPatcher.py ./rdkit/Chem/PandasPatcher.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolSurf.py ./rdkit/Chem/MolSurf.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolStandardize/validations.py ./rdkit/Chem/MolStandardize/validations.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolStandardize/validate.py ./rdkit/Chem/MolStandardize/validate.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolStandardize/utils.py ./rdkit/Chem/MolStandardize/utils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolStandardize/test_standardizer.py ./rdkit/Chem/MolStandardize/test_standardizer.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolStandardize/test_list.py ./rdkit/Chem/MolStandardize/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolStandardize/tautomer.py ./rdkit/Chem/MolStandardize/tautomer.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolStandardize/standardize.py ./rdkit/Chem/MolStandardize/standardize.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolStandardize/resonance.py ./rdkit/Chem/MolStandardize/resonance.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolStandardize/normalize.py ./rdkit/Chem/MolStandardize/normalize.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolStandardize/metal.py ./rdkit/Chem/MolStandardize/metal.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolStandardize/fragment.py ./rdkit/Chem/MolStandardize/fragment.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolStandardize/errors.py ./rdkit/Chem/MolStandardize/errors.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolStandardize/charge.py ./rdkit/Chem/MolStandardize/charge.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolStandardize/__init__.py ./rdkit/Chem/MolStandardize/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolStandardize/UnitTestMolVS.py ./rdkit/Chem/MolStandardize/UnitTestMolVS.py: updating + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolStandardize/UnitTestMolStandardize.py ./rdkit/Chem/MolStandardize/UnitTestMolStandardize.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolKey/test_list.py ./rdkit/Chem/MolKey/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolKey/__init__.py ./rdkit/Chem/MolKey/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolKey/UnitTestMolKey.py ./rdkit/Chem/MolKey/UnitTestMolKey.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolKey/MolKey.py ./rdkit/Chem/MolKey/MolKey.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolKey/InchiInfo.py ./rdkit/Chem/MolKey/InchiInfo.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolDb/__init__.py ./rdkit/Chem/MolDb/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolDb/Loader_sa.py ./rdkit/Chem/MolDb/Loader_sa.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolDb/Loader_orig.py ./rdkit/Chem/MolDb/Loader_orig.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolDb/Loader.py ./rdkit/Chem/MolDb/Loader.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolDb/FingerprintUtils.py ./rdkit/Chem/MolDb/FingerprintUtils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolCatalog.py ./rdkit/Chem/MolCatalog.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MCS.py ./rdkit/Chem/MCS.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MACCSkeys.py ./rdkit/Chem/MACCSkeys.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Lipinski.py ./rdkit/Chem/Lipinski.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Graphs.py ./rdkit/Chem/Graphs.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/GraphDescriptors.py ./rdkit/Chem/GraphDescriptors.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/FunctionalGroups.py ./rdkit/Chem/FunctionalGroups.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Fragments.py ./rdkit/Chem/Fragments.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/FragmentMatcher.py ./rdkit/Chem/FragmentMatcher.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/FragmentCatalog.py ./rdkit/Chem/FragmentCatalog.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Fraggle/test_list.py ./rdkit/Chem/Fraggle/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Fraggle/__init__.py ./rdkit/Chem/Fraggle/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Fraggle/UnitTestFraggle.py ./rdkit/Chem/Fraggle/UnitTestFraggle.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Fraggle/FraggleSim.py ./rdkit/Chem/Fraggle/FraggleSim.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Fingerprints/test_list.py ./rdkit/Chem/Fingerprints/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Fingerprints/__init__.py ./rdkit/Chem/Fingerprints/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Fingerprints/UnitTestSimScreener.py ./rdkit/Chem/Fingerprints/UnitTestSimScreener.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Fingerprints/UnitTestFingerprints.py ./rdkit/Chem/Fingerprints/UnitTestFingerprints.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Fingerprints/UnitTestDbFpSupplier.py ./rdkit/Chem/Fingerprints/UnitTestDbFpSupplier.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Fingerprints/SimilarityScreener.py ./rdkit/Chem/Fingerprints/SimilarityScreener.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Fingerprints/MolSimilarity.py ./rdkit/Chem/Fingerprints/MolSimilarity.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Fingerprints/FingerprintMols.py ./rdkit/Chem/Fingerprints/FingerprintMols.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Fingerprints/DbFpSupplier.py ./rdkit/Chem/Fingerprints/DbFpSupplier.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Fingerprints/ClusterMols.py ./rdkit/Chem/Fingerprints/ClusterMols.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/FilterCatalog.py ./rdkit/Chem/FilterCatalog.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Features/test_list.py ./rdkit/Chem/Features/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Features/__init__.py ./rdkit/Chem/Features/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Features/UnitTestFeatDirUtilsRD.py ./rdkit/Chem/Features/UnitTestFeatDirUtilsRD.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Features/ShowFeats.py ./rdkit/Chem/Features/ShowFeats.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Features/FeatDirUtilsRD.py ./rdkit/Chem/Features/FeatDirUtilsRD.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/FeatMaps/test_list.py ./rdkit/Chem/FeatMaps/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/FeatMaps/__init__.py ./rdkit/Chem/FeatMaps/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/FeatMaps/UnitTestFeatMapUtils.py ./rdkit/Chem/FeatMaps/UnitTestFeatMapUtils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/FeatMaps/UnitTestFeatMapPoint.py ./rdkit/Chem/FeatMaps/UnitTestFeatMapPoint.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/FeatMaps/UnitTestFeatMapParser.py ./rdkit/Chem/FeatMaps/UnitTestFeatMapParser.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/FeatMaps/UnitTestFeatMap.py ./rdkit/Chem/FeatMaps/UnitTestFeatMap.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/FeatMaps/FeatMaps.py ./rdkit/Chem/FeatMaps/FeatMaps.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/FeatMaps/FeatMapUtils.py ./rdkit/Chem/FeatMaps/FeatMapUtils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/FeatMaps/FeatMapPoint.py ./rdkit/Chem/FeatMaps/FeatMapPoint.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/FeatMaps/FeatMapParser.py ./rdkit/Chem/FeatMaps/FeatMapParser.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/FeatFinderCLI.py ./rdkit/Chem/FeatFinderCLI.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/FastSDMolSupplier.py ./rdkit/Chem/FastSDMolSupplier.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/EnumerateStereoisomers.py ./rdkit/Chem/EnumerateStereoisomers.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/EnumerateHeterocycles.py ./rdkit/Chem/EnumerateHeterocycles.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/EState/test_list.py ./rdkit/Chem/EState/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/EState/__init__.py ./rdkit/Chem/EState/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/EState/UnitTestVSA.py ./rdkit/Chem/EState/UnitTestVSA.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/EState/UnitTestTypes.py ./rdkit/Chem/EState/UnitTestTypes.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/EState/UnitTestFingerprints.py ./rdkit/Chem/EState/UnitTestFingerprints.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/EState/UnitTestEState.py ./rdkit/Chem/EState/UnitTestEState.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/EState/Fingerprinter.py ./rdkit/Chem/EState/Fingerprinter.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/EState/EState_VSA.py ./rdkit/Chem/EState/EState_VSA.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/EState/EState.py ./rdkit/Chem/EState/EState.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/EState/AtomTypes.py ./rdkit/Chem/EState/AtomTypes.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Draw/test_list.py ./rdkit/Chem/Draw/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Draw/spingCanvas.py ./rdkit/Chem/Draw/spingCanvas.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Draw/qtCanvas.py ./rdkit/Chem/Draw/qtCanvas.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Draw/mplCanvas.py ./rdkit/Chem/Draw/mplCanvas.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Draw/canvasbase.py ./rdkit/Chem/Draw/canvasbase.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Draw/cairoCanvas.py ./rdkit/Chem/Draw/cairoCanvas.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Draw/aggCanvas.py ./rdkit/Chem/Draw/aggCanvas.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Draw/__init__.py ./rdkit/Chem/Draw/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Draw/UnitTestSimilarityMaps.py ./rdkit/Chem/Draw/UnitTestSimilarityMaps.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Draw/UnitTestIPython.py ./rdkit/Chem/Draw/UnitTestIPython.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Draw/UnitTestDraw.py ./rdkit/Chem/Draw/UnitTestDraw.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Draw/SimilarityMaps.py ./rdkit/Chem/Draw/SimilarityMaps.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Draw/MolDrawing.py ./rdkit/Chem/Draw/MolDrawing.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Draw/InteractiveRenderer.py ./rdkit/Chem/Draw/InteractiveRenderer.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Draw/IPythonConsole.py ./rdkit/Chem/Draw/IPythonConsole.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Descriptors3D.py ./rdkit/Chem/Descriptors3D.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Descriptors.py ./rdkit/Chem/Descriptors.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/DSViewer.py ./rdkit/Chem/DSViewer.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Crippen.py ./rdkit/Chem/Crippen.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/ChemicalForceFields.py ./rdkit/Chem/ChemicalForceFields.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/ChemicalFeatures.py ./rdkit/Chem/ChemicalFeatures.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/ChemUtils/test_list.py ./rdkit/Chem/ChemUtils/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/ChemUtils/__init__.py ./rdkit/Chem/ChemUtils/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/ChemUtils/UnitTestSDFToCSV.py ./rdkit/Chem/ChemUtils/UnitTestSDFToCSV.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/ChemUtils/UnitTestAlignDepict.py ./rdkit/Chem/ChemUtils/UnitTestAlignDepict.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/ChemUtils/TemplateExpand.py ./rdkit/Chem/ChemUtils/TemplateExpand.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/ChemUtils/SDFToCSV.py ./rdkit/Chem/ChemUtils/SDFToCSV.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/ChemUtils/DescriptorUtilities.py ./rdkit/Chem/ChemUtils/DescriptorUtilities.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/ChemUtils/BulkTester.py ./rdkit/Chem/ChemUtils/BulkTester.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/ChemUtils/AlignDepict.py ./rdkit/Chem/ChemUtils/AlignDepict.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/BuildFragmentCatalog.py ./rdkit/Chem/BuildFragmentCatalog.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/BRICS.py ./rdkit/Chem/BRICS.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/AtomPairs/test_list.py ./rdkit/Chem/AtomPairs/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/AtomPairs/__init__.py ./rdkit/Chem/AtomPairs/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/AtomPairs/Utils.py ./rdkit/Chem/AtomPairs/Utils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/AtomPairs/UnitTestDescriptors.py ./rdkit/Chem/AtomPairs/UnitTestDescriptors.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/AtomPairs/Torsions.py ./rdkit/Chem/AtomPairs/Torsions.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/AtomPairs/Sheridan.py ./rdkit/Chem/AtomPairs/Sheridan.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/AtomPairs/Pairs.py ./rdkit/Chem/AtomPairs/Pairs.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/AllChem.py ./rdkit/Chem/AllChem.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Avalon/__init__.py ./rdkit/Avalon/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./build_support/pkg_version.py ./build_support/pkg_version.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Web/RDExtras/MolImage.py ./Web/RDExtras/MolImage.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Web/RDExtras/MolDepict.py ./Web/RDExtras/MolDepict.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Scripts/run_python_tests.py ./Scripts/run_python_tests.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Scripts/PythonFormat.py ./Scripts/PythonFormat.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Scripts/FeatFinderCLI.py ./Scripts/FeatFinderCLI.py: updating + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Regress/Scripts/timings.py ./Regress/Scripts/timings.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Regress/Scripts/new_timings.py ./Regress/Scripts/new_timings.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Regress/Scripts/fingerprint_screenout.py ./Regress/Scripts/fingerprint_screenout.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Regress/Scripts/chiral_embed.py ./Regress/Scripts/chiral_embed.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Projects/test_list.py ./Projects/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Projects/DbCLI/test_list.py ./Projects/DbCLI/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Projects/DbCLI/TestDbCLI.py ./Projects/DbCLI/TestDbCLI.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Projects/DbCLI/SearchDb.py ./Projects/DbCLI/SearchDb.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Projects/DbCLI/CreateDb.py ./Projects/DbCLI/CreateDb.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./External/pymol/modules/pymol/rpc.py ./External/pymol/modules/pymol/rpc.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./External/YAeHMOP/Wrap/testEHTTools.py ./External/YAeHMOP/Wrap/testEHTTools.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./External/INCHI-API/python/noinchi.py ./External/INCHI-API/python/noinchi.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./External/INCHI-API/python/inchi.py ./External/INCHI-API/python/inchi.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./External/FreeSASA/Wrap/testFreeSASA.py ./External/FreeSASA/Wrap/testFreeSASA.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./External/CoordGen/Wrap/testCoordGen.py ./External/CoordGen/Wrap/testCoordGen.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./External/AvalonTools/test_list.py ./External/AvalonTools/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./External/AvalonTools/Wrap/test_list.py ./External/AvalonTools/Wrap/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./External/AvalonTools/Wrap/testAvalonTools.py ./External/AvalonTools/Wrap/testAvalonTools.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Docs/Book_jp/conf.py ./Docs/Book_jp/conf.py: updating + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Docs/Book/exts/extapi.py ./Docs/Book/exts/extapi.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Docs/Book/data/test_multi_colours.py ./Docs/Book/data/test_multi_colours.py: updating + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Docs/Book/conf.py ./Docs/Book/conf.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Data/SmartsLib/tests/bench2.py ./Data/SmartsLib/tests/bench2.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Data/Pains/test_data/run_tests.py ./Data/Pains/test_data/run_tests.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Data/Fonts/font_dumper.py ./Data/Fonts/font_dumper.py: updating + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Data/DTDs/validate.py ./Data/DTDs/validate.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/pzc/p_con.py ./Contrib/pzc/p_con.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/mmpa/test_rfrag.py ./Contrib/mmpa/test_rfrag.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/mmpa/test_list.py ./Contrib/mmpa/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/mmpa/search_mmp_db.py ./Contrib/mmpa/search_mmp_db.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/mmpa/rfrag.py ./Contrib/mmpa/rfrag.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/mmpa/mol_transform.py ./Contrib/mmpa/mol_transform.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/mmpa/indexing.py ./Contrib/mmpa/indexing.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/mmpa/create_mmp_db.py ./Contrib/mmpa/create_mmp_db.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/mmpa/cansmirk.py ./Contrib/mmpa/cansmirk.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/fraggle/rdkit_tversky.py ./Contrib/fraggle/rdkit_tversky.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/fraggle/fraggle.py ./Contrib/fraggle/fraggle.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/fraggle/cxn_tversky.py ./Contrib/fraggle/cxn_tversky.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/fraggle/atomcontrib.py ./Contrib/fraggle/atomcontrib.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/SA_Score/sascorer.py ./Contrib/SA_Score/sascorer.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/SA_Score/UnitTestSAScore.py ./Contrib/SA_Score/UnitTestSAScore.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/RxnRoleAssignment/utils.py ./Contrib/RxnRoleAssignment/utils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/RxnRoleAssignment/identifyReactants.py ./Contrib/RxnRoleAssignment/identifyReactants.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/RxnRoleAssignment/__init__.py ./Contrib/RxnRoleAssignment/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/PBF/pbf.py ./Contrib/PBF/pbf.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/NP_Score/npscorer.py ./Contrib/NP_Score/npscorer.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/NIBRSubstructureFilters/assignSubstructureFilters.py ./Contrib/NIBRSubstructureFilters/assignSubstructureFilters.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/MolVS/molvs_cli.py ./Contrib/MolVS/molvs_cli.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/M_Kossner/Frames.py ./Contrib/M_Kossner/Frames.py: updating + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/LEF/DistancePredict.py ./Contrib/LEF/DistancePredict.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/LEF/DistancePlot.py ./Contrib/LEF/DistancePlot.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/LEF/CreateFps.py ./Contrib/LEF/CreateFps.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/LEF/ClusterFps.py ./Contrib/LEF/ClusterFps.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/LEF/AddLabels.py ./Contrib/LEF/AddLabels.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/IFG/ifg.py ./Contrib/IFG/ifg.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/Glare/glare.py ./Contrib/Glare/glare.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/FreeWilson/test/test_freewilson.py ./Contrib/FreeWilson/test/test_freewilson.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/FreeWilson/setup.py ./Contrib/FreeWilson/setup.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/FreeWilson/freewilson.py ./Contrib/FreeWilson/freewilson.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/Fastcluster/testdata/sdf2smi.py ./Contrib/Fastcluster/testdata/sdf2smi.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/Fastcluster/fastcluster.py ./Contrib/Fastcluster/fastcluster.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/ConformerParser/test_list.py ./Contrib/ConformerParser/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/ConformerParser/Wrap/test_list.py ./Contrib/ConformerParser/Wrap/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/ConformerParser/Wrap/testConformerParser.py ./Contrib/ConformerParser/Wrap/testConformerParser.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/ChiralPairs/ChiralDescriptors.py ./Contrib/ChiralPairs/ChiralDescriptors.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/CalcLigRMSD/CalcLigRMSD.py ./Contrib/CalcLigRMSD/CalcLigRMSD.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/AtomAtomSimilarity/AtomAtomPathSimilarity.py ./Contrib/AtomAtomSimilarity/AtomAtomPathSimilarity.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/cmake/Modules/fixup_coverage.py ./Code/cmake/Modules/fixup_coverage.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/SimDivPickers/Wrap/testPickers.py ./Code/SimDivPickers/Wrap/testPickers.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/SimDivPickers/Wrap/testMaxMin.py ./Code/SimDivPickers/Wrap/testMaxMin.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/Numerics/Alignment/Wrap/testAlignment.py ./Code/Numerics/Alignment/Wrap/testAlignment.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/MinimalLib/simple.py ./Code/MinimalLib/simple.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/ML/InfoTheory/Wrap/testRanker.py ./Code/ML/InfoTheory/Wrap/testRanker.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/JavaWrappers/parse_doxy_html.py ./Code/JavaWrappers/parse_doxy_html.py: updating + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/JavaWrappers/make_templates.py ./Code/JavaWrappers/make_templates.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Wrap/test_data/do_smiles.py ./Code/GraphMol/Wrap/test_data/do_smiles.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Wrap/test_data/do_smiles.bomb.py ./Code/GraphMol/Wrap/test_data/do_smiles.bomb.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Wrap/test_cdxml.py ./Code/GraphMol/Wrap/test_cdxml.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Wrap/testTrajectory.py ./Code/GraphMol/Wrap/testTrajectory.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Wrap/testThreads.py ./Code/GraphMol/Wrap/testThreads.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Wrap/testSGroups.py ./Code/GraphMol/Wrap/testSGroups.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Wrap/testPropertyLists.py ./Code/GraphMol/Wrap/testPropertyLists.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Wrap/testMultithreadedMolSupplier.py ./Code/GraphMol/Wrap/testMultithreadedMolSupplier.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Wrap/testConformer.py ./Code/GraphMol/Wrap/testConformer.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Wrap/rough_test.py ./Code/GraphMol/Wrap/rough_test.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/UnitTestQueryMol.py ./Code/GraphMol/UnitTestQueryMol.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/TautomerQuery/Wrap/rough_test.py ./Code/GraphMol/TautomerQuery/Wrap/rough_test.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/SubstructLibrary/Wrap/rough_test.py ./Code/GraphMol/SubstructLibrary/Wrap/rough_test.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Substruct/UnitTestSubstruct.py ./Code/GraphMol/Substruct/UnitTestSubstruct.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/StructChecker/Wrap/rough_test.py ./Code/GraphMol/StructChecker/Wrap/rough_test.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/ShapeHelpers/Wrap/testShapeHelpers.py ./Code/GraphMol/ShapeHelpers/Wrap/testShapeHelpers.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/ScaffoldNetwork/Wrap/testScaffoldNetwork.py ./Code/GraphMol/ScaffoldNetwork/Wrap/testScaffoldNetwork.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/ScaffoldNetwork/Wrap/testPickleScaffoldNetwork.py ./Code/GraphMol/ScaffoldNetwork/Wrap/testPickleScaffoldNetwork.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/SLNParse/Wrap/testSLN.py ./Code/GraphMol/SLNParse/Wrap/testSLN.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/ReducedGraphs/Wrap/testReducedGraphs.py ./Code/GraphMol/ReducedGraphs/Wrap/testReducedGraphs.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/RGroupDecomposition/Wrap/test_rgroups.py ./Code/GraphMol/RGroupDecomposition/Wrap/test_rgroups.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/PartialCharges/Wrap/testPartialCharges.py ./Code/GraphMol/PartialCharges/Wrap/testPartialCharges.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/MolTransforms/Wrap/testMolTransforms.py ./Code/GraphMol/MolTransforms/Wrap/testMolTransforms.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/MolStandardize/Wrap/testMolStandardize.py ./Code/GraphMol/MolStandardize/Wrap/testMolStandardize.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/MolInterchange/Wrap/testMolInterchange.py ./Code/GraphMol/MolInterchange/Wrap/testMolInterchange.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/MolHash/Wrap/testMolHash.py ./Code/GraphMol/MolHash/Wrap/testMolHash.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/MolEnumerator/Wrap/rough_test.py ./Code/GraphMol/MolEnumerator/Wrap/rough_test.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/MolDraw2D/update_hash_codes.py ./Code/GraphMol/MolDraw2D/update_hash_codes.py: updating + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/MolDraw2D/test_dir/test_rdkit_draw.py ./Code/GraphMol/MolDraw2D/test_dir/test_rdkit_draw.py: updating + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/MolDraw2D/side_by_side_images.py ./Code/GraphMol/MolDraw2D/side_by_side_images.py: updating + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/MolDraw2D/Wrap/testMolDraw2D.py ./Code/GraphMol/MolDraw2D/Wrap/testMolDraw2D.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/MolDraw2D/Qt/Wrap/testMolDraw2DQt.py ./Code/GraphMol/MolDraw2D/Qt/Wrap/testMolDraw2DQt.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/MolChemicalFeatures/Wrap/testChemicalFeatures.py ./Code/GraphMol/MolChemicalFeatures/Wrap/testChemicalFeatures.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/MolCatalog/Wrap/rough_test.py ./Code/GraphMol/MolCatalog/Wrap/rough_test.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/MolAlign/Wrap/testMolAlign.py ./Code/GraphMol/MolAlign/Wrap/testMolAlign.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/MMPA/Wrap/testMMPA.py ./Code/GraphMol/MMPA/Wrap/testMMPA.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/FragCatalog/Wrap/rough_test.py ./Code/GraphMol/FragCatalog/Wrap/rough_test.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/ForceFieldHelpers/Wrap/testHelpers.py ./Code/GraphMol/ForceFieldHelpers/Wrap/testHelpers.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Fingerprints/Wrap/testMHFP.py ./Code/GraphMol/Fingerprints/Wrap/testMHFP.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Fingerprints/Wrap/testGenerators.py ./Code/GraphMol/Fingerprints/Wrap/testGenerators.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/FilterCatalog/update_pains.py ./Code/GraphMol/FilterCatalog/update_pains.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/FilterCatalog/Wrap/rough_test.py ./Code/GraphMol/FilterCatalog/Wrap/rough_test.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/FileParsers/mol.py ./Code/GraphMol/FileParsers/mol.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/FMCS/Wrap/testFMCS.py ./Code/GraphMol/FMCS/Wrap/testFMCS.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/DistGeomHelpers/Wrap/testDistGeom.py ./Code/GraphMol/DistGeomHelpers/Wrap/testDistGeom.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/DetermineBonds/Wrap/testDetermineBonds.py ./Code/GraphMol/DetermineBonds/Wrap/testDetermineBonds.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Descriptors/test_data/pmi.py ./Code/GraphMol/Descriptors/test_data/pmi.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Descriptors/test3D_old.py ./Code/GraphMol/Descriptors/test3D_old.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Descriptors/test3D.py ./Code/GraphMol/Descriptors/test3D.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Descriptors/Wrap/testMolDescriptors.py ./Code/GraphMol/Descriptors/Wrap/testMolDescriptors.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Descriptors/Wrap/test3D.py ./Code/GraphMol/Descriptors/Wrap/test3D.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Deprotect/Wrap/rough_test.py ./Code/GraphMol/Deprotect/Wrap/rough_test.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Depictor/Wrap/testDepictor.py ./Code/GraphMol/Depictor/Wrap/testDepictor.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/ChemReactions/Wrap/testSanitize.py ./Code/GraphMol/ChemReactions/Wrap/testSanitize.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/ChemReactions/Wrap/testReactionWrapper.py ./Code/GraphMol/ChemReactions/Wrap/testReactionWrapper.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/ChemReactions/Wrap/testEnumerations.py ./Code/GraphMol/ChemReactions/Wrap/testEnumerations.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/CIPLabeler/Wrap/pyCIPLabelsValidation.py ./Code/GraphMol/CIPLabeler/Wrap/pyCIPLabelsValidation.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/CIPLabeler/Wrap/pyCIPLabelWrapTest.py ./Code/GraphMol/CIPLabeler/Wrap/pyCIPLabelWrapTest.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Abbreviations/Wrap/testAbbreviations.py ./Code/GraphMol/Abbreviations/Wrap/testAbbreviations.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/Geometry/Wrap/testGeometry.py ./Code/Geometry/Wrap/testGeometry.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/ForceField/Wrap/testConstraints.py ./Code/ForceField/Wrap/testConstraints.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/DistGeom/Wrap/rough_test.py ./Code/DistGeom/Wrap/rough_test.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/Demos/boost/smartPtrsAndIters/test.py ./Code/Demos/boost/smartPtrsAndIters/test.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/Demos/boost/smartPtrsAndIters/setup.py ./Code/Demos/boost/smartPtrsAndIters/setup.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/Demos/boost/python_objs/test.py ./Code/Demos/boost/python_objs/test.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/Demos/boost/python_objs/setup.py ./Code/Demos/boost/python_objs/setup.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/Demos/boost/overloads/test.py ./Code/Demos/boost/overloads/test.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/Demos/boost/overloads/setup.py ./Code/Demos/boost/overloads/setup.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/Demos/boost/numpy/test.py ./Code/Demos/boost/numpy/test.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/Demos/boost/numpy/setup.py ./Code/Demos/boost/numpy/setup.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/Demos/boost/cross_module/test.py ./Code/Demos/boost/cross_module/test.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/Demos/boost/cross_module/setup.py ./Code/Demos/boost/cross_module/setup.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/Demos/boost/cross_mod_err/test.py ./Code/Demos/boost/cross_mod_err/test.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/Demos/boost/cross_mod_err/setup.py ./Code/Demos/boost/cross_mod_err/setup.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/Demos/boost/EBV_err/test.py ./Code/Demos/boost/EBV_err/test.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/Demos/boost/EBV_err/setup.py ./Code/Demos/boost/EBV_err/setup.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/Demos/RDKit/MPI/rdkpympi.py ./Code/Demos/RDKit/MPI/rdkpympi.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/DataStructs/Wrap/testSparseIntVect.py ./Code/DataStructs/Wrap/testSparseIntVect.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/DataStructs/Wrap/testFPB.py ./Code/DataStructs/Wrap/testFPB.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/DataStructs/Wrap/testDiscreteValueVect.py ./Code/DataStructs/Wrap/testDiscreteValueVect.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/DataStructs/Wrap/testBV.py ./Code/DataStructs/Wrap/testBV.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/DataManip/MetricMatrixCalc/Wrap/testMatricCalc.py ./Code/DataManip/MetricMatrixCalc/Wrap/testMatricCalc.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/ChemicalFeatures/Wrap/testFeatures.py ./Code/ChemicalFeatures/Wrap/testFeatures.py: no change + cp -p Code/PgSQL/rdkit/README.md Code/PgSQL/rdkit/README_PgSQL.md + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.foFUON + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd rdkit-Release_2023_03_2 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX ++ /usr/bin/pg_server_config --includedir-server + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -D RDK_INSTALL_INTREE=OFF -D CMAKE_BUILD_TYPE=Release -D CMAKE_SKIP_RPATH:BOOL=ON -D RDK_BUILD_INCHI_SUPPORT:BOOL=ON -D RDK_BUILD_THREADSAFE_SSS:BOOL=OFF -D RDK_BUILD_CAIRO_SUPPORT:BOOL=ON -D RDK_BUILD_DESCRIPTORS3D:BOOL=OFF -D RDK_BUILD_COORDGEN_SUPPORT:BOOL=OFF -D RDK_BUILD_MOLINTERCHANGE_SUPPORT:BOOL=OFF -D RDK_OPTIMIZE_POPCNT:BOOL=OFF -D DRDK_BUILD_CPP_TESTS:BOOL=ON -D RDK_BUILD_THREADSAFE_SSS:BOOL=ON -D RDK_BUILD_PGSQL:BOOL=ON -D PostgreSQL_ROOT:PATH=/usr -D PostgreSQL_TYPE_INCLUDE_DIR:PATH=/usr/include/pgsql/server -D RDK_PGSQL_STATIC:BOOL=OFF -D RDK_INSTALL_STATIC_LIBS:BOOL=OFF -D RDK_USE_FLEXBISON:BOOL=OFF -D RDK_TEST_MULTITHREADED:BOOL=ON -D PYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3 -D RDK_BOOST_PYTHON3_NAME=python311 -D CATCH_DIR:FILEPATH=/usr/include/catch2 -D RDK_USE_URF:BOOL=OFF -D RDK_INSTALL_COMIC_FONTS:BOOL=OFF -D RDK_BUILD_SWIG_JAVA_WRAPPER:BOOL=OFF -D RDK_BUILD_SWIG_WRAPPERS=OFF CMake Warning: No source or binary directory provided. Both will be assumed to be the same as the current working directory, but note that this warning will become a fatal error in future CMake releases. -- The C compiler identification is GNU 13.1.1 -- The CXX compiler identification is GNU 13.1.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Catch2: /usr/include/catch2 CATCH: /usr/include/catch2 -- Found Inchi: /usr/lib64/libinchi.so -- Found PythonInterp: /usr/bin/python3 (found version "3.11.4") -- Found PythonLibs: /usr/lib64/libpython3.11.so (found version "3.11.4") Python Install directory /usr/lib64/python3.11/site-packages PYTHON Py_ENABLE_SHARED: 1 PYTHON USING LINK LINE: -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g nbval not found, disabling the jupyter tests -- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0") -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Found Boost: /usr/lib64/cmake/Boost-1.78.0/BoostConfig.cmake (found suitable version "1.78.0", minimum required is "1.58.0") found components: system serialization iostreams CMake Warning (dev) at CMakeLists.txt:453 (find_package): Policy CMP0074 is not set: find_package uses _ROOT variables. Run "cmake --help-policy CMP0074" for policy details. Use the cmake_policy command to set the policy and suppress this warning. CMake variable PostgreSQL_ROOT is set to: /usr For compatibility, CMake is ignoring the variable. This warning is for project developers. Use -Wno-dev to suppress it. -- Found PostgreSQL: /usr/lib64/libpq.so (found version "15.1") == Using strict rotor definition -- Found Boost: /usr/lib64/cmake/Boost-1.78.0/BoostConfig.cmake (found suitable version "1.78.0", minimum required is "1.58.0") found components: system iostreams -- maeparser include dir set as '/usr/include' -- maeparser libraries set as '/usr/lib64/libmaeparser.so' -- Found maeparser: /usr/include -- Found Boost: /usr/lib64/cmake/Boost-1.78.0/BoostConfig.cmake (found suitable version "1.78.0", minimum required is "1.58.0") found components: iostreams -- Found Boost: /usr/lib64/cmake/Boost-1.78.0/BoostConfig.cmake (found suitable version "1.78.0", minimum required is "1.58.0") found components: system iostreams -- Found ZLIB: /usr/lib64/libz.so (found version "1.2.13") -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.0") -- Found Cairo: /usr/include/cairo -- Found Freetype: /usr/lib64/libfreetype.so (found version "2.13.0") -- Found Boost: /usr/lib64/cmake/Boost-1.78.0/BoostConfig.cmake (found suitable version "1.78.0", minimum required is "1.58.0") found components: program_options CMake Warning (dev) at Code/PgSQL/rdkit/CMakeLists.txt:23 (find_package): Policy CMP0074 is not set: find_package uses _ROOT variables. Run "cmake --help-policy CMP0074" for policy details. Use the cmake_policy command to set the policy and suppress this warning. CMake variable PostgreSQL_ROOT is set to: /usr For compatibility, CMake is ignoring the variable. This warning is for project developers. Use -Wno-dev to suppress it. postgres: /usr/include;/usr/include/pgsql/server -- Configuring done (1.2s) -- Generating done (0.4s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP DRDK_BUILD_CPP_TESTS INCLUDE_INSTALL_DIR LIB_INSTALL_DIR SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/rdkit-Release_2023_03_2 + /usr/bin/cmake --build . -j2 --verbose /usr/bin/cmake -S/builddir/build/BUILD/rdkit-Release_2023_03_2 -B/builddir/build/BUILD/rdkit-Release_2023_03_2 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/rdkit-Release_2023_03_2/CMakeFiles /builddir/build/BUILD/rdkit-Release_2023_03_2//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f External/catch/CMakeFiles/catch.dir/build.make External/catch/CMakeFiles/catch.dir/depend /usr/bin/gmake -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/External/catch /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/External/catch /builddir/build/BUILD/rdkit-Release_2023_03_2/External/catch/CMakeFiles/catch.dir/DependInfo.cmake --color= gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2023_03_2/External/INCHI-API/CMakeFiles/inchi_support.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f External/catch/CMakeFiles/catch.dir/build.make External/catch/CMakeFiles/catch.dir/build gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' gmake[2]: Nothing to be done for 'External/catch/CMakeFiles/catch.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2/External/INCHI-API && /usr/bin/cmake -E copy /builddir/build/BUILD/rdkit-Release_2023_03_2/External/INCHI-API/python/inchi.py /builddir/build/BUILD/rdkit-Release_2023_03_2/rdkit/Chem/inchi.py [ 0%] Built target catch /usr/bin/gmake -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/depend gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/CMakeFiles/RDGeneral.dir/DependInfo.cmake --color= [ 0%] Built target inchi_support /usr/bin/gmake -f External/CoordGen/CMakeFiles/coordgen_support.dir/build.make External/CoordGen/CMakeFiles/coordgen_support.dir/depend gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/External/CoordGen /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/External/CoordGen /builddir/build/BUILD/rdkit-Release_2023_03_2/External/CoordGen/CMakeFiles/coordgen_support.dir/DependInfo.cmake --color= /usr/bin/gmake -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f External/CoordGen/CMakeFiles/coordgen_support.dir/build.make External/CoordGen/CMakeFiles/coordgen_support.dir/build [ 0%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/Invariant.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/RDGeneral/CMakeFiles/RDGeneral.dir/Invariant.cpp.o -MF CMakeFiles/RDGeneral.dir/Invariant.cpp.o.d -o CMakeFiles/RDGeneral.dir/Invariant.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/Invariant.cpp gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' gmake[2]: Nothing to be done for 'External/CoordGen/CMakeFiles/coordgen_support.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/Invariant.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 0%] Built target coordgen_support /usr/bin/gmake -f 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directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 0%] Building CXX object External/GA/CMakeFiles/ga.dir/ga/StringChromosome.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/External/GA && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Dga_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT External/GA/CMakeFiles/ga.dir/ga/StringChromosome.cpp.o -MF CMakeFiles/ga.dir/ga/StringChromosome.cpp.o.d -o CMakeFiles/ga.dir/ga/StringChromosome.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/External/GA/ga/StringChromosome.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/External/GA/ga/StringChromosome.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 0%] Building CXX object External/GA/CMakeFiles/ga.dir/ga/Chromosome.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/External/GA && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Dga_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT External/GA/CMakeFiles/ga.dir/ga/Chromosome.cpp.o -MF CMakeFiles/ga.dir/ga/Chromosome.cpp.o.d -o CMakeFiles/ga.dir/ga/Chromosome.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/External/GA/ga/Chromosome.cpp annobin: 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT External/GA/CMakeFiles/ga.dir/ga/IntegerStringChromosomePolicy.cpp.o -MF CMakeFiles/ga.dir/ga/IntegerStringChromosomePolicy.cpp.o.d -o CMakeFiles/ga.dir/ga/IntegerStringChromosomePolicy.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/External/GA/ga/IntegerStringChromosomePolicy.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/External/GA/ga/IntegerStringChromosomePolicy.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 1%] Building CXX object External/GA/CMakeFiles/ga.dir/ga/BinaryStringChromosomePolicy.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/External/GA && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Dga_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT External/GA/CMakeFiles/ga.dir/ga/BinaryStringChromosomePolicy.cpp.o -MF CMakeFiles/ga.dir/ga/BinaryStringChromosomePolicy.cpp.o.d -o CMakeFiles/ga.dir/ga/BinaryStringChromosomePolicy.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/External/GA/ga/BinaryStringChromosomePolicy.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/External/GA/ga/BinaryStringChromosomePolicy.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 1%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/types.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/RDGeneral/CMakeFiles/RDGeneral.dir/types.cpp.o -MF CMakeFiles/RDGeneral.dir/types.cpp.o.d -o CMakeFiles/RDGeneral.dir/types.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/types.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/types.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 1%] Building CXX object External/GA/CMakeFiles/ga.dir/util/RandomUtil.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/External/GA && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT External/GA/CMakeFiles/ga.dir/util/Util.cpp.o -MF CMakeFiles/ga.dir/util/Util.cpp.o.d -o CMakeFiles/ga.dir/util/Util.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/External/GA/util/Util.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/External/GA/util/Util.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 1%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/utils.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 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/builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/utils.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/utils.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 1%] Linking CXX shared library ../../lib/libRDKitga.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/External/GA && /usr/bin/cmake -E cmake_link_script CMakeFiles/ga.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld 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/usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/CMakeFiles/rdkitCatch.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/RDGeneral/CMakeFiles/rdkitCatch.dir/build.make Code/RDGeneral/CMakeFiles/rdkitCatch.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 1%] Building CXX object Code/RDGeneral/CMakeFiles/rdkitCatch.dir/catch_main.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdkitCatch_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/RDGeneral/CMakeFiles/rdkitCatch.dir/catch_main.cpp.o -MF CMakeFiles/rdkitCatch.dir/catch_main.cpp.o.d -o CMakeFiles/rdkitCatch.dir/catch_main.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/catch_main.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/catch_main.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 1%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/RDGeneralExceptions.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/RDGeneral/CMakeFiles/RDGeneral.dir/RDGeneralExceptions.cpp.o -MF CMakeFiles/RDGeneral.dir/RDGeneralExceptions.cpp.o.d -o CMakeFiles/RDGeneral.dir/RDGeneralExceptions.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/RDGeneralExceptions.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/RDGeneralExceptions.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/RDLog.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/RDGeneral/CMakeFiles/RDGeneral.dir/RDLog.cpp.o -MF CMakeFiles/RDGeneral.dir/RDLog.cpp.o.d -o CMakeFiles/RDGeneral.dir/RDLog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/RDLog.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/RDLog.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/RDGeneral/CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o -MF CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o.d -o CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/LocaleSwitcher.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/LocaleSwitcher.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/versions.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/RDGeneral/CMakeFiles/RDGeneral.dir/versions.cpp.o -MF CMakeFiles/RDGeneral.dir/versions.cpp.o.d -o CMakeFiles/RDGeneral.dir/versions.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/versions.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/versions.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 2%] Linking CXX shared library ../../lib/libRDKitRDGeneral.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDGeneral.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitRDGeneral.so.1 -o ../../lib/libRDKitRDGeneral.so.1.2023.03.2 CMakeFiles/RDGeneral.dir/Invariant.cpp.o CMakeFiles/RDGeneral.dir/types.cpp.o CMakeFiles/RDGeneral.dir/utils.cpp.o CMakeFiles/RDGeneral.dir/RDGeneralExceptions.cpp.o CMakeFiles/RDGeneral.dir/RDLog.cpp.o CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o CMakeFiles/RDGeneral.dir/versions.cpp.o -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDGeneral.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1 ../../lib/libRDKitRDGeneral.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 2%] Built target RDGeneral /usr/bin/gmake -f Code/RDStreams/CMakeFiles/RDStreams.dir/build.make Code/RDStreams/CMakeFiles/RDStreams.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDStreams /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDStreams /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDStreams/CMakeFiles/RDStreams.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/RDStreams/CMakeFiles/RDStreams.dir/build.make Code/RDStreams/CMakeFiles/RDStreams.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 2%] Building CXX object Code/RDStreams/CMakeFiles/RDStreams.dir/streams.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDStreams && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_RDSTREAMS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDStreams_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/RDStreams/CMakeFiles/RDStreams.dir/streams.cpp.o -MF CMakeFiles/RDStreams.dir/streams.cpp.o.d -o CMakeFiles/RDStreams.dir/streams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDStreams/streams.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDStreams/streams.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 2%] Linking CXX shared library ../../lib/libRDKitRDStreams.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDStreams && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDStreams.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitRDStreams.so.1 -o ../../lib/libRDKitRDStreams.so.1.2023.03.2 CMakeFiles/RDStreams.dir/streams.cpp.o /usr/lib64/libboost_iostreams.so.1.78.0 cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDStreams && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDStreams.so.1.2023.03.2 ../../lib/libRDKitRDStreams.so.1 ../../lib/libRDKitRDStreams.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 2%] Built target RDStreams /usr/bin/gmake -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/CMakeFiles/testMatrices.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 2%] Building CXX object Code/Numerics/CMakeFiles/testMatrices.dir/testMatrices.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/Numerics/CMakeFiles/testMatrices.dir/testMatrices.cpp.o -MF CMakeFiles/testMatrices.dir/testMatrices.cpp.o.d -o CMakeFiles/testMatrices.dir/testMatrices.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/testMatrices.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/testMatrices.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 2%] Linking CXX executable testMatrices cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMatrices.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testMatrices.dir/testMatrices.cpp.o -o testMatrices ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 2%] Built target testMatrices /usr/bin/gmake -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Catalogs /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Catalogs /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Catalogs/CMakeFiles/Catalogs.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 2%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/Catalog.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Catalogs && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DCatalogs_EXPORTS -DRDKIT_CATALOGS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/Catalogs/CMakeFiles/Catalogs.dir/Catalog.cpp.o -MF CMakeFiles/Catalogs.dir/Catalog.cpp.o.d -o CMakeFiles/Catalogs.dir/Catalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Catalogs/Catalog.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Catalogs/Catalog.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 2%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogParams.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Catalogs && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DCatalogs_EXPORTS -DRDKIT_CATALOGS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogParams.cpp.o -MF CMakeFiles/Catalogs.dir/CatalogParams.cpp.o.d -o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Catalogs/CatalogParams.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Catalogs/CatalogParams.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 2%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Catalogs && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DCatalogs_EXPORTS -DRDKIT_CATALOGS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o -MF CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o.d -o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Catalogs/CatalogEntry.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Catalogs/CatalogEntry.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 2%] Linking CXX shared library ../../lib/libRDKitCatalogs.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Catalogs && /usr/bin/cmake -E cmake_link_script CMakeFiles/Catalogs.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitCatalogs.so.1 -o ../../lib/libRDKitCatalogs.so.1.2023.03.2 CMakeFiles/Catalogs.dir/Catalog.cpp.o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Catalogs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../lib/libRDKitCatalogs.so.1 ../../lib/libRDKitCatalogs.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 2%] Built target Catalogs /usr/bin/gmake -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Query /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Query 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-grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/Query/CMakeFiles/testQuery.dir/test.cpp.o -MF CMakeFiles/testQuery.dir/test.cpp.o.d -o CMakeFiles/testQuery.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Query/test.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Query/test.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 2%] Linking CXX executable testQuery cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Query && /usr/bin/cmake -E cmake_link_script CMakeFiles/testQuery.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testQuery.dir/test.cpp.o -o testQuery ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 3%] Linking CXX shared library librdkitCatch.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdkitCatch.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,librdkitCatch.so -o librdkitCatch.so CMakeFiles/rdkitCatch.dir/catch_main.cpp.o gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 3%] Built target testQuery /usr/bin/gmake -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataManip/MetricMatrixCalc /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataManip/MetricMatrixCalc /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 3%] Building CXX object Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataManip/MetricMatrixCalc && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o -MF CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o.d -o CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataManip/MetricMatrixCalc/testMatCalc.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataManip/MetricMatrixCalc/testMatCalc.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 3%] Linking CXX executable testMatCalc cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataManip/MetricMatrixCalc && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMatCalc.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o -o testMatCalc ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 3%] Built target testMatCalc /usr/bin/gmake -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 3%] Building C object Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hc.c.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/Cluster/Murtagh && /usr/bin/gcc -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_HC_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Dhc_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hc.c.o -MF CMakeFiles/hc.dir/hc.c.o.d -o CMakeFiles/hc.dir/hc.c.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/Cluster/Murtagh/hc.c [ 3%] Building C object Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hcdriver.c.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/Cluster/Murtagh && /usr/bin/gcc -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_HC_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Dhc_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hcdriver.c.o -MF CMakeFiles/hc.dir/hcdriver.c.o.d -o CMakeFiles/hc.dir/hcdriver.c.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/Cluster/Murtagh/hcdriver.c [ 3%] Linking C shared library ../../../../lib/libRDKithc.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/Cluster/Murtagh && /usr/bin/cmake -E cmake_link_script CMakeFiles/hc.dir/link.txt --verbose=1 /usr/bin/gcc -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKithc.so.1 -o ../../../../lib/libRDKithc.so.1.2023.03.2 CMakeFiles/hc.dir/hc.c.o CMakeFiles/hc.dir/hcdriver.c.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/Cluster/Murtagh && /usr/bin/cmake -E cmake_symlink_library ../../../../lib/libRDKithc.so.1.2023.03.2 ../../../../lib/libRDKithc.so.1 ../../../../lib/libRDKithc.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 3%] Built target hc /usr/bin/gmake -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/CMakeFiles/DataStructs.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 3%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/BitVect.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/BitVect.cpp.o -MF CMakeFiles/DataStructs.dir/BitVect.cpp.o.d -o CMakeFiles/DataStructs.dir/BitVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/BitVect.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/BitVect.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 3%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o -MF CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o.d -o CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/SparseBitVect.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/SparseBitVect.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 3%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD 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CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/ExplicitBitVect.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/ExplicitBitVect.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 4%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/Utils.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/Utils.cpp.o -MF CMakeFiles/DataStructs.dir/Utils.cpp.o.d -o CMakeFiles/DataStructs.dir/Utils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Utils.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Utils.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 4%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/base64.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/base64.cpp.o -MF CMakeFiles/DataStructs.dir/base64.cpp.o.d -o CMakeFiles/DataStructs.dir/base64.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/base64.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/base64.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 4%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/BitOps.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/BitOps.cpp.o -MF CMakeFiles/DataStructs.dir/BitOps.cpp.o.d -o CMakeFiles/DataStructs.dir/BitOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/BitOps.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/BitOps.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 4%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o -MF CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o.d -o CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/DiscreteDistMat.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/DiscreteDistMat.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 4%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o -MF CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o.d -o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/DiscreteValueVect.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/DiscreteValueVect.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 4%] Built target rdkitCatch /usr/bin/gmake -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/EigenSolvers /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/EigenSolvers /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 4%] Building CXX object Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/EigenSolvers && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DEigenSolvers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_EIGENSOLVERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o -MF CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o.d -o CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/EigenSolvers/PowerEigenSolver.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/EigenSolvers/PowerEigenSolver.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 4%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/FPBReader.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/FPBReader.cpp.o -MF CMakeFiles/DataStructs.dir/FPBReader.cpp.o.d -o CMakeFiles/DataStructs.dir/FPBReader.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/FPBReader.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/FPBReader.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 5%] Linking CXX shared library ../../../lib/libRDKitEigenSolvers.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/EigenSolvers && /usr/bin/cmake -E cmake_link_script CMakeFiles/EigenSolvers.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitEigenSolvers.so.1 -o ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/EigenSolvers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1 ../../../lib/libRDKitEigenSolvers.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 5%] Built target EigenSolvers /usr/bin/gmake -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDBoost /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDBoost /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDBoost/CMakeFiles/RDBoost.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 5%] Building CXX object Code/RDBoost/CMakeFiles/RDBoost.dir/Wrap.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDBoost && /usr/bin/g++ 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/builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDBoost && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDBoost.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitRDBoost.so.1 -o ../../lib/libRDKitRDBoost.so.1.2023.03.2 CMakeFiles/RDBoost.dir/Wrap.cpp.o ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDBoost && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../lib/libRDKitRDBoost.so.1 ../../lib/libRDKitRDBoost.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 5%] Built target RDBoost /usr/bin/gmake -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral 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-grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/RDGeneral/CMakeFiles/testDict.dir/testDict.cpp.o -MF CMakeFiles/testDict.dir/testDict.cpp.o.d -o CMakeFiles/testDict.dir/testDict.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/testDict.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/testDict.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 5%] Linking CXX shared library ../../lib/libRDKitDataStructs.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/DataStructs.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitDataStructs.so.1 -o ../../lib/libRDKitDataStructs.so.1.2023.03.2 CMakeFiles/DataStructs.dir/BitVect.cpp.o CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o CMakeFiles/DataStructs.dir/Utils.cpp.o CMakeFiles/DataStructs.dir/base64.cpp.o CMakeFiles/DataStructs.dir/BitOps.cpp.o CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o CMakeFiles/DataStructs.dir/FPBReader.cpp.o CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1 ../../lib/libRDKitDataStructs.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 5%] Built target DataStructs /usr/bin/gmake -f Code/RDGeneral/CMakeFiles/testRDValue.dir/build.make Code/RDGeneral/CMakeFiles/testRDValue.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/CMakeFiles/testRDValue.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/RDGeneral/CMakeFiles/testRDValue.dir/build.make Code/RDGeneral/CMakeFiles/testRDValue.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 5%] Building CXX object Code/RDGeneral/CMakeFiles/testRDValue.dir/testRDValue.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/RDGeneral/CMakeFiles/testRDValue.dir/testRDValue.cpp.o -MF CMakeFiles/testRDValue.dir/testRDValue.cpp.o.d -o CMakeFiles/testRDValue.dir/testRDValue.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/testRDValue.cpp annobin: 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-ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testConcurrentQueue.dir/testConcurrentQueue.cpp.o -o testConcurrentQueue ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 5%] Built target testConcurrentQueue /usr/bin/gmake -f Code/RDGeneral/CMakeFiles/dictTestsCatch.dir/build.make Code/RDGeneral/CMakeFiles/dictTestsCatch.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/CMakeFiles/dictTestsCatch.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/RDGeneral/CMakeFiles/dictTestsCatch.dir/build.make Code/RDGeneral/CMakeFiles/dictTestsCatch.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 5%] Building CXX object Code/RDGeneral/CMakeFiles/dictTestsCatch.dir/catch_dict.cpp.o cd 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dictTestsCatch cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/dictTestsCatch.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/dictTestsCatch.dir/catch_dict.cpp.o -o dictTestsCatch librdkitCatch.so 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CMakeFiles/logTestsCatch.dir/catch_logs.cpp.o -o logTestsCatch librdkitCatch.so ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 6%] Building CXX object Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/RDBase.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDBoost/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdBase_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong 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-Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o -o testDataStructs ../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 6%] Built target testDataStructs /usr/bin/gmake -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs 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Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DataStructs.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DataStructs.cpp.o -MF CMakeFiles/cDataStructs.dir/DataStructs.cpp.o.d -o CMakeFiles/cDataStructs.dir/DataStructs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/DataStructs.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/DataStructs.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 6%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o -MF CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o.d -o CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/DiscreteValueVect.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/DiscreteValueVect.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 7%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o -MF CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o.d -o CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 7%] Built target rdBase /usr/bin/gmake -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataManip/MetricMatrixCalc/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataManip/MetricMatrixCalc/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 7%] Building CXX object Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataManip/MetricMatrixCalc/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMetricMatrixCalc_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o -MF CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o.d -o CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataManip/MetricMatrixCalc/Wrap/rdMetricMatrixCalc.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataManip/MetricMatrixCalc/Wrap/rdMetricMatrixCalc.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp: In instantiation of 'boost::python::list {anonymous}::BulkDice(const T&, boost::python::list, bool) [with T = RDKit::SparseIntVect]': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:190:16: required from 'static void sparseIntVec_wrapper::wrapOne(const char*) [with IndexType = int]' /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:219:26: required from here /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:77:14: warning: possibly dangling reference to a temporary [-Wdangling-reference] 77 | const T &siv2 = python::extract(sivs[i])(); | ^~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:77:48: note: the temporary was destroyed at the end of the full expression 'boost::python::extract >(boost::python::api::proxy::operator boost::python::api::object() const [with Policies = boost::python::api::item_policies]()).boost::python::extract >::.boost::python::converter::extract_rvalue >::operator()()' 77 | const T &siv2 = python::extract(sivs[i])(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp: In instantiation of 'boost::python::list {anonymous}::BulkTanimoto(const T&, boost::python::list, bool) [with T = RDKit::SparseIntVect]': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:200:16: required from 'static void sparseIntVec_wrapper::wrapOne(const char*) [with IndexType = int]' /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:219:26: required from here /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:90:14: warning: possibly dangling reference to a temporary [-Wdangling-reference] 90 | const T &siv2 = python::extract(sivs[i])(); | ^~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:90:48: note: the temporary was destroyed at the end of the full expression 'boost::python::extract >(boost::python::api::proxy::operator boost::python::api::object() const [with Policies = boost::python::api::item_policies]()).boost::python::extract >::.boost::python::converter::extract_rvalue >::operator()()' 90 | const T &siv2 = python::extract(sivs[i])(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp: In instantiation of 'boost::python::list {anonymous}::BulkTversky(const T&, boost::python::list, double, double, bool) [with T = RDKit::SparseIntVect]': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:211:16: required from 'static void sparseIntVec_wrapper::wrapOne(const char*) [with IndexType = int]' /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:219:26: required from here /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:104:14: warning: possibly dangling reference to a temporary [-Wdangling-reference] 104 | const T &siv2 = python::extract(sivs[i])(); | ^~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:104:48: note: the temporary was destroyed at the end of the full expression 'boost::python::extract >(boost::python::api::proxy::operator boost::python::api::object() const [with Policies = boost::python::api::item_policies]()).boost::python::extract >::.boost::python::converter::extract_rvalue >::operator()()' 104 | const T &siv2 = python::extract(sivs[i])(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp: In instantiation of 'boost::python::list {anonymous}::BulkDice(const T&, boost::python::list, bool) [with T = RDKit::SparseIntVect]': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:190:16: required from 'static void sparseIntVec_wrapper::wrapOne(const char*) [with IndexType = long int]' /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:220:28: required from here /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:77:14: warning: possibly dangling reference to a temporary [-Wdangling-reference] 77 | const T &siv2 = python::extract(sivs[i])(); | ^~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:77:48: note: the temporary was destroyed at the end of the full expression 'boost::python::extract >(boost::python::api::proxy::operator boost::python::api::object() const [with Policies = boost::python::api::item_policies]()).boost::python::extract >::.boost::python::converter::extract_rvalue >::operator()()' 77 | const T &siv2 = python::extract(sivs[i])(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp: In instantiation of 'boost::python::list {anonymous}::BulkTanimoto(const T&, boost::python::list, bool) [with T = RDKit::SparseIntVect]': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:200:16: required from 'static void sparseIntVec_wrapper::wrapOne(const char*) [with IndexType = long int]' /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:220:28: required from here /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:90:14: warning: possibly dangling reference to a temporary [-Wdangling-reference] 90 | const T &siv2 = python::extract(sivs[i])(); | ^~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:90:48: note: the temporary was destroyed at the end of the full expression 'boost::python::extract >(boost::python::api::proxy::operator boost::python::api::object() const [with Policies = boost::python::api::item_policies]()).boost::python::extract >::.boost::python::converter::extract_rvalue >::operator()()' 90 | const T &siv2 = python::extract(sivs[i])(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp: In instantiation of 'boost::python::list {anonymous}::BulkTversky(const T&, boost::python::list, double, double, bool) [with T = RDKit::SparseIntVect]': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:211:16: required from 'static void sparseIntVec_wrapper::wrapOne(const char*) [with IndexType = long int]' /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:220:28: required from here /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:104:14: warning: possibly dangling reference to a temporary [-Wdangling-reference] 104 | const T &siv2 = python::extract(sivs[i])(); | ^~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:104:48: note: the temporary was destroyed at the end of the full expression 'boost::python::extract >(boost::python::api::proxy::operator boost::python::api::object() const [with Policies = boost::python::api::item_policies]()).boost::python::extract >::.boost::python::converter::extract_rvalue >::operator()()' 104 | const T &siv2 = python::extract(sivs[i])(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp: In instantiation of 'boost::python::list {anonymous}::BulkDice(const T&, boost::python::list, bool) [with T = RDKit::SparseIntVect]': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:190:16: required from 'static void sparseIntVec_wrapper::wrapOne(const char*) [with IndexType = unsigned int]' /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:221:27: required from here /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:77:14: warning: possibly dangling reference to a temporary [-Wdangling-reference] 77 | const T &siv2 = python::extract(sivs[i])(); | ^~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:77:48: note: the temporary was destroyed at the end of the full expression 'boost::python::extract >(boost::python::api::proxy::operator boost::python::api::object() const [with Policies = boost::python::api::item_policies]()).boost::python::extract >::.boost::python::converter::extract_rvalue >::operator()()' 77 | const T &siv2 = python::extract(sivs[i])(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp: In instantiation of 'boost::python::list {anonymous}::BulkTanimoto(const T&, boost::python::list, bool) [with T = RDKit::SparseIntVect]': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:200:16: required from 'static void sparseIntVec_wrapper::wrapOne(const char*) [with IndexType = unsigned int]' /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:221:27: required from here /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:90:14: warning: possibly dangling reference to a temporary [-Wdangling-reference] 90 | const T &siv2 = python::extract(sivs[i])(); | ^~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:90:48: note: the temporary was destroyed at the end of the full expression 'boost::python::extract >(boost::python::api::proxy::operator boost::python::api::object() const [with Policies = boost::python::api::item_policies]()).boost::python::extract >::.boost::python::converter::extract_rvalue >::operator()()' 90 | const T &siv2 = python::extract(sivs[i])(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp: In instantiation of 'boost::python::list {anonymous}::BulkTversky(const T&, boost::python::list, double, double, bool) [with T = RDKit::SparseIntVect]': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:211:16: required from 'static void sparseIntVec_wrapper::wrapOne(const char*) [with IndexType = unsigned int]' /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:221:27: required from here /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:104:14: warning: possibly dangling reference to a temporary [-Wdangling-reference] 104 | const T &siv2 = python::extract(sivs[i])(); | ^~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:104:48: note: the temporary was destroyed at the end of the full expression 'boost::python::extract >(boost::python::api::proxy::operator boost::python::api::object() const [with Policies = boost::python::api::item_policies]()).boost::python::extract >::.boost::python::converter::extract_rvalue >::operator()()' 104 | const T &siv2 = python::extract(sivs[i])(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp: In instantiation of 'boost::python::list {anonymous}::BulkDice(const T&, boost::python::list, bool) [with T = RDKit::SparseIntVect]': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:190:16: required from 'static void sparseIntVec_wrapper::wrapOne(const char*) [with IndexType = long unsigned int]' /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:222:29: required from here /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:77:14: warning: possibly dangling reference to a temporary [-Wdangling-reference] 77 | const T &siv2 = python::extract(sivs[i])(); | ^~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:77:48: note: the temporary was destroyed at the end of the full expression 'boost::python::extract >(boost::python::api::proxy::operator boost::python::api::object() const [with Policies = boost::python::api::item_policies]()).boost::python::extract >::.boost::python::converter::extract_rvalue >::operator()()' 77 | const T &siv2 = python::extract(sivs[i])(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp: In instantiation of 'boost::python::list {anonymous}::BulkTanimoto(const T&, boost::python::list, bool) [with T = RDKit::SparseIntVect]': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:200:16: required from 'static void sparseIntVec_wrapper::wrapOne(const char*) [with IndexType = long unsigned int]' /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:222:29: required from here /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:90:14: warning: possibly dangling reference to a temporary [-Wdangling-reference] 90 | const T &siv2 = python::extract(sivs[i])(); | ^~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:90:48: note: the temporary was destroyed at the end of the full expression 'boost::python::extract >(boost::python::api::proxy::operator boost::python::api::object() const [with Policies = boost::python::api::item_policies]()).boost::python::extract >::.boost::python::converter::extract_rvalue >::operator()()' 90 | const T &siv2 = python::extract(sivs[i])(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp: In instantiation of 'boost::python::list {anonymous}::BulkTversky(const T&, boost::python::list, double, double, bool) [with T = RDKit::SparseIntVect]': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:211:16: required from 'static void sparseIntVec_wrapper::wrapOne(const char*) [with IndexType = long unsigned int]' /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:222:29: required from here /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:104:14: warning: possibly dangling reference to a temporary [-Wdangling-reference] 104 | const T &siv2 = python::extract(sivs[i])(); | ^~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:104:48: note: the temporary was destroyed at the end of the full expression 'boost::python::extract >(boost::python::api::proxy::operator boost::python::api::object() const [with Policies = boost::python::api::item_policies]()).boost::python::extract >::.boost::python::converter::extract_rvalue >::operator()()' 104 | const T &siv2 = python::extract(sivs[i])(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ [ 7%] Linking CXX shared module ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataManip/MetricMatrixCalc/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMetricMatrixCalc.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 7%] Built target rdMetricMatrixCalc /usr/bin/gmake -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 7%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/SimDivPickers && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_SIMDIVPICKERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o -MF CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o.d -o CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/SimDivPickers/DistPicker.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/SimDivPickers/DistPicker.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 7%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/SimDivPickers && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_SIMDIVPICKERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o -MF CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o.d -o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/SimDivPickers/MaxMinPicker.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/SimDivPickers/MaxMinPicker.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 7%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/SimDivPickers && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_SIMDIVPICKERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o -MF CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o.d -o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/SimDivPickers/HierarchicalClusterPicker.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/SimDivPickers/HierarchicalClusterPicker.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 7%] Linking CXX shared library ../../lib/libRDKitSimDivPickers.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/SimDivPickers && /usr/bin/cmake -E cmake_link_script CMakeFiles/SimDivPickers.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitSimDivPickers.so.1 -o ../../lib/libRDKitSimDivPickers.so.1.2023.03.2 CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o ../../lib/libRDKithc.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/SimDivPickers && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitSimDivPickers.so.1.2023.03.2 ../../lib/libRDKitSimDivPickers.so.1 ../../lib/libRDKitSimDivPickers.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 7%] Built target SimDivPickers /usr/bin/gmake -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 7%] Building CXX object Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/Clustering.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/Cluster/Murtagh && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DClustering_EXPORTS -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection 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/builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/wrap_BitOps.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 8%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong 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/builddir/build/BUILD/rdkit-Release_2023_03_2/Code/SimDivPickers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSimDivPickers.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o -o testSimDivPickers ../../lib/libRDKitSimDivPickers.so.1.2023.03.2 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Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection 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-Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/LeaderPicker.cpp.o -MF CMakeFiles/rdSimDivPickers.dir/LeaderPicker.cpp.o.d -o CMakeFiles/rdSimDivPickers.dir/LeaderPicker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/SimDivPickers/Wrap/LeaderPicker.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/SimDivPickers/Wrap/LeaderPicker.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 10%] Linking CXX shared module ../../../rdkit/DataStructs/cDataStructs.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/cDataStructs.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong 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Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/SimDivPickers/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection 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Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o -MF CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o.d -o CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ChemicalFeatures/FreeChemicalFeature.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ChemicalFeatures/FreeChemicalFeature.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 10%] Linking CXX shared library ../../lib/libRDKitChemicalFeatures.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemicalFeatures.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitChemicalFeatures.so.1 -o ../../lib/libRDKitChemicalFeatures.so.1.2023.03.2 CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ChemicalFeatures && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitChemicalFeatures.so.1.2023.03.2 ../../lib/libRDKitChemicalFeatures.so.1 ../../lib/libRDKitChemicalFeatures.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 10%] Built target ChemicalFeatures /usr/bin/gmake -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CMakeFiles/GraphMol.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 10%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Atom.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer 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-I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o -MF CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o.d -o CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/InfoTheory/Wrap/rdInfoTheory.cpp annobin: 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-DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/QueryAtom.cpp.o -MF CMakeFiles/GraphMol.dir/QueryAtom.cpp.o.d -o CMakeFiles/GraphMol.dir/QueryAtom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/QueryAtom.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/QueryAtom.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 10%] Built target rdInfoTheory /usr/bin/gmake -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/CMakeFiles/testTransforms.dir/DependInfo.cmake --color= gmake[2]: Leaving 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/Geometry/CMakeFiles/testTransforms.dir/testTransforms.cpp.o -MF CMakeFiles/testTransforms.dir/testTransforms.cpp.o.d -o CMakeFiles/testTransforms.dir/testTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/testTransforms.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/testTransforms.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 10%] Linking CXX executable testTransforms cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/testTransforms.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto 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/usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/Geometry/CMakeFiles/testGrid.dir/testGrid.cpp.o -MF CMakeFiles/testGrid.dir/testGrid.cpp.o.d -o CMakeFiles/testGrid.dir/testGrid.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/testGrid.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/testGrid.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 11%] Linking CXX executable testGrid cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry && /usr/bin/cmake 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'/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 11%] Built target testGrid /usr/bin/gmake -f Code/Geometry/CMakeFiles/geometryTestsCatch.dir/build.make Code/Geometry/CMakeFiles/geometryTestsCatch.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/CMakeFiles/geometryTestsCatch.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/Geometry/CMakeFiles/geometryTestsCatch.dir/build.make Code/Geometry/CMakeFiles/geometryTestsCatch.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 11%] Building CXX object Code/Geometry/CMakeFiles/geometryTestsCatch.dir/catch_tests.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection 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-specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/geometryTestsCatch.dir/catch_tests.cpp.o -o geometryTestsCatch ../RDGeneral/librdkitCatch.so ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 12%] Built target geometryTestsCatch /usr/bin/gmake -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/Wrap 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-I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/Point.cpp.o -MF CMakeFiles/rdGeometry.dir/Point.cpp.o.d -o CMakeFiles/rdGeometry.dir/Point.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/Wrap/Point.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/Wrap/Point.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 12%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolOps.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer 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-I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o -MF CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o.d -o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/Wrap/UniformGrid3D.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/Wrap/UniformGrid3D.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 12%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/FindRings.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong 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~~~~~~~~~~~~~^~~ [ 13%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o -MF CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o.d -o CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/Wrap/rdGeometry.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/Wrap/rdGeometry.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 13%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/ROMol.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/ROMol.cpp.o -MF CMakeFiles/GraphMol.dir/ROMol.cpp.o.d -o CMakeFiles/GraphMol.dir/ROMol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ROMol.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ROMol.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 13%] Linking CXX shared module ../../../rdkit/Geometry/rdGeometry.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdGeometry.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../rdkit/Geometry/rdGeometry.so CMakeFiles/rdGeometry.dir/Point.cpp.o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 13%] Built target rdGeometry /usr/bin/gmake -f Code/Numerics/CMakeFiles/testConrec.dir/build.make Code/Numerics/CMakeFiles/testConrec.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/CMakeFiles/testConrec.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/Numerics/CMakeFiles/testConrec.dir/build.make Code/Numerics/CMakeFiles/testConrec.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 13%] Building CXX object Code/Numerics/CMakeFiles/testConrec.dir/testConrec.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/Numerics/CMakeFiles/testConrec.dir/testConrec.cpp.o -MF CMakeFiles/testConrec.dir/testConrec.cpp.o.d -o CMakeFiles/testConrec.dir/testConrec.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/testConrec.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/testConrec.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 13%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/RWMol.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/RWMol.cpp.o -MF CMakeFiles/GraphMol.dir/RWMol.cpp.o.d -o CMakeFiles/GraphMol.dir/RWMol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/RWMol.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/RWMol.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 13%] Linking CXX executable testConrec cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics && /usr/bin/cmake -E cmake_link_script CMakeFiles/testConrec.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testConrec.dir/testConrec.cpp.o -o testConrec ../RDGeneral/librdkitCatch.so ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 13%] Built target testConrec /usr/bin/gmake -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment/CMakeFiles/Alignment.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 13%] Building CXX object Code/Numerics/Alignment/CMakeFiles/Alignment.dir/AlignPoints.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment && /usr/bin/g++ -DAlignment_EXPORTS -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_ALIGNMENT_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/Numerics/Alignment/CMakeFiles/Alignment.dir/AlignPoints.cpp.o -MF CMakeFiles/Alignment.dir/AlignPoints.cpp.o.d -o CMakeFiles/Alignment.dir/AlignPoints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment/AlignPoints.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment/AlignPoints.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 13%] Linking CXX shared library ../../../lib/libRDKitAlignment.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_link_script CMakeFiles/Alignment.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitAlignment.so.1 -o ../../../lib/libRDKitAlignment.so.1.2023.03.2 CMakeFiles/Alignment.dir/AlignPoints.cpp.o ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitAlignment.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1 ../../../lib/libRDKitAlignment.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 13%] Built target Alignment /usr/bin/gmake -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 13%] Building CXX object Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ChemicalFeatures && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o -MF CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o.d -o CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ChemicalFeatures/testChemicalFeatures.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ChemicalFeatures/testChemicalFeatures.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 13%] Linking CXX executable testChemicalFeatures cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/testChemicalFeatures.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o -o testChemicalFeatures ../../lib/libRDKitChemicalFeatures.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 13%] Built target testChemicalFeatures /usr/bin/gmake -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 13%] Building CXX object Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/testAlignment.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/testAlignment.cpp.o -MF CMakeFiles/testAlignment.dir/testAlignment.cpp.o.d -o CMakeFiles/testAlignment.dir/testAlignment.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment/testAlignment.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment/testAlignment.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 13%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o -MF CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o.d -o CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PeriodicTable.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PeriodicTable.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 13%] Linking CXX executable testAlignment cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_link_script CMakeFiles/testAlignment.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testAlignment.dir/testAlignment.cpp.o -o testAlignment ../../../lib/libRDKitAlignment.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 13%] Built target testAlignment /usr/bin/gmake -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/DependInfo.cmake --color= [ 13%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/atomic_data.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/atomic_data.cpp.o -MF CMakeFiles/GraphMol.dir/atomic_data.cpp.o.d -o CMakeFiles/GraphMol.dir/atomic_data.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/atomic_data.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 13%] Building CXX object Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdAlignment_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o -MF CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o.d -o CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment/Wrap/rdAlignment.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/atomic_data.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment/Wrap/rdAlignment.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 13%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryOps.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS 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/builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/QueryOps.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/QueryOps.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 13%] Linking CXX shared module ../../../../rdkit/Numerics/rdAlignment.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdAlignment.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Numerics/rdAlignment.so CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o ../../../../lib/libRDKitAlignment.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 13%] Built target rdAlignment [ 14%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolPickler.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/MolPickler.cpp.o -MF CMakeFiles/GraphMol.dir/MolPickler.cpp.o.d -o CMakeFiles/GraphMol.dir/MolPickler.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolPickler.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolPickler.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 14%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Canon.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Canon.cpp.o -MF CMakeFiles/GraphMol.dir/Canon.cpp.o.d -o CMakeFiles/GraphMol.dir/Canon.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Canon.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Canon.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolPickler.cpp: In instantiation of 'static RDKit::Atom* RDKit::MolPickler::_addAtomFromPickle(std::istream&, RDKit::ROMol*, RDGeom::Point3D&, int, bool) [with T = int; std::istream = std::basic_istream]': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolPickler.cpp:1081:39: required from 'static void RDKit::MolPickler::_depickle(std::istream&, RDKit::ROMol*, int, int, unsigned int) [with T = int; std::istream = std::basic_istream]' /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolPickler.cpp:854:27: required from here /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolPickler.cpp:1666:37: warning: comparison is always false due to limited range of data type [-Wtype-limits] 1666 | if ((tmpChar < 0 || tmpChar > 127) && version > 9000) { | ~~~~~~~~^~~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolPickler.cpp: In instantiation of 'static RDKit::Atom* RDKit::MolPickler::_addAtomFromPickle(std::istream&, RDKit::ROMol*, RDGeom::Point3D&, int, bool) [with T = unsigned char; std::istream = std::basic_istream]': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolPickler.cpp:1081:39: required from 'static void RDKit::MolPickler::_depickle(std::istream&, RDKit::ROMol*, int, int, unsigned int) [with T = unsigned char; std::istream = std::basic_istream]' /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolPickler.cpp:856:33: required from here /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolPickler.cpp:1666:37: warning: comparison is always false due to limited range of data type [-Wtype-limits] [ 14%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AtomIterators.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/AtomIterators.cpp.o -MF CMakeFiles/GraphMol.dir/AtomIterators.cpp.o.d -o CMakeFiles/GraphMol.dir/AtomIterators.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/AtomIterators.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/AtomIterators.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 14%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/BondIterators.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/BondIterators.cpp.o -MF CMakeFiles/GraphMol.dir/BondIterators.cpp.o.d -o CMakeFiles/GraphMol.dir/BondIterators.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/BondIterators.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/BondIterators.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 14%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Aromaticity.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Aromaticity.cpp.o -MF CMakeFiles/GraphMol.dir/Aromaticity.cpp.o.d -o CMakeFiles/GraphMol.dir/Aromaticity.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Aromaticity.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Aromaticity.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 14%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Kekulize.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Kekulize.cpp.o -MF CMakeFiles/GraphMol.dir/Kekulize.cpp.o.d -o CMakeFiles/GraphMol.dir/Kekulize.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Kekulize.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Kekulize.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 14%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o -MF CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o.d -o CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ConjugHybrid.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ConjugHybrid.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 14%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AddHs.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/AddHs.cpp.o -MF CMakeFiles/GraphMol.dir/AddHs.cpp.o.d -o CMakeFiles/GraphMol.dir/AddHs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/AddHs.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/AddHs.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 15%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Matrices.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Matrices.cpp.o -MF CMakeFiles/GraphMol.dir/Matrices.cpp.o.d -o CMakeFiles/GraphMol.dir/Matrices.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Matrices.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Matrices.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 15%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Chirality.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Chirality.cpp.o -MF CMakeFiles/GraphMol.dir/Chirality.cpp.o.d -o CMakeFiles/GraphMol.dir/Chirality.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Chirality.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Chirality.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 15%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/RingInfo.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/RingInfo.cpp.o -MF CMakeFiles/GraphMol.dir/RingInfo.cpp.o.d -o CMakeFiles/GraphMol.dir/RingInfo.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/RingInfo.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/RingInfo.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 15%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Conformer.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Conformer.cpp.o -MF CMakeFiles/GraphMol.dir/Conformer.cpp.o.d -o CMakeFiles/GraphMol.dir/Conformer.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Conformer.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Conformer.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 15%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Renumber.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Renumber.cpp.o -MF CMakeFiles/GraphMol.dir/Renumber.cpp.o.d -o CMakeFiles/GraphMol.dir/Renumber.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Renumber.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Renumber.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 15%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o -MF CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o.d -o CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/AdjustQuery.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/AdjustQuery.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 15%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Resonance.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Resonance.cpp.o -MF CMakeFiles/GraphMol.dir/Resonance.cpp.o.d -o CMakeFiles/GraphMol.dir/Resonance.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Resonance.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Resonance.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 15%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/StereoGroup.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/StereoGroup.cpp.o -MF CMakeFiles/GraphMol.dir/StereoGroup.cpp.o.d -o CMakeFiles/GraphMol.dir/StereoGroup.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/StereoGroup.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/StereoGroup.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 15%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/new_canon.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/new_canon.cpp.o -MF CMakeFiles/GraphMol.dir/new_canon.cpp.o.d -o CMakeFiles/GraphMol.dir/new_canon.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/new_canon.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/new_canon.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 16%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/SubstanceGroup.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/SubstanceGroup.cpp.o -MF CMakeFiles/GraphMol.dir/SubstanceGroup.cpp.o.d -o CMakeFiles/GraphMol.dir/SubstanceGroup.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstanceGroup.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstanceGroup.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 16%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/FindStereo.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/FindStereo.cpp.o -MF CMakeFiles/GraphMol.dir/FindStereo.cpp.o.d -o CMakeFiles/GraphMol.dir/FindStereo.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FindStereo.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FindStereo.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 16%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MonomerInfo.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/MonomerInfo.cpp.o -MF CMakeFiles/GraphMol.dir/MonomerInfo.cpp.o.d -o CMakeFiles/GraphMol.dir/MonomerInfo.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MonomerInfo.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MonomerInfo.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 16%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/NontetrahedralStereo.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/NontetrahedralStereo.cpp.o -MF CMakeFiles/GraphMol.dir/NontetrahedralStereo.cpp.o.d -o CMakeFiles/GraphMol.dir/NontetrahedralStereo.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/NontetrahedralStereo.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/NontetrahedralStereo.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 16%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/WedgeBonds.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/WedgeBonds.cpp.o -MF CMakeFiles/GraphMol.dir/WedgeBonds.cpp.o.d -o CMakeFiles/GraphMol.dir/WedgeBonds.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/WedgeBonds.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/WedgeBonds.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 16%] Linking CXX shared library ../../lib/libRDKitGraphMol.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/GraphMol.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitGraphMol.so.1 -o ../../lib/libRDKitGraphMol.so.1.2023.03.2 CMakeFiles/GraphMol.dir/Atom.cpp.o CMakeFiles/GraphMol.dir/QueryAtom.cpp.o CMakeFiles/GraphMol.dir/QueryBond.cpp.o CMakeFiles/GraphMol.dir/Bond.cpp.o CMakeFiles/GraphMol.dir/MolOps.cpp.o CMakeFiles/GraphMol.dir/FindRings.cpp.o CMakeFiles/GraphMol.dir/ROMol.cpp.o CMakeFiles/GraphMol.dir/RWMol.cpp.o CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o CMakeFiles/GraphMol.dir/atomic_data.cpp.o CMakeFiles/GraphMol.dir/QueryOps.cpp.o CMakeFiles/GraphMol.dir/MolPickler.cpp.o CMakeFiles/GraphMol.dir/Canon.cpp.o CMakeFiles/GraphMol.dir/AtomIterators.cpp.o CMakeFiles/GraphMol.dir/BondIterators.cpp.o CMakeFiles/GraphMol.dir/Aromaticity.cpp.o CMakeFiles/GraphMol.dir/Kekulize.cpp.o CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o CMakeFiles/GraphMol.dir/AddHs.cpp.o CMakeFiles/GraphMol.dir/Matrices.cpp.o CMakeFiles/GraphMol.dir/Chirality.cpp.o CMakeFiles/GraphMol.dir/RingInfo.cpp.o CMakeFiles/GraphMol.dir/Conformer.cpp.o CMakeFiles/GraphMol.dir/Renumber.cpp.o CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o CMakeFiles/GraphMol.dir/Resonance.cpp.o CMakeFiles/GraphMol.dir/StereoGroup.cpp.o CMakeFiles/GraphMol.dir/new_canon.cpp.o CMakeFiles/GraphMol.dir/SubstanceGroup.cpp.o CMakeFiles/GraphMol.dir/FindStereo.cpp.o CMakeFiles/GraphMol.dir/MonomerInfo.cpp.o CMakeFiles/GraphMol.dir/NontetrahedralStereo.cpp.o CMakeFiles/GraphMol.dir/WedgeBonds.cpp.o ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl In function 'add_edge', inlined from 'addBond' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/RWMol.cpp:396:42: /usr/include/boost/graph/detail/adjacency_list.hpp:2266:20: warning: 'p' may be used uninitialized [-Wmaybe-uninitialized] 2266 | return add_edge(u, v, p, g_); | ^ /usr/include/boost/graph/detail/adjacency_list.hpp: In member function 'addBond': /usr/include/boost/graph/detail/adjacency_list.hpp:2247:60: note: by argument 3 of type 'struct Bond * const &' to 'add_edge' declared here 2247 | inline std::pair< typename Config::edge_descriptor, bool > add_edge( | ^ /usr/include/boost/graph/detail/adjacency_list.hpp:2265:41: note: 'p' declared here 2265 | typename Config::edge_property_type p; | ^ cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1 ../../lib/libRDKitGraphMol.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 16%] Built target GraphMol /usr/bin/gmake -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/depend /usr/bin/gmake -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/DependInfo.cmake --color= gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 16%] Building CXX object Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolTransforms_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLTRANSFORMS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o -MF CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o.d -o CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms/MolTransforms.cpp [ 16%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o -MF CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o.d -o CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/SmilesParse.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms/MolTransforms.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/SmilesParse.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 16%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o -MF CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o.d -o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/SmilesParseOps.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/SmilesParseOps.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 16%] Linking CXX shared library ../../../lib/libRDKitMolTransforms.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolTransforms.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitMolTransforms.so.1 -o ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1 ../../../lib/libRDKitMolTransforms.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 16%] Built target MolTransforms /usr/bin/gmake -f Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/build.make Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/GenericGroups /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/GenericGroups /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/build.make Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 16%] Building CXX object Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/GenericGroups.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/GenericGroups && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGenericGroups_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GENERICGROUPS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/GenericGroups.cpp.o -MF CMakeFiles/GenericGroups.dir/GenericGroups.cpp.o.d -o CMakeFiles/GenericGroups.dir/GenericGroups.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/GenericGroups/GenericGroups.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/GenericGroups/GenericGroups.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 17%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o -MF CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o.d -o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/SmilesWrite.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/SmilesWrite.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 17%] Linking CXX shared library ../../../lib/libRDKitGenericGroups.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/GenericGroups && /usr/bin/cmake -E cmake_link_script CMakeFiles/GenericGroups.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitGenericGroups.so.1 -o ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 CMakeFiles/GenericGroups.dir/GenericGroups.cpp.o ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.78.0 cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/GenericGroups && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1 ../../../lib/libRDKitGenericGroups.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 17%] Built target GenericGroups /usr/bin/gmake -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 18%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SUBGRAPHS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubgraphs_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o -MF CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o.d -o CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs/Subgraphs.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs/Subgraphs.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 18%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o -MF CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o.d -o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/SmartsWrite.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/SmartsWrite.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 18%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SUBGRAPHS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubgraphs_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o -MF CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o.d -o CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs/SubgraphUtils.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs/SubgraphUtils.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 18%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o -MF CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o.d -o CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/CXSmilesOps.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/CXSmilesOps.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 18%] Linking CXX shared library ../../../lib/libRDKitSubgraphs.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/Subgraphs.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitSubgraphs.so.1 -o ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.78.0 cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1 ../../../lib/libRDKitSubgraphs.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 18%] Built target Subgraphs /usr/bin/gmake -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 19%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DPartialCharges_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_PARTIALCHARGES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o -MF CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o.d -o CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges/GasteigerCharges.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges/GasteigerCharges.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 19%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DPartialCharges_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_PARTIALCHARGES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o -MF CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o.d -o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges/GasteigerParams.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges/GasteigerParams.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 19%] Linking CXX shared library ../../../lib/libRDKitPartialCharges.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_link_script CMakeFiles/PartialCharges.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitPartialCharges.so.1 -o ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.78.0 cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitPartialCharges.so.1 ../../../lib/libRDKitPartialCharges.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 19%] Built target PartialCharges /usr/bin/gmake -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 19%] Building CXX object Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/Trajectory.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Trajectory && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_TRAJECTORY_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DTrajectory_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/Trajectory.cpp.o -MF CMakeFiles/Trajectory.dir/Trajectory.cpp.o.d -o CMakeFiles/Trajectory.dir/Trajectory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Trajectory/Trajectory.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Trajectory/Trajectory.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 19%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o -MF CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o.d -o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/smarts.tab.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/smarts.tab.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 19%] Linking CXX shared library ../../../lib/libRDKitTrajectory.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Trajectory && /usr/bin/cmake -E cmake_link_script CMakeFiles/Trajectory.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitTrajectory.so.1 -o ../../../lib/libRDKitTrajectory.so.1.2023.03.2 CMakeFiles/Trajectory.dir/Trajectory.cpp.o ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.78.0 cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Trajectory && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../lib/libRDKitTrajectory.so.1 ../../../lib/libRDKitTrajectory.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 19%] Built target Trajectory /usr/bin/gmake -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 19%] Building CXX object Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdPartialCharges_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o -MF CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o.d -o CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges/Wrap/rdPartialCharges.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges/Wrap/rdPartialCharges.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 19%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o -MF CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o.d -o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/smiles.tab.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/smiles.tab.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 19%] Linking CXX shared module ../../../../rdkit/Chem/rdPartialCharges.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdPartialCharges.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/rdPartialCharges.so CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o ../../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 19%] Built target rdPartialCharges /usr/bin/gmake -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 19%] Building CXX object Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolTransforms_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic 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CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o.d -o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/lex.yysmarts.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/lex.yysmarts.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 19%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o -MF CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o.d -o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/lex.yysmiles.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/lex.yysmiles.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 19%] Linking CXX shared module ../../../../rdkit/Chem/rdMolTransforms.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolTransforms.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/rdMolTransforms.so CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 19%] Built target rdMolTransforms /usr/bin/gmake -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 20%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SHAPEHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DShapeHelpers_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o -MF CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o.d -o CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/ShapeEncoder.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/ShapeEncoder.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 20%] Linking CXX shared library ../../../lib/libRDKitSmilesParse.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/SmilesParse.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitSmilesParse.so.1 -o ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.78.0 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/smarts.tab.hpp:104:7: warning: type 'union YYSTYPE' violates the C++ One Definition Rule [-Wodr] 104 | union YYSTYPE { | ^ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/smiles.tab.hpp:77:7: note: a different type is defined in another translation unit 77 | union YYSTYPE { | ^ smarts.yy:81:21: note: the first difference of corresponding definitions is field 'atom' 81 | RDKit::QueryAtom * atom; | ^ smiles.yy:84:16: note: a field of same name but different type is defined in another translation unit 84 | RDKit::Atom * atom; | ^ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/QueryAtom.h:28:29: note: type name 'RDKit::QueryAtom' should match type name 'RDKit::Atom' 28 | class RDKIT_GRAPHMOL_EXPORT QueryAtom : public Atom { | ^ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Atom.h:68:29: note: the incompatible type is defined here 68 | class RDKIT_GRAPHMOL_EXPORT Atom : public RDProps { | ^ /scratch/RDKit_git/Code/GraphMol/SmilesParse/smarts.tab.cpp:491:7: warning: type 'union yyalloc' violates the C++ One Definition Rule [-Wodr] /scratch/RDKit_git/Code/GraphMol/SmilesParse/smiles.tab.cpp:488:7: note: a different type is defined in another translation unit /scratch/RDKit_git/Code/GraphMol/SmilesParse/smarts.tab.cpp:492:14: note: the first difference of corresponding definitions is field 'yyss_alloc' /scratch/RDKit_git/Code/GraphMol/SmilesParse/smiles.tab.cpp:489:14: note: a field of same name but different type is defined in another translation unit [ 20%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB 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Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o -MF CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o.d -o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/ShapeUtils.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/ShapeUtils.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 20%] Linking CXX shared library ../../../lib/libRDKitShapeHelpers.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/ShapeHelpers.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitShapeHelpers.so.1 -o ../../../lib/libRDKitShapeHelpers.so.1.2023.03.2 CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitShapeHelpers.so.1.2023.03.2 ../../../lib/libRDKitShapeHelpers.so.1 ../../../lib/libRDKitShapeHelpers.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 20%] Built target ShapeHelpers /usr/bin/gmake -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 20%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o -MF CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o.d -o CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog/MolCatalogEntry.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog/MolCatalogEntry.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 20%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o -MF CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o.d -o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog/MolCatalogParams.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog/MolCatalogParams.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 20%] Linking CXX shared library ../../../lib/libRDKitMolCatalog.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolCatalog.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitMolCatalog.so.1 -o ../../../lib/libRDKitMolCatalog.so.1.2023.03.2 CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolCatalog.so.1.2023.03.2 ../../../lib/libRDKitMolCatalog.so.1 ../../../lib/libRDKitMolCatalog.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 20%] Built target MolCatalog /usr/bin/gmake -f Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/build.make Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/build.make Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 20%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/CIPMol.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/CIPMol.cpp.o -MF CMakeFiles/CIPLabeler.dir/CIPMol.cpp.o.d -o CMakeFiles/CIPLabeler.dir/CIPMol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/CIPMol.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/CIPMol.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1 ../../../lib/libRDKitSmilesParse.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 20%] Built target SmilesParse /usr/bin/gmake -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 20%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNParse.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNParse.cpp.o -MF CMakeFiles/SLNParse.dir/SLNParse.cpp.o.d -o CMakeFiles/SLNParse.dir/SLNParse.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse/SLNParse.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse/SLNParse.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 20%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/CIPLabeler.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/CIPLabeler.cpp.o -MF CMakeFiles/CIPLabeler.dir/CIPLabeler.cpp.o.d -o CMakeFiles/CIPLabeler.dir/CIPLabeler.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/CIPLabeler.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/CIPLabeler.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 20%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Mancude.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Mancude.cpp.o -MF CMakeFiles/CIPLabeler.dir/Mancude.cpp.o.d -o CMakeFiles/CIPLabeler.dir/Mancude.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/Mancude.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/Mancude.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 20%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o -MF CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o.d -o CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse/SLNAttribs.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse/SLNAttribs.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 21%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Digraph.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Digraph.cpp.o -MF CMakeFiles/CIPLabeler.dir/Digraph.cpp.o.d -o CMakeFiles/CIPLabeler.dir/Digraph.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/Digraph.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/Digraph.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 21%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Node.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Node.cpp.o -MF CMakeFiles/CIPLabeler.dir/Node.cpp.o.d -o CMakeFiles/CIPLabeler.dir/Node.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/Node.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/Node.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 21%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/sln.tab.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/sln.tab.cpp.o -MF CMakeFiles/SLNParse.dir/sln.tab.cpp.o.d -o CMakeFiles/SLNParse.dir/sln.tab.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse/sln.tab.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse/sln.tab.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 21%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Edge.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Edge.cpp.o -MF CMakeFiles/CIPLabeler.dir/Edge.cpp.o.d -o CMakeFiles/CIPLabeler.dir/Edge.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/Edge.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/Edge.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 21%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Sort.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Sort.cpp.o -MF CMakeFiles/CIPLabeler.dir/Sort.cpp.o.d -o CMakeFiles/CIPLabeler.dir/Sort.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/Sort.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/Sort.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 21%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/configs/Configuration.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD 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CMakeFiles/CIPLabeler.dir/configs/Configuration.cpp.o.d -o CMakeFiles/CIPLabeler.dir/configs/Configuration.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/configs/Configuration.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/configs/Configuration.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 21%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/configs/Sp2Bond.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/configs/Sp2Bond.cpp.o -MF CMakeFiles/CIPLabeler.dir/configs/Sp2Bond.cpp.o.d -o CMakeFiles/CIPLabeler.dir/configs/Sp2Bond.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/configs/Sp2Bond.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/configs/Sp2Bond.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 21%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/lex.yysln.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic 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CMakeFiles/CIPLabeler.dir/configs/Tetrahedral.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/configs/Tetrahedral.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/configs/Tetrahedral.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 21%] Linking CXX shared library ../../../lib/libRDKitSLNParse.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/SLNParse.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitSLNParse.so.1 -o ../../../lib/libRDKitSLNParse.so.1.2023.03.2 CMakeFiles/SLNParse.dir/SLNParse.cpp.o CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o CMakeFiles/SLNParse.dir/sln.tab.cpp.o CMakeFiles/SLNParse.dir/lex.yysln.cpp.o ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.78.0 [ 21%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule1a.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB 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Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule1a.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule1a.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule1a.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule1a.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule1a.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 22%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule1b.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule1b.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule1b.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule1b.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule1b.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule1b.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 22%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule2.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule2.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule2.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule2.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule2.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule2.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSLNParse.so.1.2023.03.2 ../../../lib/libRDKitSLNParse.so.1 ../../../lib/libRDKitSLNParse.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 22%] Built target SLNParse /usr/bin/gmake -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 22%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/rdqueries.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdqueries_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/rdqueries.cpp.o -MF CMakeFiles/rdqueries.dir/rdqueries.cpp.o.d -o CMakeFiles/rdqueries.dir/rdqueries.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/rdqueries.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/rdqueries.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 22%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule3.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule3.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule3.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule3.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule3.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule3.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 22%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule4a.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule4a.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule4a.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule4a.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule4a.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule4a.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 22%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule4b.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule4b.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule4b.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule4b.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule4b.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule4b.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 22%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/Queries.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdqueries_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/Queries.cpp.o -MF CMakeFiles/rdqueries.dir/Queries.cpp.o.d -o CMakeFiles/rdqueries.dir/Queries.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/Queries.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/Queries.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 22%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule4c.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule4c.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule4c.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule4c.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule4c.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule4c.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 22%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule5.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule5.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule5.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule5.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule5.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule5.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 22%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule5New.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule5New.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule5New.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule5New.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule5New.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule5New.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 22%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule6.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule6.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule6.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule6.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule6.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule6.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 23%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/SequenceRule.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/SequenceRule.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/SequenceRule.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/SequenceRule.cpp.o -c 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-Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitCIPLabeler.so.1 -o ../../../lib/libRDKitCIPLabeler.so.1.2023.03.2 CMakeFiles/CIPLabeler.dir/CIPMol.cpp.o CMakeFiles/CIPLabeler.dir/CIPLabeler.cpp.o CMakeFiles/CIPLabeler.dir/Mancude.cpp.o CMakeFiles/CIPLabeler.dir/Digraph.cpp.o CMakeFiles/CIPLabeler.dir/Node.cpp.o CMakeFiles/CIPLabeler.dir/Edge.cpp.o CMakeFiles/CIPLabeler.dir/Sort.cpp.o CMakeFiles/CIPLabeler.dir/configs/Configuration.cpp.o CMakeFiles/CIPLabeler.dir/configs/Sp2Bond.cpp.o CMakeFiles/CIPLabeler.dir/configs/Tetrahedral.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule1a.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule1b.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule2.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule3.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule4a.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule4b.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule4c.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule5.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule5New.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule6.cpp.o CMakeFiles/CIPLabeler.dir/rules/SequenceRule.cpp.o ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.78.0 cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitCIPLabeler.so.1.2023.03.2 ../../../lib/libRDKitCIPLabeler.so.1 ../../../lib/libRDKitCIPLabeler.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 23%] Built target CIPLabeler /usr/bin/gmake -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 23%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdtrajectory_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o -MF CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o.d -o CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/Trajectory.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/Trajectory.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 23%] Linking CXX shared module ../../../rdkit/Chem/rdqueries.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdqueries.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../rdkit/Chem/rdqueries.so CMakeFiles/rdqueries.dir/rdqueries.cpp.o CMakeFiles/rdqueries.dir/Queries.cpp.o ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 23%] Built target rdqueries /usr/bin/gmake -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 23%] Building CXX object Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ChemicalFeatures/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemicalFeatures_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong 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Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o -MF CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o.d -o CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/rdTrajectory.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/rdTrajectory.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 23%] Building CXX object Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ChemicalFeatures/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemicalFeatures_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o -MF CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o.d -o CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ChemicalFeatures/Wrap/FreeChemicalFeature.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ChemicalFeatures/Wrap/FreeChemicalFeature.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 23%] Linking CXX shared module ../../../rdkit/Chem/rdtrajectory.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdtrajectory.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../rdkit/Chem/rdtrajectory.so CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o ../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 23%] Built target rdtrajectory /usr/bin/gmake -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make 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-Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o -MF CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o.d -o CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Substruct/SubstructMatch.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Substruct/SubstructMatch.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 23%] Linking CXX shared module ../../../rdkit/Chem/rdChemicalFeatures.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ChemicalFeatures/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdChemicalFeatures.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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-grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o -MF CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o.d -o CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Optimizer/BFGSOpt.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Optimizer/BFGSOpt.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 23%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/LinearSearch.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Optimizer && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DOptimizer_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_OPTIMIZER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/LinearSearch.cpp.o -MF CMakeFiles/Optimizer.dir/LinearSearch.cpp.o.d -o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Optimizer/LinearSearch.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Optimizer/LinearSearch.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 23%] Linking CXX shared library ../../../lib/libRDKitOptimizer.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_link_script CMakeFiles/Optimizer.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong 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/builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../../lib/libRDKitOptimizer.so.1 ../../../lib/libRDKitOptimizer.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 23%] Built target Optimizer /usr/bin/gmake -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CMakeFiles/graphmolcpTest.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 23%] Building CXX object Code/GraphMol/CMakeFiles/graphmolcpTest.dir/cptest.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security 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Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o -MF CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o.d -o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Substruct/SubstructUtils.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Substruct/SubstructUtils.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 23%] Linking CXX executable graphmolcpTest cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolcpTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/graphmolcpTest.dir/cptest.cpp.o -o graphmolcpTest ../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 23%] Built target graphmolcpTest /usr/bin/gmake -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd 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-DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/graphmolIterTest.dir/itertest.cpp.o -MF CMakeFiles/graphmolIterTest.dir/itertest.cpp.o.d -o CMakeFiles/graphmolIterTest.dir/itertest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/itertest.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/itertest.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 23%] Linking CXX shared library ../../../lib/libRDKitSubstructMatch.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/SubstructMatch.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitSubstructMatch.so.1 -o ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 23%] Linking CXX executable graphmolIterTest cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolIterTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/graphmolIterTest.dir/itertest.cpp.o -o graphmolIterTest ../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 23%] Built target graphmolIterTest /usr/bin/gmake -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 23%] Building CXX object Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o -MF CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o.d -o CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/memtest1.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/memtest1.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1 ../../../lib/libRDKitSubstructMatch.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 23%] Built target SubstructMatch /usr/bin/gmake -f Code/GraphMol/CMakeFiles/test-valgrind.dir/build.make Code/GraphMol/CMakeFiles/test-valgrind.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CMakeFiles/test-valgrind.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/CMakeFiles/test-valgrind.dir/build.make Code/GraphMol/CMakeFiles/test-valgrind.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 23%] Building CXX object Code/GraphMol/CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o -MF 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-Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o -o graphmolMemTest1 ../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 23%] Built target graphmolMemTest1 /usr/bin/gmake -f Code/GraphMol/CMakeFiles/moliteratorTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/moliteratorTestsCatch.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CMakeFiles/moliteratorTestsCatch.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/CMakeFiles/moliteratorTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/moliteratorTestsCatch.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 23%] Building CXX object Code/GraphMol/CMakeFiles/moliteratorTestsCatch.dir/catch_moliterators.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/moliteratorTestsCatch.dir/catch_moliterators.cpp.o -MF CMakeFiles/moliteratorTestsCatch.dir/catch_moliterators.cpp.o.d -o CMakeFiles/moliteratorTestsCatch.dir/catch_moliterators.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/catch_moliterators.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/catch_moliterators.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 23%] Linking CXX executable test-valgrind cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-valgrind.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o" -o test-valgrind ../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 23%] Built target test-valgrind /usr/bin/gmake -f Code/GraphMol/CMakeFiles/queryTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/queryTestsCatch.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 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-I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/queryTestsCatch.dir/catch_queries.cpp.o -MF CMakeFiles/queryTestsCatch.dir/catch_queries.cpp.o.d -o CMakeFiles/queryTestsCatch.dir/catch_queries.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/catch_queries.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/catch_queries.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 24%] Linking CXX executable moliteratorTestsCatch cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/moliteratorTestsCatch.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/moliteratorTestsCatch.dir/catch_moliterators.cpp.o -o moliteratorTestsCatch ../RDGeneral/librdkitCatch.so ../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 24%] Built target moliteratorTestsCatch /usr/bin/gmake -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 24%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/test2.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 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/builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/smatest.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/smatest.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 24%] Linking CXX executable smiTest2 cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/smiTest2.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now 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../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 25%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o -MF CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o.d -o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/AtomPairs.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/AtomPairs.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 25%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MACCS.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MACCS.cpp.o -MF CMakeFiles/Fingerprints.dir/MACCS.cpp.o.d -o CMakeFiles/Fingerprints.dir/MACCS.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/MACCS.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/MACCS.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 25%] Built target smaTest1 /usr/bin/gmake -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 25%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/Filters.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/Filters.cpp.o -MF CMakeFiles/FilterCatalog.dir/Filters.cpp.o.d -o CMakeFiles/FilterCatalog.dir/Filters.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog/Filters.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog/Filters.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 26%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o -MF CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o.d -o CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog/FilterCatalog.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog/FilterCatalog.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 26%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MHFP.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MHFP.cpp.o -MF CMakeFiles/Fingerprints.dir/MHFP.cpp.o.d -o CMakeFiles/Fingerprints.dir/MHFP.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/MHFP.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/MHFP.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 26%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o -MF CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o.d -o CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 26%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o -MF CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o.d -o CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog/FilterCatalogEntry.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog/FilterCatalogEntry.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 26%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o -MF CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o.d -o CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 26%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o -MF CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o.d -o CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/MorganGenerator.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/MorganGenerator.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 26%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalogRunner.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalogRunner.cpp.o -MF CMakeFiles/FilterCatalog.dir/FilterCatalogRunner.cpp.o.d -o CMakeFiles/FilterCatalog.dir/FilterCatalogRunner.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog/FilterCatalogRunner.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog/FilterCatalogRunner.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 26%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o -MF CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o.d -o CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 26%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o -MF CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o.d -o CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog/FilterMatchers.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog/FilterMatchers.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 26%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o -MF CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o.d -o CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/FingerprintUtil.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/FingerprintUtil.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 26%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o -MF CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o.d -o CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog/FunctionalGroupHierarchy.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog/FunctionalGroupHierarchy.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 27%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o -MF CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o.d -o CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 27%] Linking CXX shared library ../../../lib/libRDKitFilterCatalog.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/FilterCatalog.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitFilterCatalog.so.1 -o ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 CMakeFiles/FilterCatalog.dir/Filters.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalogRunner.cpp.o CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 27%] Linking CXX shared library ../../../lib/libRDKitFingerprints.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/Fingerprints.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitFingerprints.so.1 -o ../../../lib/libRDKitFingerprints.so.1.2023.03.2 CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o CMakeFiles/Fingerprints.dir/MACCS.cpp.o CMakeFiles/Fingerprints.dir/MHFP.cpp.o CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1 ../../../lib/libRDKitFilterCatalog.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 27%] Built target FilterCatalog /usr/bin/gmake -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs 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-I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/test1.cpp.o -MF CMakeFiles/testSubgraphs1.dir/test1.cpp.o.d -o CMakeFiles/testSubgraphs1.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs/test1.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs/test1.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 27%] Linking CXX executable testSubgraphs1 cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubgraphs1.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testSubgraphs1.dir/test1.cpp.o -o testSubgraphs1 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 27%] Built target testSubgraphs1 /usr/bin/gmake -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 27%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/test2.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/test2.cpp.o -MF CMakeFiles/testSubgraphs2.dir/test2.cpp.o.d -o CMakeFiles/testSubgraphs2.dir/test2.cpp.o -c 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-I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o -MF CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o.d -o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog/FragCatalogEntry.cpp annobin: 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o -MF CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o.d -o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog/FragCatParams.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog/FragCatParams.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 29%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o -MF CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o.d -o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog/FragFPGenerator.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog/FragFPGenerator.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 29%] Linking CXX shared library ../../../lib/libRDKitFragCatalog.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/FragCatalog.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitFragCatalog.so.1 -o ../../../lib/libRDKitFragCatalog.so.1.2023.03.2 CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFragCatalog.so.1.2023.03.2 ../../../lib/libRDKitFragCatalog.so.1 ../../../lib/libRDKitFragCatalog.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 29%] Built target FragCatalog /usr/bin/gmake -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 30%] Building CXX object Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdFingerprintGenerator_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o -MF CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o.d -o CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 30%] Linking CXX shared module ../../../../rdkit/Chem/rdfiltercatalog.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdfiltercatalog.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/rdfiltercatalog.so CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o ../../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../../lib/libRDKitCatalogs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp: In function 'boost::python::api::object RDKit::FingerprintWrapper::getBitPathsHelper(const RDKit::AdditionalOutput&)': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp:381:19: warning: redundant move in return statement [-Wredundant-move] 381 | return std::move(res); | ~~~~~~~~~^~~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp:381:19: note: remove 'std::move' call /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp: In function 'boost::python::api::object RDKit::FingerprintWrapper::getBitInfoMapHelper(const RDKit::AdditionalOutput&)': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp:396:19: warning: redundant move in return statement [-Wredundant-move] 396 | return std::move(res); | ~~~~~~~~~^~~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp:396:19: note: remove 'std::move' call gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 30%] Built target rdfiltercatalog /usr/bin/gmake -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 30%] Building CXX object Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/MHFPWrapper.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMHFPFingerprint_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/MHFPWrapper.cpp.o -MF CMakeFiles/rdMHFPFingerprint.dir/MHFPWrapper.cpp.o.d -o CMakeFiles/rdMHFPFingerprint.dir/MHFPWrapper.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap/MHFPWrapper.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap/MHFPWrapper.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 30%] Linking CXX shared module ../../../../rdkit/Chem/rdFingerprintGenerator.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdFingerprintGenerator.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/rdFingerprintGenerator.so CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o ../../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 30%] Built target rdFingerprintGenerator /usr/bin/gmake -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 30%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/test1.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/test1.cpp.o -MF CMakeFiles/testPartialCharges.dir/test1.cpp.o.d -o CMakeFiles/testPartialCharges.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges/test1.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges/test1.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 30%] Linking CXX executable testPartialCharges cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_link_script CMakeFiles/testPartialCharges.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testPartialCharges.dir/test1.cpp.o -o testPartialCharges ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 30%] Built target testPartialCharges /usr/bin/gmake -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 30%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o -MF CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o.d -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 30%] Linking CXX shared module ../../../../rdkit/Chem/rdMHFPFingerprint.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMHFPFingerprint.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/rdMHFPFingerprint.so CMakeFiles/rdMHFPFingerprint.dir/MHFPWrapper.cpp.o ../../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 30%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o -MF CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o.d -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined In member function 'construct', inlined from 'construct' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from '_M_create_node' at /usr/include/c++/13/bits/stl_list.h:713:33, inlined from '_M_insert' at /usr/include/c++/13/bits/stl_list.h:2005:32, inlined from 'push_back' at /usr/include/c++/13/bits/stl_list.h:1306:24, inlined from 'push_dispatch' at /usr/include/boost/pending/container_traits.hpp:574:20, inlined from 'push' at /usr/include/boost/pending/container_traits.hpp:606:29, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:1073:29, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:2258:20, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:2266:20, inlined from 'copy_impl' at /usr/include/boost/graph/detail/adjacency_list.hpp:2193:27, inlined from '__ct ' at /usr/include/boost/graph/detail/adjacency_list.hpp:2118:69, inlined from '__ct ' at /usr/include/boost/graph/adjacency_list.hpp:321:65, inlined from '__ct_base ' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ROMol.h:348:9: /usr/include/c++/13/bits/new_allocator.h:187:11: warning: 'p' may be used uninitialized [-Wmaybe-uninitialized] 187 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^ /usr/include/boost/graph/detail/adjacency_list.hpp: In member function '__ct_base ': /usr/include/boost/graph/detail/adjacency_list.hpp:2265:41: note: 'p' was declared here 2265 | typename Config::edge_property_type p; | ^ [ 31%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -MF CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o.d -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 31%] Built target rdMHFPFingerprint /usr/bin/gmake -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 31%] Building CXX object Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdShapeHelpers_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o -MF CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o.d -o CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 31%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o -MF CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o.d -o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/FeatureParser.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/FeatureParser.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 31%] Linking CXX shared module ../../../../rdkit/Chem/rdShapeHelpers.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdShapeHelpers.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/rdShapeHelpers.so CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o ../../../../lib/libRDKitShapeHelpers.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl In member function '__ct ', inlined from 'getUnionOfTwoBox' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:98:67: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/point.h:66:31: warning: 'MEM [(double *)&D.12526 + 32B]' may be used uninitialized [-Wmaybe-uninitialized] 66 | : Point(other), x(other.x), y(other.y), z(other.z) {} | ^ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp: In function 'getUnionOfTwoBox': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:98:67: note: '' declared here 98 | python::extract(box2.attr("__getitem__")(1)); | ^ In member function '__ct ', inlined from 'getUnionOfTwoBox' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:98:67: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/point.h:66:55: warning: 'MEM[(const struct Point3D &)&D.12526 + 24].z' may be used uninitialized [-Wmaybe-uninitialized] 66 | : Point(other), x(other.x), y(other.y), z(other.z) {} | ^ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp: In function 'getUnionOfTwoBox': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:98:67: note: '' declared here 98 | python::extract(box2.attr("__getitem__")(1)); | ^ In member function '__ct ', inlined from 'getUnionOfTwoBox' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:96:67: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/point.h:66:31: warning: 'MEM [(double *)&D.12522 + 32B]' may be used uninitialized [-Wmaybe-uninitialized] 66 | : Point(other), x(other.x), y(other.y), z(other.z) {} | ^ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp: In function 'getUnionOfTwoBox': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:96:67: note: '' declared here 96 | python::extract(box2.attr("__getitem__")(0)); | ^ In member function '__ct ', inlined from 'getUnionOfTwoBox' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:96:67: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/point.h:66:55: warning: 'MEM[(const struct Point3D &)&D.12522 + 24].z' may be used uninitialized [-Wmaybe-uninitialized] 66 | : Point(other), x(other.x), y(other.y), z(other.z) {} | ^ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp: In function 'getUnionOfTwoBox': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:96:67: note: '' declared here 96 | python::extract(box2.attr("__getitem__")(0)); | ^ In member function '__ct ', inlined from 'getUnionOfTwoBox' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:93:67: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/point.h:66:31: warning: 'MEM [(double *)&D.12518 + 32B]' may be used uninitialized [-Wmaybe-uninitialized] 66 | : Point(other), x(other.x), y(other.y), z(other.z) {} | ^ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp: In function 'getUnionOfTwoBox': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:93:67: note: '' declared here 93 | python::extract(box1.attr("__getitem__")(1)); | ^ In member function '__ct ', inlined from 'getUnionOfTwoBox' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:93:67: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/point.h:66:55: warning: 'MEM[(const struct Point3D &)&D.12518 + 24].z' may be used uninitialized [-Wmaybe-uninitialized] 66 | : Point(other), x(other.x), y(other.y), z(other.z) {} | ^ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp: In function 'getUnionOfTwoBox': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:93:67: note: '' declared here 93 | python::extract(box1.attr("__getitem__")(1)); | ^ In member function '__ct ', inlined from 'getUnionOfTwoBox' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:91:67: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/point.h:66:31: warning: 'MEM [(double *)&D.12514 + 32B]' may be used uninitialized [-Wmaybe-uninitialized] 66 | : Point(other), x(other.x), y(other.y), z(other.z) {} | ^ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp: In function 'getUnionOfTwoBox': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:91:67: note: '' declared here 91 | python::extract(box1.attr("__getitem__")(0)); | ^ In member function '__ct ', inlined from 'getUnionOfTwoBox' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:91:67: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/point.h:66:55: warning: 'MEM[(const struct Point3D &)&D.12514 + 24].z' may be used uninitialized [-Wmaybe-uninitialized] 66 | : Point(other), x(other.x), y(other.y), z(other.z) {} | ^ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp: In function 'getUnionOfTwoBox': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:91:67: note: '' declared here 91 | python::extract(box1.attr("__getitem__")(0)); | ^ [ 31%] Linking CXX shared library ../../../lib/libRDKitMolChemicalFeatures.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolChemicalFeatures.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitMolChemicalFeatures.so.1 -o ../../../lib/libRDKitMolChemicalFeatures.so.1.2023.03.2 CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 31%] Built target rdShapeHelpers /usr/bin/gmake -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 31%] Building CXX object Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolCatalog_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o -MF CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o.d -o CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog/Wrap/rdMolCatalog.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog/Wrap/rdMolCatalog.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_symlink_library 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/Wrap/CMakeFiles/rdCIPLabeler.dir/rdCIPLabeler.cpp.o -MF CMakeFiles/rdCIPLabeler.dir/rdCIPLabeler.cpp.o.d -o CMakeFiles/rdCIPLabeler.dir/rdCIPLabeler.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/Wrap/rdCIPLabeler.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/Wrap/rdCIPLabeler.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 32%] Linking CXX shared module 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CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o.d -o CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ReducedGraphs/ReducedGraphs.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ReducedGraphs/ReducedGraphs.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 32%] Linking CXX shared module ../../../../rdkit/Chem/rdMolCatalog.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolCatalog.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/rdMolCatalog.so CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o ../../../../lib/libRDKitMolCatalog.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../../lib/libRDKitCatalogs.so.1.2023.03.2 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 32%] Built target rdMolCatalog /usr/bin/gmake -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 33%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/test.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/test.cpp.o -MF CMakeFiles/testSLNParse.dir/test.cpp.o.d -o CMakeFiles/testSLNParse.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse/test.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse/test.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 34%] Linking CXX shared library ../../../lib/libRDKitReducedGraphs.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/ReducedGraphs.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitReducedGraphs.so.1 -o ../../../lib/libRDKitReducedGraphs.so.1.2023.03.2 CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitReducedGraphs.so.1.2023.03.2 ../../../lib/libRDKitReducedGraphs.so.1 ../../../lib/libRDKitReducedGraphs.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 34%] Built target ReducedGraphs /usr/bin/gmake -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse/Wrap 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-DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSLNParse_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o -MF CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o.d -o CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o -c 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-Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/rdSLNParse.so CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o ../../../../lib/libRDKitSLNParse.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 34%] Built target rdSLNParse /usr/bin/gmake -f Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/build.make Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Abbreviations /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Abbreviations /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/build.make Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 34%] Building CXX 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Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 35%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/RDDepictor.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Depictor && /usr/bin/g++ 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-fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitAbbreviations.so.1 -o ../../../lib/libRDKitAbbreviations.so.1.2023.03.2 CMakeFiles/Abbreviations.dir/Abbreviations.cpp.o CMakeFiles/Abbreviations.dir/AbbreviationsUtils.cpp.o ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Abbreviations && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitAbbreviations.so.1.2023.03.2 ../../../lib/libRDKitAbbreviations.so.1 ../../../lib/libRDKitAbbreviations.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 35%] Built target Abbreviations /usr/bin/gmake -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Optimizer 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not defined [ 35%] Linking CXX executable testOptimizer cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_link_script CMakeFiles/testOptimizer.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o -o testOptimizer 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-I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/ForceField.cpp.o -MF CMakeFiles/ForceField.dir/ForceField.cpp.o.d -o CMakeFiles/ForceField.dir/ForceField.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/ForceField.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/ForceField.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 35%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Depictor && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDepictor_EXPORTS -DRDKIT_DEPICTOR_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection 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/builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/ForceField.cpp:289:24: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Optimizer/BFGSOpt.h:273:36: warning: 'finalForce' may be used uninitialized [-Wmaybe-uninitialized] 273 | double term = std::max(funcVal * gradScale, 1.0); | ~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/ForceField.cpp: In member function 'ForceFields::ForceField::minimize(unsigned int, std::vector >*, unsigned int, double, double)': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/ForceField.cpp:281:10: note: 'finalForce' was declared here 281 | double finalForce; | ^~~~~~~~~~ [ 35%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o -MF CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o.d -o CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/UFF/BondStretch.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/UFF/BondStretch.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 35%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField && 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-I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o -MF CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o.d -o CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/UFF/Inversion.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/UFF/Inversion.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 35%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DepictUtils.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Depictor && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDepictor_EXPORTS -DRDKIT_DEPICTOR_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DepictUtils.cpp.o -MF CMakeFiles/Depictor.dir/DepictUtils.cpp.o.d -o CMakeFiles/Depictor.dir/DepictUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Depictor/DepictUtils.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Depictor/DepictUtils.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 35%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o -MF CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o.d -o CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o -c 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o -MF CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o.d -o CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/UFF/DistanceConstraint.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/UFF/DistanceConstraint.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 36%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC 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-I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/Templates.cpp.o -MF CMakeFiles/Depictor.dir/Templates.cpp.o.d -o CMakeFiles/Depictor.dir/Templates.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Depictor/Templates.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Depictor/Templates.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 36%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o -MF CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o.d -o CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/UFF/TorsionConstraint.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/UFF/TorsionConstraint.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 36%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o -MF CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o.d -o CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/UFF/PositionConstraint.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/UFF/PositionConstraint.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 36%] Linking CXX shared library ../../../lib/libRDKitDepictor.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_link_script CMakeFiles/Depictor.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitDepictor.so.1 -o ../../../lib/libRDKitDepictor.so.1.2023.03.2 CMakeFiles/Depictor.dir/RDDepictor.cpp.o CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o CMakeFiles/Depictor.dir/DepictUtils.cpp.o CMakeFiles/Depictor.dir/Templates.cpp.o ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 36%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Params.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/UFF/Params.cpp.o -MF CMakeFiles/ForceField.dir/UFF/Params.cpp.o.d -o CMakeFiles/ForceField.dir/UFF/Params.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/UFF/Params.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/UFF/Params.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 36%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o -MF CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o.d -o CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/MMFF/AngleBend.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/MMFF/AngleBend.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 36%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o -MF CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o.d -o CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/MMFF/BondStretch.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/MMFF/BondStretch.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1 ../../../lib/libRDKitDepictor.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 36%] Built target Depictor /usr/bin/gmake -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 36%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolAlign_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLALIGN_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 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CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/MMFF/StretchBend.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/MMFF/StretchBend.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 36%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches 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-DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o -MF CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o.d -o CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/MMFF/TorsionAngle.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/MMFF/TorsionAngle.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 37%] Linking CXX shared library ../../../lib/libRDKitMolAlign.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolAlign.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitMolAlign.so.1 -o ../../../lib/libRDKitMolAlign.so.1.2023.03.2 CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 37%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o -MF CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o.d -o CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/MMFF/Nonbonded.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/MMFF/Nonbonded.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../lib/libRDKitMolAlign.so.1 ../../../lib/libRDKitMolAlign.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 37%] Built target MolAlign /usr/bin/gmake -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 38%] Building CXX object Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o cd 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Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o -MF CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o.d -o CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/MMFF/TorsionConstraint.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/MMFF/TorsionConstraint.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 38%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o -MF CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o.d -o CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/MMFF/PositionConstraint.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/MMFF/PositionConstraint.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 38%] Linking CXX executable graphmolqueryTest cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolqueryTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o -o graphmolqueryTest ../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 38%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Params.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Params.cpp.o -MF CMakeFiles/ForceField.dir/MMFF/Params.cpp.o.d -o CMakeFiles/ForceField.dir/MMFF/Params.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/MMFF/Params.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/MMFF/Params.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 38%] Built target graphmolqueryTest /usr/bin/gmake -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Depictor/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Depictor/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 38%] Building CXX object Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Depictor/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdDepictor_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o -MF CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o.d -o CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 38%] Linking CXX shared library ../../lib/libRDKitForceField.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField && /usr/bin/cmake -E cmake_link_script CMakeFiles/ForceField.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitForceField.so.1 -o ../../lib/libRDKitForceField.so.1.2023.03.2 CMakeFiles/ForceField.dir/ForceField.cpp.o CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/Params.cpp.o CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/Params.cpp.o ../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl In function 'minimize', inlined from 'minimize' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/ForceField.cpp:289:24: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Optimizer/BFGSOpt.h:273:36: warning: 'finalForce' may be used uninitialized [-Wmaybe-uninitialized] 273 | double term = std::max(funcVal * gradScale, 1.0); | ^ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/ForceField.cpp: In member function 'minimize': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/ForceField.cpp:281:10: note: 'finalForce' was declared here 281 | double finalForce; | ^ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp: In function 'void RDDepict::setPreferCoordGen(bool)': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp:154:29: warning: unused parameter 'value' [-Wunused-parameter] 154 | void setPreferCoordGen(bool value) { | ~~~~~^~~~~ [ 39%] Linking CXX shared module ../../../../rdkit/Chem/rdDepictor.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Depictor/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdDepictor.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/rdDepictor.so CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitForceField.so.1.2023.03.2 ../../lib/libRDKitForceField.so.1 ../../lib/libRDKitForceField.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 39%] Built target ForceField /usr/bin/gmake -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 39%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o -MF CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o.d -o CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/Wrap/rdMolChemicalFeatures.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/Wrap/rdMolChemicalFeatures.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 39%] Built target rdDepictor /usr/bin/gmake -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 39%] Building CXX object Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/test1.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ReducedGraphs && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT 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/builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/Wrap/ChemicalFeatureUtils.cpp:45:19: warning: redundant move in return statement [-Wredundant-move] 45 | return std::move(res); | ~~~~~~~~~^~~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/Wrap/ChemicalFeatureUtils.cpp:45:19: note: remove 'std::move' call [ 41%] Linking CXX shared module ../../../../rdkit/Chem/rdMolChemicalFeatures.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolChemicalFeatures.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection 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../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 41%] Built target rdMolChemicalFeatures /usr/bin/gmake -f External/INCHI-API/CMakeFiles/RDInchiLib.dir/build.make External/INCHI-API/CMakeFiles/RDInchiLib.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2023_03_2 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-I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT External/INCHI-API/CMakeFiles/RDInchiLib.dir/inchi.cpp.o -MF CMakeFiles/RDInchiLib.dir/inchi.cpp.o.d -o CMakeFiles/RDInchiLib.dir/inchi.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/External/INCHI-API/inchi.cpp annobin: 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'/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 41%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemTransforms && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DChemTransforms_EXPORTS -DRDKIT_CHEMTRANSFORMS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto 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../../lib/libRDKitRDInchiLib.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/External/INCHI-API && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDInchiLib.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitRDInchiLib.so.1 -o ../../lib/libRDKitRDInchiLib.so.1.2023.03.2 CMakeFiles/RDInchiLib.dir/inchi.cpp.o /usr/lib64/libinchi.so ../../lib/libRDKitDepictor.so.1.2023.03.2 ../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/External/INCHI-API && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDInchiLib.so.1.2023.03.2 ../../lib/libRDKitRDInchiLib.so.1 ../../lib/libRDKitRDInchiLib.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 41%] Built target RDInchiLib /usr/bin/gmake -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make 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Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic 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-I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o -MF CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o.d -o CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/UFF/Builder.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/UFF/Builder.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 43%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong 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/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitChemTransforms.so.1 -o ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 43%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o -MF CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o.d -o CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/MMFF/Builder.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/MMFF/Builder.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1 ../../../lib/libRDKitChemTransforms.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 43%] Built target ChemTransforms /usr/bin/gmake -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 44%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/CDXMLParser.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK 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Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/CDXMLParser.cpp.o -MF CMakeFiles/FileParsers.dir/CDXMLParser.cpp.o.d -o CMakeFiles/FileParsers.dir/CDXMLParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/CDXMLParser.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/CDXMLParser.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 44%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o -MF CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o.d -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 44%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o -MF CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o.d -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 44%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitForceFieldHelpers.so.1 -o ../../../lib/libRDKitForceFieldHelpers.so.1.2023.03.2 CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitForceField.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 44%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileParser.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK 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-Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileParser.cpp.o -MF CMakeFiles/FileParsers.dir/MolFileParser.cpp.o.d -o CMakeFiles/FileParsers.dir/MolFileParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/MolFileParser.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/MolFileParser.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitForceFieldHelpers.so.1.2023.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1 ../../../lib/libRDKitForceFieldHelpers.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 44%] Built target ForceFieldHelpers /usr/bin/gmake -f External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build.make External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/External/INCHI-API/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/External/INCHI-API/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build.make External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 45%] Building CXX object External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/pyInchi.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/External/INCHI-API/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK 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../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 45%] Built target rdinchi /usr/bin/gmake -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DistGeom/CMakeFiles/DistGeometry.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 45%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DistGeom && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe 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-D_GLIBCXX_ASSERTIONS not defined [ 45%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DistGeom && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic 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../../lib/libRDKitForceFieldHelpers.so.1.2023.03.2 ../../lib/libRDKitForceField.so.1.2023.03.2 ../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.78.0 [ 45%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolSGroupParsing.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD 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CMakeFiles/FileParsers.dir/MolSGroupParsing.cpp.o.d -o CMakeFiles/FileParsers.dir/MolSGroupParsing.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/MolSGroupParsing.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/MolSGroupParsing.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DistGeom && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitDistGeometry.so.1.2023.03.2 ../../lib/libRDKitDistGeometry.so.1 ../../lib/libRDKitDistGeometry.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 45%] Built target DistGeometry /usr/bin/gmake -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 45%] Building CXX object Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/ForceField.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT 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-D_GLIBCXX_ASSERTIONS not defined [ 45%] Linking CXX shared module ../../../rdkit/ForceField/rdForceField.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdForceField.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now 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Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DistGeom/CMakeFiles/testDistGeom.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 46%] Building CXX object Code/DistGeom/CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DistGeom && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB 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CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o.d -o CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DistGeom/testDistGeom.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DistGeom/testDistGeom.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 46%] Linking CXX executable testDistGeom cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DistGeom && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDistGeom.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra 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Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DistGeom.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DistGeom/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDistGeom_EXPORTS -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection 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CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o.d -o CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/MolFileWriter.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/MolFileWriter.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 46%] Linking CXX shared module ../../../rdkit/DistanceGeometry/DistGeom.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DistGeom/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeom.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer 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../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 46%] Built target DistGeom /usr/bin/gmake -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 46%] Building CXX object Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 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CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp: In function 'boost::python::api::object RDKit::UFFConfsHelper(ROMol&, int, int, double, bool)': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp:49:19: warning: redundant move in return statement [-Wredundant-move] 49 | return std::move(pyres); | ~~~~~~~~~^~~~~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp:49:19: note: remove 'std::move' call /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp: In function 'boost::python::api::object RDKit::MMFFConfsHelper(ROMol&, int, int, std::string, double, bool)': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp:66:19: warning: redundant move in return statement [-Wredundant-move] 66 | return std::move(pyres); | ~~~~~~~~~^~~~~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp:66:19: note: remove 'std::move' call /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp: In function 'boost::python::api::object RDKit::FFConfsHelper(ROMol&, ForceFields::PyForceField&, int, int)': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp:86:19: warning: redundant move in return statement [-Wredundant-move] 86 | return std::move(pyres); | ~~~~~~~~~^~~~~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp:86:19: note: remove 'std::move' call [ 46%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o -MF CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o.d -o CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/ForwardSDMolSupplier.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/ForwardSDMolSupplier.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 46%] Linking CXX shared module ../../../../rdkit/Chem/rdForceFieldHelpers.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdForceFieldHelpers.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/rdForceFieldHelpers.so CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o ../../../../lib/libRDKitForceFieldHelpers.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitForceField.so.1.2023.03.2 ../../../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 46%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o -MF CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o.d -o CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/SDMolSupplier.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/SDMolSupplier.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 46%] Built target rdForceFieldHelpers /usr/bin/gmake -f Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 46%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/O3AAlignMolecules.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DO3AAlign_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLALIGN_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/O3AAlignMolecules.cpp.o -MF CMakeFiles/O3AAlign.dir/O3AAlignMolecules.cpp.o.d -o CMakeFiles/O3AAlign.dir/O3AAlignMolecules.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign/O3AAlignMolecules.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign/O3AAlignMolecules.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 47%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDWriter.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDWriter.cpp.o -MF CMakeFiles/FileParsers.dir/SDWriter.cpp.o.d -o CMakeFiles/FileParsers.dir/SDWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/SDWriter.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/SDWriter.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 47%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o -MF CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o.d -o CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/SmilesMolSupplier.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/SmilesMolSupplier.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 47%] Linking CXX shared library ../../../lib/libRDKitO3AAlign.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/O3AAlign.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitO3AAlign.so.1 -o ../../../lib/libRDKitO3AAlign.so.1.2023.03.2 CMakeFiles/O3AAlign.dir/O3AAlignMolecules.cpp.o ../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitForceField.so.1.2023.03.2 ../../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitO3AAlign.so.1.2023.03.2 ../../../lib/libRDKitO3AAlign.so.1 ../../../lib/libRDKitO3AAlign.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 47%] Built target O3AAlign /usr/bin/gmake -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 47%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/rdchem.cpp.o cd 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48%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Mol.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables 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-I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/StereoGroup.cpp.o -MF CMakeFiles/rdchem.dir/StereoGroup.cpp.o.d -o CMakeFiles/rdchem.dir/StereoGroup.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/StereoGroup.cpp annobin: 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CMakeFiles/FileParsers.dir/PDBParser.cpp.o CMakeFiles/FileParsers.dir/PDBWriter.cpp.o CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o CMakeFiles/FileParsers.dir/CMLWriter.cpp.o CMakeFiles/FileParsers.dir/XYZFileWriter.cpp.o CMakeFiles/FileParsers.dir/XYZFileParser.cpp.o CMakeFiles/FileParsers.dir/MaeMolSupplier.cpp.o CMakeFiles/FileParsers.dir/MaeWriter.cpp.o CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o CMakeFiles/FileParsers.dir/SVGParser.cpp.o CMakeFiles/FileParsers.dir/PNGParser.cpp.o CMakeFiles/FileParsers.dir/MultithreadedMolSupplier.cpp.o CMakeFiles/FileParsers.dir/MultithreadedSmilesMolSupplier.cpp.o CMakeFiles/FileParsers.dir/MultithreadedSDMolSupplier.cpp.o ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 50%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/SubstanceGroup.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/SubstanceGroup.cpp.o -MF CMakeFiles/rdchem.dir/SubstanceGroup.cpp.o.d -o CMakeFiles/rdchem.dir/SubstanceGroup.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/SubstanceGroup.cpp annobin: 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Chirality.cpp.o -MF CMakeFiles/rdchem.dir/Chirality.cpp.o.d -o CMakeFiles/rdchem.dir/Chirality.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/Chirality.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/Chirality.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 50%] Linking CXX shared module ../../../rdkit/Chem/rdchem.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdchem.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../rdkit/Chem/rdchem.so CMakeFiles/rdchem.dir/rdchem.cpp.o CMakeFiles/rdchem.dir/Table.cpp.o CMakeFiles/rdchem.dir/Atom.cpp.o CMakeFiles/rdchem.dir/Bond.cpp.o CMakeFiles/rdchem.dir/Mol.cpp.o CMakeFiles/rdchem.dir/Conformer.cpp.o CMakeFiles/rdchem.dir/RingInfo.cpp.o CMakeFiles/rdchem.dir/EditableMol.cpp.o CMakeFiles/rdchem.dir/MonomerInfo.cpp.o CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o CMakeFiles/rdchem.dir/MolBundle.cpp.o CMakeFiles/rdchem.dir/StereoGroup.cpp.o CMakeFiles/rdchem.dir/SubstanceGroup.cpp.o CMakeFiles/rdchem.dir/Chirality.cpp.o ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1 ../../../lib/libRDKitFileParsers.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 50%] Built target FileParsers /usr/bin/gmake -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 50%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Crippen.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Crippen.cpp.o -MF CMakeFiles/Descriptors.dir/Crippen.cpp.o.d -o CMakeFiles/Descriptors.dir/Crippen.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors/Crippen.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors/Crippen.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined In member function '__ct ', inlined from 'dereference' at /usr/include/boost/python/stl_iterator.hpp:48:61, inlined from 'dereference' at /usr/include/boost/iterator/iterator_facade.hpp:550:32, inlined from 'operator*' at /usr/include/boost/iterator/iterator_facade.hpp:656:69, inlined from 'addBracketHelper' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/SubstanceGroup.cpp:73:14: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/point.h:66:31: warning: 'MEM[(const struct Point3D &)&D.20606 + 24].x' may be used uninitialized [-Wmaybe-uninitialized] 66 | : Point(other), x(other.x), y(other.y), z(other.z) {} | ^ /usr/include/boost/python/stl_iterator.hpp: In function 'addBracketHelper': /usr/include/boost/python/stl_iterator.hpp:48:16: note: '' declared here 48 | return extract(this->impl_.current().get())(); | ^ In member function '__ct ', inlined from 'dereference' at /usr/include/boost/python/stl_iterator.hpp:48:61, inlined from 'dereference' at /usr/include/boost/iterator/iterator_facade.hpp:550:32, inlined from 'operator*' at /usr/include/boost/iterator/iterator_facade.hpp:656:69, inlined from 'addBracketHelper' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/SubstanceGroup.cpp:73:14: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/point.h:66:43: warning: 'MEM[(const struct Point3D &)&D.20606 + 24].y' may be used uninitialized [-Wmaybe-uninitialized] 66 | : Point(other), x(other.x), y(other.y), z(other.z) {} | ^ /usr/include/boost/python/stl_iterator.hpp: In function 'addBracketHelper': /usr/include/boost/python/stl_iterator.hpp:48:16: note: '' declared here 48 | return extract(this->impl_.current().get())(); | ^ In member function '__ct ', inlined from 'dereference' at /usr/include/boost/python/stl_iterator.hpp:48:61, inlined from 'dereference' at /usr/include/boost/iterator/iterator_facade.hpp:550:32, inlined from 'operator*' at /usr/include/boost/iterator/iterator_facade.hpp:656:69, inlined from 'addBracketHelper' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/SubstanceGroup.cpp:73:14: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/point.h:66:55: warning: 'MEM[(const struct Point3D &)&D.20606 + 24].z' may be used uninitialized [-Wmaybe-uninitialized] 66 | : Point(other), x(other.x), y(other.y), z(other.z) {} | ^ /usr/include/boost/python/stl_iterator.hpp: In function 'addBracketHelper': /usr/include/boost/python/stl_iterator.hpp:48:16: note: '' declared here 48 | return extract(this->impl_.current().get())(); | ^ [ 50%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/BCUT.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/BCUT.cpp.o -MF CMakeFiles/Descriptors.dir/BCUT.cpp.o.d -o CMakeFiles/Descriptors.dir/BCUT.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors/BCUT.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors/BCUT.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 51%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK 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Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o -MF CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o.d -o CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors/MolDescriptors.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors/MolDescriptors.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 51%] Built target rdchem [ 51%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolSurf.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT 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Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Lipinski.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 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Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/DistGeomHelpers && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDistGeomHelpers_EXPORTS -DRDKIT_DISTGEOMHELPERS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables 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-D_GLIBCXX_ASSERTIONS not defined [ 51%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Property.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security 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Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security 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../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 53%] Linking CXX executable graphmolTest1 cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolTest1.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/graphmolTest1.dir/test1.cpp.o -o graphmolTest1 ../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../lib/libRDKitForceFieldHelpers.so.1.2023.03.2 ../../lib/libRDKitForceField.so.1.2023.03.2 ../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../lib/libRDKitDepictor.so.1.2023.03.2 ../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../lib/libRDKitEigenSolvers.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1 ../../../lib/libRDKitDescriptors.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 53%] Built target Descriptors /usr/bin/gmake -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 53%] Building CXX object Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong 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'/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 53%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK 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-fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o -MF CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o.d -o CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/testChirality.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/testChirality.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 53%] Linking CXX executable graphmoltestChirality cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestChirality.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o -o graphmoltestChirality ../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../lib/libRDKitDepictor.so.1.2023.03.2 ../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 53%] Built target graphmoltestChirality /usr/bin/gmake -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 53%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o -MF CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o.d -o CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/testPickler.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/testPickler.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 53%] Linking CXX executable graphmolMolOpsTest cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolMolOpsTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o -o graphmolMolOpsTest ../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../lib/libRDKitDepictor.so.1.2023.03.2 ../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so [ 53%] Linking CXX executable graphmoltestPickler cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestPickler.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o -o graphmoltestPickler ../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../lib/libRDKitDepictor.so.1.2023.03.2 ../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so In member function 'construct', inlined from 'construct' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from '_M_create_node' at /usr/include/c++/13/bits/stl_list.h:713:33, inlined from '_M_insert' at /usr/include/c++/13/bits/stl_list.h:2005:32, inlined from 'push_back' at /usr/include/c++/13/bits/stl_list.h:1306:24, inlined from 'push_dispatch' at /usr/include/boost/pending/container_traits.hpp:574:20, inlined from 'push' at /usr/include/boost/pending/container_traits.hpp:606:29, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:1073:29, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:2258:20, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:2266:20, inlined from 'copy_impl' at /usr/include/boost/graph/detail/adjacency_list.hpp:2193:27, inlined from '__ct ' at /usr/include/boost/graph/detail/adjacency_list.hpp:2118:69, inlined from '__ct ' at /usr/include/boost/graph/adjacency_list.hpp:321:65, inlined from '__ct_base ' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ROMol.h:348:9: /usr/include/c++/13/bits/new_allocator.h:187:11: warning: 'p' may be used uninitialized [-Wmaybe-uninitialized] 187 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^ /usr/include/boost/graph/detail/adjacency_list.hpp: In member function '__ct_base ': /usr/include/boost/graph/detail/adjacency_list.hpp:2265:41: note: 'p' was declared here 2265 | typename Config::edge_property_type p; | ^ gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 53%] Built target graphmoltestPickler /usr/bin/gmake -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 53%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o -MF CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o.d -o CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/testPicklerGlobalSettings.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/testPicklerGlobalSettings.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 53%] Linking CXX executable graphmoltestPicklerGlobalSetting cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestPicklerGlobalSetting.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o -o graphmoltestPicklerGlobalSetting ../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../lib/libRDKitDepictor.so.1.2023.03.2 ../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 53%] Built target graphmoltestPicklerGlobalSetting /usr/bin/gmake -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CMakeFiles/hanoiTest.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 54%] Building CXX object Code/GraphMol/CMakeFiles/hanoiTest.dir/hanoitest.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/hanoiTest.dir/hanoitest.cpp.o -MF CMakeFiles/hanoiTest.dir/hanoitest.cpp.o.d -o CMakeFiles/hanoiTest.dir/hanoitest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/hanoitest.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/hanoitest.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 54%] Built target graphmolMolOpsTest /usr/bin/gmake -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/DependInfo.cmake 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/usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o -MF CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o.d -o CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/resMolSupplierTest.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/resMolSupplierTest.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 55%] Linking CXX executable resMolSupplierTest cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/resMolSupplierTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o -o resMolSupplierTest ../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../lib/libRDKitDepictor.so.1.2023.03.2 ../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so [ 55%] Linking CXX executable hanoiTest cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/hanoiTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/hanoiTest.dir/hanoitest.cpp.o -o hanoiTest ../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../lib/libRDKitDepictor.so.1.2023.03.2 ../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 55%] Built target resMolSupplierTest /usr/bin/gmake -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CMakeFiles/molBundleTest.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 56%] Building CXX object Code/GraphMol/CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o -MF CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o.d -o CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/testMolBundle.cpp annobin: 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Code/GraphMol/CMakeFiles/testSGroup.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 56%] Building CXX object Code/GraphMol/CMakeFiles/testSGroup.dir/testSGroup.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/testSGroup.dir/testSGroup.cpp.o -MF CMakeFiles/testSGroup.dir/testSGroup.cpp.o.d -o CMakeFiles/testSGroup.dir/testSGroup.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/testSGroup.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/testSGroup.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 56%] Linking CXX executable molBundleTest cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/molBundleTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g 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/builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/catch_graphmol.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/catch_graphmol.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 56%] Linking CXX executable testSGroup cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSGroup.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testSGroup.dir/testSGroup.cpp.o -o testSGroup ../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../lib/libRDKitDepictor.so.1.2023.03.2 ../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 56%] Built target testSGroup 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object Code/GraphMol/CMakeFiles/graphmolOrganometallicsCatch.dir/catch_organometallics.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/graphmolOrganometallicsCatch.dir/catch_organometallics.cpp.o -MF CMakeFiles/graphmolOrganometallicsCatch.dir/catch_organometallics.cpp.o.d -o CMakeFiles/graphmolOrganometallicsCatch.dir/catch_organometallics.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/catch_organometallics.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/catch_organometallics.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 57%] Linking CXX executable graphmolOrganometallicsCatch cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolOrganometallicsCatch.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/graphmolOrganometallicsCatch.dir/catch_organometallics.cpp.o -o graphmolOrganometallicsCatch ../RDGeneral/librdkitCatch.so ../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../lib/libRDKitDepictor.so.1.2023.03.2 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cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CMakeFiles/graphmolSGroupCatch.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/CMakeFiles/graphmolSGroupCatch.dir/build.make Code/GraphMol/CMakeFiles/graphmolSGroupCatch.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 57%] Building CXX object Code/GraphMol/CMakeFiles/graphmolSGroupCatch.dir/catch_sgroups.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/graphmolSGroupCatch.dir/catch_sgroups.cpp.o -MF CMakeFiles/graphmolSGroupCatch.dir/catch_sgroups.cpp.o.d -o CMakeFiles/graphmolSGroupCatch.dir/catch_sgroups.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/catch_sgroups.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/catch_sgroups.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 57%] Linking CXX executable graphmolTestsCatch cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolTestsCatch.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/graphmolTestsCatch.dir/catch_graphmol.cpp.o -o graphmolTestsCatch ../RDGeneral/librdkitCatch.so ../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../lib/libRDKitDepictor.so.1.2023.03.2 ../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so In member function 'construct', inlined from 'construct' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from '_M_create_node' at /usr/include/c++/13/bits/stl_list.h:713:33, inlined from '_M_insert' at /usr/include/c++/13/bits/stl_list.h:2005:32, inlined from 'push_back' at /usr/include/c++/13/bits/stl_list.h:1306:24, inlined from 'push_dispatch' at /usr/include/boost/pending/container_traits.hpp:574:20, inlined from 'push' at /usr/include/boost/pending/container_traits.hpp:606:29, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:1073:29, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:2258:20, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:2266:20, inlined from 'copy_impl' at /usr/include/boost/graph/detail/adjacency_list.hpp:2193:27: /usr/include/c++/13/bits/new_allocator.h:187:11: warning: 'p' may be used uninitialized [-Wmaybe-uninitialized] 187 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^ /usr/include/boost/graph/detail/adjacency_list.hpp: In member function 'copy_impl': /usr/include/boost/graph/detail/adjacency_list.hpp:2265:41: note: 'p' was declared here 2265 | typename Config::edge_property_type p; | ^ [ 57%] Linking CXX executable graphmolSGroupCatch cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolSGroupCatch.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/graphmolSGroupCatch.dir/catch_sgroups.cpp.o -o graphmolSGroupCatch ../RDGeneral/librdkitCatch.so ../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../lib/libRDKitDepictor.so.1.2023.03.2 ../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 57%] Built target graphmolSGroupCatch /usr/bin/gmake -f Code/GraphMol/CMakeFiles/graphmolAdjustQueryCatch.dir/build.make Code/GraphMol/CMakeFiles/graphmolAdjustQueryCatch.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CMakeFiles/graphmolAdjustQueryCatch.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f 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-grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/graphmolAdjustQueryCatch.dir/catch_adjustquery.cpp.o -MF CMakeFiles/graphmolAdjustQueryCatch.dir/catch_adjustquery.cpp.o.d -o CMakeFiles/graphmolAdjustQueryCatch.dir/catch_adjustquery.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/catch_adjustquery.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/catch_adjustquery.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 57%] Built target graphmolTestsCatch /usr/bin/gmake -f Code/GraphMol/CMakeFiles/chiralityTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/chiralityTestsCatch.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CMakeFiles/chiralityTestsCatch.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/CMakeFiles/chiralityTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/chiralityTestsCatch.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 57%] Building CXX object Code/GraphMol/CMakeFiles/chiralityTestsCatch.dir/catch_chirality.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/chiralityTestsCatch.dir/catch_chirality.cpp.o -MF CMakeFiles/chiralityTestsCatch.dir/catch_chirality.cpp.o.d -o CMakeFiles/chiralityTestsCatch.dir/catch_chirality.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/catch_chirality.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/catch_chirality.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 58%] Linking CXX executable graphmolAdjustQueryCatch cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolAdjustQueryCatch.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/graphmolAdjustQueryCatch.dir/catch_adjustquery.cpp.o -o graphmolAdjustQueryCatch ../RDGeneral/librdkitCatch.so ../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../lib/libRDKitDepictor.so.1.2023.03.2 ../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../lib/libRDKitSmilesParse.so.1.2023.03.2 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/test.cpp.o -MF CMakeFiles/smiTest1.dir/test.cpp.o.d -o CMakeFiles/smiTest1.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/test.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/test.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 59%] Linking CXX executable chiralityTestsCatch cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/chiralityTestsCatch.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security 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../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so [ 60%] Linking CXX executable smiTest1 cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/smiTest1.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection 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/usr/lib64/libboost_serialization.so.1.78.0 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 60%] Built target chiralityTestsCatch /usr/bin/gmake -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/DependInfo.cmake --color= gmake[2]: Leaving directory 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Code/GraphMol/SmilesParse/CMakeFiles/nontetrahedralCatch.dir/nontetrahedral_tests.cpp.o -MF CMakeFiles/nontetrahedralCatch.dir/nontetrahedral_tests.cpp.o.d -o CMakeFiles/nontetrahedralCatch.dir/nontetrahedral_tests.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/nontetrahedral_tests.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/nontetrahedral_tests.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 61%] Linking CXX executable nontetrahedralCatch cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/nontetrahedralCatch.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic 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62%] Linking CXX executable testGeneralFileReader cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testGeneralFileReader.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testGeneralFileReader.dir/testGeneralFileReader.cpp.o -o testGeneralFileReader ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitRDStreams.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.78.0 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libz.so /usr/lib64/libboost_iostreams.so.1.78.0 gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 62%] Built target testGeneralFileReader /usr/bin/gmake -f 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executable fileParsersTest1 cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileParsersTest1.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/fileParsersTest1.dir/test1.cpp.o -o fileParsersTest1 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.78.0 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so [ 63%] Linking CXX executable testMultithreadedMolSupplier cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMultithreadedMolSupplier.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testMultithreadedMolSupplier.dir/testMultithreadedMolSupplier.cpp.o -o testMultithreadedMolSupplier ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitRDStreams.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_iostreams.so.1.78.0 gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 63%] Built target testMultithreadedMolSupplier /usr/bin/gmake -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make 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Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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'/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 63%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/testTpls.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/testTpls.cpp.o -MF CMakeFiles/testTplParser.dir/testTpls.cpp.o.d -o CMakeFiles/testTplParser.dir/testTpls.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/testTpls.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/testTpls.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 63%] Linking CXX executable testMolWriter cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolWriter.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o -o testMolWriter ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.78.0 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so [ 64%] Linking CXX executable testTplParser cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testTplParser.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testTplParser.dir/testTpls.cpp.o -o testTplParser ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.78.0 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 64%] Built target testTplParser /usr/bin/gmake -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make 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Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/testSequence.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/testSequence.cpp.o -MF CMakeFiles/testSequence.dir/testSequence.cpp.o.d -o CMakeFiles/testSequence.dir/testSequence.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/testSequence.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/testSequence.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 65%] Linking CXX executable testSequence cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSequence.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security 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CMakeFiles/testExtendedStereoParsing.dir/testExtendedStereoParsing.cpp.o.d -o CMakeFiles/testExtendedStereoParsing.dir/testExtendedStereoParsing.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/testExtendedStereoParsing.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/testExtendedStereoParsing.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 65%] Linking CXX executable testMol2ToMol cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMol2ToMol.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection 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-I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/file_parsers_catch.cpp.o -MF CMakeFiles/fileParsersCatchTest.dir/file_parsers_catch.cpp.o.d -o CMakeFiles/fileParsersCatchTest.dir/file_parsers_catch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/file_parsers_catch.cpp annobin: 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Code/GraphMol/FileParsers/CMakeFiles/testPropertyLists.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 65%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testPropertyLists.dir/testPropertyLists.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/testPropertyLists.dir/testPropertyLists.cpp.o -MF CMakeFiles/testPropertyLists.dir/testPropertyLists.cpp.o.d -o CMakeFiles/testPropertyLists.dir/testPropertyLists.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/testPropertyLists.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/testPropertyLists.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 66%] Linking CXX executable testPropertyLists cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testPropertyLists.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testPropertyLists.dir/testPropertyLists.cpp.o -o testPropertyLists ../../RDGeneral/librdkitCatch.so ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.78.0 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 66%] Built target testPropertyLists /usr/bin/gmake -f Code/GraphMol/FileParsers/CMakeFiles/XYZFileParserCatchTest.dir/build.make 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Code/GraphMol/FileParsers/CMakeFiles/XYZFileParserCatchTest.dir/XYZFileParserCatchTest.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong 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--verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/XYZFileParserCatchTest.dir/XYZFileParserCatchTest.cpp.o -o XYZFileParserCatchTest ../../RDGeneral/librdkitCatch.so ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.78.0 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so [ 66%] Linking CXX executable fileParsersCatchTest cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileParsersCatchTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/fileParsersCatchTest.dir/file_parsers_catch.cpp.o -o fileParsersCatchTest ../../RDGeneral/librdkitCatch.so ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.78.0 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 66%] Built target XYZFileParserCatchTest /usr/bin/gmake -f Code/GraphMol/FileParsers/CMakeFiles/cdxmlParserCatchTest.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/cdxmlParserCatchTest.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 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Code/GraphMol/FileParsers/CMakeFiles/cdxmlParserCatchTest.dir/cdxml_parser_catch.cpp.o -MF CMakeFiles/cdxmlParserCatchTest.dir/cdxml_parser_catch.cpp.o.d -o CMakeFiles/cdxmlParserCatchTest.dir/cdxml_parser_catch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/cdxml_parser_catch.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/cdxml_parser_catch.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 66%] Built target fileParsersCatchTest /usr/bin/gmake -f Code/GraphMol/FileParsers/CMakeFiles/molfileStereoCatchTest.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/molfileStereoCatchTest.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 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-DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/molfileStereoCatchTest.dir/molfile_stereo_catch.cpp.o -MF CMakeFiles/molfileStereoCatchTest.dir/molfile_stereo_catch.cpp.o.d -o CMakeFiles/molfileStereoCatchTest.dir/molfile_stereo_catch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/molfile_stereo_catch.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/molfile_stereo_catch.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 66%] Linking CXX executable cdxmlParserCatchTest cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/cdxmlParserCatchTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.78.0 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 66%] Built target cdxmlParserCatchTest /usr/bin/gmake -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Substruct 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Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Reaction.cpp.o -MF CMakeFiles/ChemReactions.dir/Reaction.cpp.o.d -o CMakeFiles/ChemReactions.dir/Reaction.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/Reaction.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/Reaction.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 66%] Linking CXX executable testGenericGroups cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/GenericGroups && /usr/bin/cmake -E cmake_link_script CMakeFiles/testGenericGroups.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testGenericGroups.dir/generic_tests.cpp.o -o testGenericGroups ../../RDGeneral/librdkitCatch.so ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so [ 66%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MDLParser.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code 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Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o -o testChemTransforms ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so [ 68%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 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CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o.d -o CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/ReactionWriter.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/ReactionWriter.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 68%] Built target testChemTransforms /usr/bin/gmake -f Code/GraphMol/ChemTransforms/CMakeFiles/chemTransformsTestCatch.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/chemTransformsTestCatch.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2023_03_2 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cmake_link_script CMakeFiles/chemTransformsTestCatch.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/chemTransformsTestCatch.dir/catch_tests.cpp.o -o chemTransformsTestCatch ../../RDGeneral/librdkitCatch.so ../../../lib/libRDKitFileParsers.so.1.2023.03.2 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Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o -MF CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o.d -o CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/ReactionRunner.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/ReactionRunner.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 68%] Built target chemTransformsTestCatch /usr/bin/gmake -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 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../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so [ 69%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION 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Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o -MF CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o.d -o CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog/Wrap/FragCatGenerator.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog/Wrap/FragCatGenerator.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 70%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 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-I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o -MF CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o.d -o CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o -c 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-Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/rdfragcatalog.so CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o ../../../../lib/libRDKitFragCatalog.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 70%] Built target rdfragcatalog /usr/bin/gmake -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 70%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/test.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/test.cpp.o -MF CMakeFiles/testDescriptors.dir/test.cpp.o.d -o CMakeFiles/testDescriptors.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors/test.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors/test.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 70%] Linking CXX shared library ../../../lib/libRDKitChemReactions.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemReactions.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects 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CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o CMakeFiles/ChemReactions.dir/PNGParser.cpp.o CMakeFiles/ChemReactions.dir/CDXMLParser.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 70%] Linking CXX executable testDescriptors cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDescriptors.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testDescriptors.dir/test.cpp.o -o testDescriptors ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitChemReactions.so.1 ../../../lib/libRDKitChemReactions.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 70%] Built target 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'/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 70%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/testAUTOCORR2D.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security 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gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors/CMakeFiles/testATF.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/Descriptors/CMakeFiles/testATF.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testATF.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 71%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testATF.dir/testATF.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection 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Code/GraphMol/Descriptors/CMakeFiles/testBCUT.dir/testBCUT.cpp.o -MF CMakeFiles/testBCUT.dir/testBCUT.cpp.o.d -o CMakeFiles/testBCUT.dir/testBCUT.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors/testBCUT.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors/testBCUT.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 72%] Linking CXX executable testATF cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testATF.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testATF.dir/testATF.cpp.o -o testATF ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 72%] Built target testATF /usr/bin/gmake -f Code/GraphMol/Descriptors/CMakeFiles/descriptorsTestCatch.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/descriptorsTestCatch.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors 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-I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/Descriptors/CMakeFiles/descriptorsTestCatch.dir/catch_tests.cpp.o -MF CMakeFiles/descriptorsTestCatch.dir/catch_tests.cpp.o.d -o 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-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testBCUT.dir/testBCUT.cpp.o -o testBCUT ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 72%] Built target testBCUT /usr/bin/gmake -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors/Wrap 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../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 72%] Built target descriptorsTestCatch /usr/bin/gmake -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2023_03_2 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-Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/rdMolDescriptors.so CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o ../../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 73%] Linking CXX executable testFingerprints cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFingerprints.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security 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../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 73%] Built target rdMolDescriptors /usr/bin/gmake -f Code/GraphMol/Fingerprints/CMakeFiles/testMHFPFingerprint.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testMHFPFingerprint.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/CMakeFiles/testMHFPFingerprint.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/Fingerprints/CMakeFiles/testMHFPFingerprint.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testMHFPFingerprint.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 73%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/testMHFPFingerprint.dir/testMHFPFingerprint.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK 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-Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/testFingerprintGenerators.cpp.o -MF CMakeFiles/testFingerprintGenerators.dir/testFingerprintGenerators.cpp.o.d -o CMakeFiles/testFingerprintGenerators.dir/testFingerprintGenerators.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/testFingerprintGenerators.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/testFingerprintGenerators.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 73%] Linking CXX executable testMHFPFingerprint cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMHFPFingerprint.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testMHFPFingerprint.dir/testMHFPFingerprint.cpp.o -o testMHFPFingerprint ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 73%] Built target testMHFPFingerprint /usr/bin/gmake -f Code/GraphMol/Fingerprints/CMakeFiles/fpTestCatch.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/fpTestCatch.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 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Code/GraphMol/Fingerprints/CMakeFiles/fpTestCatch.dir/catch_tests.cpp.o -MF CMakeFiles/fpTestCatch.dir/catch_tests.cpp.o.d -o CMakeFiles/fpTestCatch.dir/catch_tests.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/catch_tests.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/catch_tests.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 73%] Linking CXX executable fpTestCatch cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/fpTestCatch.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/fpTestCatch.dir/catch_tests.cpp.o -o fpTestCatch ../../RDGeneral/librdkitCatch.so ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so [ 73%] Linking CXX executable testFingerprintGenerators cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFingerprintGenerators.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testFingerprintGenerators.dir/testFingerprintGenerators.cpp.o -o testFingerprintGenerators ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 73%] Built target fpTestCatch /usr/bin/gmake -f Code/GraphMol/Fingerprints/CMakeFiles/fpGenTestCatch.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/fpGenTestCatch.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints 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-I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/fpGenTestCatch.dir/fpgen_catch_tests.cpp.o -MF CMakeFiles/fpGenTestCatch.dir/fpgen_catch_tests.cpp.o.d -o CMakeFiles/fpGenTestCatch.dir/fpgen_catch_tests.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/fpgen_catch_tests.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/fpgen_catch_tests.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 73%] Built target testFingerprintGenerators /usr/bin/gmake -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms 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-I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/test1.cpp.o -MF CMakeFiles/testMolTransforms.dir/test1.cpp.o.d -o CMakeFiles/testMolTransforms.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms/test1.cpp annobin: 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gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 73%] Built target fpGenTestCatch /usr/bin/gmake -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/MMFF /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/MMFF /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f 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/usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o -MF CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o.d -o CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/MMFF/testMMFFHelpers.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/MMFF/testMMFFHelpers.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 73%] Linking CXX executable testMolTransforms cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolTransforms.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testMolTransforms.dir/test1.cpp.o -o testMolTransforms ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 73%] Built target testMolTransforms /usr/bin/gmake -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpersMultiThread.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpersMultiThread.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/MMFF /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/MMFF /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpersMultiThread.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpersMultiThread.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpersMultiThread.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 73%] Building CXX object Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpersMultiThread.dir/testMultiThread.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/MMFF && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpersMultiThread.dir/testMultiThread.cpp.o -MF CMakeFiles/testMMFFForceFieldHelpersMultiThread.dir/testMultiThread.cpp.o.d -o CMakeFiles/testMMFFForceFieldHelpersMultiThread.dir/testMultiThread.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/MMFF/testMultiThread.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/MMFF/testMultiThread.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 73%] Linking CXX executable testMMFFForceFieldHelpersMultiThread cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/MMFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMFFForceFieldHelpersMultiThread.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testMMFFForceFieldHelpersMultiThread.dir/testMultiThread.cpp.o -o testMMFFForceFieldHelpersMultiThread ../../../../lib/libRDKitDistGeomHelpers.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../../lib/libRDKitDistGeometry.so.1.2023.03.2 ../../../../lib/libRDKitForceFieldHelpers.so.1.2023.03.2 ../../../../lib/libRDKitForceField.so.1.2023.03.2 ../../../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../../lib/libRDKitAlignment.so.1.2023.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 73%] Built target testMMFFForceFieldHelpersMultiThread /usr/bin/gmake -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/UFF /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/UFF /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 73%] Building CXX object Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/UFF && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o -MF CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o.d -o CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/UFF/testUFFHelpers.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/UFF/testUFFHelpers.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 74%] Linking CXX executable testMMFFForceFieldHelpers cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/MMFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMFFForceFieldHelpers.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o -o testMMFFForceFieldHelpers ../../../../lib/libRDKitDistGeomHelpers.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../../lib/libRDKitDistGeometry.so.1.2023.03.2 ../../../../lib/libRDKitForceFieldHelpers.so.1.2023.03.2 ../../../../lib/libRDKitForceField.so.1.2023.03.2 ../../../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../../lib/libRDKitAlignment.so.1.2023.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 74%] Built target testMMFFForceFieldHelpers /usr/bin/gmake -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/CrystalFF /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/CrystalFF /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 74%] Building CXX object Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/CrystalFF && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o -MF CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o.d -o CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/CrystalFF/testCrystalFF.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/CrystalFF/testCrystalFF.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 75%] Linking CXX executable testCrystalForceField cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/CrystalFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testCrystalForceField.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o -o testCrystalForceField ../../../../lib/libRDKitDistGeomHelpers.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../../lib/libRDKitDistGeometry.so.1.2023.03.2 ../../../../lib/libRDKitForceFieldHelpers.so.1.2023.03.2 ../../../../lib/libRDKitForceField.so.1.2023.03.2 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Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 75%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/DistGeomHelpers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 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cmake_link_script CMakeFiles/testUFFForceFieldHelpers.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o -o testUFFForceFieldHelpers ../../../../lib/libRDKitDistGeomHelpers.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../../lib/libRDKitDistGeometry.so.1.2023.03.2 ../../../../lib/libRDKitForceFieldHelpers.so.1.2023.03.2 ../../../../lib/libRDKitForceField.so.1.2023.03.2 ../../../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../../lib/libRDKitAlignment.so.1.2023.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/DistGeomHelpers/CMakeFiles/distGeomHelpersCatch.dir/catch_tests.cpp.o -MF CMakeFiles/distGeomHelpersCatch.dir/catch_tests.cpp.o.d -o CMakeFiles/distGeomHelpersCatch.dir/catch_tests.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/DistGeomHelpers/catch_tests.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/DistGeomHelpers/catch_tests.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 75%] Linking CXX executable distGeomHelpersCatch cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/distGeomHelpersCatch.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/distGeomHelpersCatch.dir/catch_tests.cpp.o -o distGeomHelpersCatch 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../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so [ 75%] Linking CXX executable testDistGeomHelpers cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDistGeomHelpers.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld 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../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 75%] Built target distGeomHelpersCatch /usr/bin/gmake -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/DistGeomHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 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CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o.d -o CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 75%] Built target testDistGeomHelpers /usr/bin/gmake -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign 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-I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o -MF CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o.d -o CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o -c 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../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitForceField.so.1.2023.03.2 ../../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 75%] Linking CXX shared module ../../../../rdkit/Chem/rdDistGeom.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/DistGeomHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdDistGeom.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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../../../../lib/libRDKitForceFieldHelpers.so.1.2023.03.2 ../../../../lib/libRDKitForceField.so.1.2023.03.2 ../../../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../../lib/libRDKitAlignment.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 75%] Built target testMolAlign /usr/bin/gmake -f Code/GraphMol/MolAlign/CMakeFiles/testO3AAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testO3AAlign.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign/CMakeFiles/testO3AAlign.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f 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/usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/MolAlign/CMakeFiles/testO3AAlign.dir/testO3AAlign.cpp.o -MF CMakeFiles/testO3AAlign.dir/testO3AAlign.cpp.o.d -o CMakeFiles/testO3AAlign.dir/testO3AAlign.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign/testO3AAlign.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign/testO3AAlign.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory 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Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 75%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/molAlignCatchTest.dir/catch_tests.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 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/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/molAlignCatchTest.dir/catch_tests.cpp.o -o molAlignCatchTest ../../RDGeneral/librdkitCatch.so ../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so [ 75%] Linking CXX executable testO3AAlign cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/testO3AAlign.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe 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../../../lib/libRDKitDepictor.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 ../../../lib/libRDKitDistGeometry.so.1.2023.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitForceField.so.1.2023.03.2 ../../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 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CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/SubstructMatchCustom.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/SubstructMatchCustom.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 75%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/AtomSymbol.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/freetype2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/AtomSymbol.cpp.o -MF CMakeFiles/MolDraw2D.dir/AtomSymbol.cpp.o.d -o CMakeFiles/MolDraw2D.dir/AtomSymbol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/AtomSymbol.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/AtomSymbol.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 75%] Linking CXX shared library ../../../lib/libRDKitFMCS.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_link_script CMakeFiles/FMCS.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitFMCS.so.1 -o ../../../lib/libRDKitFMCS.so.1.2023.03.2 CMakeFiles/FMCS.dir/FMCS.cpp.o CMakeFiles/FMCS.dir/Seed.cpp.o CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so In member function 'construct', inlined from 'construct' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from '_M_create_node' at /usr/include/c++/13/bits/stl_list.h:713:33, inlined from '_M_insert' at /usr/include/c++/13/bits/stl_list.h:2005:32, inlined from 'push_back' at /usr/include/c++/13/bits/stl_list.h:1306:24, inlined from 'push_dispatch' at /usr/include/boost/pending/container_traits.hpp:574:20, inlined from 'push' at /usr/include/boost/pending/container_traits.hpp:606:29, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:1073:29, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:2258:20, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:2266:20, inlined from 'addBond' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Graph.h:38:45, inlined from 'addBond' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Seed.cpp:46:19: /usr/include/c++/13/bits/new_allocator.h:187:11: warning: 'p' may be used uninitialized [-Wmaybe-uninitialized] 187 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^ /usr/include/boost/graph/detail/adjacency_list.hpp: In member function 'addBond': /usr/include/boost/graph/detail/adjacency_list.hpp:2265:41: note: 'p' was declared here 2265 | typename Config::edge_property_type p; | ^ In member function 'construct', inlined from 'construct' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from '_M_create_node' at /usr/include/c++/13/bits/stl_list.h:713:33, inlined from '_M_insert' at /usr/include/c++/13/bits/stl_list.h:2005:32, inlined from 'push_back' at /usr/include/c++/13/bits/stl_list.h:1306:24, inlined from 'push_dispatch' at /usr/include/boost/pending/container_traits.hpp:574:20, inlined from 'push' at /usr/include/boost/pending/container_traits.hpp:606:29, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:1073:29, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:2258:20, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:2266:20, inlined from 'copy_impl' at /usr/include/boost/graph/detail/adjacency_list.hpp:2193:27: /usr/include/c++/13/bits/new_allocator.h:187:11: warning: 'p' may be used uninitialized [-Wmaybe-uninitialized] 187 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^ /usr/include/boost/graph/detail/adjacency_list.hpp: In member function 'copy_impl': /usr/include/boost/graph/detail/adjacency_list.hpp:2265:41: note: 'p' was declared here 2265 | typename Config::edge_property_type p; | ^ In member function 'construct', inlined from 'construct' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from '_M_create_node' at /usr/include/c++/13/bits/stl_list.h:713:33, inlined from '_M_insert' at /usr/include/c++/13/bits/stl_list.h:2005:32, inlined from 'push_back' at /usr/include/c++/13/bits/stl_list.h:1306:24, inlined from 'push_dispatch' at /usr/include/boost/pending/container_traits.hpp:574:20, inlined from 'push' at /usr/include/boost/pending/container_traits.hpp:606:29, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:1073:29, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:2258:20, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:2266:20, inlined from 'addBond' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Graph.h:38:45, inlined from 'init' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/MaximumCommonSubgraph.cpp:227:34: /usr/include/c++/13/bits/new_allocator.h:187:11: warning: 'p' may be used uninitialized [-Wmaybe-uninitialized] 187 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^ /usr/include/boost/graph/detail/adjacency_list.hpp: In member function 'init': /usr/include/boost/graph/detail/adjacency_list.hpp:2265:41: note: 'p' was declared here 2265 | typename Config::edge_property_type p; | ^ [ 76%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawAnnotation.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/freetype2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawAnnotation.cpp.o -MF CMakeFiles/MolDraw2D.dir/DrawAnnotation.cpp.o.d -o CMakeFiles/MolDraw2D.dir/DrawAnnotation.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/DrawAnnotation.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/DrawAnnotation.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined In member function 'construct', inlined from 'construct' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from '_M_create_node' at /usr/include/c++/13/bits/stl_list.h:713:33, inlined from '_M_insert' at /usr/include/c++/13/bits/stl_list.h:2005:32, inlined from 'push_back' at /usr/include/c++/13/bits/stl_list.h:1306:24, inlined from 'push_dispatch' at /usr/include/boost/pending/container_traits.hpp:574:20, inlined from 'push' at /usr/include/boost/pending/container_traits.hpp:606:29, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:1073:29, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:2258:20, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:2266:20, inlined from 'addBond' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Graph.h:38:45, inlined from 'makeRingGraph.isra' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/RingMatchTableSet.h:231:16: /usr/include/c++/13/bits/new_allocator.h:187:11: warning: 'p' may be used uninitialized [-Wmaybe-uninitialized] 187 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^ /usr/include/boost/graph/detail/adjacency_list.hpp: In function 'makeRingGraph.isra': /usr/include/boost/graph/detail/adjacency_list.hpp:2265:41: note: 'p' was declared here 2265 | typename Config::edge_property_type p; | ^ cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFMCS.so.1.2023.03.2 ../../../lib/libRDKitFMCS.so.1 ../../../lib/libRDKitFMCS.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 76%] Built target FMCS /usr/bin/gmake -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 76%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/hashfunctions.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolHash && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolHash_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLHASH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/hashfunctions.cpp.o -MF CMakeFiles/MolHash.dir/hashfunctions.cpp.o.d -o CMakeFiles/MolHash.dir/hashfunctions.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolHash/hashfunctions.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolHash/hashfunctions.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 76%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawMol.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/freetype2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawMol.cpp.o -MF CMakeFiles/MolDraw2D.dir/DrawMol.cpp.o.d -o CMakeFiles/MolDraw2D.dir/DrawMol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/DrawMol.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/DrawMol.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 76%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/normalize.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolHash && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolHash_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLHASH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/normalize.cpp.o -MF CMakeFiles/MolHash.dir/normalize.cpp.o.d -o CMakeFiles/MolHash.dir/normalize.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolHash/normalize.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolHash/normalize.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 76%] Linking CXX shared library ../../../lib/libRDKitMolHash.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolHash.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitMolHash.so.1 -o ../../../lib/libRDKitMolHash.so.1.2023.03.2 CMakeFiles/MolHash.dir/hashfunctions.cpp.o CMakeFiles/MolHash.dir/normalize.cpp.o ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolHash.so.1.2023.03.2 ../../../lib/libRDKitMolHash.so.1 ../../../lib/libRDKitMolHash.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 76%] Built target MolHash /usr/bin/gmake -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix 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/builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MMPA/MMPA.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MMPA/MMPA.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 77%] Linking CXX shared library ../../../lib/libRDKitMMPA.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMPA.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now 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/usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so [ 77%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawMolMCH.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/freetype2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawMolMCH.cpp.o -MF CMakeFiles/MolDraw2D.dir/DrawMolMCH.cpp.o.d -o CMakeFiles/MolDraw2D.dir/DrawMolMCH.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/DrawMolMCH.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/DrawMolMCH.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMMPA.so.1.2023.03.2 ../../../lib/libRDKitMMPA.so.1 ../../../lib/libRDKitMMPA.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 77%] Built target MMPA /usr/bin/gmake -f Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/build.make Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/DependInfo.cmake --color= gmake[2]: Leaving directory 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defined [ 77%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawShape.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/freetype2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects 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Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/Edge.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong 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Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/Sort.cpp.o -MF CMakeFiles/testCIPLabeler.dir/Sort.cpp.o.d -o CMakeFiles/testCIPLabeler.dir/Sort.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/Sort.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/Sort.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 79%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextCairo.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION 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not defined [ 79%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextFTJS.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/freetype2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto 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Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextFTCairo.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/freetype2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g 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/builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables 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CMakeFiles/MolDraw2D.dir/DrawMolMCH.cpp.o CMakeFiles/MolDraw2D.dir/DrawShape.cpp.o CMakeFiles/MolDraw2D.dir/DrawText.cpp.o CMakeFiles/MolDraw2D.dir/DrawTextNotFT.cpp.o CMakeFiles/MolDraw2D.dir/DrawTextSVG.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DJS.cpp.o CMakeFiles/MolDraw2D.dir/DrawTextJS.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DCairo.cpp.o CMakeFiles/MolDraw2D.dir/DrawTextCairo.cpp.o CMakeFiles/MolDraw2D.dir/DrawTextFT.cpp.o CMakeFiles/MolDraw2D.dir/DrawTextFTSVG.cpp.o CMakeFiles/MolDraw2D.dir/DrawTextFTJS.cpp.o CMakeFiles/MolDraw2D.dir/DrawTextFTCairo.cpp.o ../../../lib/libRDKitChemReactions.so.1.2023.03.2 /usr/lib64/libfreetype.so ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 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Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule4c.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong 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-DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule5.cpp.o -MF CMakeFiles/testCIPLabeler.dir/rules/Rule5.cpp.o.d -o CMakeFiles/testCIPLabeler.dir/rules/Rule5.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule5.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule5.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 80%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule5New.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule5New.cpp.o -MF CMakeFiles/testCIPLabeler.dir/rules/Rule5New.cpp.o.d -o CMakeFiles/testCIPLabeler.dir/rules/Rule5New.cpp.o -c 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Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/SequenceRule.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong 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-fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testCIPLabeler.dir/catch_tests.cpp.o CMakeFiles/testCIPLabeler.dir/CIPMol.cpp.o CMakeFiles/testCIPLabeler.dir/CIPLabeler.cpp.o CMakeFiles/testCIPLabeler.dir/Mancude.cpp.o CMakeFiles/testCIPLabeler.dir/Digraph.cpp.o CMakeFiles/testCIPLabeler.dir/Node.cpp.o CMakeFiles/testCIPLabeler.dir/Edge.cpp.o CMakeFiles/testCIPLabeler.dir/Sort.cpp.o CMakeFiles/testCIPLabeler.dir/configs/Configuration.cpp.o CMakeFiles/testCIPLabeler.dir/configs/Sp2Bond.cpp.o CMakeFiles/testCIPLabeler.dir/configs/Tetrahedral.cpp.o CMakeFiles/testCIPLabeler.dir/rules/Rule1a.cpp.o CMakeFiles/testCIPLabeler.dir/rules/Rule1b.cpp.o CMakeFiles/testCIPLabeler.dir/rules/Rule2.cpp.o CMakeFiles/testCIPLabeler.dir/rules/Rule3.cpp.o CMakeFiles/testCIPLabeler.dir/rules/Rule4a.cpp.o CMakeFiles/testCIPLabeler.dir/rules/Rule4b.cpp.o CMakeFiles/testCIPLabeler.dir/rules/Rule4c.cpp.o CMakeFiles/testCIPLabeler.dir/rules/Rule5.cpp.o CMakeFiles/testCIPLabeler.dir/rules/Rule5New.cpp.o CMakeFiles/testCIPLabeler.dir/rules/Rule6.cpp.o CMakeFiles/testCIPLabeler.dir/rules/SequenceRule.cpp.o -o testCIPLabeler ../../RDGeneral/librdkitCatch.so ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolDraw2D.so.1.2023.03.2 ../../../lib/libRDKitMolDraw2D.so.1 ../../../lib/libRDKitMolDraw2D.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 80%] Built target MolDraw2D /usr/bin/gmake -f Code/GraphMol/Deprotect/CMakeFiles/Deprotect.dir/build.make 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'/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 80%] Building CXX object Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Trajectory && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function 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../../../lib/libRDKitSubgraphs.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.78.0 [ 81%] Linking CXX executable trajectoryTest cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Trajectory && /usr/bin/cmake -E cmake_link_script CMakeFiles/trajectoryTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe 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/usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitForceField.so.1.2023.03.2 ../../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Deprotect && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDeprotect.so.1.2023.03.2 ../../../lib/libRDKitDeprotect.so.1 ../../../lib/libRDKitDeprotect.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 81%] Built target Deprotect 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gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 81%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/RGroupDecomposition && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRGroupDecomposition_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto 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defined [ 83%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupCore.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/RGroupDecomposition && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRGroupDecomposition_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall 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/builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdmolops.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes 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../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 83%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupDecompParams.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/RGroupDecomposition && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION 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CMakeFiles/RGroupDecomposition.dir/RGroupDecompParams.cpp.o.d -o CMakeFiles/RGroupDecomposition.dir/RGroupDecompParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/RGroupDecomposition/RGroupDecompParams.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/RGroupDecomposition/RGroupDecompParams.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined In member function '__ct ', inlined from 'dereference' at /usr/include/boost/python/stl_iterator.hpp:48:61, inlined from 'dereference' at /usr/include/boost/iterator/iterator_facade.hpp:550:32, inlined from 'operator*' at /usr/include/boost/iterator/iterator_facade.hpp:656:69, inlined from '_M_range_initialize' at /usr/include/c++/13/bits/stl_vector.h:1670:20, inlined from '__ct ' at /usr/include/c++/13/bits/stl_vector.h:708:23, inlined from 'pythonObjectToVect' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDBoost/Wrap.h:140:15, inlined from 'molzipHelper' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/MolOps.cpp:951:51: /usr/include/boost/smart_ptr/shared_ptr.hpp:458:66: warning: 'MEM[(const struct shared_ptr &)&D.17789 + 24].px' may be used uninitialized [-Wmaybe-uninitialized] 458 | shared_ptr( shared_ptr const & r ) BOOST_SP_NOEXCEPT : px( r.px ), pn( r.pn ) | ^ /usr/include/boost/python/stl_iterator.hpp: In function 'molzipHelper': /usr/include/boost/python/stl_iterator.hpp:48:16: note: '' declared here 48 | return extract(this->impl_.current().get())(); | ^ [ 83%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupScore.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/RGroupDecomposition && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_64BIT_BUILD 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Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupScore.cpp.o -MF CMakeFiles/RGroupDecomposition.dir/RGroupScore.cpp.o.d -o CMakeFiles/RGroupDecomposition.dir/RGroupScore.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/RGroupDecomposition/RGroupScore.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/RGroupDecomposition/RGroupScore.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 83%] Built target rdmolops /usr/bin/gmake -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap 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../../../lib/libRDKitMolEnumerator.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolEnumerator && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolEnumerator.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitMolEnumerator.so.1 -o ../../../lib/libRDKitMolEnumerator.so.1.2023.03.2 CMakeFiles/MolEnumerator.dir/MolEnumerator.cpp.o CMakeFiles/MolEnumerator.dir/PositionVariation.cpp.o CMakeFiles/MolEnumerator.dir/LinkNode.cpp.o CMakeFiles/MolEnumerator.dir/RepeatUnit.cpp.o ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 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-I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o -MF CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o.d -o CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/SmilesWriter.cpp annobin: 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/builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/adapter.cpp:450:38: warning: unused parameter 'data' [-Wunused-parameter] 450 | extern "C" CROMol parseMolJSON(char *data, bool warnOnFail) { | ~~~~~~^~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/adapter.cpp:450:49: warning: unused parameter 'warnOnFail' [-Wunused-parameter] 450 | extern "C" CROMol parseMolJSON(char *data, bool warnOnFail) { | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/adapter.cpp: In function 'void* makeAvalonBFP(CROMol, bool, unsigned int)': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/adapter.cpp:1584:38: warning: unused parameter 'data' [-Wunused-parameter] 1584 | extern "C" CBfp makeAvalonBFP(CROMol data, bool isQuery, | ~~~~~~~^~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/adapter.cpp:1584:49: warning: unused parameter 'isQuery' [-Wunused-parameter] 1584 | extern "C" CBfp makeAvalonBFP(CROMol data, bool isQuery, | ~~~~~^~~~~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/adapter.cpp:1585:44: warning: unused parameter 'bitFlags' [-Wunused-parameter] 1585 | unsigned int bitFlags) { | ~~~~~~~~~~~~~^~~~~~~~ [ 85%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_op.c.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit && /usr/bin/gcc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2023.03.2\" -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/usr/include/pgsql/server -I/usr/include/python3.11 -I/usr/include/freetype2 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_op.c.o -MF CMakeFiles/rdkit.dir/bfp_op.c.o.d -o CMakeFiles/rdkit.dir/bfp_op.c.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/bfp_op.c [ 85%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/cache.c.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit && /usr/bin/gcc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2023.03.2\" -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/usr/include/pgsql/server -I/usr/include/python3.11 -I/usr/include/freetype2 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/cache.c.o -MF CMakeFiles/rdkit.dir/cache.c.o.d -o CMakeFiles/rdkit.dir/cache.c.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/cache.c [ 85%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/guc.c.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit && /usr/bin/gcc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2023.03.2\" -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/usr/include/pgsql/server -I/usr/include/python3.11 -I/usr/include/freetype2 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic 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-DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/usr/include/pgsql/server -I/usr/include/python3.11 -I/usr/include/freetype2 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/low_gist.c.o -MF CMakeFiles/rdkit.dir/low_gist.c.o.d -o CMakeFiles/rdkit.dir/low_gist.c.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/low_gist.c [ 85%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o -MF CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o.d -o CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/PDBWriter.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/PDBWriter.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 85%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/mol_op.c.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit && /usr/bin/gcc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2023.03.2\" -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/usr/include/pgsql/server -I/usr/include/python3.11 -I/usr/include/freetype2 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/mol_op.c.o -MF CMakeFiles/rdkit.dir/mol_op.c.o.d -o CMakeFiles/rdkit.dir/mol_op.c.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/mol_op.c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/mol_op.c: In function 'mol_nm_hash': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/mol_op.c:358:7: warning: unused variable 'len' [-Wunused-variable] 358 | int len; | ^~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_smiles_transition': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/mol_op.c:455:1: warning: control reaches end of non-void function [-Wreturn-type] 455 | } | ^ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_mol_transition': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/mol_op.c:590:1: warning: control reaches end of non-void function [-Wreturn-type] 590 | } | ^ [ 85%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rdkit_gist.c.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit && /usr/bin/gcc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2023.03.2\" -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/usr/include/pgsql/server -I/usr/include/python3.11 -I/usr/include/freetype2 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rdkit_gist.c.o -MF CMakeFiles/rdkit.dir/rdkit_gist.c.o.d -o CMakeFiles/rdkit.dir/rdkit_gist.c.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/rdkit_gist.c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/rdkit_gist.c: In function 'soergeldist': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/rdkit_gist.c:237:10: warning: unused variable 'd' [-Wunused-variable] 237 | double d; | ^ [ 86%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_gist.c.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit && /usr/bin/gcc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2023.03.2\" -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/usr/include/pgsql/server -I/usr/include/python3.11 -I/usr/include/freetype2 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_gist.c.o -MF CMakeFiles/rdkit.dir/bfp_gist.c.o.d -o CMakeFiles/rdkit.dir/bfp_gist.c.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/bfp_gist.c [ 86%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_gin.c.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit && /usr/bin/gcc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2023.03.2\" -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/usr/include/pgsql/server -I/usr/include/python3.11 -I/usr/include/freetype2 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_gin.c.o -MF CMakeFiles/rdkit.dir/bfp_gin.c.o.d -o CMakeFiles/rdkit.dir/bfp_gin.c.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/bfp_gin.c [ 86%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bitstring.c.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit && /usr/bin/gcc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2023.03.2\" -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/usr/include/pgsql/server -I/usr/include/python3.11 -I/usr/include/freetype2 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bitstring.c.o -MF CMakeFiles/rdkit.dir/bitstring.c.o.d -o CMakeFiles/rdkit.dir/bitstring.c.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/bitstring.c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/bitstring.c: In function 'bitstringUnion': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/bitstring.c:64:7: warning: unused variable 'i' [-Wunused-variable] 64 | int i; | ^ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/bitstring.c: In function 'bitstringIntersection': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/bitstring.c:96:7: warning: unused variable 'i' [-Wunused-variable] 96 | int i; | ^ [ 86%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rdkit_io.c.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit && /usr/bin/gcc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2023.03.2\" -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/usr/include/pgsql/server -I/usr/include/python3.11 -I/usr/include/freetype2 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rdkit_io.c.o -MF CMakeFiles/rdkit.dir/rdkit_io.c.o.d -o CMakeFiles/rdkit.dir/rdkit_io.c.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/rdkit_io.c [ 86%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rxn_op.c.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit && /usr/bin/gcc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2023.03.2\" -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/usr/include/pgsql/server -I/usr/include/python3.11 -I/usr/include/freetype2 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rxn_op.c.o -MF CMakeFiles/rdkit.dir/rxn_op.c.o.d -o CMakeFiles/rdkit.dir/rxn_op.c.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/rxn_op.c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/rxn_op.c:134:3: warning: multi-line comment [-Wcomment] 134 | // /* keep compiler quiet - no extra ; */ \ | ^ [ 86%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/sfp_op.c.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit && /usr/bin/gcc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2023.03.2\" -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/usr/include/pgsql/server -I/usr/include/python3.11 -I/usr/include/freetype2 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/sfp_op.c.o -MF CMakeFiles/rdkit.dir/sfp_op.c.o.d -o CMakeFiles/rdkit.dir/sfp_op.c.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/sfp_op.c [ 86%] Linking CXX shared library librdkit.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/sql /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/sql cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/data /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/data cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/expected /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/expected cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdkit.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,librdkit.so -o librdkit.so CMakeFiles/rdkit.dir/adapter.cpp.o CMakeFiles/rdkit.dir/bfp_op.c.o CMakeFiles/rdkit.dir/cache.c.o CMakeFiles/rdkit.dir/guc.c.o CMakeFiles/rdkit.dir/low_gist.c.o CMakeFiles/rdkit.dir/mol_op.c.o CMakeFiles/rdkit.dir/rdkit_gist.c.o CMakeFiles/rdkit.dir/bfp_gist.c.o CMakeFiles/rdkit.dir/bfp_gin.c.o CMakeFiles/rdkit.dir/bitstring.c.o CMakeFiles/rdkit.dir/rdkit_io.c.o CMakeFiles/rdkit.dir/rxn_op.c.o CMakeFiles/rdkit.dir/sfp_op.c.o -L/builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/lib64 /usr/lib64/libpq.so ../../../lib/libRDKitRDInchiLib.so.1.2023.03.2 /usr/lib64/libinchi.so ../../../lib/libRDKitMolDraw2D.so.1.2023.03.2 ../../../lib/libRDKitMolHash.so.1.2023.03.2 ../../../lib/libRDKitFMCS.so.1.2023.03.2 ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 /usr/lib64/libcairo.so /usr/lib64/libfreetype.so ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 86%] Built target rdkit /usr/bin/gmake -f External/INCHI-API/CMakeFiles/testInchi.dir/build.make External/INCHI-API/CMakeFiles/testInchi.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2023_03_2/External/INCHI-API/CMakeFiles/testInchi.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f External/INCHI-API/CMakeFiles/testInchi.dir/build.make External/INCHI-API/CMakeFiles/testInchi.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 86%] Building CXX object External/INCHI-API/CMakeFiles/testInchi.dir/test.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/External/INCHI-API && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT External/INCHI-API/CMakeFiles/testInchi.dir/test.cpp.o -MF CMakeFiles/testInchi.dir/test.cpp.o.d -o CMakeFiles/testInchi.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/External/INCHI-API/test.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/External/INCHI-API/test.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 86%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MultithreadedSmilesMolSupplier.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong 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../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.78.0 gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 87%] Built target testReactionFingerprints /usr/bin/gmake -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions 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-DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o -MF CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o.d -o CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/MolStandardize.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/MolStandardize.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 87%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Metal.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Metal.cpp.o -MF CMakeFiles/MolStandardize.dir/Metal.cpp.o.d -o CMakeFiles/MolStandardize.dir/Metal.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Metal.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Metal.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined In file included from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/smart_ptr.hpp:19, from /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Vector.h:23, from /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/point.h:24, from /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolPickler.h:14, from /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp:34: In member function 'boost::shared_ptr::shared_ptr(boost::shared_ptr const&)', inlined from 'RDKit::RunReactant(RDKit::ChemicalReaction*, boost::python::api::object, unsigned int)_object*' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp:129:14: /usr/include/boost/smart_ptr/shared_ptr.hpp:458:66: warning: 'MEM[(const struct shared_ptr &)&D.533494 + 24].px' may be used uninitialized [-Wmaybe-uninitialized] 458 | shared_ptr( shared_ptr const & r ) BOOST_SP_NOEXCEPT : px( r.px ), pn( r.pn ) | ~~^~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp: In function 'RDKit::RunReactant(RDKit::ChemicalReaction*, boost::python::api::object, unsigned int)_object*': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp:129:30: note: '' declared here 129 | ROMOL_SPTR react = python::extract(reactant); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/shared_ptr.hpp:17: In member function 'boost::detail::shared_count::shared_count(boost::detail::shared_count const&)', inlined from 'boost::shared_ptr::shared_ptr(boost::shared_ptr const&)' at /usr/include/boost/smart_ptr/shared_ptr.hpp:458:72, inlined from 'RDKit::RunReactant(RDKit::ChemicalReaction*, boost::python::api::object, unsigned int)_object*' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp:129:14: /usr/include/boost/smart_ptr/detail/shared_count.hpp:438:67: warning: 'MEM[(const struct shared_count &)&D.533494 + 32].pi_' may be used uninitialized [-Wmaybe-uninitialized] 438 | shared_count(shared_count const & r) BOOST_SP_NOEXCEPT: pi_(r.pi_) | ~~^~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp: In function 'RDKit::RunReactant(RDKit::ChemicalReaction*, boost::python::api::object, unsigned int)_object*': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp:129:30: note: '' declared here 129 | ROMOL_SPTR react = python::extract(reactant); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 88%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Normalize.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Normalize.cpp.o -MF CMakeFiles/MolStandardize.dir/Normalize.cpp.o.d -o CMakeFiles/MolStandardize.dir/Normalize.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Normalize.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Normalize.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 88%] Linking CXX shared module ../../../../rdkit/Chem/rdChemReactions.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdChemReactions.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 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../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 88%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Validate.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Validate.cpp.o -MF CMakeFiles/MolStandardize.dir/Validate.cpp.o.d -o CMakeFiles/MolStandardize.dir/Validate.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Validate.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Validate.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 88%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Charge.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Charge.cpp.o -MF CMakeFiles/MolStandardize.dir/Charge.cpp.o.d -o CMakeFiles/MolStandardize.dir/Charge.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Charge.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Charge.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined In member function '__ct ', inlined from 'RunReactant' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp:129:14: /usr/include/boost/smart_ptr/shared_ptr.hpp:458:66: warning: 'MEM[(const struct shared_ptr &)&D.13093 + 24].px' may be used uninitialized [-Wmaybe-uninitialized] 458 | shared_ptr( shared_ptr const & r ) BOOST_SP_NOEXCEPT : px( r.px ), pn( r.pn ) | ^ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp: In function 'RunReactant': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp:129:30: note: '' declared here 129 | ROMOL_SPTR react = python::extract(reactant); | ^ [ 88%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Tautomer.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Tautomer.cpp.o -MF CMakeFiles/MolStandardize.dir/Tautomer.cpp.o.d -o CMakeFiles/MolStandardize.dir/Tautomer.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Tautomer.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Tautomer.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 88%] Built target rdChemReactions /usr/bin/gmake -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 88%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/test1.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D && /usr/bin/g++ 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-DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogParams.cpp.o -MF 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-fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/moldraw2DTest1.dir/test1.cpp.o -o moldraw2DTest1 ../../../lib/libRDKitMolDraw2D.so.1.2023.03.2 ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libcairo.so /usr/lib64/libfreetype.so [ 88%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogUtils.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK 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'/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTestCatch.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTestCatch.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTestCatch.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 89%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTestCatch.dir/catch_tests.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D && 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../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 /usr/lib64/libcairo.so /usr/lib64/libfreetype.so ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 91%] Linking CXX shared library ../../../lib/libRDKitMolStandardize.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolStandardize.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitMolStandardize.so.1 -o ../../../lib/libRDKitMolStandardize.so.1.2023.03.2 CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o CMakeFiles/MolStandardize.dir/Metal.cpp.o CMakeFiles/MolStandardize.dir/Normalize.cpp.o CMakeFiles/MolStandardize.dir/Validate.cpp.o CMakeFiles/MolStandardize.dir/Charge.cpp.o CMakeFiles/MolStandardize.dir/Tautomer.cpp.o CMakeFiles/MolStandardize.dir/Fragment.cpp.o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogEntry.cpp.o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogParams.cpp.o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogUtils.cpp.o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogEntry.cpp.o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogParams.cpp.o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogUtils.cpp.o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogEntry.cpp.o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogParams.cpp.o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogUtils.cpp.o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogEntry.cpp.o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogParams.cpp.o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogUtils.cpp.o ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so /usr/lib64/libboost_serialization.so.1.78.0 cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolStandardize.so.1.2023.03.2 ../../../lib/libRDKitMolStandardize.so.1 ../../../lib/libRDKitMolStandardize.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 91%] Built target MolStandardize /usr/bin/gmake -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 91%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/freetype2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o -MF CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o.d -o CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/rxn_test1.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/rxn_test1.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 91%] Built target moldraw2DTestCatch /usr/bin/gmake -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 91%] Building CXX object Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/Wrap && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolDraw2D_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/freetype2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o -MF CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o.d -o CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/Wrap/rdMolDraw2D.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/Wrap/rdMolDraw2D.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 91%] Linking CXX executable moldraw2DRxnTest1 cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldraw2DRxnTest1.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o -o moldraw2DRxnTest1 ../../../lib/libRDKitMolDraw2D.so.1.2023.03.2 ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libcairo.so /usr/lib64/libfreetype.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 91%] Built target moldraw2DRxnTest1 /usr/bin/gmake -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 92%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o -MF CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o.d -o CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/testFMCS_Unit.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/testFMCS_Unit.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 92%] Linking CXX executable testFMCS cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFMCS.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o -o testFMCS ../../../lib/libRDKitFMCS.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.78.0 gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 92%] Built target testFMCS /usr/bin/gmake -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 92%] Building CXX object Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Wrap && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdFMCS_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o -MF CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o.d -o CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Wrap/rdFMCS.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Wrap/rdFMCS.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 92%] Linking CXX shared module ../../../../rdkit/Chem/Draw/rdMolDraw2D.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolDraw2D.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/Draw/rdMolDraw2D.so CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o ../../../../lib/libRDKitMolDraw2D.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 /usr/lib64/libcairo.so /usr/lib64/libfreetype.so /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 92%] Linking CXX shared module ../../../../rdkit/Chem/rdFMCS.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdFMCS.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/rdFMCS.so CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o ../../../../lib/libRDKitFMCS.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl In member function '__ct ', inlined from 'dereference' at /usr/include/boost/python/stl_iterator.hpp:48:61, inlined from 'dereference' at /usr/include/boost/iterator/iterator_facade.hpp:550:32, inlined from 'operator*' at /usr/include/boost/iterator/iterator_facade.hpp:656:69, inlined from '_M_range_initialize' at /usr/include/c++/13/bits/stl_vector.h:1670:20, inlined from '__ct ' at /usr/include/c++/13/bits/stl_vector.h:708:23, inlined from 'pythonObjectToVect' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDBoost/Wrap.h:140:15: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/point.h:283:57: warning: 'MEM[(const struct Point2D &)&D.24885 + 24].x' may be used uninitialized [-Wmaybe-uninitialized] 283 | Point2D(const Point2D &other) : Point(other), x(other.x), y(other.y) {} | ^ /usr/include/boost/python/stl_iterator.hpp: In function 'pythonObjectToVect': /usr/include/boost/python/stl_iterator.hpp:48:16: note: '' declared here 48 | return extract(this->impl_.current().get())(); | ^ In member function '__ct ', inlined from 'dereference' at /usr/include/boost/python/stl_iterator.hpp:48:61, inlined from 'dereference' at /usr/include/boost/iterator/iterator_facade.hpp:550:32, inlined from 'operator*' at /usr/include/boost/iterator/iterator_facade.hpp:656:69, inlined from '_M_range_initialize' at /usr/include/c++/13/bits/stl_vector.h:1670:20, inlined from '__ct ' at /usr/include/c++/13/bits/stl_vector.h:708:23, inlined from 'pythonObjectToVect' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDBoost/Wrap.h:140:15: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/point.h:283:69: warning: 'MEM[(const struct Point2D &)&D.24885 + 24].y' may be used uninitialized [-Wmaybe-uninitialized] 283 | Point2D(const Point2D &other) : Point(other), x(other.x), y(other.y) {} | ^ /usr/include/boost/python/stl_iterator.hpp: In function 'pythonObjectToVect': /usr/include/boost/python/stl_iterator.hpp:48:16: note: '' declared here 48 | return extract(this->impl_.current().get())(); | ^ gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 92%] Built target rdMolDraw2D /usr/bin/gmake -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Test /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Test /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 92%] Building CXX object Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/testFMCS.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Test && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/testFMCS.cpp.o -MF CMakeFiles/FMCStest.dir/testFMCS.cpp.o.d -o CMakeFiles/FMCStest.dir/testFMCS.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Test/testFMCS.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Test/testFMCS.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined In member function 'construct', inlined from 'construct' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from '_M_create_node' at /usr/include/c++/13/bits/stl_list.h:713:33, inlined from '_M_insert' at /usr/include/c++/13/bits/stl_list.h:2005:32, inlined from 'push_back' at /usr/include/c++/13/bits/stl_list.h:1306:24, inlined from 'push_dispatch' at /usr/include/boost/pending/container_traits.hpp:574:20, inlined from 'push' at /usr/include/boost/pending/container_traits.hpp:606:29, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:1073:29, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:2258:20, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:2266:20, inlined from 'addBond' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Graph.h:38:45, inlined from 'makeRingGraph.isra' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/RingMatchTableSet.h:231:16: /usr/include/c++/13/bits/new_allocator.h:187:11: warning: 'p' may be used uninitialized [-Wmaybe-uninitialized] 187 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^ /usr/include/boost/graph/detail/adjacency_list.hpp: In function 'makeRingGraph.isra': /usr/include/boost/graph/detail/adjacency_list.hpp:2265:41: note: 'p' was declared here 2265 | typename Config::edge_property_type p; | ^ gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 92%] Built target rdFMCS /usr/bin/gmake -f Code/GraphMol/MolHash/CMakeFiles/molHashCatchTest.dir/build.make Code/GraphMol/MolHash/CMakeFiles/molHashCatchTest.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolHash/CMakeFiles/molHashCatchTest.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/MolHash/CMakeFiles/molHashCatchTest.dir/build.make Code/GraphMol/MolHash/CMakeFiles/molHashCatchTest.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 92%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/molHashCatchTest.dir/catch_tests.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolHash && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/MolHash/CMakeFiles/molHashCatchTest.dir/catch_tests.cpp.o -MF CMakeFiles/molHashCatchTest.dir/catch_tests.cpp.o.d -o CMakeFiles/molHashCatchTest.dir/catch_tests.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolHash/catch_tests.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolHash/catch_tests.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 92%] Linking CXX executable FMCStest cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Test && /usr/bin/cmake -E cmake_link_script CMakeFiles/FMCStest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/FMCStest.dir/testFMCS.cpp.o -o FMCStest ../../../../lib/libRDKitFMCS.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.78.0 gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 92%] Built target FMCStest /usr/bin/gmake -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolHash/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolHash/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make 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/builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_link_script CMakeFiles/molHashCatchTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/molHashCatchTest.dir/catch_tests.cpp.o -o molHashCatchTest ../../RDGeneral/librdkitCatch.so 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'/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 92%] Building CXX object Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MMPA/Wrap && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMMPA_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 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/usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl ../../../lib/libRDKitga.so.1.2023.03.2 gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 93%] Built target gaExample /usr/bin/gmake -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build.make 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Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/test1.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/test1.cpp.o -MF CMakeFiles/molStandardizeTest.dir/test1.cpp.o.d -o CMakeFiles/molStandardizeTest.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/test1.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/test1.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 93%] Linking CXX shared module ../../../../rdkit/Chem/rdRGroupDecomposition.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/RGroupDecomposition/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdRGroupDecomposition.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/rdRGroupDecomposition.so CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o ../../../../lib/libRDKitRGroupDecomposition.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitFMCS.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../../lib/libRDKitga.so.1.2023.03.2 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl In member function '__ct ', inlined from 'dereference' at /usr/include/boost/python/stl_iterator.hpp:48:61, inlined from 'dereference' at /usr/include/boost/iterator/iterator_facade.hpp:550:32, inlined from 'operator*' at /usr/include/boost/iterator/iterator_facade.hpp:656:69, inlined from '__ct_base ' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/RGroupDecomposition/Wrap/rdRGroupComposition.cpp:73:28: /usr/include/boost/smart_ptr/shared_ptr.hpp:458:66: warning: 'MEM[(const struct shared_ptr &)&D.20344 + 24].px' may be used uninitialized [-Wmaybe-uninitialized] 458 | shared_ptr( shared_ptr const & r ) BOOST_SP_NOEXCEPT : px( r.px ), pn( r.pn ) | ^ /usr/include/boost/python/stl_iterator.hpp: In member function '__ct_base ': /usr/include/boost/python/stl_iterator.hpp:48:16: note: '' declared here 48 | return extract(this->impl_.current().get())(); | ^ In member function '__ct ', inlined from 'dereference' at /usr/include/boost/python/stl_iterator.hpp:48:61, inlined from 'dereference' at /usr/include/boost/iterator/iterator_facade.hpp:550:32, inlined from 'operator*' at /usr/include/boost/iterator/iterator_facade.hpp:656:69, inlined from '__ct_base ' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/RGroupDecomposition/Wrap/rdRGroupComposition.cpp:70:14: /usr/include/boost/smart_ptr/shared_ptr.hpp:458:66: warning: 'MEM[(const struct shared_ptr &)&D.20136 + 24].px' may be used uninitialized [-Wmaybe-uninitialized] 458 | shared_ptr( shared_ptr const & r ) BOOST_SP_NOEXCEPT : px( r.px ), pn( r.pn ) | ^ /usr/include/boost/python/stl_iterator.hpp: In member function '__ct_base ': /usr/include/boost/python/stl_iterator.hpp:48:16: note: '' declared here 48 | return extract(this->impl_.current().get())(); | ^ In member function '__ct ', inlined from 'dereference' at /usr/include/boost/python/stl_iterator.hpp:48:61, inlined from 'dereference' at /usr/include/boost/iterator/iterator_facade.hpp:550:32, inlined from 'operator*' at /usr/include/boost/iterator/iterator_facade.hpp:656:69, inlined from 'RGroupDecomp' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/RGroupDecomposition/Wrap/rdRGroupComposition.cpp:156:22: /usr/include/boost/smart_ptr/shared_ptr.hpp:458:66: warning: 'MEM[(const struct shared_ptr &)&D.41958 + 24].px' may be used uninitialized [-Wmaybe-uninitialized] 458 | shared_ptr( shared_ptr const & r ) BOOST_SP_NOEXCEPT : px( r.px ), pn( r.pn ) | ^ /usr/include/boost/python/stl_iterator.hpp: In function 'RGroupDecomp': /usr/include/boost/python/stl_iterator.hpp:48:16: note: '' declared here 48 | return extract(this->impl_.current().get())(); | ^ In member function '__ct ', inlined from 'dereference' at /usr/include/boost/python/stl_iterator.hpp:48:61, inlined from 'dereference' at /usr/include/boost/iterator/iterator_facade.hpp:550:32, inlined from 'operator*' at /usr/include/boost/iterator/iterator_facade.hpp:656:69, inlined from 'RGroupDecomp' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/RGroupDecomposition/Wrap/rdRGroupComposition.cpp:153:10: /usr/include/boost/smart_ptr/shared_ptr.hpp:458:66: warning: 'MEM[(const struct shared_ptr &)&D.41848 + 24].px' may be used uninitialized [-Wmaybe-uninitialized] 458 | shared_ptr( shared_ptr const & r ) BOOST_SP_NOEXCEPT : px( r.px ), pn( r.pn ) | ^ /usr/include/boost/python/stl_iterator.hpp: In function 'RGroupDecomp': /usr/include/boost/python/stl_iterator.hpp:48:16: note: '' declared here 48 | return extract(this->impl_.current().get())(); | ^ [ 93%] Linking CXX executable molStandardizeTest cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molStandardizeTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/molStandardizeTest.dir/test1.cpp.o -o molStandardizeTest ../../../lib/libRDKitMolStandardize.so.1.2023.03.2 ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 93%] Built target rdRGroupDecomposition /usr/bin/gmake -f Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 94%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/testNormalize.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/testNormalize.cpp.o -MF CMakeFiles/molNormalizeTest.dir/testNormalize.cpp.o.d -o CMakeFiles/molNormalizeTest.dir/testNormalize.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/testNormalize.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/testNormalize.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 94%] Built target molStandardizeTest /usr/bin/gmake -f Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 94%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/testValidate.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/testValidate.cpp.o -MF CMakeFiles/molValidateTest.dir/testValidate.cpp.o.d -o CMakeFiles/molValidateTest.dir/testValidate.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/testValidate.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/testValidate.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 94%] Linking CXX executable molNormalizeTest cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molNormalizeTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/molNormalizeTest.dir/testNormalize.cpp.o -o molNormalizeTest ../../../lib/libRDKitMolStandardize.so.1.2023.03.2 ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 94%] Built target molNormalizeTest /usr/bin/gmake -f Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/build.make 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Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/testFragment.cpp.o -MF CMakeFiles/molFragmentTest.dir/testFragment.cpp.o.d -o CMakeFiles/molFragmentTest.dir/testFragment.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/testFragment.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/testFragment.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 95%] Linking CXX executable molTautomerTest cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molTautomerTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection 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../../../lib/libRDKitGenericGroups.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 95%] Linking CXX executable molFragmentTest cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molFragmentTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 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../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 95%] Built target molFragmentTest /usr/bin/gmake -f 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'/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 95%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeCatchTest.dir/catch_tests.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall 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Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Validate.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Wrap && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security 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cmake_link_script CMakeFiles/molStandardizeCatchTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/molStandardizeCatchTest.dir/catch_tests.cpp.o -o molStandardizeCatchTest ../../RDGeneral/librdkitCatch.so ../../../lib/libRDKitMolStandardize.so.1.2023.03.2 ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 95%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Charge.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Wrap && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Charge.cpp.o -MF CMakeFiles/rdMolStandardize.dir/Charge.cpp.o.d -o CMakeFiles/rdMolStandardize.dir/Charge.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Wrap/Charge.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Wrap/Charge.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 95%] Built target molStandardizeCatchTest /usr/bin/gmake -f Code/GraphMol/ScaffoldNetwork/CMakeFiles/ScaffoldNetwork.dir/build.make Code/GraphMol/ScaffoldNetwork/CMakeFiles/ScaffoldNetwork.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ScaffoldNetwork /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ScaffoldNetwork /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ScaffoldNetwork/CMakeFiles/ScaffoldNetwork.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/ScaffoldNetwork/CMakeFiles/ScaffoldNetwork.dir/build.make 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-isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ScaffoldNetwork/CMakeFiles/ScaffoldNetwork.dir/ScaffoldNetwork.cpp.o -MF CMakeFiles/ScaffoldNetwork.dir/ScaffoldNetwork.cpp.o.d -o CMakeFiles/ScaffoldNetwork.dir/ScaffoldNetwork.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ScaffoldNetwork/ScaffoldNetwork.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ScaffoldNetwork/ScaffoldNetwork.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 95%] Linking CXX shared library ../../../lib/libRDKitScaffoldNetwork.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ScaffoldNetwork && /usr/bin/cmake -E cmake_link_script CMakeFiles/ScaffoldNetwork.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitScaffoldNetwork.so.1 -o ../../../lib/libRDKitScaffoldNetwork.so.1.2023.03.2 CMakeFiles/ScaffoldNetwork.dir/ScaffoldNetwork.cpp.o ../../../lib/libRDKitMolStandardize.so.1.2023.03.2 ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 95%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Wrap && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o -MF CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o.d -o CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o -c 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../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 96%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Metal.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Wrap && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB 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Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Tautomer.cpp.o -MF CMakeFiles/rdMolStandardize.dir/Tautomer.cpp.o.d -o CMakeFiles/rdMolStandardize.dir/Tautomer.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Wrap/Tautomer.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Wrap/Tautomer.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 97%] Linking CXX shared module ../../../../rdkit/Chem/rdMolEnumerator.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolEnumerator/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolEnumerator.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/rdMolEnumerator.so CMakeFiles/rdMolEnumerator.dir/rdMolEnumerator.cpp.o ../../../../lib/libRDKitMolEnumerator.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 97%] Built target rdMolEnumerator /usr/bin/gmake -f Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/build.make Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/build.make Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 98%] Building CXX object Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/TautomerQuery.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_TAUTOMERQUERY_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DTautomerQuery_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/TautomerQuery.cpp.o -MF CMakeFiles/TautomerQuery.dir/TautomerQuery.cpp.o.d -o CMakeFiles/TautomerQuery.dir/TautomerQuery.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery/TautomerQuery.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery/TautomerQuery.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 98%] Linking CXX shared module ../../../../rdkit/Chem/MolStandardize/rdMolStandardize.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolStandardize.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/MolStandardize/rdMolStandardize.so CMakeFiles/rdMolStandardize.dir/rdMolStandardize.cpp.o CMakeFiles/rdMolStandardize.dir/Validate.cpp.o CMakeFiles/rdMolStandardize.dir/Charge.cpp.o CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o CMakeFiles/rdMolStandardize.dir/Normalize.cpp.o CMakeFiles/rdMolStandardize.dir/Metal.cpp.o CMakeFiles/rdMolStandardize.dir/Tautomer.cpp.o ../../../../lib/libRDKitMolStandardize.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../../lib/libRDKitFingerprints.so.1.2023.03.2 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../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 98%] Linking CXX shared library ../../../lib/libRDKitTautomerQuery.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery && /usr/bin/cmake -E cmake_link_script CMakeFiles/TautomerQuery.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitTautomerQuery.so.1 -o ../../../lib/libRDKitTautomerQuery.so.1.2023.03.2 CMakeFiles/TautomerQuery.dir/TautomerQuery.cpp.o ../../../lib/libRDKitMolStandardize.so.1.2023.03.2 ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitTautomerQuery.so.1.2023.03.2 ../../../lib/libRDKitTautomerQuery.so.1 ../../../lib/libRDKitTautomerQuery.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 98%] Built target TautomerQuery /usr/bin/gmake -f Code/GraphMol/ScaffoldNetwork/CMakeFiles/testScaffoldNetwork.dir/build.make Code/GraphMol/ScaffoldNetwork/CMakeFiles/testScaffoldNetwork.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ScaffoldNetwork /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ScaffoldNetwork /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ScaffoldNetwork/CMakeFiles/testScaffoldNetwork.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/ScaffoldNetwork/CMakeFiles/testScaffoldNetwork.dir/build.make Code/GraphMol/ScaffoldNetwork/CMakeFiles/testScaffoldNetwork.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 98%] Building CXX object Code/GraphMol/ScaffoldNetwork/CMakeFiles/testScaffoldNetwork.dir/catch_tests.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ScaffoldNetwork && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/ScaffoldNetwork/CMakeFiles/testScaffoldNetwork.dir/catch_tests.cpp.o -MF CMakeFiles/testScaffoldNetwork.dir/catch_tests.cpp.o.d -o CMakeFiles/testScaffoldNetwork.dir/catch_tests.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ScaffoldNetwork/catch_tests.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ScaffoldNetwork/catch_tests.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 98%] Built target rdMolStandardize /usr/bin/gmake -f Code/GraphMol/ScaffoldNetwork/Wrap/CMakeFiles/rdScaffoldNetwork.dir/build.make Code/GraphMol/ScaffoldNetwork/Wrap/CMakeFiles/rdScaffoldNetwork.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ScaffoldNetwork/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ScaffoldNetwork/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ScaffoldNetwork/Wrap/CMakeFiles/rdScaffoldNetwork.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/ScaffoldNetwork/Wrap/CMakeFiles/rdScaffoldNetwork.dir/build.make Code/GraphMol/ScaffoldNetwork/Wrap/CMakeFiles/rdScaffoldNetwork.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 98%] Building CXX object Code/GraphMol/ScaffoldNetwork/Wrap/CMakeFiles/rdScaffoldNetwork.dir/rdScaffoldNetwork.cpp.o cd 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../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 98%] Built target testScaffoldNetwork /usr/bin/gmake -f Code/GraphMol/TautomerQuery/CMakeFiles/tautomerQueryTestCatch.dir/build.make Code/GraphMol/TautomerQuery/CMakeFiles/tautomerQueryTestCatch.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery/CMakeFiles/tautomerQueryTestCatch.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/TautomerQuery/CMakeFiles/tautomerQueryTestCatch.dir/build.make Code/GraphMol/TautomerQuery/CMakeFiles/tautomerQueryTestCatch.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 98%] Building CXX object Code/GraphMol/TautomerQuery/CMakeFiles/tautomerQueryTestCatch.dir/catch_tests.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/TautomerQuery/CMakeFiles/tautomerQueryTestCatch.dir/catch_tests.cpp.o -MF CMakeFiles/tautomerQueryTestCatch.dir/catch_tests.cpp.o.d -o CMakeFiles/tautomerQueryTestCatch.dir/catch_tests.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery/catch_tests.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery/catch_tests.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 98%] Linking CXX shared module ../../../../rdkit/Chem/Scaffolds/rdScaffoldNetwork.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ScaffoldNetwork/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdScaffoldNetwork.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/Scaffolds/rdScaffoldNetwork.so CMakeFiles/rdScaffoldNetwork.dir/rdScaffoldNetwork.cpp.o ../../../../lib/libRDKitScaffoldNetwork.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitMolStandardize.so.1.2023.03.2 ../../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl In member function '__ct ', inlined from 'dereference' at /usr/include/boost/python/stl_iterator.hpp:48:61, inlined from 'dereference' at /usr/include/boost/iterator/iterator_facade.hpp:550:32, inlined from 'operator*' at /usr/include/boost/iterator/iterator_facade.hpp:656:69, inlined from '_M_range_initialize' at /usr/include/c++/13/bits/stl_vector.h:1670:20, inlined from '__ct ' at /usr/include/c++/13/bits/stl_vector.h:708:23, inlined from 'pythonObjectToVect' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDBoost/Wrap.h:140:15: /usr/include/boost/smart_ptr/shared_ptr.hpp:458:66: warning: 'MEM[(const struct shared_ptr &)&D.12775 + 24].px' may be used uninitialized [-Wmaybe-uninitialized] 458 | shared_ptr( shared_ptr const & r ) BOOST_SP_NOEXCEPT : px( r.px ), pn( r.pn ) | ^ /usr/include/boost/python/stl_iterator.hpp: In function 'pythonObjectToVect': /usr/include/boost/python/stl_iterator.hpp:48:16: note: '' declared here 48 | return extract(this->impl_.current().get())(); | ^ gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 98%] Built target rdScaffoldNetwork /usr/bin/gmake -f Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/build.make Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/build.make Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 98%] Building CXX object Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/rdTautomerQuery.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery/Wrap && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdTautomerQuery_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/rdTautomerQuery.cpp.o -MF CMakeFiles/rdTautomerQuery.dir/rdTautomerQuery.cpp.o.d -o CMakeFiles/rdTautomerQuery.dir/rdTautomerQuery.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery/Wrap/rdTautomerQuery.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery/Wrap/rdTautomerQuery.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 98%] Linking CXX executable tautomerQueryTestCatch cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery && /usr/bin/cmake -E cmake_link_script CMakeFiles/tautomerQueryTestCatch.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/tautomerQueryTestCatch.dir/catch_tests.cpp.o -o tautomerQueryTestCatch ../../RDGeneral/librdkitCatch.so ../../../lib/libRDKitTautomerQuery.so.1.2023.03.2 ../../../lib/libRDKitMolStandardize.so.1.2023.03.2 ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.78.0 gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 98%] Built target tautomerQueryTestCatch /usr/bin/gmake -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 98%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTLIBRARY_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructLibrary_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o -MF CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o.d -o CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/SubstructLibrary.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/SubstructLibrary.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 99%] Linking CXX shared module ../../../../rdkit/Chem/rdTautomerQuery.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdTautomerQuery.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/rdTautomerQuery.so CMakeFiles/rdTautomerQuery.dir/rdTautomerQuery.cpp.o ../../../../lib/libRDKitTautomerQuery.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitMolStandardize.so.1.2023.03.2 ../../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 99%] Built target rdTautomerQuery [ 99%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/PatternFactory.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTLIBRARY_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructLibrary_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/PatternFactory.cpp.o -MF CMakeFiles/SubstructLibrary.dir/PatternFactory.cpp.o.d -o CMakeFiles/SubstructLibrary.dir/PatternFactory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/PatternFactory.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/PatternFactory.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 99%] Linking CXX shared library ../../../lib/libRDKitSubstructLibrary.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_link_script CMakeFiles/SubstructLibrary.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitSubstructLibrary.so.1 -o ../../../lib/libRDKitSubstructLibrary.so.1.2023.03.2 CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o CMakeFiles/SubstructLibrary.dir/PatternFactory.cpp.o ../../../lib/libRDKitTautomerQuery.so.1.2023.03.2 ../../../lib/libRDKitMolStandardize.so.1.2023.03.2 ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.78.0 cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubstructLibrary.so.1.2023.03.2 ../../../lib/libRDKitSubstructLibrary.so.1 ../../../lib/libRDKitSubstructLibrary.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 99%] Built target SubstructLibrary /usr/bin/gmake -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/depend /usr/bin/gmake -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryCatchTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryCatchTest.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/DependInfo.cmake --color= gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryCatchTest.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryCatchTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryCatchTest.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 99%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o -MF CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o.d -o CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/substructLibraryTest.cpp [ 99%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryCatchTest.dir/catch_tests.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryCatchTest.dir/catch_tests.cpp.o -MF CMakeFiles/substructLibraryCatchTest.dir/catch_tests.cpp.o.d -o CMakeFiles/substructLibraryCatchTest.dir/catch_tests.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/catch_tests.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/catch_tests.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/substructLibraryTest.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [100%] Linking CXX executable substructLibraryCatchTest cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_link_script CMakeFiles/substructLibraryCatchTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/substructLibraryCatchTest.dir/catch_tests.cpp.o -o substructLibraryCatchTest ../../RDGeneral/librdkitCatch.so ../../../lib/libRDKitSubstructLibrary.so.1.2023.03.2 ../../../lib/libRDKitTautomerQuery.so.1.2023.03.2 ../../../lib/libRDKitMolStandardize.so.1.2023.03.2 ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.78.0 [100%] Linking CXX executable substructLibraryTest cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_link_script CMakeFiles/substructLibraryTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o -o substructLibraryTest ../../../lib/libRDKitSubstructLibrary.so.1.2023.03.2 ../../../lib/libRDKitTautomerQuery.so.1.2023.03.2 ../../../lib/libRDKitMolStandardize.so.1.2023.03.2 ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [100%] Built target substructLibraryCatchTest /usr/bin/gmake -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [100%] Building CXX object Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSubstructLibrary_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o -MF CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o.d -o CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/Wrap/rdSubstructLibrary.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/Wrap/rdSubstructLibrary.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [100%] Built target substructLibraryTest [100%] Building CXX object Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSubstructLibrary_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o -MF CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o.d -o CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/Wrap/SubstructLibraryWrap.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/Wrap/SubstructLibraryWrap.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [100%] Linking CXX shared module ../../../../rdkit/Chem/rdSubstructLibrary.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSubstructLibrary.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/rdSubstructLibrary.so CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o ../../../../lib/libRDKitSubstructLibrary.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitTautomerQuery.so.1.2023.03.2 ../../../../lib/libRDKitMolStandardize.so.1.2023.03.2 ../../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [100%] Built target rdSubstructLibrary gmake[1]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/rdkit-Release_2023_03_2/CMakeFiles 0 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.YI1Mfr + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64 ++ dirname /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd rdkit-Release_2023_03_2 + DESTDIR=/builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64 + /usr/bin/cmake --install . -- Install configuration: "Release" -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/rdBase.so -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/CTestTestfile.cmake -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/cmake_install.cmake -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/Makefile -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/RDPaths.py -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/utils -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/utils/spiral.py -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/utils/retest.txt -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/utils/listutils.py -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/utils/fileutils.py -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/utils/comhack.py -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/utils/chemutils.py -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/utils/chemdraw_qax.py -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/utils/chemdraw.py -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/utils/cactvs.py -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/utils/__init__.py -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/sping -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/sping/utils.py -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/sping/util -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/sping/util/__init__.py -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/sping/util/HTMLPiddler.py -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/sping/tests -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/sping/tests/testallps.py -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/sping/tests/pstests.py -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/sping/tests/pidtest.py -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/sping/tests/__init__.py -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/sping/stringformat.py -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/sping/pid.py -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/sping/patches -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/sping/patches/Imaging-1.1.1.diff -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/sping/patches/Imaging-1.1-fixplugin-path -- Installing: 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/builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/include/rdkit/GraphMol/RGroupDecomposition/RGroupDecompParams.h -- Up-to-date: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/rdRGroupDecomposition.so -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/libRDKitSLNParse.so.1.2023.03.2 -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/libRDKitSLNParse.so.1 -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/libRDKitSLNParse.so -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/include/rdkit/GraphMol/SLNParse/SLNAttribs.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/include/rdkit/GraphMol/SLNParse/SLNParse.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/include/rdkit/GraphMol/SLNParse/SLNParseOps.h -- Up-to-date: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/rdSLNParse.so -- Up-to-date: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/rdchem.so -- Up-to-date: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/rdmolops.so -- Up-to-date: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/rdqueries.so -- Up-to-date: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/rdmolfiles.so -- Up-to-date: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/rdtrajectory.so -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/libRDKitMolStandardize.so.1.2023.03.2 -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/libRDKitMolStandardize.so.1 -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/libRDKitMolStandardize.so -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/include/rdkit/GraphMol/MolStandardize/MolStandardize.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/include/rdkit/GraphMol/MolStandardize/Metal.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/include/rdkit/GraphMol/MolStandardize/Normalize.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/include/rdkit/GraphMol/MolStandardize/Validate.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/include/rdkit/GraphMol/MolStandardize/Charge.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/include/rdkit/GraphMol/MolStandardize/Tautomer.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/include/rdkit/GraphMol/MolStandardize/Fragment.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/include/rdkit/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogEntry.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/include/rdkit/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogParams.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/include/rdkit/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogUtils.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/include/rdkit/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogEntry.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/include/rdkit/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogParams.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/include/rdkit/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogUtils.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/include/rdkit/GraphMol/MolStandardize/TransformCatalog/TransformCatalogEntry.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/include/rdkit/GraphMol/MolStandardize/TransformCatalog/TransformCatalogParams.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/include/rdkit/GraphMol/MolStandardize/TransformCatalog/TransformCatalogUtils.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/include/rdkit/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogEntry.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/include/rdkit/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogParams.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/include/rdkit/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogUtils.h -- Up-to-date: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/MolStandardize/rdMolStandardize.so -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/libRDKitScaffoldNetwork.so.1.2023.03.2 -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/libRDKitScaffoldNetwork.so.1 -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/libRDKitScaffoldNetwork.so -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/include/rdkit/GraphMol/ScaffoldNetwork/ScaffoldNetwork.h -- Up-to-date: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/Scaffolds/rdScaffoldNetwork.so -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/libRDKitMolEnumerator.so.1.2023.03.2 -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/libRDKitMolEnumerator.so.1 -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/libRDKitMolEnumerator.so -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/include/rdkit/GraphMol/MolEnumerator/MolEnumerator.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/include/rdkit/GraphMol/MolEnumerator/LinkNode.h -- Up-to-date: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/rdMolEnumerator.so -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/libRDKitAbbreviations.so.1.2023.03.2 -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/libRDKitAbbreviations.so.1 -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/libRDKitAbbreviations.so -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/include/rdkit/GraphMol/Abbreviations/Abbreviations.h -- Up-to-date: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/rdAbbreviations.so -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/include/rdkit/Query/AndQuery.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/include/rdkit/Query/EqualityQuery.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/include/rdkit/Query/GreaterEqualQuery.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/include/rdkit/Query/GreaterQuery.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/include/rdkit/Query/LessEqualQuery.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/include/rdkit/Query/LessQuery.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/include/rdkit/Query/NullQueryAlgebra.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/include/rdkit/Query/OrQuery.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/include/rdkit/Query/Query.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/include/rdkit/Query/QueryObjects.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/include/rdkit/Query/RangeQuery.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/include/rdkit/Query/SetQuery.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/include/rdkit/Query/XOrQuery.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/include/rdkit/Features/Feature.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/include/rdkit/DataManip/MetricMatrixCalc/MetricFuncs.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/include/rdkit/DataManip/MetricMatrixCalc/MetricMatrixCalc.h -- Up-to-date: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.so -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/libRDKitSimDivPickers.so.1.2023.03.2 -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/libRDKitSimDivPickers.so.1 -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/libRDKitSimDivPickers.so -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/include/rdkit/SimDivPickers/DistPicker.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/include/rdkit/SimDivPickers/LeaderPicker.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/include/rdkit/SimDivPickers/HierarchicalClusterPicker.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/include/rdkit/SimDivPickers/MaxMinPicker.h -- Up-to-date: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/SimDivFilters/rdSimDivPickers.so -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/libRDKithc.so.1.2023.03.2 -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/libRDKithc.so.1 -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/libRDKithc.so -- Up-to-date: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/ML/Cluster/Clustering.so -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/libRDKitInfoTheory.so.1.2023.03.2 -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/libRDKitInfoTheory.so.1 -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/libRDKitInfoTheory.so -- Up-to-date: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/ML/InfoTheory/rdInfoTheory.so -- Up-to-date: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/ML/Data/cQuantize.so -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/libRDKitChemicalFeatures.so.1.2023.03.2 -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/libRDKitChemicalFeatures.so.1 -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/libRDKitChemicalFeatures.so -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/include/rdkit/ChemicalFeatures/ChemicalFeature.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/include/rdkit/ChemicalFeatures/FreeChemicalFeature.h -- Up-to-date: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/rdChemicalFeatures.so ===================================================================== PostgreSQL cartridge installation succeeded. ===================================================================== Restart the PostgreSQL service before using the PostgreSQL RDKit cartridge. ===================================================================== -- Up-to-date: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/RDPaths.py + mkdir -p /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/share/pgsql/extension + install -pm 644 Code/PgSQL/rdkit/rdkit--4.3.0.sql /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/share/pgsql/extension/ + install -pm 644 Code/PgSQL/rdkit/rdkit.control /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/share/pgsql/extension/ + install -pm 644 Code/PgSQL/rdkit/update_sql/rdkit--3.8--4.0.sql Code/PgSQL/rdkit/update_sql/rdkit--4.0--4.0.1.sql Code/PgSQL/rdkit/update_sql/rdkit--4.0.1--4.1.sql Code/PgSQL/rdkit/update_sql/rdkit--4.1--4.1.1.sql Code/PgSQL/rdkit/update_sql/rdkit--4.1.1--4.2.sql Code/PgSQL/rdkit/update_sql/rdkit--4.2--4.3.0.sql /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/share/pgsql/extension/ + install -Dpm 755 Code/PgSQL/rdkit/librdkit.so /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/pgsql/rdkit.so + chrpath -d /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/pgsql/rdkit.so + rm -r /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/share/RDKit + FMCS=/builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/fmcs/fmcs + sed '1{\@^#!/usr/bin/python3@d}' /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/fmcs/fmcs.py + touch -r /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/fmcs/fmcs.py /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/fmcs/fmcs.new + mv /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/fmcs/fmcs.new /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/fmcs/fmcs.py + rm /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/fmcs/fmcs + install -pm 755 Code/RDGeneral/librdkitCatch.so /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/librdkitCatch.so.1.2023.03.2 + install -pm 755 Code/RDGeneral/librdkitCatch.so /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/librdkitCatch.so.1 + install -pm 755 Code/RDGeneral/librdkitCatch.so /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/librdkitCatch.so + pushd /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64 ~/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64 ~/build/BUILD/rdkit-Release_2023_03_2 + ln -fs librdkitCatch.so.1.2023.03.2 librdkitCatch.so + ln -fs librdkitCatch.so.1.2023.03.2 librdkitCatch.so.1 + popd ~/build/BUILD/rdkit-Release_2023_03_2 + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 2023.03.2-1.fc38 --unique-debug-suffix -2023.03.2-1.fc38.x86_64 --unique-debug-src-base rdkit-2023.03.2-1.fc38.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/rdkit-Release_2023_03_2 extracting debug info from /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/libRDKitAbbreviations.so.1.2023.03.2 extracting debug info from /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/libRDKitAlignment.so.1.2023.03.2 /usr/bin/gdb.minimal /usr/bin/gdb.minimal extracting debug info from 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/builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/DataStructs/cDataStructs.so extracting debug info from /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/DistanceGeometry/DistGeom.so /usr/bin/gdb.minimal /usr/bin/gdb.minimal extracting debug info from /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/ForceField/rdForceField.so /usr/bin/gdb.minimal extracting debug info from /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/Geometry/rdGeometry.so /usr/bin/gdb.minimal extracting debug info from /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/ML/Cluster/Clustering.so extracting debug info from /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/ML/Data/cQuantize.so /usr/bin/gdb.minimal /usr/bin/gdb.minimal extracting debug info from /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/ML/InfoTheory/rdInfoTheory.so extracting debug info from /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/Numerics/rdAlignment.so /usr/bin/gdb.minimal /usr/bin/gdb.minimal extracting debug info from /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/SimDivFilters/rdSimDivPickers.so /usr/bin/gdb.minimal extracting debug info from /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/rdBase.so /usr/bin/gdb.minimal original debug info size: 713064kB, size after compression: 559200kB /usr/bin/sepdebugcrcfix: Updated 105 CRC32s, 0 CRC32s did match. cpio: Code/GraphMol/SmilesParse/C:/Users/glandrum/RDKit_git/Code/GraphMol/SmilesParse/smiles.tab.hpp: Cannot stat: No such file or directory 21036 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs *** WARNING: ./usr/src/debug/rdkit-2023.03.2-1.fc38.x86_64/Code/GraphMol/MolDraw2D/DrawMol.h is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/rdkit-2023.03.2-1.fc38.x86_64/Code/GraphMol/MolDraw2D/DrawMol.cpp is executable but has no shebang, removing executable bit + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib/debug/usr/lib64/python3.11 using python3.11 Bytecompiling .py files below /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11 using python3.11 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.WX7mcu + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd rdkit-Release_2023_03_2 + export LD_LIBRARY_PATH=/builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64 + LD_LIBRARY_PATH=/builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64 + export PYTHONPATH=/builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages + PYTHONPATH=/builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages + export RDBASE=/builddir/build/BUILD/rdkit-Release_2023_03_2 + RDBASE=/builddir/build/BUILD/rdkit-Release_2023_03_2 + /usr/bin/ctest --test-dir . --output-on-failure --force-new-ctest-process -j2 -- -E 'pythonTestDirChem|pythonTestDirDBase|testPgSQL' Test project /builddir/build/BUILD/rdkit-Release_2023_03_2 Start 1: testInchi Start 2: testDict 1/198 Test #2: testDict ............................... Passed 2.95 sec Start 3: testRDValue 2/198 Test #3: testRDValue ............................ Passed 0.01 sec Start 4: testConcurrentQueue 3/198 Test #1: testInchi .............................. Passed 16.65 sec Start 5: dictTestsCatch 4/198 Test #5: dictTestsCatch ......................... Passed 0.00 sec Start 6: logTestsCatch 5/198 Test #6: logTestsCatch .......................... Passed 0.00 sec Start 7: testDataStructs 6/198 Test #7: testDataStructs ........................ Passed 0.01 sec Start 8: testFPB 7/198 Test #8: testFPB ................................ Passed 0.01 sec Start 9: testMultiFPB 8/198 Test #9: testMultiFPB ........................... Passed 0.01 sec Start 10: pyBV 9/198 Test #10: pyBV ................................... Passed 3.05 sec Start 11: pyDiscreteValueVect 10/198 Test #11: pyDiscreteValueVect .................... Passed 0.16 sec Start 12: pySparseIntVect 11/198 Test #12: pySparseIntVect ........................ Passed 0.17 sec Start 13: pyFPB 12/198 Test #13: pyFPB .................................. Passed 0.17 sec Start 14: testTransforms 13/198 Test #14: testTransforms ......................... Passed 0.01 sec Start 15: testGrid 14/198 Test #15: testGrid ............................... Passed 0.02 sec Start 16: geometryTestsCatch 15/198 Test #16: geometryTestsCatch ..................... Passed 0.01 sec Start 17: testPyGeometry 16/198 Test #17: testPyGeometry ......................... Passed 0.18 sec Start 18: testMatrices 17/198 Test #18: testMatrices ........................... Passed 0.00 sec Start 19: testConrec 18/198 Test #19: testConrec ............................. Passed 0.02 sec Start 20: testAlignment 19/198 Test #20: testAlignment .......................... Passed 0.01 sec Start 21: pyAlignment 20/198 Test #21: pyAlignment ............................ Passed 0.16 sec Start 22: testOptimizer 21/198 Test #22: testOptimizer .......................... Passed 0.00 sec Start 23: testUFFForceField 22/198 Test #23: testUFFForceField ...................... Passed 0.21 sec Start 24: testMMFFForceField 23/198 Test #4: testConcurrentQueue .................... Passed 26.96 sec Start 25: pyForceFieldConstraints 24/198 Test #24: testMMFFForceField ..................... Passed 9.30 sec Start 26: testDistGeom 25/198 Test #26: testDistGeom ........................... Passed 0.01 sec Start 27: pyDistGeom 26/198 Test #27: pyDistGeom ............................. Passed 0.10 sec Start 28: graphmolTest1 27/198 Test #25: pyForceFieldConstraints ................ Passed 0.70 sec Start 29: graphmolcpTest 28/198 Test #29: graphmolcpTest ......................... Passed 0.02 sec Start 30: graphmolqueryTest 29/198 Test #30: graphmolqueryTest ...................... Passed 0.02 sec Start 31: graphmolMolOpsTest 30/198 Test #31: graphmolMolOpsTest ..................... Passed 0.72 sec Start 32: graphmoltestChirality 31/198 Test #32: graphmoltestChirality .................. Passed 0.05 sec Start 33: graphmoltestPickler 32/198 Test #33: graphmoltestPickler .................... Passed 0.20 sec Start 34: graphmoltestPicklerGlobalSetting 33/198 Test #34: graphmoltestPicklerGlobalSetting ....... Passed 0.02 sec Start 35: graphmolIterTest 34/198 Test #35: graphmolIterTest ....................... Passed 0.02 sec Start 36: hanoiTest 35/198 Test #36: hanoiTest .............................. Passed 2.20 sec Start 37: graphmolMemTest1 36/198 Test #37: graphmolMemTest1 ....................... Passed 0.01 sec Start 38: resMolSupplierTest 37/198 Test #38: resMolSupplierTest ..................... Passed 3.05 sec Start 39: molBundleTest 38/198 Test #39: molBundleTest .......................... Passed 0.02 sec Start 40: testSGroup 39/198 Test #40: testSGroup ............................. Passed 0.02 sec Start 41: test-valgrind 40/198 Test #41: test-valgrind .......................... Passed 0.02 sec Start 42: graphmolTestsCatch 41/198 Test #42: graphmolTestsCatch ..................... Passed 0.06 sec Start 43: graphmolOrganometallicsCatch 42/198 Test #43: graphmolOrganometallicsCatch ........... Passed 0.03 sec Start 44: graphmolSGroupCatch 43/198 Test #44: graphmolSGroupCatch .................... Passed 0.02 sec Start 45: graphmolAdjustQueryCatch 44/198 Test #45: graphmolAdjustQueryCatch ............... Passed 0.04 sec Start 46: chiralityTestsCatch 45/198 Test #46: chiralityTestsCatch .................... Passed 0.05 sec Start 47: canonTestsCatch 46/198 Test #47: canonTestsCatch ........................ Passed 0.02 sec Start 48: moliteratorTestsCatch 47/198 Test #48: moliteratorTestsCatch .................. Passed 0.02 sec Start 49: queryTestsCatch 48/198 Test #49: queryTestsCatch ........................ Passed 0.02 sec Start 50: smiTest1 49/198 Test #50: smiTest1 ............................... Passed 0.15 sec Start 51: smiTest2 50/198 Test #51: smiTest2 ............................... Passed 0.01 sec Start 52: cxsmilesTest 51/198 Test #52: cxsmilesTest ........................... Passed 0.02 sec Start 53: smaTest1 52/198 Test #53: smaTest1 ............................... Passed 0.10 sec Start 54: smiTestCatch 53/198 Test #54: smiTestCatch ........................... Passed 0.09 sec Start 55: nontetrahedralCatch 54/198 Test #55: nontetrahedralCatch .................... Passed 0.04 sec Start 56: testDepictor 55/198 Test #56: testDepictor ........................... Passed 0.28 sec Start 57: depictorCatch 56/198 Test #57: depictorCatch .......................... Passed 0.04 sec Start 58: pyDepictor 57/198 Test #58: pyDepictor ............................. Passed 0.39 sec Start 59: fileParsersTest1 58/198 Test #59: fileParsersTest1 ....................... Passed 5.25 sec Start 60: testMolSupplier 59/198 Test #60: testMolSupplier ........................ Passed 0.18 sec Start 61: testGeneralFileReader 60/198 Test #61: testGeneralFileReader .................. Passed 0.08 sec Start 62: testMultithreadedMolSupplier 61/198 Test #28: graphmolTest1 .......................... Passed 14.09 sec Start 63: testMolWriter 62/198 Test #63: testMolWriter .......................... Passed 0.22 sec Start 64: testTplParser 63/198 Test #64: testTplParser .......................... Passed 0.02 sec Start 65: testMol2ToMol 64/198 Test #65: testMol2ToMol .......................... Passed 0.03 sec Start 66: testSequence 65/198 Test #66: testSequence ........................... Passed 0.03 sec Start 67: testExtendedStereoParsing 66/198 Test #67: testExtendedStereoParsing .............. Passed 0.02 sec Start 68: fileParsersCatchTest 67/198 Test #68: fileParsersCatchTest ................... Passed 0.12 sec Start 69: testPropertyLists 68/198 Test #69: testPropertyLists ...................... Passed 0.02 sec Start 70: XYZFileParserCatchTest 69/198 Test #70: XYZFileParserCatchTest ................. Passed 0.02 sec Start 71: cdxmlParserCatchTest 70/198 Test #71: cdxmlParserCatchTest ................... Passed 0.10 sec Start 72: molfileStereoCatchTest 71/198 Test #72: molfileStereoCatchTest ................. Passed 0.02 sec Start 73: testSubstructMatch 72/198 Test #73: testSubstructMatch ..................... Passed 0.27 sec Start 74: substructTestCatch 73/198 Test #74: substructTestCatch ..................... Passed 0.22 sec Start 75: testGenericGroups 74/198 Test #75: testGenericGroups ...................... Passed 0.04 sec Start 76: testReaction 75/198 Test #76: testReaction ........................... Passed 0.39 sec Start 77: testReactionFingerprints 76/198 Test #77: testReactionFingerprints ............... Passed 0.05 sec Start 78: testEnumeration 77/198 Test #62: testMultithreadedMolSupplier ........... Passed 5.52 sec Start 79: rxnTestCatch 78/198 Test #79: rxnTestCatch ........................... Passed 0.05 sec Start 80: pyChemReactions 79/198 Test #80: pyChemReactions ........................ Passed 0.31 sec Start 81: pyChemReactionEnumerations 80/198 Test #81: pyChemReactionEnumerations ............. Passed 1.02 sec Start 82: pyChemReactionSanitize 81/198 Test #82: pyChemReactionSanitize ................. Passed 0.22 sec Start 83: testChemTransforms 82/198 Test #83: testChemTransforms ..................... Passed 0.05 sec Start 84: chemTransformsTestCatch 83/198 Test #84: chemTransformsTestCatch ................ Passed 0.07 sec Start 85: tautomerQueryTestCatch 84/198 Test #85: tautomerQueryTestCatch ................. Passed 0.12 sec Start 86: pyTautomerQuery 85/198 Test #86: pyTautomerQuery ........................ Passed 0.21 sec Start 87: testSubgraphs1 86/198 Test #87: testSubgraphs1 ......................... Passed 0.22 sec Start 88: testSubgraphs2 87/198 Test #88: testSubgraphs2 ......................... Passed 0.02 sec Start 89: subgraphsCatch 88/198 Test #89: subgraphsCatch ......................... Passed 0.02 sec Start 90: filterCatalogTest 89/198 Test #90: filterCatalogTest ...................... Passed 0.15 sec Start 91: pyFilterCatalog 90/198 Test #91: pyFilterCatalog ........................ Passed 0.74 sec Start 92: testFragCatalog 91/198 Test #78: testEnumeration ........................ Passed 6.98 sec Start 93: pyFragCatalog 92/198 Test #92: testFragCatalog ........................ Passed 0.44 sec Start 94: testDescriptors 93/198 Test #93: pyFragCatalog .......................... Passed 0.22 sec Start 95: testAUTOCORR2D 94/198 Test #95: testAUTOCORR2D ......................... Passed 0.51 sec Start 96: testATF 95/198 Test #96: testATF ................................ Passed 0.03 sec Start 97: testBCUT 96/198 Test #97: testBCUT ............................... Passed 0.90 sec Start 98: descriptorsTestCatch 97/198 Test #98: descriptorsTestCatch ................... Passed 0.07 sec Start 99: pyMolDescriptors 98/198 Test #99: pyMolDescriptors ....................... Passed 0.59 sec Start 100: pyMolDescriptors3D 99/198 Test #100: pyMolDescriptors3D ..................... Passed 0.52 sec Start 101: testFingerprints 100/198 Test #94: testDescriptors ........................ Passed 3.45 sec Start 102: testMHFPFingerprint 101/198 Test #102: testMHFPFingerprint .................... Passed 0.14 sec Start 103: testFingerprintGenerators 102/198 Test #103: testFingerprintGenerators .............. Passed 1.36 sec Start 104: fpTestCatch 103/198 Test #104: fpTestCatch ............................ Passed 0.07 sec Start 105: fpGenTestCatch 104/198 Test #105: fpGenTestCatch ......................... Passed 0.05 sec Start 106: pyTestGenerator 105/198 Test #106: pyTestGenerator ........................ Passed 0.57 sec Start 107: pyTestMHFP 106/198 Test #107: pyTestMHFP ............................. Passed 0.50 sec Start 108: testPartialCharges 107/198 Test #108: testPartialCharges ..................... Passed 0.05 sec Start 109: pyPartialCharges 108/198 Test #109: pyPartialCharges ....................... Passed 0.60 sec Start 110: testMolTransforms 109/198 Test #110: testMolTransforms ...................... Passed 0.06 sec Start 111: pyMolTransforms 110/198 Test #111: pyMolTransforms ........................ Passed 0.54 sec Start 112: testMMFFForceFieldHelpers 111/198 Test #101: testFingerprints ....................... Passed 6.21 sec Start 113: testMMFFForceFieldHelpersMultiThread 112/198 Test #113: testMMFFForceFieldHelpersMultiThread ... Passed 0.52 sec Start 114: testUFFForceFieldHelpers 113/198 Test #112: testMMFFForceFieldHelpers .............. Passed 7.95 sec Start 115: testCrystalForceField 114/198 Test #115: testCrystalForceField .................. Passed 0.07 sec Start 116: pyForceFieldHelpers 115/198 Test #116: pyForceFieldHelpers .................... Passed 0.39 sec Start 117: testDistGeomHelpers 116/198 Test #114: testUFFForceFieldHelpers ............... Passed 7.44 sec Start 118: distGeomHelpersCatch 117/198 Test #118: distGeomHelpersCatch ................... Passed 81.92 sec Start 119: pyDistGeomHelpers 118/198 Test #119: pyDistGeomHelpers ...................... Passed 38.73 sec Start 120: testMolAlign 119/198 Test #120: testMolAlign ........................... Passed 0.10 sec Start 121: testO3AAlign 120/198 Test #121: testO3AAlign ........................... Passed 33.27 sec Start 122: molAlignCatchTest 121/198 Test #122: molAlignCatchTest ...................... Passed 0.02 sec Start 123: pyMolAlign 122/198 Test #117: testDistGeomHelpers .................... Passed 163.80 sec Start 124: testFeatures 123/198 Test #124: testFeatures ........................... Passed 0.02 sec Start 125: pyChemicalFeatures 124/198 Test #123: pyMolAlign ............................. Passed 8.73 sec Start 126: testShapeHelpers 125/198 Test #126: testShapeHelpers ....................... Passed 0.02 sec Start 127: pyShapeHelpers 126/198 Test #127: pyShapeHelpers ......................... Passed 0.22 sec Start 128: testMolCatalog 127/198 Test #125: pyChemicalFeatures ..................... Passed 0.26 sec Start 129: pyMolCatalog 128/198 Test #128: testMolCatalog ......................... Passed 0.02 sec Start 130: moldraw2DTest1 129/198 Test #129: pyMolCatalog ........................... Passed 0.19 sec Start 131: moldraw2DTestCatch 130/198 Test #131: moldraw2DTestCatch ..................... Passed 3.20 sec Start 132: moldraw2DRxnTest1 131/198 Test #132: moldraw2DRxnTest1 ...................... Passed 0.87 sec Start 133: pyMolDraw2D 132/198 Test #133: pyMolDraw2D ............................ Passed 1.00 sec Start 134: testFMCS 133/198 Test #130: moldraw2DTest1 ......................... Passed 9.63 sec Start 135: pyFMCS 134/198 Test #134: testFMCS ............................... Passed 4.51 sec Start 136: FMCStest 135/198 Test #136: FMCStest ............................... Passed 0.02 sec Start 137: molHashCatchTest 136/198 Test #137: molHashCatchTest ....................... Passed 0.04 sec Start 138: pyMolHash 137/198 Test #138: pyMolHash .............................. Passed 0.19 sec Start 139: testMMPA 138/198 Test #139: testMMPA ............................... Passed 0.08 sec Start 140: pyMMPA 139/198 Test #140: pyMMPA ................................. Passed 1.02 sec Start 141: testCIPLabeler 140/198 Test #141: testCIPLabeler ......................... Passed 0.09 sec Start 142: pyCIPLabelsWrapTest 141/198 Test #142: pyCIPLabelsWrapTest .................... Passed 0.18 sec Start 143: pyCIPLabelsValidation 142/198 Test #135: pyFMCS ................................. Passed 3.06 sec Start 144: deprotectTest 143/198 Test #144: deprotectTest .......................... Passed 0.05 sec Start 145: pyDeprotect 144/198 Test #145: pyDeprotect ............................ Passed 0.20 sec Start 146: testReducedGraphs 145/198 Test #146: testReducedGraphs ...................... Passed 0.05 sec Start 147: pyReducedGraphs 146/198 Test #147: pyReducedGraphs ........................ Passed 0.19 sec Start 148: trajectoryTest 147/198 Test #148: trajectoryTest ......................... Passed 0.21 sec Start 149: substructLibraryTest 148/198 Test #143: pyCIPLabelsValidation .................. Passed 5.03 sec Start 150: substructLibraryCatchTest 149/198 Test #150: substructLibraryCatchTest .............. Passed 0.02 sec Start 151: pySubstructLibrary 150/198 Test #149: substructLibraryTest ................... Passed 4.16 sec Start 152: testRGroupDecomp 151/198 Test #151: pySubstructLibrary ..................... Passed 3.62 sec Start 153: testRGroupDecompInternals 152/198 Test #153: testRGroupDecompInternals .............. Passed 0.02 sec Start 154: rgroupCatchTests 153/198 Test #154: rgroupCatchTests ....................... Passed 0.14 sec Start 155: pyRGroupDecomposition 154/198 Test #155: pyRGroupDecomposition .................. Passed 1.43 sec Start 156: testSLNParse 155/198 Test #156: testSLNParse ........................... Passed 0.02 sec Start 157: pySLNParse 156/198 Test #157: pySLNParse ............................. Passed 0.18 sec Start 158: pyGraphMolWrap 157/198 Test #152: testRGroupDecomp ....................... Passed 5.27 sec Start 159: pyTestConformerWrap 158/198 Test #159: pyTestConformerWrap .................... Passed 0.19 sec Start 160: pyTestTrajectory 159/198 Test #160: pyTestTrajectory ....................... Passed 0.39 sec Start 161: pyTestSGroups 160/198 Test #161: pyTestSGroups .......................... Passed 0.20 sec Start 162: pyTestThreads 161/198 Test #162: pyTestThreads .......................... Passed 0.20 sec Start 163: pyTestMultithreadedMolSupplier 162/198 Test #163: pyTestMultithreadedMolSupplier ......... Passed 0.24 sec Start 164: pyTestPropertyLists 163/198 Test #164: pyTestPropertyLists .................... Passed 0.19 sec Start 165: pyCDXMLTest 164/198 Test #165: pyCDXMLTest ............................ Passed 0.20 sec Start 166: molStandardizeTest 165/198 Test #166: molStandardizeTest ..................... Passed 0.70 sec Start 167: molNormalizeTest 166/198 Test #167: molNormalizeTest ....................... Passed 0.09 sec Start 168: molValidateTest 167/198 Test #168: molValidateTest ........................ Passed 0.03 sec Start 169: molChargeTest 168/198 Test #169: molChargeTest .......................... Passed 0.06 sec Start 170: molTautomerTest 169/198 Test #170: molTautomerTest ........................ Passed 1.65 sec Start 171: molStandardizeSmallTest 170/198 Test #171: molStandardizeSmallTest ................ Passed 0.03 sec Start 172: molFragmentTest 171/198 Test #172: molFragmentTest ........................ Passed 0.03 sec Start 173: molStandardizeCatchTest 172/198 Test #173: molStandardizeCatchTest ................ Passed 0.14 sec Start 174: pyMolStandardize 173/198 Test #174: pyMolStandardize ....................... Passed 1.58 sec Start 175: testScaffoldNetwork 174/198 Test #175: testScaffoldNetwork .................... Passed 0.65 sec Start 176: pyScaffoldNetwork 175/198 Test #176: pyScaffoldNetwork ...................... Passed 0.20 sec Start 177: pyScaffoldNetworkPickling 176/198 Test #177: pyScaffoldNetworkPickling .............. Passed 0.18 sec Start 178: testMolEnumerator 177/198 Test #178: testMolEnumerator ...................... Passed 0.04 sec Start 179: pyMolEnumerator 178/198 Test #179: pyMolEnumerator ........................ Passed 0.18 sec Start 180: testAbbreviations 179/198 Test #180: testAbbreviations ...................... Passed 0.03 sec Start 181: pyAbbreviations 180/198 Test #181: pyAbbreviations ........................ Passed 0.18 sec Start 182: testQuery 181/198 Test #182: testQuery .............................. Passed 0.00 sec Start 183: testMatCalc 182/198 Test #183: testMatCalc ............................ Passed 0.00 sec Start 184: pyMatCalc 183/198 Test #184: pyMatCalc .............................. Passed 0.44 sec Start 185: testSimDivPickers 184/198 Test #185: testSimDivPickers ...................... Passed 0.00 sec Start 186: pickersTestsCatch 185/198 Test #186: pickersTestsCatch ...................... Passed 0.06 sec Start 187: pySimDivPickers 186/198 Test #158: pyGraphMolWrap ......................... Passed 9.40 sec Start 188: pyRanker 187/198 Test #188: pyRanker ............................... Passed 0.18 sec Start 189: testChemicalFeatures 188/198 Test #189: testChemicalFeatures ................... Passed 0.00 sec Start 190: pyFeatures 189/198 Test #190: pyFeatures ............................. Passed 0.18 sec Start 191: pythonTestDbCLI 190/198 Test #187: pySimDivPickers ........................ Passed 0.92 sec Start 192: pythonTestDirRoot 191/198 Test #192: pythonTestDirRoot ...................... Passed 0.20 sec Start 193: pythonTestDirML 192/198 Test #193: pythonTestDirML ........................ Passed 8.59 sec Start 194: pythonTestDirDataStructs 193/198 Test #194: pythonTestDirDataStructs ............... Passed 0.76 sec Start 195: pythonTestDirDbase 194/198 Test #195: pythonTestDirDbase ..................... Passed 0.44 sec Start 196: pythonTestDirSimDivFilters 195/198 Test #196: pythonTestDirSimDivFilters ............. Passed 0.25 sec Start 197: pythonTestDirVLib 196/198 Test #197: pythonTestDirVLib ...................... Passed 0.42 sec Start 198: pythonTestSping 197/198 Test #191: pythonTestDbCLI ........................ Passed 10.86 sec 198/198 Test #198: pythonTestSping ........................ Passed 0.32 sec 100% tests passed, 0 tests failed out of 198 Total Test time (real) = 275.68 sec + RPM_EC=0 ++ jobs -p + exit 0 Processing files: rdkit-2023.03.2-1.fc38.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.BUV3XU + umask 022 + cd /builddir/build/BUILD + cd rdkit-Release_2023_03_2 + DOCDIR=/builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/share/doc/rdkit + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/share/doc/rdkit + cp -pr ReleaseNotes.md /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/share/doc/rdkit + cp -pr README README.md /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/share/doc/rdkit + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.mGxyMg + umask 022 + cd /builddir/build/BUILD + cd rdkit-Release_2023_03_2 + LICENSEDIR=/builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/share/licenses/rdkit + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/share/licenses/rdkit + cp -pr license.txt /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/share/licenses/rdkit + RPM_EC=0 ++ jobs -p + exit 0 Provides: libRDKitAbbreviations.so.1()(64bit) libRDKitAlignment.so.1()(64bit) libRDKitCIPLabeler.so.1()(64bit) libRDKitCatalogs.so.1()(64bit) libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitChemicalFeatures.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDeprotect.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitDistGeomHelpers.so.1()(64bit) libRDKitDistGeometry.so.1()(64bit) libRDKitEigenSolvers.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFilterCatalog.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitForceField.so.1()(64bit) libRDKitForceFieldHelpers.so.1()(64bit) libRDKitFragCatalog.so.1()(64bit) libRDKitGenericGroups.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitInfoTheory.so.1()(64bit) libRDKitMMPA.so.1()(64bit) libRDKitMolAlign.so.1()(64bit) libRDKitMolCatalog.so.1()(64bit) libRDKitMolChemicalFeatures.so.1()(64bit) libRDKitMolDraw2D.so.1()(64bit) libRDKitMolEnumerator.so.1()(64bit) libRDKitMolHash.so.1()(64bit) libRDKitMolStandardize.so.1()(64bit) libRDKitMolTransforms.so.1()(64bit) libRDKitO3AAlign.so.1()(64bit) libRDKitOptimizer.so.1()(64bit) libRDKitPartialCharges.so.1()(64bit) libRDKitRDBoost.so.1()(64bit) libRDKitRDGeneral.so.1()(64bit) libRDKitRDGeometryLib.so.1()(64bit) libRDKitRDInchiLib.so.1()(64bit) libRDKitRDStreams.so.1()(64bit) libRDKitRGroupDecomposition.so.1()(64bit) libRDKitReducedGraphs.so.1()(64bit) libRDKitSLNParse.so.1()(64bit) libRDKitScaffoldNetwork.so.1()(64bit) libRDKitShapeHelpers.so.1()(64bit) libRDKitSimDivPickers.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitSubgraphs.so.1()(64bit) libRDKitSubstructLibrary.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libRDKitTautomerQuery.so.1()(64bit) libRDKitTrajectory.so.1()(64bit) libRDKitga.so.1()(64bit) libRDKithc.so.1()(64bit) librdkitCatch.so()(64bit) rdkit = 2023.03.2-1.fc38 rdkit(x86-64) = 2023.03.2-1.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-x86-64.so.2()(64bit) ld-linux-x86-64.so.2(GLIBC_2.3)(64bit) libRDKitAlignment.so.1()(64bit) libRDKitCatalogs.so.1()(64bit) libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitDistGeometry.so.1()(64bit) libRDKitEigenSolvers.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFilterCatalog.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitForceField.so.1()(64bit) libRDKitForceFieldHelpers.so.1()(64bit) libRDKitGenericGroups.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitMolAlign.so.1()(64bit) libRDKitMolStandardize.so.1()(64bit) libRDKitMolTransforms.so.1()(64bit) libRDKitPartialCharges.so.1()(64bit) libRDKitRDGeneral.so.1()(64bit) libRDKitRDGeometryLib.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitSubgraphs.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libRDKitTautomerQuery.so.1()(64bit) libRDKitga.so.1()(64bit) libRDKithc.so.1()(64bit) libboost_iostreams.so.1.78.0()(64bit) libboost_python311.so.1.78.0()(64bit) libboost_serialization.so.1.78.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libcairo.so.2()(64bit) libfreetype.so.6()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgcc_s.so.1(GCC_3.4)(64bit) libinchi.so.1()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libmaeparser.so.1()(64bit) libpython3.11.so.1.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.11)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.7)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.17)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.5)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Processing files: rdkit-devel-2023.03.2-1.fc38.x86_64 Provides: cmake(rdkit) = 2023.03.2 rdkit-devel = 2023.03.2-1.fc38 rdkit-devel(x86-64) = 2023.03.2-1.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: cmake-filesystem(x86-64) libRDKitAbbreviations.so.1()(64bit) libRDKitAlignment.so.1()(64bit) libRDKitCIPLabeler.so.1()(64bit) libRDKitCatalogs.so.1()(64bit) libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitChemicalFeatures.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDeprotect.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitDistGeomHelpers.so.1()(64bit) libRDKitDistGeometry.so.1()(64bit) libRDKitEigenSolvers.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFilterCatalog.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitForceField.so.1()(64bit) libRDKitForceFieldHelpers.so.1()(64bit) libRDKitFragCatalog.so.1()(64bit) libRDKitGenericGroups.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitInfoTheory.so.1()(64bit) libRDKitMMPA.so.1()(64bit) libRDKitMolAlign.so.1()(64bit) libRDKitMolCatalog.so.1()(64bit) libRDKitMolChemicalFeatures.so.1()(64bit) libRDKitMolDraw2D.so.1()(64bit) libRDKitMolEnumerator.so.1()(64bit) libRDKitMolHash.so.1()(64bit) libRDKitMolStandardize.so.1()(64bit) libRDKitMolTransforms.so.1()(64bit) libRDKitO3AAlign.so.1()(64bit) libRDKitOptimizer.so.1()(64bit) libRDKitPartialCharges.so.1()(64bit) libRDKitRDBoost.so.1()(64bit) libRDKitRDGeneral.so.1()(64bit) libRDKitRDGeometryLib.so.1()(64bit) libRDKitRDInchiLib.so.1()(64bit) libRDKitRDStreams.so.1()(64bit) libRDKitRGroupDecomposition.so.1()(64bit) libRDKitReducedGraphs.so.1()(64bit) libRDKitSLNParse.so.1()(64bit) libRDKitScaffoldNetwork.so.1()(64bit) libRDKitShapeHelpers.so.1()(64bit) libRDKitSimDivPickers.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitSubgraphs.so.1()(64bit) libRDKitSubstructLibrary.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libRDKitTautomerQuery.so.1()(64bit) libRDKitTrajectory.so.1()(64bit) libRDKitga.so.1()(64bit) libRDKithc.so.1()(64bit) librdkitCatch.so()(64bit) Processing files: rdkit-doc-2023.03.2-1.fc38.noarch Processing files: python3-rdkit-2023.03.2-1.fc38.x86_64 Provides: python-rdkit = 2023.03.2-1.fc38 python3-rdkit = 2023.03.2-1.fc38 python3-rdkit(x86-64) = 2023.03.2-1.fc38 python3.11-rdkit = 2023.03.2-1.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-x86-64.so.2()(64bit) ld-linux-x86-64.so.2(GLIBC_2.3)(64bit) libRDKitAbbreviations.so.1()(64bit) libRDKitAlignment.so.1()(64bit) libRDKitCIPLabeler.so.1()(64bit) libRDKitCatalogs.so.1()(64bit) libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitChemicalFeatures.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDeprotect.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitDistGeomHelpers.so.1()(64bit) libRDKitDistGeometry.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFilterCatalog.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitForceField.so.1()(64bit) libRDKitForceFieldHelpers.so.1()(64bit) libRDKitFragCatalog.so.1()(64bit) libRDKitGenericGroups.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitInfoTheory.so.1()(64bit) libRDKitMMPA.so.1()(64bit) libRDKitMolAlign.so.1()(64bit) libRDKitMolCatalog.so.1()(64bit) libRDKitMolChemicalFeatures.so.1()(64bit) libRDKitMolDraw2D.so.1()(64bit) libRDKitMolEnumerator.so.1()(64bit) libRDKitMolHash.so.1()(64bit) libRDKitMolStandardize.so.1()(64bit) libRDKitMolTransforms.so.1()(64bit) libRDKitO3AAlign.so.1()(64bit) libRDKitPartialCharges.so.1()(64bit) libRDKitRDBoost.so.1()(64bit) libRDKitRDGeneral.so.1()(64bit) libRDKitRDGeometryLib.so.1()(64bit) libRDKitRDInchiLib.so.1()(64bit) libRDKitRGroupDecomposition.so.1()(64bit) libRDKitReducedGraphs.so.1()(64bit) libRDKitSLNParse.so.1()(64bit) libRDKitScaffoldNetwork.so.1()(64bit) libRDKitShapeHelpers.so.1()(64bit) libRDKitSimDivPickers.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitSubgraphs.so.1()(64bit) libRDKitSubstructLibrary.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libRDKitTautomerQuery.so.1()(64bit) libRDKitTrajectory.so.1()(64bit) libRDKithc.so.1()(64bit) libboost_python311.so.1.78.0()(64bit) libboost_serialization.so.1.78.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libcairo.so.2()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libpython3.11.so.1.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.7)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.17)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) python(abi) = 3.11 rtld(GNU_HASH) Processing files: rdkit-postgresql-2023.03.2-1.fc38.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.RU4NfG + umask 022 + cd /builddir/build/BUILD + cd rdkit-Release_2023_03_2 + DOCDIR=/builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/share/doc/rdkit-postgresql + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/share/doc/rdkit-postgresql + cp -pr Code/PgSQL/rdkit/README_PgSQL.md /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/share/doc/rdkit-postgresql + RPM_EC=0 ++ jobs -p + exit 0 Provides: librdkit.so()(64bit) rdkit-postgresql = 2023.03.2-1.fc38 rdkit-postgresql(x86-64) = 2023.03.2-1.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitGenericGroups.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitMolDraw2D.so.1()(64bit) libRDKitMolHash.so.1()(64bit) libRDKitRDInchiLib.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) rtld(GNU_HASH) Processing files: rdkit-debugsource-2023.03.2-1.fc38.x86_64 Provides: rdkit-debugsource = 2023.03.2-1.fc38 rdkit-debugsource(x86-64) = 2023.03.2-1.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: rdkit-debuginfo-2023.03.2-1.fc38.x86_64 Provides: debuginfo(build-id) = 0693345c435d09ba68771b4f2bba89b8598521ea debuginfo(build-id) = 07de25379fe4e3d8f7456b9c178b667ee80ca4a5 debuginfo(build-id) = 09f79eb4f307d8e05fb68f7f2c79522c6873da35 debuginfo(build-id) = 0b59deadfd7cee19a69a8c1c3cb99368bd81d539 debuginfo(build-id) = 0c547f95e3b39322af38c1de9e0796ef0332d116 debuginfo(build-id) = 15bdf620028b9df0f2c10e1a15282dedac81dae7 debuginfo(build-id) = 175a9953bd5111aa46977bad889b751a44d96ed1 debuginfo(build-id) = 2249749a180081af20fb0f1db31fa38009d744c9 debuginfo(build-id) = 23fd7d70cfd9b38fabae2082dcee0c6eeedb5b58 debuginfo(build-id) = 3b8bdc5f74e3247b3aaab970c425df8691ca7732 debuginfo(build-id) = 3d9841591c572771cca1d3c1972703864e91046e debuginfo(build-id) = 44569bcc6c90f87f9e9d4acbd1cb325b8a6f8605 debuginfo(build-id) = 4ce960a2eb28ba4991738ff97528977a61c2e816 debuginfo(build-id) = 4d0ebcb7a505569b0c0ce3b45b60e052b0e47021 debuginfo(build-id) = 4d4976d8fe60f0ef379c6a14584aca2f4b661475 debuginfo(build-id) = 54a9887eb89ef28d623e4fb67622e7c2ee386267 debuginfo(build-id) = 551e5d0276452f191c49ab18ac71e278ce0ced6b debuginfo(build-id) = 552aa883013ed42ea6b7296faad1e5b3ebfa6035 debuginfo(build-id) = 58a42cfdb9e166fac60a31097d0ebc158fea0df3 debuginfo(build-id) = 5ec762cefd1af2806842c24701dd0771eee761dc debuginfo(build-id) = 5f2f53dcd79c4c38ee0c1eba0693ca20e7d80f15 debuginfo(build-id) = 6c5025e2498c2485e07e08ff204f8fb09d7fc701 debuginfo(build-id) = 6de85e0f978053bac45f1fef8edc4a72d9320a98 debuginfo(build-id) = 722646871fb071b58483252412ecbaf0fd8217ee debuginfo(build-id) = 74f26d3ffa3484112b9739b309f6e8a2849b324b debuginfo(build-id) = 76952198815488348c3a343307d208b41fd295cf debuginfo(build-id) = 8344b148985275eb0f5c4c179b1a5a94d57c6856 debuginfo(build-id) = 85705295f31305820ca7f0aed5726366132b4257 debuginfo(build-id) = 85c770a8ea06c63d614314315153833a2b74db6c debuginfo(build-id) = 8656bc6e98ed8abf9a4dcece12748342248b726d debuginfo(build-id) = 8f2856d0f70d58b2d1b7550381eb3f1caf02e541 debuginfo(build-id) = 9348061d525d420aa0423d50ce14618789c802af debuginfo(build-id) = 9b3ba1d25a6600c559889233362121cd1917f175 debuginfo(build-id) = 9fb0513272a8d07df5a30cd64b009f8a3b35a5ac debuginfo(build-id) = aa1bc84f34c260a33af429c174857468eb4478d3 debuginfo(build-id) = b23d146281f564186e4136aa246d8c873217dc2d debuginfo(build-id) = b2545aba6b0ad1ca49e7410b9fd4d2b7db34c739 debuginfo(build-id) = b39ccb0003118bfed1ccbc944a7abfa2fa58cdf4 debuginfo(build-id) = b5e36fac255da896fcc992b6863764a759c46f3a debuginfo(build-id) = b9a5146f5acf22d9eb8b548c79d3a03b40435776 debuginfo(build-id) = b9f38d7931aeb0776daad0d6389191c1ab5b72d4 debuginfo(build-id) = bbba139ad62cd7e72b208ea76b2c96679d1776c0 debuginfo(build-id) = bca021c18c4f068039e5e7d985bc269eeae45334 debuginfo(build-id) = c1bc8aa43dfd9c7d232ac4aeaff569faf907b1cb debuginfo(build-id) = c5e129efbd938c2d434c0d9759130b323348591a debuginfo(build-id) = caa434fe05e391c9c4686457be914b1ae58a15e7 debuginfo(build-id) = d0e914e7cea3f3bf0d7881834ab4948670c66492 debuginfo(build-id) = d7b252205fa9cf1c76356b66442c587b54ddee9b debuginfo(build-id) = e1bba981ec183ca9f8176ea0463b3c0de7face2b debuginfo(build-id) = e5af84b62d2167c9ff3556cc3679ef0fdae48e80 debuginfo(build-id) = ea62527c13fa8c956f646c33e0550b0b28314fd3 debuginfo(build-id) = eb9c06a1a2b78fa90ceac0771ebb434dbfaad23f debuginfo(build-id) = ec6b16812a406f989f3f6e548ebfc2839172485d debuginfo(build-id) = f0ffe7e39d8faefdfebad66adb004766fc96bb1a debuginfo(build-id) = f3f510b9359186cef974836f7b3a0485a5277d48 debuginfo(build-id) = f7c95aa2ae99c4babaf3a08e360fca69f5e7f9a3 libRDKitAbbreviations.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitAlignment.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitCIPLabeler.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitCatalogs.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitChemReactions.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitChemTransforms.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitChemicalFeatures.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitDataStructs.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitDepictor.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitDeprotect.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitDescriptors.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitDistGeomHelpers.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitDistGeometry.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitEigenSolvers.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitFMCS.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitFileParsers.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitFilterCatalog.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitFingerprints.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitForceField.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitForceFieldHelpers.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitFragCatalog.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitGenericGroups.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitGraphMol.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitInfoTheory.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitMMPA.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitMolAlign.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitMolCatalog.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitMolChemicalFeatures.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitMolDraw2D.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitMolEnumerator.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitMolHash.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitMolStandardize.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitMolTransforms.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitO3AAlign.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitOptimizer.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitPartialCharges.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitRDBoost.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitRDGeneral.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitRDGeometryLib.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitRDInchiLib.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitRDStreams.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitRGroupDecomposition.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitReducedGraphs.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitSLNParse.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitScaffoldNetwork.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitShapeHelpers.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitSimDivPickers.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitSmilesParse.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitSubgraphs.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitSubstructLibrary.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitSubstructMatch.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitTautomerQuery.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitTrajectory.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitga.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKithc.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) librdkitCatch.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) rdkit-debuginfo = 2023.03.2-1.fc38 rdkit-debuginfo(x86-64) = 2023.03.2-1.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: rdkit-debugsource(x86-64) = 2023.03.2-1.fc38 Processing files: python3-rdkit-debuginfo-2023.03.2-1.fc38.x86_64 Provides: debuginfo(build-id) = 00937cca6a61a4c5f000291346ca26e9d67c55a0 debuginfo(build-id) = 03a756dea22fa8791e0800352981b5db4e6702e6 debuginfo(build-id) = 0428f3634ee8e218460d7004df5a99e816c0ee4a debuginfo(build-id) = 08d4f87492cfa30d0a70a1b55286d65aa709a15b debuginfo(build-id) = 157659d3b0788b1136c629ec97512499df0d699d debuginfo(build-id) = 167ad59f2eebbe98852748f13a84d39353f391d9 debuginfo(build-id) = 198be48d153edae3f7b032f80046c6509fdf73cf debuginfo(build-id) = 21d6c4a7eb61cafe4a02935f45a959e69cb04cdf debuginfo(build-id) = 24a8294b45ecd9c357f8f091e92b574205f126cd debuginfo(build-id) = 258ed4816f333e434e4939e25f2d3109aec060de debuginfo(build-id) = 28aae3c7393e70a38907fa5218fd9d537223e621 debuginfo(build-id) = 2e8232728e4f468fb6feb7a618e7f0a21cf496b8 debuginfo(build-id) = 3460f36682984145a8b19752c1caa1264eda28e9 debuginfo(build-id) = 3c77f124fa500c881302ec37be29471cef06fda3 debuginfo(build-id) = 3f5bfe2566d1ae65e88fced19b861bb3f041d206 debuginfo(build-id) = 4519966ae1cf8392f92c5d699bafb004eeb1286a debuginfo(build-id) = 58f23747129a4661cb6b7a77186da6aa353cb43a debuginfo(build-id) = 61ac071efddcccf526bfd910bb661da49c3ed745 debuginfo(build-id) = 6914f00cdd5d645db9cc99c02b637a194be7c261 debuginfo(build-id) = 71ad4685dea4c6dd509ae93f21e955beaf1092aa debuginfo(build-id) = 71febf8a57e5c6d4850ffbb30b07c28937335a4a debuginfo(build-id) = 733543e9c84334cac471bd2e8d88bae7b73f842a debuginfo(build-id) = 7ef23fbe578bcdd12f0db10b907a3b240a9a7f07 debuginfo(build-id) = 7ef370a47ad5cb47ac72fc5a06ca4f2004213db0 debuginfo(build-id) = 7fdbc1be6b19ab5c41c7a95a6d72c4672488b48b debuginfo(build-id) = 81ab7f00742694a957ad2460aff2556e19081d93 debuginfo(build-id) = 88a6a1589464e1dc302039a0bef961c3192d5faf debuginfo(build-id) = 8ef323b0e92b15046663328d8fda8794b84f63c2 debuginfo(build-id) = 8f327d970f5eb0a8109f492b8b2801df7dbb6a97 debuginfo(build-id) = 980ef19e5ed122ca43f71f49568bd263770ec4ac debuginfo(build-id) = 99ae019037d9b957fcb7b59f3acd162987b2c69a debuginfo(build-id) = 9fa1517b38aaa2a77d88ce2262f6d12eab30af01 debuginfo(build-id) = a4d0ac01c6ee2bc5a8a202534a67b1e156bb6936 debuginfo(build-id) = a4ff18357521bf2e0964720fc2d009ef55e2ba7f debuginfo(build-id) = a5888c1d80fa16ae996e509114c239fa87236ee1 debuginfo(build-id) = a716f8f6388c05884b1b721061e7d7b214af77f8 debuginfo(build-id) = aeae32129fac30ecc425e44849f91cde2853fe4d debuginfo(build-id) = b8276fba59e10953c1b5b5b4c8ac994ddb6b73ce debuginfo(build-id) = bd3e036acfa5cc4232114b09ec69b171cc729698 debuginfo(build-id) = befd71fdc4ef4bde8cc343e31ac5f499808478a6 debuginfo(build-id) = c1c8c9ec50b51a7a11989f4b99ad2f0303817339 debuginfo(build-id) = c46d128b07e01f2d8975f908932c937ffb882526 debuginfo(build-id) = c7e21db87c0773afaffb31c2606942fa9ca0e36d debuginfo(build-id) = ce2ebaa12328a4989990cefbd54c9b7feec13f17 debuginfo(build-id) = d354b5f1fe14a17a42d687aee15aba7dd054572e debuginfo(build-id) = e45805ffd512f33e0eafaf602d23eb02ab12da3a debuginfo(build-id) = f8ced66551d9e50d502bc087a372db34ac316886 debuginfo(build-id) = fc14a4985bea32e86fff28b6955f27c591bc3b40 python-rdkit-debuginfo = 2023.03.2-1.fc38 python3-rdkit-debuginfo = 2023.03.2-1.fc38 python3-rdkit-debuginfo(x86-64) = 2023.03.2-1.fc38 python3.11-rdkit-debuginfo = 2023.03.2-1.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: rdkit-debugsource(x86-64) = 2023.03.2-1.fc38 Processing files: rdkit-postgresql-debuginfo-2023.03.2-1.fc38.x86_64 Provides: debuginfo(build-id) = eae9b6a5d051301cb5ed5e6d9d54bc86ca43b4d2 rdkit-postgresql-debuginfo = 2023.03.2-1.fc38 rdkit-postgresql-debuginfo(x86-64) = 2023.03.2-1.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: rdkit-debugsource(x86-64) = 2023.03.2-1.fc38 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64 Wrote: /builddir/build/RPMS/rdkit-debuginfo-2023.03.2-1.fc38.x86_64.rpm Wrote: /builddir/build/RPMS/python3-rdkit-2023.03.2-1.fc38.x86_64.rpm Wrote: /builddir/build/RPMS/rdkit-2023.03.2-1.fc38.x86_64.rpm Wrote: /builddir/build/RPMS/python3-rdkit-debuginfo-2023.03.2-1.fc38.x86_64.rpm Wrote: /builddir/build/RPMS/rdkit-postgresql-debuginfo-2023.03.2-1.fc38.x86_64.rpm Wrote: /builddir/build/RPMS/rdkit-devel-2023.03.2-1.fc38.x86_64.rpm Wrote: /builddir/build/RPMS/rdkit-postgresql-2023.03.2-1.fc38.x86_64.rpm Wrote: /builddir/build/RPMS/rdkit-doc-2023.03.2-1.fc38.noarch.rpm Wrote: /builddir/build/RPMS/rdkit-debugsource-2023.03.2-1.fc38.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.wvqc3O + umask 022 + cd /builddir/build/BUILD + cd rdkit-Release_2023_03_2 + /usr/bin/rm -rf /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.xGLf6g + umask 022 + cd /builddir/build/BUILD + rm -rf rdkit-Release_2023_03_2 rdkit-Release_2023_03_2.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Child return code was: 0