Warning: Permanently added '44.200.28.133' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6144287-fedora-38-x86_64 --chroot fedora-38-x86_64 Version: 0.68 PID: 5548 Logging PID: 5549 Task: {'appstream': False, 'background': False, 'build_id': 6144287, 'buildroot_pkgs': [], 'chroot': 'fedora-38-x86_64', 'enable_net': False, 'fedora_review': True, 'git_hash': 'b6a188bda17a6640a46690347422cda5de0f7058', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/@fedora-review/fedora-review-2081113-rdkit/rdkit', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'rdkit', 'package_version': '2023.03.2-1.fc39', 'project_dirname': 'fedora-review-2081113-rdkit', 'project_name': 'fedora-review-2081113-rdkit', 'project_owner': '@fedora-review', 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/@fedora-review/fedora-review-2081113-rdkit/fedora-38-x86_64/', 'id': 'copr_base', 'name': 'Copr repository'}], 'sandbox': '@fedora-review/fedora-review-2081113-rdkit--frostyx', 'source_json': {}, 'source_type': None, 'submitter': 'frostyx', 'tags': [], 'task_id': '6144287-fedora-38-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/@fedora-review/fedora-review-2081113-rdkit/rdkit /var/lib/copr-rpmbuild/workspace/workdir-_52kech9/rdkit --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/@fedora-review/fedora-review-2081113-rdkit/rdkit', '/var/lib/copr-rpmbuild/workspace/workdir-_52kech9/rdkit', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-_52kech9/rdkit'... Running: git checkout b6a188bda17a6640a46690347422cda5de0f7058 -- cmd: ['git', 'checkout', 'b6a188bda17a6640a46690347422cda5de0f7058', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-_52kech9/rdkit rc: 0 stdout: stderr: Note: switching to 'b6a188bda17a6640a46690347422cda5de0f7058'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at b6a188b automatic import of rdkit Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-_52kech9/rdkit rc: 0 stdout: /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading rdkit-Release_2023_03_2.tar.gz INFO: Calling: curl -H Pragma: -o rdkit-Release_2023_03_2.tar.gz --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/@fedora-review/fedora-review-2081113-rdkit/rdkit/rdkit-Release_2023_03_2.tar.gz/md5/697b407c8a65535ae25a238e7cfcc5f0/rdkit-Release_2023_03_2.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 75.7M 100 75.7M 0 0 247M 0 --:--:-- --:--:-- --:--:-- 247M INFO: Reading stdout from command: md5sum rdkit-Release_2023_03_2.tar.gz Running (timeout=18000): unbuffer mock --buildsrpm --spec /var/lib/copr-rpmbuild/workspace/workdir-_52kech9/rdkit/rdkit.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-_52kech9/rdkit --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1688587310.077043 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 4.1 starting (python version = 3.11.3, NVR = mock-4.1-1.fc38)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-_52kech9/rdkit/rdkit.spec) Config(fedora-38-x86_64) Start: clean chroot Finish: clean chroot Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-38-x86_64-bootstrap-1688587310.077043/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 4.1 INFO: Mock Version: 4.1 INFO: Package manager dnf detected and used (fallback) Start(bootstrap): installing dnf tooling No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 3.2 kB/s | 257 B 00:00 fedora 39 MB/s | 83 MB 00:02 updates 13 MB/s | 25 MB 00:01 Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing: dnf-plugins-core noarch 4.4.1-1.fc38 updates 38 k python3-dnf noarch 4.16.1-1.fc38 updates 604 k Installing dependencies: alternatives x86_64 1.24-1.fc38 updates 39 k audit-libs x86_64 3.1.1-1.fc38 updates 116 k basesystem noarch 11-15.fc38 fedora 7.0 k bash x86_64 5.2.15-3.fc38 fedora 1.8 M bzip2-libs x86_64 1.0.8-13.fc38 fedora 41 k ca-certificates noarch 2023.2.60-2.fc38 fedora 845 k coreutils x86_64 9.1-12.fc38 updates 1.1 M coreutils-common x86_64 9.1-12.fc38 updates 2.0 M crypto-policies noarch 20230301-1.gita12f7b2.fc38 fedora 93 k curl x86_64 8.0.1-2.fc38 updates 349 k cyrus-sasl-lib x86_64 2.1.28-9.fc38 fedora 794 k dbus-libs x86_64 1:1.14.8-1.fc38 updates 156 k dnf-data noarch 4.16.1-1.fc38 updates 38 k elfutils-default-yama-scope noarch 0.189-2.fc38 updates 15 k elfutils-libelf x86_64 0.189-2.fc38 updates 196 k elfutils-libs x86_64 0.189-2.fc38 updates 260 k expat x86_64 2.5.0-2.fc38 fedora 110 k fedora-gpg-keys noarch 38-1 fedora 126 k fedora-release noarch 38-36 updates 12 k fedora-release-common noarch 38-36 updates 22 k fedora-release-identity-basic noarch 38-36 updates 13 k fedora-repos noarch 38-1 fedora 9.1 k file-libs x86_64 5.44-3.fc38 fedora 730 k filesystem x86_64 3.18-3.fc38 fedora 1.1 M findutils x86_64 1:4.9.0-3.fc38 fedora 492 k gawk x86_64 5.1.1-5.fc38 fedora 1.0 M gdbm-libs x86_64 1:1.23-3.fc38 fedora 56 k glib2 x86_64 2.76.3-1.fc38 updates 2.8 M glibc x86_64 2.37-4.fc38 updates 2.1 M glibc-common x86_64 2.37-4.fc38 updates 314 k glibc-minimal-langpack x86_64 2.37-4.fc38 updates 37 k gmp x86_64 1:6.2.1-4.fc38 fedora 313 k gnupg2 x86_64 2.4.0-3.fc38 fedora 2.6 M gnutls x86_64 3.8.0-2.fc38 fedora 1.1 M gpgme x86_64 1.17.1-3.fc38 fedora 210 k grep x86_64 3.8-3.fc38 fedora 293 k ima-evm-utils x86_64 1.4-7.fc38 fedora 62 k json-c x86_64 0.16-4.fc38 fedora 41 k keyutils-libs x86_64 1.6.1-6.fc38 fedora 31 k krb5-libs x86_64 1.20.1-8.fc38 fedora 727 k libacl x86_64 2.3.1-6.fc38 fedora 23 k libarchive x86_64 3.6.1-4.fc38 fedora 400 k libassuan x86_64 2.5.6-1.fc38 updates 67 k libattr x86_64 2.5.1-6.fc38 fedora 18 k libb2 x86_64 0.98.1-8.fc38 fedora 25 k libblkid x86_64 2.38.1-4.fc38 fedora 106 k libbrotli x86_64 1.0.9-11.fc38 fedora 317 k libcap x86_64 2.48-6.fc38 fedora 67 k libcap-ng x86_64 0.8.3-5.fc38 fedora 32 k libcom_err x86_64 1.46.5-4.fc38 fedora 26 k libcomps x86_64 0.1.18-6.fc38 fedora 77 k libcurl x86_64 8.0.1-2.fc38 updates 312 k libdnf x86_64 0.70.1-1.fc38 updates 669 k libeconf x86_64 0.4.0-5.fc38 fedora 27 k libevent x86_64 2.1.12-8.fc38 fedora 257 k libffi x86_64 3.4.4-2.fc38 fedora 38 k libfsverity x86_64 1.4-9.fc38 fedora 19 k libgcc x86_64 13.1.1-4.fc38 updates 107 k libgcrypt x86_64 1.10.2-1.fc38 updates 514 k libgomp x86_64 13.1.1-4.fc38 updates 317 k libgpg-error x86_64 1.47-1.fc38 updates 230 k libidn2 x86_64 2.3.4-2.fc38 fedora 160 k libksba x86_64 1.6.4-1.fc38 updates 158 k libmodulemd x86_64 2.15.0-2.fc38 updates 231 k libmount x86_64 2.38.1-4.fc38 fedora 135 k libnghttp2 x86_64 1.52.0-1.fc38 fedora 75 k libnsl2 x86_64 2.0.0-5.fc38 fedora 30 k libpsl x86_64 0.21.2-2.fc38 fedora 65 k librepo x86_64 1.15.1-2.fc38 fedora 96 k libreport-filesystem noarch 2.17.11-1.fc38 updates 14 k libselinux x86_64 3.5-1.fc38 fedora 87 k libsemanage x86_64 3.5-2.fc38 fedora 120 k libsepol x86_64 3.5-1.fc38 fedora 324 k libsigsegv x86_64 2.14-4.fc38 fedora 27 k libsmartcols x86_64 2.38.1-4.fc38 fedora 64 k libsolv x86_64 0.7.22-4.fc38 fedora 412 k libssh x86_64 0.10.5-1.fc38 updates 211 k libssh-config noarch 0.10.5-1.fc38 updates 9.0 k libstdc++ x86_64 13.1.1-4.fc38 updates 861 k libtasn1 x86_64 4.19.0-2.fc38 fedora 74 k libtirpc x86_64 1.3.3-1.rc1.fc38 updates 93 k libunistring x86_64 1.1-3.fc38 fedora 545 k libunistring1.0 x86_64 1.0-1.fc38 fedora 539 k libuuid x86_64 2.38.1-4.fc38 fedora 28 k libverto x86_64 0.3.2-5.fc38 fedora 21 k libxcrypt x86_64 4.4.35-1.fc38 updates 119 k libxml2 x86_64 2.10.4-1.fc38 updates 701 k libyaml x86_64 0.2.5-9.fc38 fedora 59 k libzstd x86_64 1.5.5-1.fc38 updates 308 k lua-libs x86_64 5.4.4-9.fc38 fedora 133 k lz4-libs x86_64 1.9.4-2.fc38 fedora 67 k mpdecimal x86_64 2.5.1-6.fc38 fedora 89 k mpfr x86_64 4.1.1-3.fc38 fedora 600 k ncurses-base noarch 6.4-3.20230114.fc38 fedora 87 k ncurses-libs x86_64 6.4-3.20230114.fc38 fedora 333 k nettle x86_64 3.8-3.fc38 fedora 412 k npth x86_64 1.6-12.fc38 fedora 24 k openldap x86_64 2.6.4-1.fc38 fedora 254 k openssl-libs x86_64 1:3.0.9-1.fc38 updates 2.1 M p11-kit x86_64 0.24.1-6.fc38 fedora 359 k p11-kit-trust x86_64 0.24.1-6.fc38 fedora 136 k pcre2 x86_64 10.42-1.fc38.1 fedora 234 k pcre2-syntax noarch 10.42-1.fc38.1 fedora 144 k popt x86_64 1.19-2.fc38 fedora 67 k publicsuffix-list-dafsa noarch 20230614-1.fc38 updates 57 k python-pip-wheel noarch 22.3.1-2.fc38 fedora 1.4 M python-setuptools-wheel noarch 65.5.1-2.fc38 fedora 715 k python3 x86_64 3.11.4-1.fc38 updates 28 k python3-dateutil noarch 1:2.8.2-5.fc38 fedora 360 k python3-dbus x86_64 1.3.2-2.fc38 fedora 157 k python3-distro noarch 1.8.0-2.fc38 fedora 49 k python3-dnf-plugins-core noarch 4.4.1-1.fc38 updates 299 k python3-gpg x86_64 1.17.1-3.fc38 fedora 296 k python3-hawkey x86_64 0.70.1-1.fc38 updates 107 k python3-libcomps x86_64 0.1.18-6.fc38 fedora 47 k python3-libdnf x86_64 0.70.1-1.fc38 updates 826 k python3-libs x86_64 3.11.4-1.fc38 updates 9.6 M python3-rpm x86_64 4.18.1-3.fc38 updates 72 k python3-six noarch 1.16.0-9.fc38 fedora 42 k python3-systemd x86_64 235-2.fc38 fedora 108 k readline x86_64 8.2-3.fc38 fedora 212 k rpm x86_64 4.18.1-3.fc38 updates 570 k rpm-build-libs x86_64 4.18.1-3.fc38 updates 94 k rpm-libs x86_64 4.18.1-3.fc38 updates 313 k rpm-sequoia x86_64 1.4.1-1.fc38 updates 842 k rpm-sign-libs x86_64 4.18.1-3.fc38 updates 26 k sed x86_64 4.8-12.fc38 fedora 306 k setup noarch 2.14.3-2.fc38 fedora 152 k shadow-utils x86_64 2:4.13-6.fc38 fedora 1.3 M sqlite-libs x86_64 3.40.1-2.fc38 fedora 666 k systemd-libs x86_64 253.5-1.fc38 updates 652 k tpm2-tss x86_64 4.0.1-3.fc38 fedora 675 k tzdata noarch 2023c-1.fc38 fedora 718 k xz-libs x86_64 5.4.1-1.fc38 fedora 108 k zchunk-libs x86_64 1.3.1-1.fc38 updates 52 k zlib x86_64 1.2.13-3.fc38 fedora 95 k Transaction Summary ================================================================================ Install 138 Packages Total download size: 57 M Installed size: 200 M Downloading Packages: (1/138): basesystem-11-15.fc38.noarch.rpm 75 kB/s | 7.0 kB 00:00 (2/138): bzip2-libs-1.0.8-13.fc38.x86_64.rpm 280 kB/s | 41 kB 00:00 (3/138): crypto-policies-20230301-1.gita12f7b2. 847 kB/s | 93 kB 00:00 (4/138): ca-certificates-2023.2.60-2.fc38.noarc 2.1 MB/s | 845 kB 00:00 (5/138): expat-2.5.0-2.fc38.x86_64.rpm 3.8 MB/s | 110 kB 00:00 (6/138): bash-5.2.15-3.fc38.x86_64.rpm 3.4 MB/s | 1.8 MB 00:00 (7/138): fedora-gpg-keys-38-1.noarch.rpm 4.3 MB/s | 126 kB 00:00 (8/138): fedora-repos-38-1.noarch.rpm 328 kB/s | 9.1 kB 00:00 (9/138): cyrus-sasl-lib-2.1.28-9.fc38.x86_64.rp 2.0 MB/s | 794 kB 00:00 (10/138): file-libs-5.44-3.fc38.x86_64.rpm 6.4 MB/s | 730 kB 00:00 (11/138): filesystem-3.18-3.fc38.x86_64.rpm 9.7 MB/s | 1.1 MB 00:00 (12/138): gdbm-libs-1.23-3.fc38.x86_64.rpm 2.0 MB/s | 56 kB 00:00 (13/138): gmp-6.2.1-4.fc38.x86_64.rpm 10 MB/s | 313 kB 00:00 (14/138): findutils-4.9.0-3.fc38.x86_64.rpm 4.3 MB/s | 492 kB 00:00 (15/138): gawk-5.1.1-5.fc38.x86_64.rpm 8.9 MB/s | 1.0 MB 00:00 (16/138): gpgme-1.17.1-3.fc38.x86_64.rpm 7.2 MB/s | 210 kB 00:00 (17/138): grep-3.8-3.fc38.x86_64.rpm 10 MB/s | 293 kB 00:00 (18/138): ima-evm-utils-1.4-7.fc38.x86_64.rpm 2.1 MB/s | 62 kB 00:00 (19/138): json-c-0.16-4.fc38.x86_64.rpm 1.4 MB/s | 41 kB 00:00 (20/138): gnupg2-2.4.0-3.fc38.x86_64.rpm 15 MB/s | 2.6 MB 00:00 (21/138): keyutils-libs-1.6.1-6.fc38.x86_64.rpm 1.1 MB/s | 31 kB 00:00 (22/138): gnutls-3.8.0-2.fc38.x86_64.rpm 6.6 MB/s | 1.1 MB 00:00 (23/138): libacl-2.3.1-6.fc38.x86_64.rpm 818 kB/s | 23 kB 00:00 (24/138): krb5-libs-1.20.1-8.fc38.x86_64.rpm 13 MB/s | 727 kB 00:00 (25/138): libattr-2.5.1-6.fc38.x86_64.rpm 642 kB/s | 18 kB 00:00 (26/138): libarchive-3.6.1-4.fc38.x86_64.rpm 7.0 MB/s | 400 kB 00:00 (27/138): libb2-0.98.1-8.fc38.x86_64.rpm 916 kB/s | 25 kB 00:00 (28/138): libblkid-2.38.1-4.fc38.x86_64.rpm 3.7 MB/s | 106 kB 00:00 (29/138): libcap-2.48-6.fc38.x86_64.rpm 2.3 MB/s | 67 kB 00:00 (30/138): libcap-ng-0.8.3-5.fc38.x86_64.rpm 1.1 MB/s | 32 kB 00:00 (31/138): libbrotli-1.0.9-11.fc38.x86_64.rpm 5.5 MB/s | 317 kB 00:00 (32/138): libcom_err-1.46.5-4.fc38.x86_64.rpm 919 kB/s | 26 kB 00:00 (33/138): libcomps-0.1.18-6.fc38.x86_64.rpm 2.5 MB/s | 77 kB 00:00 (34/138): libeconf-0.4.0-5.fc38.x86_64.rpm 971 kB/s | 27 kB 00:00 (35/138): libevent-2.1.12-8.fc38.x86_64.rpm 8.8 MB/s | 257 kB 00:00 (36/138): libffi-3.4.4-2.fc38.x86_64.rpm 1.3 MB/s | 38 kB 00:00 (37/138): libfsverity-1.4-9.fc38.x86_64.rpm 680 kB/s | 19 kB 00:00 (38/138): libidn2-2.3.4-2.fc38.x86_64.rpm 5.5 MB/s | 160 kB 00:00 (39/138): libmount-2.38.1-4.fc38.x86_64.rpm 4.6 MB/s | 135 kB 00:00 (40/138): libnghttp2-1.52.0-1.fc38.x86_64.rpm 2.6 MB/s | 75 kB 00:00 (41/138): libnsl2-2.0.0-5.fc38.x86_64.rpm 1.0 MB/s | 30 kB 00:00 (42/138): libpsl-0.21.2-2.fc38.x86_64.rpm 2.3 MB/s | 65 kB 00:00 (43/138): librepo-1.15.1-2.fc38.x86_64.rpm 3.2 MB/s | 96 kB 00:00 (44/138): libselinux-3.5-1.fc38.x86_64.rpm 3.0 MB/s | 87 kB 00:00 (45/138): libsemanage-3.5-2.fc38.x86_64.rpm 4.1 MB/s | 120 kB 00:00 (46/138): libsigsegv-2.14-4.fc38.x86_64.rpm 963 kB/s | 27 kB 00:00 (47/138): libsmartcols-2.38.1-4.fc38.x86_64.rpm 2.2 MB/s | 64 kB 00:00 (48/138): libsepol-3.5-1.fc38.x86_64.rpm 5.6 MB/s | 324 kB 00:00 (49/138): libsolv-0.7.22-4.fc38.x86_64.rpm 12 MB/s | 412 kB 00:00 (50/138): libtasn1-4.19.0-2.fc38.x86_64.rpm 2.6 MB/s | 74 kB 00:00 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zchunk-libs-1.3.1-1.fc38.x86_64.rpm 1.4 MB/s | 52 kB 00:00 -------------------------------------------------------------------------------- Total 21 MB/s | 57 MB 00:02 fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0xEB10B464: Userid : "Fedora (38) " Fingerprint: 6A51 BBAB BA3D 5467 B617 1221 809A 8D7C EB10 B464 From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. 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Running scriptlet: rpm-4.18.1-3.fc38.x86_64 138/138 Installing : rpm-4.18.1-3.fc38.x86_64 138/138 Running scriptlet: filesystem-3.18-3.fc38.x86_64 138/138 Running scriptlet: ca-certificates-2023.2.60-2.fc38.noarch 138/138 Running scriptlet: rpm-4.18.1-3.fc38.x86_64 138/138 Verifying : basesystem-11-15.fc38.noarch 1/138 Verifying : bash-5.2.15-3.fc38.x86_64 2/138 Verifying : bzip2-libs-1.0.8-13.fc38.x86_64 3/138 Verifying : ca-certificates-2023.2.60-2.fc38.noarch 4/138 Verifying : crypto-policies-20230301-1.gita12f7b2.fc38.noarc 5/138 Verifying : cyrus-sasl-lib-2.1.28-9.fc38.x86_64 6/138 Verifying : expat-2.5.0-2.fc38.x86_64 7/138 Verifying : fedora-gpg-keys-38-1.noarch 8/138 Verifying : fedora-repos-38-1.noarch 9/138 Verifying : file-libs-5.44-3.fc38.x86_64 10/138 Verifying : filesystem-3.18-3.fc38.x86_64 11/138 Verifying : findutils-1:4.9.0-3.fc38.x86_64 12/138 Verifying : gawk-5.1.1-5.fc38.x86_64 13/138 Verifying : gdbm-libs-1:1.23-3.fc38.x86_64 14/138 Verifying : gmp-1:6.2.1-4.fc38.x86_64 15/138 Verifying : gnupg2-2.4.0-3.fc38.x86_64 16/138 Verifying : gnutls-3.8.0-2.fc38.x86_64 17/138 Verifying : gpgme-1.17.1-3.fc38.x86_64 18/138 Verifying : grep-3.8-3.fc38.x86_64 19/138 Verifying : ima-evm-utils-1.4-7.fc38.x86_64 20/138 Verifying : json-c-0.16-4.fc38.x86_64 21/138 Verifying : keyutils-libs-1.6.1-6.fc38.x86_64 22/138 Verifying : krb5-libs-1.20.1-8.fc38.x86_64 23/138 Verifying : libacl-2.3.1-6.fc38.x86_64 24/138 Verifying : libarchive-3.6.1-4.fc38.x86_64 25/138 Verifying : libattr-2.5.1-6.fc38.x86_64 26/138 Verifying : libb2-0.98.1-8.fc38.x86_64 27/138 Verifying : libblkid-2.38.1-4.fc38.x86_64 28/138 Verifying : libbrotli-1.0.9-11.fc38.x86_64 29/138 Verifying : libcap-2.48-6.fc38.x86_64 30/138 Verifying : libcap-ng-0.8.3-5.fc38.x86_64 31/138 Verifying : libcom_err-1.46.5-4.fc38.x86_64 32/138 Verifying : libcomps-0.1.18-6.fc38.x86_64 33/138 Verifying : libeconf-0.4.0-5.fc38.x86_64 34/138 Verifying : libevent-2.1.12-8.fc38.x86_64 35/138 Verifying : libffi-3.4.4-2.fc38.x86_64 36/138 Verifying : libfsverity-1.4-9.fc38.x86_64 37/138 Verifying : libidn2-2.3.4-2.fc38.x86_64 38/138 Verifying : libmount-2.38.1-4.fc38.x86_64 39/138 Verifying : libnghttp2-1.52.0-1.fc38.x86_64 40/138 Verifying : libnsl2-2.0.0-5.fc38.x86_64 41/138 Verifying : libpsl-0.21.2-2.fc38.x86_64 42/138 Verifying : librepo-1.15.1-2.fc38.x86_64 43/138 Verifying : libselinux-3.5-1.fc38.x86_64 44/138 Verifying : libsemanage-3.5-2.fc38.x86_64 45/138 Verifying : libsepol-3.5-1.fc38.x86_64 46/138 Verifying : libsigsegv-2.14-4.fc38.x86_64 47/138 Verifying : libsmartcols-2.38.1-4.fc38.x86_64 48/138 Verifying : libsolv-0.7.22-4.fc38.x86_64 49/138 Verifying : libtasn1-4.19.0-2.fc38.x86_64 50/138 Verifying : libunistring-1.1-3.fc38.x86_64 51/138 Verifying : libunistring1.0-1.0-1.fc38.x86_64 52/138 Verifying : libuuid-2.38.1-4.fc38.x86_64 53/138 Verifying : libverto-0.3.2-5.fc38.x86_64 54/138 Verifying : libyaml-0.2.5-9.fc38.x86_64 55/138 Verifying : lua-libs-5.4.4-9.fc38.x86_64 56/138 Verifying : lz4-libs-1.9.4-2.fc38.x86_64 57/138 Verifying : mpdecimal-2.5.1-6.fc38.x86_64 58/138 Verifying : mpfr-4.1.1-3.fc38.x86_64 59/138 Verifying : ncurses-base-6.4-3.20230114.fc38.noarch 60/138 Verifying : ncurses-libs-6.4-3.20230114.fc38.x86_64 61/138 Verifying : nettle-3.8-3.fc38.x86_64 62/138 Verifying : npth-1.6-12.fc38.x86_64 63/138 Verifying : openldap-2.6.4-1.fc38.x86_64 64/138 Verifying : p11-kit-0.24.1-6.fc38.x86_64 65/138 Verifying : p11-kit-trust-0.24.1-6.fc38.x86_64 66/138 Verifying : pcre2-10.42-1.fc38.1.x86_64 67/138 Verifying : pcre2-syntax-10.42-1.fc38.1.noarch 68/138 Verifying : popt-1.19-2.fc38.x86_64 69/138 Verifying : python-pip-wheel-22.3.1-2.fc38.noarch 70/138 Verifying : python-setuptools-wheel-65.5.1-2.fc38.noarch 71/138 Verifying : python3-dateutil-1:2.8.2-5.fc38.noarch 72/138 Verifying : python3-dbus-1.3.2-2.fc38.x86_64 73/138 Verifying : python3-distro-1.8.0-2.fc38.noarch 74/138 Verifying : python3-gpg-1.17.1-3.fc38.x86_64 75/138 Verifying : python3-libcomps-0.1.18-6.fc38.x86_64 76/138 Verifying : python3-six-1.16.0-9.fc38.noarch 77/138 Verifying : python3-systemd-235-2.fc38.x86_64 78/138 Verifying : readline-8.2-3.fc38.x86_64 79/138 Verifying : sed-4.8-12.fc38.x86_64 80/138 Verifying : setup-2.14.3-2.fc38.noarch 81/138 Verifying : shadow-utils-2:4.13-6.fc38.x86_64 82/138 Verifying : sqlite-libs-3.40.1-2.fc38.x86_64 83/138 Verifying : tpm2-tss-4.0.1-3.fc38.x86_64 84/138 Verifying : tzdata-2023c-1.fc38.noarch 85/138 Verifying : xz-libs-5.4.1-1.fc38.x86_64 86/138 Verifying : zlib-1.2.13-3.fc38.x86_64 87/138 Verifying : alternatives-1.24-1.fc38.x86_64 88/138 Verifying : audit-libs-3.1.1-1.fc38.x86_64 89/138 Verifying : coreutils-9.1-12.fc38.x86_64 90/138 Verifying : coreutils-common-9.1-12.fc38.x86_64 91/138 Verifying : curl-8.0.1-2.fc38.x86_64 92/138 Verifying : dbus-libs-1:1.14.8-1.fc38.x86_64 93/138 Verifying : dnf-data-4.16.1-1.fc38.noarch 94/138 Verifying : dnf-plugins-core-4.4.1-1.fc38.noarch 95/138 Verifying : elfutils-default-yama-scope-0.189-2.fc38.noarch 96/138 Verifying : elfutils-libelf-0.189-2.fc38.x86_64 97/138 Verifying : elfutils-libs-0.189-2.fc38.x86_64 98/138 Verifying : fedora-release-38-36.noarch 99/138 Verifying : fedora-release-common-38-36.noarch 100/138 Verifying : fedora-release-identity-basic-38-36.noarch 101/138 Verifying : glib2-2.76.3-1.fc38.x86_64 102/138 Verifying : glibc-2.37-4.fc38.x86_64 103/138 Verifying : glibc-common-2.37-4.fc38.x86_64 104/138 Verifying : glibc-minimal-langpack-2.37-4.fc38.x86_64 105/138 Verifying : libassuan-2.5.6-1.fc38.x86_64 106/138 Verifying : libcurl-8.0.1-2.fc38.x86_64 107/138 Verifying : libdnf-0.70.1-1.fc38.x86_64 108/138 Verifying : libgcc-13.1.1-4.fc38.x86_64 109/138 Verifying : libgcrypt-1.10.2-1.fc38.x86_64 110/138 Verifying : libgomp-13.1.1-4.fc38.x86_64 111/138 Verifying : libgpg-error-1.47-1.fc38.x86_64 112/138 Verifying : libksba-1.6.4-1.fc38.x86_64 113/138 Verifying : libmodulemd-2.15.0-2.fc38.x86_64 114/138 Verifying : libreport-filesystem-2.17.11-1.fc38.noarch 115/138 Verifying : libssh-0.10.5-1.fc38.x86_64 116/138 Verifying : libssh-config-0.10.5-1.fc38.noarch 117/138 Verifying : libstdc++-13.1.1-4.fc38.x86_64 118/138 Verifying : libtirpc-1.3.3-1.rc1.fc38.x86_64 119/138 Verifying : libxcrypt-4.4.35-1.fc38.x86_64 120/138 Verifying : libxml2-2.10.4-1.fc38.x86_64 121/138 Verifying : libzstd-1.5.5-1.fc38.x86_64 122/138 Verifying : openssl-libs-1:3.0.9-1.fc38.x86_64 123/138 Verifying : publicsuffix-list-dafsa-20230614-1.fc38.noarch 124/138 Verifying : python3-3.11.4-1.fc38.x86_64 125/138 Verifying : python3-dnf-4.16.1-1.fc38.noarch 126/138 Verifying : python3-dnf-plugins-core-4.4.1-1.fc38.noarch 127/138 Verifying : python3-hawkey-0.70.1-1.fc38.x86_64 128/138 Verifying : python3-libdnf-0.70.1-1.fc38.x86_64 129/138 Verifying : python3-libs-3.11.4-1.fc38.x86_64 130/138 Verifying : python3-rpm-4.18.1-3.fc38.x86_64 131/138 Verifying : rpm-4.18.1-3.fc38.x86_64 132/138 Verifying : rpm-build-libs-4.18.1-3.fc38.x86_64 133/138 Verifying : rpm-libs-4.18.1-3.fc38.x86_64 134/138 Verifying : rpm-sequoia-1.4.1-1.fc38.x86_64 135/138 Verifying : rpm-sign-libs-4.18.1-3.fc38.x86_64 136/138 Verifying : systemd-libs-253.5-1.fc38.x86_64 137/138 Verifying : zchunk-libs-1.3.1-1.fc38.x86_64 138/138 Installed products updated. Installed: alternatives-1.24-1.fc38.x86_64 audit-libs-3.1.1-1.fc38.x86_64 basesystem-11-15.fc38.noarch bash-5.2.15-3.fc38.x86_64 bzip2-libs-1.0.8-13.fc38.x86_64 ca-certificates-2023.2.60-2.fc38.noarch coreutils-9.1-12.fc38.x86_64 coreutils-common-9.1-12.fc38.x86_64 crypto-policies-20230301-1.gita12f7b2.fc38.noarch curl-8.0.1-2.fc38.x86_64 cyrus-sasl-lib-2.1.28-9.fc38.x86_64 dbus-libs-1:1.14.8-1.fc38.x86_64 dnf-data-4.16.1-1.fc38.noarch dnf-plugins-core-4.4.1-1.fc38.noarch elfutils-default-yama-scope-0.189-2.fc38.noarch elfutils-libelf-0.189-2.fc38.x86_64 elfutils-libs-0.189-2.fc38.x86_64 expat-2.5.0-2.fc38.x86_64 fedora-gpg-keys-38-1.noarch fedora-release-38-36.noarch fedora-release-common-38-36.noarch fedora-release-identity-basic-38-36.noarch fedora-repos-38-1.noarch file-libs-5.44-3.fc38.x86_64 filesystem-3.18-3.fc38.x86_64 findutils-1:4.9.0-3.fc38.x86_64 gawk-5.1.1-5.fc38.x86_64 gdbm-libs-1:1.23-3.fc38.x86_64 glib2-2.76.3-1.fc38.x86_64 glibc-2.37-4.fc38.x86_64 glibc-common-2.37-4.fc38.x86_64 glibc-minimal-langpack-2.37-4.fc38.x86_64 gmp-1:6.2.1-4.fc38.x86_64 gnupg2-2.4.0-3.fc38.x86_64 gnutls-3.8.0-2.fc38.x86_64 gpgme-1.17.1-3.fc38.x86_64 grep-3.8-3.fc38.x86_64 ima-evm-utils-1.4-7.fc38.x86_64 json-c-0.16-4.fc38.x86_64 keyutils-libs-1.6.1-6.fc38.x86_64 krb5-libs-1.20.1-8.fc38.x86_64 libacl-2.3.1-6.fc38.x86_64 libarchive-3.6.1-4.fc38.x86_64 libassuan-2.5.6-1.fc38.x86_64 libattr-2.5.1-6.fc38.x86_64 libb2-0.98.1-8.fc38.x86_64 libblkid-2.38.1-4.fc38.x86_64 libbrotli-1.0.9-11.fc38.x86_64 libcap-2.48-6.fc38.x86_64 libcap-ng-0.8.3-5.fc38.x86_64 libcom_err-1.46.5-4.fc38.x86_64 libcomps-0.1.18-6.fc38.x86_64 libcurl-8.0.1-2.fc38.x86_64 libdnf-0.70.1-1.fc38.x86_64 libeconf-0.4.0-5.fc38.x86_64 libevent-2.1.12-8.fc38.x86_64 libffi-3.4.4-2.fc38.x86_64 libfsverity-1.4-9.fc38.x86_64 libgcc-13.1.1-4.fc38.x86_64 libgcrypt-1.10.2-1.fc38.x86_64 libgomp-13.1.1-4.fc38.x86_64 libgpg-error-1.47-1.fc38.x86_64 libidn2-2.3.4-2.fc38.x86_64 libksba-1.6.4-1.fc38.x86_64 libmodulemd-2.15.0-2.fc38.x86_64 libmount-2.38.1-4.fc38.x86_64 libnghttp2-1.52.0-1.fc38.x86_64 libnsl2-2.0.0-5.fc38.x86_64 libpsl-0.21.2-2.fc38.x86_64 librepo-1.15.1-2.fc38.x86_64 libreport-filesystem-2.17.11-1.fc38.noarch libselinux-3.5-1.fc38.x86_64 libsemanage-3.5-2.fc38.x86_64 libsepol-3.5-1.fc38.x86_64 libsigsegv-2.14-4.fc38.x86_64 libsmartcols-2.38.1-4.fc38.x86_64 libsolv-0.7.22-4.fc38.x86_64 libssh-0.10.5-1.fc38.x86_64 libssh-config-0.10.5-1.fc38.noarch libstdc++-13.1.1-4.fc38.x86_64 libtasn1-4.19.0-2.fc38.x86_64 libtirpc-1.3.3-1.rc1.fc38.x86_64 libunistring-1.1-3.fc38.x86_64 libunistring1.0-1.0-1.fc38.x86_64 libuuid-2.38.1-4.fc38.x86_64 libverto-0.3.2-5.fc38.x86_64 libxcrypt-4.4.35-1.fc38.x86_64 libxml2-2.10.4-1.fc38.x86_64 libyaml-0.2.5-9.fc38.x86_64 libzstd-1.5.5-1.fc38.x86_64 lua-libs-5.4.4-9.fc38.x86_64 lz4-libs-1.9.4-2.fc38.x86_64 mpdecimal-2.5.1-6.fc38.x86_64 mpfr-4.1.1-3.fc38.x86_64 ncurses-base-6.4-3.20230114.fc38.noarch ncurses-libs-6.4-3.20230114.fc38.x86_64 nettle-3.8-3.fc38.x86_64 npth-1.6-12.fc38.x86_64 openldap-2.6.4-1.fc38.x86_64 openssl-libs-1:3.0.9-1.fc38.x86_64 p11-kit-0.24.1-6.fc38.x86_64 p11-kit-trust-0.24.1-6.fc38.x86_64 pcre2-10.42-1.fc38.1.x86_64 pcre2-syntax-10.42-1.fc38.1.noarch popt-1.19-2.fc38.x86_64 publicsuffix-list-dafsa-20230614-1.fc38.noarch python-pip-wheel-22.3.1-2.fc38.noarch python-setuptools-wheel-65.5.1-2.fc38.noarch python3-3.11.4-1.fc38.x86_64 python3-dateutil-1:2.8.2-5.fc38.noarch python3-dbus-1.3.2-2.fc38.x86_64 python3-distro-1.8.0-2.fc38.noarch python3-dnf-4.16.1-1.fc38.noarch python3-dnf-plugins-core-4.4.1-1.fc38.noarch python3-gpg-1.17.1-3.fc38.x86_64 python3-hawkey-0.70.1-1.fc38.x86_64 python3-libcomps-0.1.18-6.fc38.x86_64 python3-libdnf-0.70.1-1.fc38.x86_64 python3-libs-3.11.4-1.fc38.x86_64 python3-rpm-4.18.1-3.fc38.x86_64 python3-six-1.16.0-9.fc38.noarch python3-systemd-235-2.fc38.x86_64 readline-8.2-3.fc38.x86_64 rpm-4.18.1-3.fc38.x86_64 rpm-build-libs-4.18.1-3.fc38.x86_64 rpm-libs-4.18.1-3.fc38.x86_64 rpm-sequoia-1.4.1-1.fc38.x86_64 rpm-sign-libs-4.18.1-3.fc38.x86_64 sed-4.8-12.fc38.x86_64 setup-2.14.3-2.fc38.noarch shadow-utils-2:4.13-6.fc38.x86_64 sqlite-libs-3.40.1-2.fc38.x86_64 systemd-libs-253.5-1.fc38.x86_64 tpm2-tss-4.0.1-3.fc38.x86_64 tzdata-2023c-1.fc38.noarch xz-libs-5.4.1-1.fc38.x86_64 zchunk-libs-1.3.1-1.fc38.x86_64 zlib-1.2.13-3.fc38.x86_64 Complete! Finish(bootstrap): installing dnf tooling Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-38-x86_64-1688587310.077043/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 4.1 INFO: Mock Version: 4.1 INFO: Package manager dnf detected and used (direct choice) Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 4.2 kB/s | 257 B 00:00 fedora 36 MB/s | 83 MB 00:02 updates 16 MB/s | 25 MB 00:01 Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing group/module packages: bash x86_64 5.2.15-3.fc38 fedora 1.8 M bzip2 x86_64 1.0.8-13.fc38 fedora 52 k coreutils x86_64 9.1-12.fc38 updates 1.1 M cpio x86_64 2.13-14.fc38 fedora 276 k diffutils x86_64 3.10-1.fc38 updates 398 k fedora-release-common noarch 38-36 updates 22 k findutils x86_64 1:4.9.0-3.fc38 fedora 492 k gawk x86_64 5.1.1-5.fc38 fedora 1.0 M glibc-minimal-langpack x86_64 2.37-4.fc38 updates 37 k grep x86_64 3.8-3.fc38 fedora 293 k gzip x86_64 1.12-3.fc38 fedora 166 k info x86_64 7.0.2-2.fc38 fedora 181 k patch x86_64 2.7.6-19.fc38 fedora 126 k redhat-rpm-config noarch 252-1.fc38 fedora 83 k rpm-build x86_64 4.18.1-3.fc38 updates 77 k sed x86_64 4.8-12.fc38 fedora 306 k shadow-utils x86_64 2:4.13-6.fc38 fedora 1.3 M tar x86_64 2:1.34-8.fc38 fedora 889 k unzip x86_64 6.0-60.fc38 fedora 184 k util-linux x86_64 2.38.1-4.fc38 fedora 2.3 M which x86_64 2.21-39.fc38 fedora 42 k xz x86_64 5.4.1-1.fc38 fedora 419 k Installing dependencies: alternatives x86_64 1.24-1.fc38 updates 39 k ansible-srpm-macros noarch 1-10.fc38 updates 21 k audit-libs x86_64 3.1.1-1.fc38 updates 116 k authselect x86_64 1.4.2-2.fc38 fedora 144 k authselect-libs x86_64 1.4.2-2.fc38 fedora 249 k basesystem noarch 11-15.fc38 fedora 7.0 k binutils x86_64 2.39-9.fc38 fedora 5.4 M binutils-gold x86_64 2.39-9.fc38 fedora 784 k bzip2-libs x86_64 1.0.8-13.fc38 fedora 41 k ca-certificates noarch 2023.2.60-2.fc38 fedora 845 k coreutils-common x86_64 9.1-12.fc38 updates 2.0 M cracklib x86_64 2.9.7-31.fc38 fedora 92 k crypto-policies noarch 20230301-1.gita12f7b2.fc38 fedora 93 k curl x86_64 8.0.1-2.fc38 updates 349 k cyrus-sasl-lib x86_64 2.1.28-9.fc38 fedora 794 k debugedit x86_64 5.0-7.fc38 fedora 78 k dwz x86_64 0.15-2.fc38 fedora 135 k ed x86_64 1.19-2.fc38 fedora 78 k efi-srpm-macros noarch 5-7.fc38 fedora 22 k elfutils x86_64 0.189-2.fc38 updates 536 k elfutils-debuginfod-client x86_64 0.189-2.fc38 updates 39 k elfutils-default-yama-scope noarch 0.189-2.fc38 updates 15 k elfutils-libelf x86_64 0.189-2.fc38 updates 196 k elfutils-libs x86_64 0.189-2.fc38 updates 260 k fedora-gpg-keys noarch 38-1 fedora 126 k fedora-release noarch 38-36 updates 12 k fedora-release-identity-basic noarch 38-36 updates 13 k fedora-repos noarch 38-1 fedora 9.1 k file x86_64 5.44-3.fc38 fedora 49 k file-libs x86_64 5.44-3.fc38 fedora 730 k filesystem x86_64 3.18-3.fc38 fedora 1.1 M fonts-srpm-macros noarch 1:2.0.5-11.fc38 fedora 26 k fpc-srpm-macros noarch 1.3-7.fc38 fedora 7.8 k gdb-minimal x86_64 13.2-2.fc38 updates 4.2 M gdbm-libs x86_64 1:1.23-3.fc38 fedora 56 k ghc-srpm-macros noarch 1.6.1-1.fc38 fedora 8.0 k glibc x86_64 2.37-4.fc38 updates 2.1 M glibc-common x86_64 2.37-4.fc38 updates 314 k glibc-gconv-extra x86_64 2.37-4.fc38 updates 1.6 M gmp x86_64 1:6.2.1-4.fc38 fedora 313 k gnat-srpm-macros noarch 6-2.fc38 fedora 8.8 k go-srpm-macros noarch 3.2.0-2.fc38 fedora 27 k jansson x86_64 2.13.1-6.fc38 fedora 44 k kernel-srpm-macros noarch 1.0-19.fc38 updates 10 k keyutils-libs x86_64 1.6.1-6.fc38 fedora 31 k krb5-libs x86_64 1.20.1-8.fc38 fedora 727 k libacl x86_64 2.3.1-6.fc38 fedora 23 k libarchive x86_64 3.6.1-4.fc38 fedora 400 k libattr x86_64 2.5.1-6.fc38 fedora 18 k libblkid x86_64 2.38.1-4.fc38 fedora 106 k libbrotli x86_64 1.0.9-11.fc38 fedora 317 k libcap x86_64 2.48-6.fc38 fedora 67 k libcap-ng x86_64 0.8.3-5.fc38 fedora 32 k libcom_err x86_64 1.46.5-4.fc38 fedora 26 k libcurl x86_64 8.0.1-2.fc38 updates 312 k libdb x86_64 5.3.28-55.fc38 fedora 758 k libeconf x86_64 0.4.0-5.fc38 fedora 27 k libevent x86_64 2.1.12-8.fc38 fedora 257 k libfdisk x86_64 2.38.1-4.fc38 fedora 161 k libffi x86_64 3.4.4-2.fc38 fedora 38 k libgcc x86_64 13.1.1-4.fc38 updates 107 k libgomp x86_64 13.1.1-4.fc38 updates 317 k libidn2 x86_64 2.3.4-2.fc38 fedora 160 k libmount x86_64 2.38.1-4.fc38 fedora 135 k libnghttp2 x86_64 1.52.0-1.fc38 fedora 75 k libnsl2 x86_64 2.0.0-5.fc38 fedora 30 k libpkgconf x86_64 1.8.0-6.fc38 fedora 35 k libpsl x86_64 0.21.2-2.fc38 fedora 65 k libpwquality x86_64 1.4.5-3.fc38 fedora 119 k libselinux x86_64 3.5-1.fc38 fedora 87 k libsemanage x86_64 3.5-2.fc38 fedora 120 k libsepol x86_64 3.5-1.fc38 fedora 324 k libsigsegv x86_64 2.14-4.fc38 fedora 27 k libsmartcols x86_64 2.38.1-4.fc38 fedora 64 k libssh x86_64 0.10.5-1.fc38 updates 211 k libssh-config noarch 0.10.5-1.fc38 updates 9.0 k libstdc++ x86_64 13.1.1-4.fc38 updates 861 k libtasn1 x86_64 4.19.0-2.fc38 fedora 74 k libtirpc x86_64 1.3.3-1.rc1.fc38 updates 93 k libunistring1.0 x86_64 1.0-1.fc38 fedora 539 k libutempter x86_64 1.2.1-8.fc38 fedora 26 k libuuid x86_64 2.38.1-4.fc38 fedora 28 k libverto x86_64 0.3.2-5.fc38 fedora 21 k libxcrypt x86_64 4.4.35-1.fc38 updates 119 k libxml2 x86_64 2.10.4-1.fc38 updates 701 k libzstd x86_64 1.5.5-1.fc38 updates 308 k lua-libs x86_64 5.4.4-9.fc38 fedora 133 k lua-srpm-macros noarch 1-8.fc38 fedora 8.6 k lz4-libs x86_64 1.9.4-2.fc38 fedora 67 k mpfr x86_64 4.1.1-3.fc38 fedora 600 k ncurses-base noarch 6.4-3.20230114.fc38 fedora 87 k ncurses-libs x86_64 6.4-3.20230114.fc38 fedora 333 k ocaml-srpm-macros noarch 7-3.fc38 fedora 13 k openblas-srpm-macros noarch 2-13.fc38 fedora 7.5 k openldap x86_64 2.6.4-1.fc38 fedora 254 k openssl-libs x86_64 1:3.0.9-1.fc38 updates 2.1 M p11-kit x86_64 0.24.1-6.fc38 fedora 359 k p11-kit-trust x86_64 0.24.1-6.fc38 fedora 136 k package-notes-srpm-macros noarch 0.5-8.fc38 updates 11 k pam x86_64 1.5.2-16.fc38 fedora 560 k pam-libs x86_64 1.5.2-16.fc38 fedora 58 k pcre2 x86_64 10.42-1.fc38.1 fedora 234 k pcre2-syntax noarch 10.42-1.fc38.1 fedora 144 k perl-srpm-macros noarch 1-48.fc38 fedora 8.4 k pkgconf x86_64 1.8.0-6.fc38 fedora 41 k pkgconf-m4 noarch 1.8.0-6.fc38 fedora 14 k pkgconf-pkg-config x86_64 1.8.0-6.fc38 fedora 9.6 k popt x86_64 1.19-2.fc38 fedora 67 k publicsuffix-list-dafsa noarch 20230614-1.fc38 updates 57 k pyproject-srpm-macros noarch 1.9.0-1.fc38 updates 15 k python-srpm-macros noarch 3.11-10.fc38 fedora 26 k qt5-srpm-macros noarch 5.15.10-1.fc38 updates 8.2 k readline x86_64 8.2-3.fc38 fedora 212 k rpm x86_64 4.18.1-3.fc38 updates 570 k rpm-build-libs x86_64 4.18.1-3.fc38 updates 94 k rpm-libs x86_64 4.18.1-3.fc38 updates 313 k rpm-sequoia x86_64 1.4.1-1.fc38 updates 842 k rpmautospec-rpm-macros noarch 0.3.5-1.fc38 fedora 9.3 k rust-srpm-macros noarch 24-2.fc38 updates 12 k setup noarch 2.14.3-2.fc38 fedora 152 k sqlite-libs x86_64 3.40.1-2.fc38 fedora 666 k systemd-libs x86_64 253.5-1.fc38 updates 652 k tzdata noarch 2023c-1.fc38 fedora 718 k util-linux-core x86_64 2.38.1-4.fc38 fedora 473 k xxhash-libs x86_64 0.8.1-4.fc38 fedora 40 k xz-libs x86_64 5.4.1-1.fc38 fedora 108 k zip x86_64 3.0-36.fc38 fedora 265 k zlib x86_64 1.2.13-3.fc38 fedora 95 k zstd x86_64 1.5.5-1.fc38 updates 482 k Installing Groups: Buildsystem building group Transaction Summary ================================================================================ Install 151 Packages Total download size: 53 M Installed size: 183 M Downloading Packages: (1/151): basesystem-11-15.fc38.noarch.rpm 101 kB/s | 7.0 kB 00:00 (2/151): authselect-1.4.2-2.fc38.x86_64.rpm 814 kB/s | 144 kB 00:00 (3/151): authselect-libs-1.4.2-2.fc38.x86_64.rp 1.0 MB/s | 249 kB 00:00 (4/151): bash-5.2.15-3.fc38.x86_64.rpm 5.7 MB/s | 1.8 MB 00:00 (5/151): binutils-gold-2.39-9.fc38.x86_64.rpm 5.4 MB/s | 784 kB 00:00 (6/151): bzip2-1.0.8-13.fc38.x86_64.rpm 1.4 MB/s | 52 kB 00:00 (7/151): bzip2-libs-1.0.8-13.fc38.x86_64.rpm 1.2 MB/s | 41 kB 00:00 (8/151): cpio-2.13-14.fc38.x86_64.rpm 6.8 MB/s | 276 kB 00:00 (9/151): cracklib-2.9.7-31.fc38.x86_64.rpm 2.5 MB/s | 92 kB 00:00 (10/151): crypto-policies-20230301-1.gita12f7b2 2.6 MB/s | 93 kB 00:00 (11/151): ca-certificates-2023.2.60-2.fc38.noar 5.6 MB/s | 845 kB 00:00 (12/151): debugedit-5.0-7.fc38.x86_64.rpm 2.1 MB/s | 78 kB 00:00 (13/151): cyrus-sasl-lib-2.1.28-9.fc38.x86_64.r 11 MB/s | 794 kB 00:00 (14/151): ed-1.19-2.fc38.x86_64.rpm 2.2 MB/s | 78 kB 00:00 (15/151): dwz-0.15-2.fc38.x86_64.rpm 1.9 MB/s | 135 kB 00:00 (16/151): efi-srpm-macros-5-7.fc38.noarch.rpm 645 kB/s | 22 kB 00:00 (17/151): fedora-repos-38-1.noarch.rpm 265 kB/s | 9.1 kB 00:00 (18/151): fedora-gpg-keys-38-1.noarch.rpm 1.8 MB/s | 126 kB 00:00 (19/151): file-5.44-3.fc38.x86_64.rpm 1.4 MB/s | 49 kB 00:00 (20/151): filesystem-3.18-3.fc38.x86_64.rpm 14 MB/s | 1.1 MB 00:00 (21/151): findutils-4.9.0-3.fc38.x86_64.rpm 12 MB/s | 492 kB 00:00 (22/151): fonts-srpm-macros-2.0.5-11.fc38.noarc 759 kB/s | 26 kB 00:00 (23/151): fpc-srpm-macros-1.3-7.fc38.noarch.rpm 226 kB/s | 7.8 kB 00:00 (24/151): file-libs-5.44-3.fc38.x86_64.rpm 3.4 MB/s | 730 kB 00:00 (25/151): gdbm-libs-1.23-3.fc38.x86_64.rpm 1.6 MB/s | 56 kB 00:00 (26/151): ghc-srpm-macros-1.6.1-1.fc38.noarch.r 232 kB/s | 8.0 kB 00:00 (27/151): gawk-5.1.1-5.fc38.x86_64.rpm 9.1 MB/s | 1.0 MB 00:00 (28/151): gnat-srpm-macros-6-2.fc38.noarch.rpm 254 kB/s | 8.8 kB 00:00 (29/151): gmp-6.2.1-4.fc38.x86_64.rpm 2.9 MB/s | 313 kB 00:00 (30/151): go-srpm-macros-3.2.0-2.fc38.noarch.rp 355 kB/s | 27 kB 00:00 (31/151): gzip-1.12-3.fc38.x86_64.rpm 3.7 MB/s | 166 kB 00:00 (32/151): grep-3.8-3.fc38.x86_64.rpm 2.7 MB/s | 293 kB 00:00 (33/151): info-7.0.2-2.fc38.x86_64.rpm 4.9 MB/s | 181 kB 00:00 (34/151): jansson-2.13.1-6.fc38.x86_64.rpm 1.2 MB/s | 44 kB 00:00 (35/151): keyutils-libs-1.6.1-6.fc38.x86_64.rpm 896 kB/s | 31 kB 00:00 (36/151): libacl-2.3.1-6.fc38.x86_64.rpm 665 kB/s | 23 kB 00:00 (37/151): libarchive-3.6.1-4.fc38.x86_64.rpm 5.6 MB/s | 400 kB 00:00 (38/151): libattr-2.5.1-6.fc38.x86_64.rpm 507 kB/s | 18 kB 00:00 (39/151): krb5-libs-1.20.1-8.fc38.x86_64.rpm 4.0 MB/s | 727 kB 00:00 (40/151): libblkid-2.38.1-4.fc38.x86_64.rpm 2.9 MB/s | 106 kB 00:00 (41/151): libcap-2.48-6.fc38.x86_64.rpm 1.8 MB/s | 67 kB 00:00 (42/151): libcap-ng-0.8.3-5.fc38.x86_64.rpm 862 kB/s | 32 kB 00:00 (43/151): libbrotli-1.0.9-11.fc38.x86_64.rpm 2.9 MB/s | 317 kB 00:00 (44/151): libcom_err-1.46.5-4.fc38.x86_64.rpm 646 kB/s | 26 kB 00:00 (45/151): libeconf-0.4.0-5.fc38.x86_64.rpm 250 kB/s | 27 kB 00:00 (46/151): libevent-2.1.12-8.fc38.x86_64.rpm 3.6 MB/s | 257 kB 00:00 (47/151): libfdisk-2.38.1-4.fc38.x86_64.rpm 4.3 MB/s | 161 kB 00:00 (48/151): libffi-3.4.4-2.fc38.x86_64.rpm 1.1 MB/s | 38 kB 00:00 (49/151): libdb-5.3.28-55.fc38.x86_64.rpm 2.6 MB/s | 758 kB 00:00 (50/151): libidn2-2.3.4-2.fc38.x86_64.rpm 4.4 MB/s | 160 kB 00:00 (51/151): libnghttp2-1.52.0-1.fc38.x86_64.rpm 2.1 MB/s | 75 kB 00:00 (52/151): libmount-2.38.1-4.fc38.x86_64.rpm 1.9 MB/s | 135 kB 00:00 (53/151): libnsl2-2.0.0-5.fc38.x86_64.rpm 861 kB/s | 30 kB 00:00 (54/151): libpkgconf-1.8.0-6.fc38.x86_64.rpm 1.0 MB/s | 35 kB 00:00 (55/151): libpsl-0.21.2-2.fc38.x86_64.rpm 1.8 MB/s | 65 kB 00:00 (56/151): libselinux-3.5-1.fc38.x86_64.rpm 2.4 MB/s | 87 kB 00:00 (57/151): libpwquality-1.4.5-3.fc38.x86_64.rpm 1.7 MB/s | 119 kB 00:00 (58/151): libsemanage-3.5-2.fc38.x86_64.rpm 3.3 MB/s | 120 kB 00:00 (59/151): libsigsegv-2.14-4.fc38.x86_64.rpm 764 kB/s | 27 kB 00:00 (60/151): libsmartcols-2.38.1-4.fc38.x86_64.rpm 1.8 MB/s | 64 kB 00:00 (61/151): libsepol-3.5-1.fc38.x86_64.rpm 3.0 MB/s | 324 kB 00:00 (62/151): libtasn1-4.19.0-2.fc38.x86_64.rpm 2.1 MB/s | 74 kB 00:00 (63/151): libutempter-1.2.1-8.fc38.x86_64.rpm 746 kB/s | 26 kB 00:00 (64/151): libuuid-2.38.1-4.fc38.x86_64.rpm 799 kB/s | 28 kB 00:00 (65/151): libverto-0.3.2-5.fc38.x86_64.rpm 599 kB/s | 21 kB 00:00 (66/151): lua-libs-5.4.4-9.fc38.x86_64.rpm 3.6 MB/s | 133 kB 00:00 (67/151): libunistring1.0-1.0-1.fc38.x86_64.rpm 2.7 MB/s | 539 kB 00:00 (68/151): lua-srpm-macros-1-8.fc38.noarch.rpm 250 kB/s | 8.6 kB 00:00 (69/151): lz4-libs-1.9.4-2.fc38.x86_64.rpm 1.8 MB/s | 67 kB 00:00 (70/151): ncurses-base-6.4-3.20230114.fc38.noar 2.4 MB/s | 87 kB 00:00 (71/151): mpfr-4.1.1-3.fc38.x86_64.rpm 5.6 MB/s | 600 kB 00:00 (72/151): ocaml-srpm-macros-7-3.fc38.noarch.rpm 391 kB/s | 13 kB 00:00 (73/151): ncurses-libs-6.4-3.20230114.fc38.x86_ 3.1 MB/s | 333 kB 00:00 (74/151): openblas-srpm-macros-2-13.fc38.noarch 218 kB/s | 7.5 kB 00:00 (75/151): p11-kit-0.24.1-6.fc38.x86_64.rpm 5.0 MB/s | 359 kB 00:00 (76/151): openldap-2.6.4-1.fc38.x86_64.rpm 2.4 MB/s | 254 kB 00:00 (77/151): p11-kit-trust-0.24.1-6.fc38.x86_64.rp 3.7 MB/s | 136 kB 00:00 (78/151): pam-libs-1.5.2-16.fc38.x86_64.rpm 1.6 MB/s | 58 kB 00:00 (79/151): patch-2.7.6-19.fc38.x86_64.rpm 3.3 MB/s | 126 kB 00:00 (80/151): pcre2-10.42-1.fc38.1.x86_64.rpm 3.3 MB/s | 234 kB 00:00 (81/151): pam-1.5.2-16.fc38.x86_64.rpm 3.1 MB/s | 560 kB 00:00 (82/151): pcre2-syntax-10.42-1.fc38.1.noarch.rp 3.7 MB/s | 144 kB 00:00 (83/151): perl-srpm-macros-1-48.fc38.noarch.rpm 243 kB/s | 8.4 kB 00:00 (84/151): pkgconf-1.8.0-6.fc38.x86_64.rpm 1.1 MB/s | 41 kB 00:00 (85/151): pkgconf-m4-1.8.0-6.fc38.noarch.rpm 350 kB/s | 14 kB 00:00 (86/151): pkgconf-pkg-config-1.8.0-6.fc38.x86_6 260 kB/s | 9.6 kB 00:00 (87/151): popt-1.19-2.fc38.x86_64.rpm 1.8 MB/s | 67 kB 00:00 (88/151): python-srpm-macros-3.11-10.fc38.noarc 745 kB/s | 26 kB 00:00 (89/151): redhat-rpm-config-252-1.fc38.noarch.r 2.1 MB/s | 83 kB 00:00 (90/151): readline-8.2-3.fc38.x86_64.rpm 2.9 MB/s | 212 kB 00:00 (91/151): rpmautospec-rpm-macros-0.3.5-1.fc38.n 269 kB/s | 9.3 kB 00:00 (92/151): setup-2.14.3-2.fc38.noarch.rpm 4.1 MB/s | 152 kB 00:00 (93/151): sed-4.8-12.fc38.x86_64.rpm 2.9 MB/s | 306 kB 00:00 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-------------------------------------------------------------------------------- Total 12 MB/s | 53 MB 00:04 fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0xEB10B464: Userid : "Fedora (38) " Fingerprint: 6A51 BBAB BA3D 5467 B617 1221 809A 8D7C EB10 B464 From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. 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16/151 Verifying : efi-srpm-macros-5-7.fc38.noarch 17/151 Verifying : fedora-gpg-keys-38-1.noarch 18/151 Verifying : fedora-repos-38-1.noarch 19/151 Verifying : file-5.44-3.fc38.x86_64 20/151 Verifying : file-libs-5.44-3.fc38.x86_64 21/151 Verifying : filesystem-3.18-3.fc38.x86_64 22/151 Verifying : findutils-1:4.9.0-3.fc38.x86_64 23/151 Verifying : fonts-srpm-macros-1:2.0.5-11.fc38.noarch 24/151 Verifying : fpc-srpm-macros-1.3-7.fc38.noarch 25/151 Verifying : gawk-5.1.1-5.fc38.x86_64 26/151 Verifying : gdbm-libs-1:1.23-3.fc38.x86_64 27/151 Verifying : ghc-srpm-macros-1.6.1-1.fc38.noarch 28/151 Verifying : gmp-1:6.2.1-4.fc38.x86_64 29/151 Verifying : gnat-srpm-macros-6-2.fc38.noarch 30/151 Verifying : go-srpm-macros-3.2.0-2.fc38.noarch 31/151 Verifying : grep-3.8-3.fc38.x86_64 32/151 Verifying : gzip-1.12-3.fc38.x86_64 33/151 Verifying : info-7.0.2-2.fc38.x86_64 34/151 Verifying : jansson-2.13.1-6.fc38.x86_64 35/151 Verifying : keyutils-libs-1.6.1-6.fc38.x86_64 36/151 Verifying : krb5-libs-1.20.1-8.fc38.x86_64 37/151 Verifying : libacl-2.3.1-6.fc38.x86_64 38/151 Verifying : libarchive-3.6.1-4.fc38.x86_64 39/151 Verifying : libattr-2.5.1-6.fc38.x86_64 40/151 Verifying : libblkid-2.38.1-4.fc38.x86_64 41/151 Verifying : libbrotli-1.0.9-11.fc38.x86_64 42/151 Verifying : libcap-2.48-6.fc38.x86_64 43/151 Verifying : libcap-ng-0.8.3-5.fc38.x86_64 44/151 Verifying : libcom_err-1.46.5-4.fc38.x86_64 45/151 Verifying : libdb-5.3.28-55.fc38.x86_64 46/151 Verifying : libeconf-0.4.0-5.fc38.x86_64 47/151 Verifying : libevent-2.1.12-8.fc38.x86_64 48/151 Verifying : libfdisk-2.38.1-4.fc38.x86_64 49/151 Verifying : libffi-3.4.4-2.fc38.x86_64 50/151 Verifying : libidn2-2.3.4-2.fc38.x86_64 51/151 Verifying : libmount-2.38.1-4.fc38.x86_64 52/151 Verifying : libnghttp2-1.52.0-1.fc38.x86_64 53/151 Verifying : libnsl2-2.0.0-5.fc38.x86_64 54/151 Verifying : libpkgconf-1.8.0-6.fc38.x86_64 55/151 Verifying : libpsl-0.21.2-2.fc38.x86_64 56/151 Verifying : libpwquality-1.4.5-3.fc38.x86_64 57/151 Verifying : libselinux-3.5-1.fc38.x86_64 58/151 Verifying : libsemanage-3.5-2.fc38.x86_64 59/151 Verifying : libsepol-3.5-1.fc38.x86_64 60/151 Verifying : libsigsegv-2.14-4.fc38.x86_64 61/151 Verifying : libsmartcols-2.38.1-4.fc38.x86_64 62/151 Verifying : libtasn1-4.19.0-2.fc38.x86_64 63/151 Verifying : libunistring1.0-1.0-1.fc38.x86_64 64/151 Verifying : libutempter-1.2.1-8.fc38.x86_64 65/151 Verifying : libuuid-2.38.1-4.fc38.x86_64 66/151 Verifying : libverto-0.3.2-5.fc38.x86_64 67/151 Verifying : lua-libs-5.4.4-9.fc38.x86_64 68/151 Verifying : lua-srpm-macros-1-8.fc38.noarch 69/151 Verifying : lz4-libs-1.9.4-2.fc38.x86_64 70/151 Verifying : mpfr-4.1.1-3.fc38.x86_64 71/151 Verifying : ncurses-base-6.4-3.20230114.fc38.noarch 72/151 Verifying : ncurses-libs-6.4-3.20230114.fc38.x86_64 73/151 Verifying : ocaml-srpm-macros-7-3.fc38.noarch 74/151 Verifying : openblas-srpm-macros-2-13.fc38.noarch 75/151 Verifying : openldap-2.6.4-1.fc38.x86_64 76/151 Verifying : p11-kit-0.24.1-6.fc38.x86_64 77/151 Verifying : p11-kit-trust-0.24.1-6.fc38.x86_64 78/151 Verifying : pam-1.5.2-16.fc38.x86_64 79/151 Verifying : pam-libs-1.5.2-16.fc38.x86_64 80/151 Verifying : patch-2.7.6-19.fc38.x86_64 81/151 Verifying : pcre2-10.42-1.fc38.1.x86_64 82/151 Verifying : pcre2-syntax-10.42-1.fc38.1.noarch 83/151 Verifying : perl-srpm-macros-1-48.fc38.noarch 84/151 Verifying : pkgconf-1.8.0-6.fc38.x86_64 85/151 Verifying : pkgconf-m4-1.8.0-6.fc38.noarch 86/151 Verifying : pkgconf-pkg-config-1.8.0-6.fc38.x86_64 87/151 Verifying : popt-1.19-2.fc38.x86_64 88/151 Verifying : python-srpm-macros-3.11-10.fc38.noarch 89/151 Verifying : readline-8.2-3.fc38.x86_64 90/151 Verifying : redhat-rpm-config-252-1.fc38.noarch 91/151 Verifying : rpmautospec-rpm-macros-0.3.5-1.fc38.noarch 92/151 Verifying : sed-4.8-12.fc38.x86_64 93/151 Verifying : setup-2.14.3-2.fc38.noarch 94/151 Verifying : shadow-utils-2:4.13-6.fc38.x86_64 95/151 Verifying : sqlite-libs-3.40.1-2.fc38.x86_64 96/151 Verifying : tar-2:1.34-8.fc38.x86_64 97/151 Verifying : tzdata-2023c-1.fc38.noarch 98/151 Verifying : unzip-6.0-60.fc38.x86_64 99/151 Verifying : util-linux-2.38.1-4.fc38.x86_64 100/151 Verifying : util-linux-core-2.38.1-4.fc38.x86_64 101/151 Verifying : which-2.21-39.fc38.x86_64 102/151 Verifying : xxhash-libs-0.8.1-4.fc38.x86_64 103/151 Verifying : xz-5.4.1-1.fc38.x86_64 104/151 Verifying : xz-libs-5.4.1-1.fc38.x86_64 105/151 Verifying : zip-3.0-36.fc38.x86_64 106/151 Verifying : zlib-1.2.13-3.fc38.x86_64 107/151 Verifying : alternatives-1.24-1.fc38.x86_64 108/151 Verifying : ansible-srpm-macros-1-10.fc38.noarch 109/151 Verifying : audit-libs-3.1.1-1.fc38.x86_64 110/151 Verifying : coreutils-9.1-12.fc38.x86_64 111/151 Verifying : coreutils-common-9.1-12.fc38.x86_64 112/151 Verifying : curl-8.0.1-2.fc38.x86_64 113/151 Verifying : diffutils-3.10-1.fc38.x86_64 114/151 Verifying : elfutils-0.189-2.fc38.x86_64 115/151 Verifying : elfutils-debuginfod-client-0.189-2.fc38.x86_64 116/151 Verifying : elfutils-default-yama-scope-0.189-2.fc38.noarch 117/151 Verifying : elfutils-libelf-0.189-2.fc38.x86_64 118/151 Verifying : elfutils-libs-0.189-2.fc38.x86_64 119/151 Verifying : fedora-release-38-36.noarch 120/151 Verifying : fedora-release-common-38-36.noarch 121/151 Verifying : fedora-release-identity-basic-38-36.noarch 122/151 Verifying : gdb-minimal-13.2-2.fc38.x86_64 123/151 Verifying : glibc-2.37-4.fc38.x86_64 124/151 Verifying : glibc-common-2.37-4.fc38.x86_64 125/151 Verifying : glibc-gconv-extra-2.37-4.fc38.x86_64 126/151 Verifying : glibc-minimal-langpack-2.37-4.fc38.x86_64 127/151 Verifying : kernel-srpm-macros-1.0-19.fc38.noarch 128/151 Verifying : libcurl-8.0.1-2.fc38.x86_64 129/151 Verifying : libgcc-13.1.1-4.fc38.x86_64 130/151 Verifying : libgomp-13.1.1-4.fc38.x86_64 131/151 Verifying : libssh-0.10.5-1.fc38.x86_64 132/151 Verifying : libssh-config-0.10.5-1.fc38.noarch 133/151 Verifying : libstdc++-13.1.1-4.fc38.x86_64 134/151 Verifying : libtirpc-1.3.3-1.rc1.fc38.x86_64 135/151 Verifying : libxcrypt-4.4.35-1.fc38.x86_64 136/151 Verifying : libxml2-2.10.4-1.fc38.x86_64 137/151 Verifying : libzstd-1.5.5-1.fc38.x86_64 138/151 Verifying : openssl-libs-1:3.0.9-1.fc38.x86_64 139/151 Verifying : package-notes-srpm-macros-0.5-8.fc38.noarch 140/151 Verifying : publicsuffix-list-dafsa-20230614-1.fc38.noarch 141/151 Verifying : pyproject-srpm-macros-1.9.0-1.fc38.noarch 142/151 Verifying : qt5-srpm-macros-5.15.10-1.fc38.noarch 143/151 Verifying : rpm-4.18.1-3.fc38.x86_64 144/151 Verifying : rpm-build-4.18.1-3.fc38.x86_64 145/151 Verifying : rpm-build-libs-4.18.1-3.fc38.x86_64 146/151 Verifying : rpm-libs-4.18.1-3.fc38.x86_64 147/151 Verifying : rpm-sequoia-1.4.1-1.fc38.x86_64 148/151 Verifying : rust-srpm-macros-24-2.fc38.noarch 149/151 Verifying : systemd-libs-253.5-1.fc38.x86_64 150/151 Verifying : zstd-1.5.5-1.fc38.x86_64 151/151 Installed: alternatives-1.24-1.fc38.x86_64 ansible-srpm-macros-1-10.fc38.noarch audit-libs-3.1.1-1.fc38.x86_64 authselect-1.4.2-2.fc38.x86_64 authselect-libs-1.4.2-2.fc38.x86_64 basesystem-11-15.fc38.noarch bash-5.2.15-3.fc38.x86_64 binutils-2.39-9.fc38.x86_64 binutils-gold-2.39-9.fc38.x86_64 bzip2-1.0.8-13.fc38.x86_64 bzip2-libs-1.0.8-13.fc38.x86_64 ca-certificates-2023.2.60-2.fc38.noarch coreutils-9.1-12.fc38.x86_64 coreutils-common-9.1-12.fc38.x86_64 cpio-2.13-14.fc38.x86_64 cracklib-2.9.7-31.fc38.x86_64 crypto-policies-20230301-1.gita12f7b2.fc38.noarch curl-8.0.1-2.fc38.x86_64 cyrus-sasl-lib-2.1.28-9.fc38.x86_64 debugedit-5.0-7.fc38.x86_64 diffutils-3.10-1.fc38.x86_64 dwz-0.15-2.fc38.x86_64 ed-1.19-2.fc38.x86_64 efi-srpm-macros-5-7.fc38.noarch elfutils-0.189-2.fc38.x86_64 elfutils-debuginfod-client-0.189-2.fc38.x86_64 elfutils-default-yama-scope-0.189-2.fc38.noarch elfutils-libelf-0.189-2.fc38.x86_64 elfutils-libs-0.189-2.fc38.x86_64 fedora-gpg-keys-38-1.noarch fedora-release-38-36.noarch fedora-release-common-38-36.noarch fedora-release-identity-basic-38-36.noarch fedora-repos-38-1.noarch file-5.44-3.fc38.x86_64 file-libs-5.44-3.fc38.x86_64 filesystem-3.18-3.fc38.x86_64 findutils-1:4.9.0-3.fc38.x86_64 fonts-srpm-macros-1:2.0.5-11.fc38.noarch fpc-srpm-macros-1.3-7.fc38.noarch gawk-5.1.1-5.fc38.x86_64 gdb-minimal-13.2-2.fc38.x86_64 gdbm-libs-1:1.23-3.fc38.x86_64 ghc-srpm-macros-1.6.1-1.fc38.noarch glibc-2.37-4.fc38.x86_64 glibc-common-2.37-4.fc38.x86_64 glibc-gconv-extra-2.37-4.fc38.x86_64 glibc-minimal-langpack-2.37-4.fc38.x86_64 gmp-1:6.2.1-4.fc38.x86_64 gnat-srpm-macros-6-2.fc38.noarch go-srpm-macros-3.2.0-2.fc38.noarch grep-3.8-3.fc38.x86_64 gzip-1.12-3.fc38.x86_64 info-7.0.2-2.fc38.x86_64 jansson-2.13.1-6.fc38.x86_64 kernel-srpm-macros-1.0-19.fc38.noarch keyutils-libs-1.6.1-6.fc38.x86_64 krb5-libs-1.20.1-8.fc38.x86_64 libacl-2.3.1-6.fc38.x86_64 libarchive-3.6.1-4.fc38.x86_64 libattr-2.5.1-6.fc38.x86_64 libblkid-2.38.1-4.fc38.x86_64 libbrotli-1.0.9-11.fc38.x86_64 libcap-2.48-6.fc38.x86_64 libcap-ng-0.8.3-5.fc38.x86_64 libcom_err-1.46.5-4.fc38.x86_64 libcurl-8.0.1-2.fc38.x86_64 libdb-5.3.28-55.fc38.x86_64 libeconf-0.4.0-5.fc38.x86_64 libevent-2.1.12-8.fc38.x86_64 libfdisk-2.38.1-4.fc38.x86_64 libffi-3.4.4-2.fc38.x86_64 libgcc-13.1.1-4.fc38.x86_64 libgomp-13.1.1-4.fc38.x86_64 libidn2-2.3.4-2.fc38.x86_64 libmount-2.38.1-4.fc38.x86_64 libnghttp2-1.52.0-1.fc38.x86_64 libnsl2-2.0.0-5.fc38.x86_64 libpkgconf-1.8.0-6.fc38.x86_64 libpsl-0.21.2-2.fc38.x86_64 libpwquality-1.4.5-3.fc38.x86_64 libselinux-3.5-1.fc38.x86_64 libsemanage-3.5-2.fc38.x86_64 libsepol-3.5-1.fc38.x86_64 libsigsegv-2.14-4.fc38.x86_64 libsmartcols-2.38.1-4.fc38.x86_64 libssh-0.10.5-1.fc38.x86_64 libssh-config-0.10.5-1.fc38.noarch libstdc++-13.1.1-4.fc38.x86_64 libtasn1-4.19.0-2.fc38.x86_64 libtirpc-1.3.3-1.rc1.fc38.x86_64 libunistring1.0-1.0-1.fc38.x86_64 libutempter-1.2.1-8.fc38.x86_64 libuuid-2.38.1-4.fc38.x86_64 libverto-0.3.2-5.fc38.x86_64 libxcrypt-4.4.35-1.fc38.x86_64 libxml2-2.10.4-1.fc38.x86_64 libzstd-1.5.5-1.fc38.x86_64 lua-libs-5.4.4-9.fc38.x86_64 lua-srpm-macros-1-8.fc38.noarch lz4-libs-1.9.4-2.fc38.x86_64 mpfr-4.1.1-3.fc38.x86_64 ncurses-base-6.4-3.20230114.fc38.noarch ncurses-libs-6.4-3.20230114.fc38.x86_64 ocaml-srpm-macros-7-3.fc38.noarch openblas-srpm-macros-2-13.fc38.noarch openldap-2.6.4-1.fc38.x86_64 openssl-libs-1:3.0.9-1.fc38.x86_64 p11-kit-0.24.1-6.fc38.x86_64 p11-kit-trust-0.24.1-6.fc38.x86_64 package-notes-srpm-macros-0.5-8.fc38.noarch pam-1.5.2-16.fc38.x86_64 pam-libs-1.5.2-16.fc38.x86_64 patch-2.7.6-19.fc38.x86_64 pcre2-10.42-1.fc38.1.x86_64 pcre2-syntax-10.42-1.fc38.1.noarch perl-srpm-macros-1-48.fc38.noarch pkgconf-1.8.0-6.fc38.x86_64 pkgconf-m4-1.8.0-6.fc38.noarch pkgconf-pkg-config-1.8.0-6.fc38.x86_64 popt-1.19-2.fc38.x86_64 publicsuffix-list-dafsa-20230614-1.fc38.noarch pyproject-srpm-macros-1.9.0-1.fc38.noarch python-srpm-macros-3.11-10.fc38.noarch qt5-srpm-macros-5.15.10-1.fc38.noarch readline-8.2-3.fc38.x86_64 redhat-rpm-config-252-1.fc38.noarch rpm-4.18.1-3.fc38.x86_64 rpm-build-4.18.1-3.fc38.x86_64 rpm-build-libs-4.18.1-3.fc38.x86_64 rpm-libs-4.18.1-3.fc38.x86_64 rpm-sequoia-1.4.1-1.fc38.x86_64 rpmautospec-rpm-macros-0.3.5-1.fc38.noarch rust-srpm-macros-24-2.fc38.noarch sed-4.8-12.fc38.x86_64 setup-2.14.3-2.fc38.noarch shadow-utils-2:4.13-6.fc38.x86_64 sqlite-libs-3.40.1-2.fc38.x86_64 systemd-libs-253.5-1.fc38.x86_64 tar-2:1.34-8.fc38.x86_64 tzdata-2023c-1.fc38.noarch unzip-6.0-60.fc38.x86_64 util-linux-2.38.1-4.fc38.x86_64 util-linux-core-2.38.1-4.fc38.x86_64 which-2.21-39.fc38.x86_64 xxhash-libs-0.8.1-4.fc38.x86_64 xz-5.4.1-1.fc38.x86_64 xz-libs-5.4.1-1.fc38.x86_64 zip-3.0-36.fc38.x86_64 zlib-1.2.13-3.fc38.x86_64 zstd-1.5.5-1.fc38.x86_64 Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: qt5-srpm-macros-5.15.10-1.fc38.noarch elfutils-debuginfod-client-0.189-2.fc38.x86_64 libpkgconf-1.8.0-6.fc38.x86_64 pyproject-srpm-macros-1.9.0-1.fc38.noarch pcre2-syntax-10.42-1.fc38.1.noarch efi-srpm-macros-5-7.fc38.noarch libcurl-8.0.1-2.fc38.x86_64 p11-kit-trust-0.24.1-6.fc38.x86_64 tzdata-2023c-1.fc38.noarch libcom_err-1.46.5-4.fc38.x86_64 tar-1.34-8.fc38.x86_64 rpm-build-libs-4.18.1-3.fc38.x86_64 libnghttp2-1.52.0-1.fc38.x86_64 alternatives-1.24-1.fc38.x86_64 libsemanage-3.5-2.fc38.x86_64 xz-5.4.1-1.fc38.x86_64 fonts-srpm-macros-2.0.5-11.fc38.noarch diffutils-3.10-1.fc38.x86_64 gpg-pubkey-eb10b464-6202d9c6 audit-libs-3.1.1-1.fc38.x86_64 libffi-3.4.4-2.fc38.x86_64 libpwquality-1.4.5-3.fc38.x86_64 libtirpc-1.3.3-1.rc1.fc38.x86_64 lua-srpm-macros-1-8.fc38.noarch sed-4.8-12.fc38.x86_64 which-2.21-39.fc38.x86_64 perl-srpm-macros-1-48.fc38.noarch rpm-libs-4.18.1-3.fc38.x86_64 readline-8.2-3.fc38.x86_64 pkgconf-m4-1.8.0-6.fc38.noarch bzip2-libs-1.0.8-13.fc38.x86_64 package-notes-srpm-macros-0.5-8.fc38.noarch cpio-2.13-14.fc38.x86_64 libdb-5.3.28-55.fc38.x86_64 libsmartcols-2.38.1-4.fc38.x86_64 shadow-utils-4.13-6.fc38.x86_64 jansson-2.13.1-6.fc38.x86_64 lua-libs-5.4.4-9.fc38.x86_64 fedora-release-common-38-36.noarch keyutils-libs-1.6.1-6.fc38.x86_64 go-srpm-macros-3.2.0-2.fc38.noarch gdb-minimal-13.2-2.fc38.x86_64 rpm-build-4.18.1-3.fc38.x86_64 pkgconf-1.8.0-6.fc38.x86_64 rpm-sequoia-1.4.1-1.fc38.x86_64 glibc-2.37-4.fc38.x86_64 libcap-ng-0.8.3-5.fc38.x86_64 debugedit-5.0-7.fc38.x86_64 crypto-policies-20230301-1.gita12f7b2.fc38.noarch sqlite-libs-3.40.1-2.fc38.x86_64 openssl-libs-3.0.9-1.fc38.x86_64 redhat-rpm-config-252-1.fc38.noarch zstd-1.5.5-1.fc38.x86_64 krb5-libs-1.20.1-8.fc38.x86_64 findutils-4.9.0-3.fc38.x86_64 util-linux-core-2.38.1-4.fc38.x86_64 libarchive-3.6.1-4.fc38.x86_64 publicsuffix-list-dafsa-20230614-1.fc38.noarch popt-1.19-2.fc38.x86_64 pcre2-10.42-1.fc38.1.x86_64 cyrus-sasl-lib-2.1.28-9.fc38.x86_64 cracklib-2.9.7-31.fc38.x86_64 libstdc++-13.1.1-4.fc38.x86_64 openldap-2.6.4-1.fc38.x86_64 fedora-release-38-36.noarch file-libs-5.44-3.fc38.x86_64 libacl-2.3.1-6.fc38.x86_64 ghc-srpm-macros-1.6.1-1.fc38.noarch libblkid-2.38.1-4.fc38.x86_64 ncurses-base-6.4-3.20230114.fc38.noarch libidn2-2.3.4-2.fc38.x86_64 elfutils-libelf-0.189-2.fc38.x86_64 grep-3.8-3.fc38.x86_64 libssh-0.10.5-1.fc38.x86_64 rust-srpm-macros-24-2.fc38.noarch ed-1.19-2.fc38.x86_64 libcap-2.48-6.fc38.x86_64 gawk-5.1.1-5.fc38.x86_64 elfutils-libs-0.189-2.fc38.x86_64 glibc-gconv-extra-2.37-4.fc38.x86_64 mpfr-4.1.1-3.fc38.x86_64 libsepol-3.5-1.fc38.x86_64 filesystem-3.18-3.fc38.x86_64 rpmautospec-rpm-macros-0.3.5-1.fc38.noarch libzstd-1.5.5-1.fc38.x86_64 gmp-6.2.1-4.fc38.x86_64 xz-libs-5.4.1-1.fc38.x86_64 libxcrypt-4.4.35-1.fc38.x86_64 file-5.44-3.fc38.x86_64 pam-libs-1.5.2-16.fc38.x86_64 libnsl2-2.0.0-5.fc38.x86_64 zlib-1.2.13-3.fc38.x86_64 glibc-common-2.37-4.fc38.x86_64 unzip-6.0-60.fc38.x86_64 xxhash-libs-0.8.1-4.fc38.x86_64 gdbm-libs-1.23-3.fc38.x86_64 fpc-srpm-macros-1.3-7.fc38.noarch lz4-libs-1.9.4-2.fc38.x86_64 gzip-1.12-3.fc38.x86_64 bash-5.2.15-3.fc38.x86_64 dwz-0.15-2.fc38.x86_64 setup-2.14.3-2.fc38.noarch coreutils-9.1-12.fc38.x86_64 ansible-srpm-macros-1-10.fc38.noarch libbrotli-1.0.9-11.fc38.x86_64 glibc-minimal-langpack-2.37-4.fc38.x86_64 libselinux-3.5-1.fc38.x86_64 libgcc-13.1.1-4.fc38.x86_64 authselect-libs-1.4.2-2.fc38.x86_64 bzip2-1.0.8-13.fc38.x86_64 pam-1.5.2-16.fc38.x86_64 libeconf-0.4.0-5.fc38.x86_64 fedora-release-identity-basic-38-36.noarch libutempter-1.2.1-8.fc38.x86_64 kernel-srpm-macros-1.0-19.fc38.noarch libmount-2.38.1-4.fc38.x86_64 libtasn1-4.19.0-2.fc38.x86_64 fedora-repos-38-1.noarch openblas-srpm-macros-2-13.fc38.noarch coreutils-common-9.1-12.fc38.x86_64 libpsl-0.21.2-2.fc38.x86_64 pkgconf-pkg-config-1.8.0-6.fc38.x86_64 libsigsegv-2.14-4.fc38.x86_64 libverto-0.3.2-5.fc38.x86_64 patch-2.7.6-19.fc38.x86_64 info-7.0.2-2.fc38.x86_64 authselect-1.4.2-2.fc38.x86_64 gnat-srpm-macros-6-2.fc38.noarch fedora-gpg-keys-38-1.noarch libssh-config-0.10.5-1.fc38.noarch rpm-4.18.1-3.fc38.x86_64 ncurses-libs-6.4-3.20230114.fc38.x86_64 systemd-libs-253.5-1.fc38.x86_64 libxml2-2.10.4-1.fc38.x86_64 ca-certificates-2023.2.60-2.fc38.noarch python-srpm-macros-3.11-10.fc38.noarch elfutils-0.189-2.fc38.x86_64 libevent-2.1.12-8.fc38.x86_64 libfdisk-2.38.1-4.fc38.x86_64 binutils-gold-2.39-9.fc38.x86_64 p11-kit-0.24.1-6.fc38.x86_64 libgomp-13.1.1-4.fc38.x86_64 libattr-2.5.1-6.fc38.x86_64 libunistring1.0-1.0-1.fc38.x86_64 curl-8.0.1-2.fc38.x86_64 libuuid-2.38.1-4.fc38.x86_64 zip-3.0-36.fc38.x86_64 elfutils-default-yama-scope-0.189-2.fc38.noarch basesystem-11-15.fc38.noarch ocaml-srpm-macros-7-3.fc38.noarch util-linux-2.38.1-4.fc38.x86_64 binutils-2.39-9.fc38.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1688342400 Wrote: /builddir/build/SRPMS/rdkit-2023.03.2-1.fc38.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-38-x86_64-1688587310.077043/root/var/log/dnf.rpm.log /var/lib/mock/fedora-38-x86_64-1688587310.077043/root/var/log/dnf.librepo.log /var/lib/mock/fedora-38-x86_64-1688587310.077043/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-_52kech9/rdkit/rdkit.spec) Config(child) 1 minutes 27 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running (timeout=18000): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/rdkit-2023.03.2-1.fc38.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1688587310.077043 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 4.1 starting (python version = 3.11.3, NVR = mock-4.1-1.fc38)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/results/rdkit-2023.03.2-1.fc38.src.rpm) Config(fedora-38-x86_64) Start: clean chroot Finish: clean chroot Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-38-x86_64-bootstrap-1688587310.077043/root. INFO: reusing tmpfs at /var/lib/mock/fedora-38-x86_64-bootstrap-1688587310.077043/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 4.1 INFO: Mock Version: 4.1 INFO: Package manager dnf detected and used (fallback) Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-38-x86_64-1688587310.077043/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 4.1 INFO: Mock Version: 4.1 INFO: Package manager dnf detected and used (direct choice) Start: dnf update No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 43 kB/s | 1.5 kB 00:00 fedora 321 kB/s | 24 kB 00:00 updates 265 kB/s | 22 kB 00:00 Dependencies resolved. Nothing to do. Complete! Finish: dnf update Finish: chroot init Start: build phase for rdkit-2023.03.2-1.fc38.src.rpm Start: build setup for rdkit-2023.03.2-1.fc38.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1688342400 Wrote: /builddir/build/SRPMS/rdkit-2023.03.2-1.fc38.src.rpm No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 57 kB/s | 1.5 kB 00:00 fedora 552 kB/s | 24 kB 00:00 updates 269 kB/s | 22 kB 00:00 Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing: bison x86_64 3.8.2-4.fc38 fedora 1.0 M boost-devel x86_64 1.78.0-11.fc38 fedora 13 M cairo-devel x86_64 1.17.8-4.fc38 updates 188 k catch2-devel x86_64 2.13.10-1.fc38 fedora 206 k chrpath x86_64 0.16-19.fc38 fedora 30 k cmake x86_64 3.26.4-4.fc38 updates 6.9 M comic-neue-fonts noarch 2.51-6.fc38 fedora 147 k eigen3-devel noarch 3.4.0-9.fc38 fedora 1.2 M flex x86_64 2.6.4-12.fc38 fedora 313 k gcc-c++ x86_64 13.1.1-4.fc38 updates 13 M inchi-devel x86_64 1.0.6-6.fc38 fedora 25 k junit noarch 1:4.13.1-9.fc38 fedora 346 k maeparser-devel x86_64 1.3.1-1.fc38 fedora 19 k make x86_64 1:4.4-3.fc38 fedora 580 k postgresql-server-devel x86_64 15.1-2.fc38 fedora 1.4 M python3-cairocffi noarch 1.3.0-7.fc38 fedora 168 k python3-devel x86_64 3.11.4-1.fc38 updates 269 k python3-numpy x86_64 1:1.24.3-1.fc38 updates 7.9 M python3-pandas x86_64 1.5.3-3.fc38 updates 7.4 M python3-pillow x86_64 9.4.0-2.fc38 fedora 922 k xorg-x11-fonts-Type1 noarch 7.5-35.fc38 fedora 505 k Installing dependencies: adwaita-cursor-theme noarch 44.0-1.fc38 fedora 633 k adwaita-icon-theme noarch 44.0-1.fc38 fedora 1.1 M annobin-docs noarch 12.14-1.fc38 updates 94 k annobin-plugin-gcc x86_64 12.14-1.fc38 updates 894 k at-spi2-atk x86_64 2.48.3-1.fc38 updates 85 k at-spi2-core x86_64 2.48.3-1.fc38 updates 372 k atk x86_64 2.48.3-1.fc38 updates 81 k avahi-libs x86_64 0.8-22.fc38 updates 66 k boost x86_64 1.78.0-11.fc38 fedora 14 k boost-atomic x86_64 1.78.0-11.fc38 fedora 20 k boost-chrono x86_64 1.78.0-11.fc38 fedora 26 k boost-container x86_64 1.78.0-11.fc38 fedora 40 k boost-context x86_64 1.78.0-11.fc38 fedora 17 k boost-contract x86_64 1.78.0-11.fc38 fedora 47 k boost-coroutine x86_64 1.78.0-11.fc38 fedora 22 k boost-date-time x86_64 1.78.0-11.fc38 fedora 15 k boost-fiber x86_64 1.78.0-11.fc38 fedora 42 k boost-filesystem x86_64 1.78.0-11.fc38 fedora 65 k boost-graph x86_64 1.78.0-11.fc38 fedora 151 k boost-iostreams x86_64 1.78.0-11.fc38 fedora 42 k boost-json x86_64 1.78.0-11.fc38 fedora 111 k boost-locale x86_64 1.78.0-11.fc38 fedora 220 k boost-log x86_64 1.78.0-11.fc38 fedora 491 k boost-math x86_64 1.78.0-11.fc38 fedora 199 k boost-nowide x86_64 1.78.0-11.fc38 fedora 21 k boost-numpy3 x86_64 1.78.0-11.fc38 fedora 29 k boost-program-options x86_64 1.78.0-11.fc38 fedora 108 k boost-python3 x86_64 1.78.0-11.fc38 fedora 96 k boost-random x86_64 1.78.0-11.fc38 fedora 25 k boost-regex x86_64 1.78.0-11.fc38 fedora 111 k boost-serialization x86_64 1.78.0-11.fc38 fedora 135 k boost-stacktrace x86_64 1.78.0-11.fc38 fedora 30 k boost-system x86_64 1.78.0-11.fc38 fedora 15 k boost-test x86_64 1.78.0-11.fc38 fedora 238 k boost-thread x86_64 1.78.0-11.fc38 fedora 59 k boost-timer x86_64 1.78.0-11.fc38 fedora 25 k boost-type_erasure x86_64 1.78.0-11.fc38 fedora 34 k boost-wave x86_64 1.78.0-11.fc38 fedora 223 k brotli x86_64 1.0.9-11.fc38 fedora 316 k brotli-devel x86_64 1.0.9-11.fc38 fedora 31 k bzip2-devel x86_64 1.0.8-13.fc38 fedora 214 k cairo x86_64 1.17.8-4.fc38 updates 704 k cairo-gobject x86_64 1.17.8-4.fc38 updates 18 k clang x86_64 16.0.5-1.fc38 updates 77 k clang-devel x86_64 16.0.5-1.fc38 updates 3.2 M clang-libs x86_64 16.0.5-1.fc38 updates 22 M clang-resource-filesystem x86_64 16.0.5-1.fc38 updates 13 k clang-tools-extra x86_64 16.0.5-1.fc38 updates 18 M cmake-data noarch 3.26.4-4.fc38 updates 2.2 M cmake-filesystem x86_64 3.26.4-4.fc38 updates 17 k cmake-rpm-macros noarch 3.26.4-4.fc38 updates 17 k colord-libs x86_64 1.4.6-4.fc38 updates 232 k comic-neue-fonts-common noarch 2.51-6.fc38 fedora 1.0 M copy-jdk-configs noarch 4.1-2.fc38 fedora 28 k cpp x86_64 13.1.1-4.fc38 updates 11 M crypto-policies-scripts noarch 20230301-1.gita12f7b2.fc38 fedora 116 k cups-libs x86_64 1:2.4.6-1.fc38 updates 266 k dbus x86_64 1:1.14.8-1.fc38 updates 8.0 k dbus-broker x86_64 33-1.fc38 fedora 173 k dbus-common noarch 1:1.14.8-1.fc38 updates 15 k dbus-libs x86_64 1:1.14.8-1.fc38 updates 156 k emacs-filesystem noarch 1:28.2-7.fc38 updates 7.9 k expat x86_64 2.5.0-2.fc38 fedora 110 k flexiblas x86_64 3.3.1-3.fc38 updates 33 k flexiblas-netlib x86_64 3.3.1-3.fc38 updates 3.1 M flexiblas-openblas-openmp x86_64 3.3.1-3.fc38 updates 17 k fontconfig x86_64 2.14.2-1.fc38 fedora 295 k fontconfig-devel x86_64 2.14.2-1.fc38 fedora 164 k fonts-filesystem noarch 1:2.0.5-11.fc38 fedora 8.1 k freetype x86_64 2.13.0-2.fc38 fedora 414 k freetype-devel x86_64 2.13.0-2.fc38 fedora 945 k fribidi x86_64 1.0.12-3.fc38 fedora 89 k gc x86_64 8.2.2-3.fc38 fedora 110 k gcc x86_64 13.1.1-4.fc38 updates 34 M gcc-plugin-annobin x86_64 13.1.1-4.fc38 updates 45 k gdk-pixbuf2 x86_64 2.42.10-2.fc38 fedora 485 k gdk-pixbuf2-modules x86_64 2.42.10-2.fc38 fedora 85 k gettext x86_64 0.21.1-2.fc38 fedora 1.0 M gettext-envsubst x86_64 0.21.1-2.fc38 fedora 36 k gettext-libs x86_64 0.21.1-2.fc38 fedora 320 k gettext-runtime x86_64 0.21.1-2.fc38 fedora 117 k glib2 x86_64 2.76.3-1.fc38 updates 2.8 M glib2-devel x86_64 2.76.3-1.fc38 updates 587 k glibc-devel x86_64 2.37-4.fc38 updates 52 k glibc-headers-x86 noarch 2.37-4.fc38 updates 532 k gnutls x86_64 3.8.0-2.fc38 fedora 1.1 M google-noto-fonts-common noarch 20230201-1.fc38 fedora 16 k google-noto-sans-vf-fonts noarch 20230201-1.fc38 fedora 580 k graphite2 x86_64 1.3.14-11.fc38 fedora 95 k graphite2-devel x86_64 1.3.14-11.fc38 fedora 20 k gtk-update-icon-cache x86_64 3.24.38-1.fc38 updates 34 k gtk3 x86_64 3.24.38-1.fc38 updates 4.8 M guile22 x86_64 2.2.7-7.fc38 fedora 6.5 M hamcrest noarch 2.2-9.fc38 fedora 120 k harfbuzz x86_64 7.1.0-1.fc38 fedora 889 k harfbuzz-devel x86_64 7.1.0-1.fc38 fedora 445 k harfbuzz-icu x86_64 7.1.0-1.fc38 fedora 16 k hicolor-icon-theme noarch 0.17-15.fc38 fedora 66 k inchi-libs x86_64 1.0.6-6.fc38 fedora 684 k java-1.8.0-openjdk-headless x86_64 1:1.8.0.362.b09-2.fc38 fedora 33 M javapackages-filesystem noarch 6.1.0-7.fc38 fedora 13 k jbigkit-libs x86_64 2.1-25.fc38 fedora 53 k json-glib x86_64 1.6.6-4.fc38 fedora 162 k jsoncpp x86_64 1.9.5-4.fc38 fedora 97 k kernel-headers x86_64 6.3.3-200.fc38 updates 1.5 M keyutils-libs-devel x86_64 1.6.1-6.fc38 fedora 58 k krb5-devel x86_64 1.20.1-8.fc38 fedora 144 k langpacks-core-font-en noarch 3.0-32.fc38 updates 9.6 k lcms2 x86_64 2.15-1.fc38 fedora 178 k libX11 x86_64 1.8.6-1.fc38 updates 649 k libX11-common noarch 1.8.6-1.fc38 updates 175 k libX11-devel x86_64 1.8.6-1.fc38 updates 1.0 M libX11-xcb x86_64 1.8.6-1.fc38 updates 11 k libXau x86_64 1.0.11-2.fc38 fedora 32 k libXau-devel x86_64 1.0.11-2.fc38 fedora 14 k libXcomposite x86_64 0.4.5-9.fc38 fedora 23 k libXcursor x86_64 1.2.1-3.fc38 fedora 30 k libXdamage x86_64 1.1.5-9.fc38 fedora 22 k libXext x86_64 1.3.5-2.fc38 fedora 39 k libXext-devel x86_64 1.3.5-2.fc38 fedora 85 k libXfixes x86_64 6.0.0-5.fc38 fedora 19 k libXft x86_64 2.3.8-2.fc38 updates 72 k libXi x86_64 1.8.1-1.fc38 updates 40 k libXinerama x86_64 1.1.5-2.fc38 fedora 14 k libXrandr x86_64 1.5.2-10.fc38 fedora 27 k libXrender x86_64 0.9.11-2.fc38 fedora 27 k libXrender-devel x86_64 0.9.11-2.fc38 fedora 19 k libXtst x86_64 1.2.4-2.fc38 fedora 20 k libb2 x86_64 0.98.1-8.fc38 fedora 25 k libblkid-devel x86_64 2.38.1-4.fc38 fedora 16 k libcloudproviders x86_64 0.3.1-7.fc38 fedora 44 k libcom_err-devel x86_64 1.46.5-4.fc38 fedora 15 k libdatrie x86_64 0.2.13-5.fc38 fedora 32 k libedit x86_64 3.1-45.20221030cvs.fc38 fedora 107 k libedit-devel x86_64 3.1-45.20221030cvs.fc38 fedora 41 k libepoxy x86_64 1.5.10-3.fc38 fedora 237 k libffi-devel x86_64 3.4.4-2.fc38 fedora 29 k libfontenc x86_64 1.1.6-2.fc38 fedora 32 k libgfortran x86_64 13.1.1-4.fc38 updates 897 k libgusb x86_64 0.4.5-1.fc38 fedora 63 k libicu x86_64 72.1-2.fc38 fedora 10 M libicu-devel x86_64 72.1-2.fc38 fedora 918 k libimagequant x86_64 2.17.0-4.fc38 fedora 63 k libjpeg-turbo x86_64 2.1.4-2.fc38 fedora 183 k libkadm5 x86_64 1.20.1-8.fc38 fedora 79 k libmount-devel x86_64 2.38.1-4.fc38 fedora 18 k libmpc x86_64 1.3.1-2.fc38 fedora 70 k libpng x86_64 2:1.6.37-14.fc38 fedora 120 k libpng-devel x86_64 2:1.6.37-14.fc38 fedora 291 k libquadmath x86_64 13.1.1-4.fc38 updates 192 k libquadmath-devel x86_64 13.1.1-4.fc38 updates 34 k libraqm x86_64 0.8.0-4.fc38 fedora 20 k libselinux-devel x86_64 3.5-1.fc38 fedora 151 k libsepol-devel x86_64 3.5-1.fc38 fedora 49 k libsoup3 x86_64 3.4.2-2.fc38 updates 388 k libstdc++-devel x86_64 13.1.1-4.fc38 updates 2.6 M libstemmer x86_64 2.2.0-5.fc38 fedora 168 k libthai x86_64 0.1.29-4.fc38 fedora 213 k libtiff x86_64 4.4.0-5.fc38 fedora 197 k libtool-ltdl x86_64 2.4.7-6.fc38 fedora 37 k libtracker-sparql x86_64 3.5.3-1.fc38 updates 384 k libunistring x86_64 1.1-3.fc38 fedora 545 k libusb1 x86_64 1.0.26-2.fc38 fedora 74 k libuv x86_64 1:1.44.2-3.fc38 fedora 152 k libverto-devel x86_64 0.3.2-5.fc38 fedora 14 k libwayland-client x86_64 1.22.0-1.fc38 updates 34 k libwayland-cursor x86_64 1.22.0-1.fc38 updates 19 k libwayland-egl x86_64 1.22.0-1.fc38 updates 13 k libwebp x86_64 1.3.0-2.fc38 fedora 282 k libxcb x86_64 1.13.1-11.fc38 fedora 231 k libxcb-devel x86_64 1.13.1-11.fc38 fedora 1.4 M libxcrypt-devel x86_64 4.4.35-1.fc38 updates 30 k libxkbcommon x86_64 1.5.0-2.fc38 fedora 140 k libxml2-devel x86_64 2.10.4-1.fc38 updates 531 k lksctp-tools x86_64 1.0.19-3.fc38 fedora 92 k llvm x86_64 16.0.5-1.fc38 updates 24 M llvm-devel x86_64 16.0.5-1.fc38 updates 3.8 M llvm-libs x86_64 16.0.5-1.fc38 updates 27 M llvm-static x86_64 16.0.5-1.fc38 updates 34 M llvm-test x86_64 16.0.5-1.fc38 updates 622 k lua x86_64 5.4.4-9.fc38 fedora 190 k lua-posix x86_64 35.1-5.fc38 fedora 138 k m4 x86_64 1.4.19-5.fc38 fedora 303 k maeparser x86_64 1.3.1-1.fc38 fedora 109 k mkfontscale x86_64 1.2.2-3.fc38 fedora 32 k mpdecimal x86_64 2.5.1-6.fc38 fedora 89 k ncurses-c++-libs x86_64 6.4-3.20230114.fc38 fedora 37 k ncurses-devel x86_64 6.4-3.20230114.fc38 fedora 549 k nettle x86_64 3.8-3.fc38 fedora 412 k nspr x86_64 4.35.0-7.fc38 updates 136 k nss x86_64 3.90.0-1.fc38 updates 693 k nss-softokn x86_64 3.90.0-1.fc38 updates 1.0 M nss-softokn-freebl x86_64 3.90.0-1.fc38 updates 321 k nss-sysinit x86_64 3.90.0-1.fc38 updates 18 k nss-util x86_64 3.90.0-1.fc38 updates 86 k openblas x86_64 0.3.21-4.fc38 fedora 35 k openblas-openmp x86_64 0.3.21-4.fc38 fedora 5.1 M openjpeg2 x86_64 2.5.0-3.fc38 fedora 178 k openssl-devel x86_64 1:3.0.9-1.fc38 updates 2.6 M pango x86_64 1.50.14-1.fc38 fedora 342 k pcre2-devel x86_64 10.42-1.fc38.1 fedora 506 k pcre2-utf16 x86_64 10.42-1.fc38.1 fedora 214 k pcre2-utf32 x86_64 10.42-1.fc38.1 fedora 201 k pixman x86_64 0.42.2-1.fc38 fedora 285 k pixman-devel x86_64 0.42.2-1.fc38 fedora 17 k postgresql-private-devel x86_64 15.1-2.fc38 fedora 64 k postgresql-private-libs x86_64 15.1-2.fc38 fedora 143 k pyproject-rpm-macros noarch 1.9.0-1.fc38 updates 42 k python-pip-wheel noarch 22.3.1-2.fc38 fedora 1.4 M python-rpm-macros noarch 3.11-10.fc38 fedora 20 k python-setuptools-wheel noarch 65.5.1-2.fc38 fedora 715 k python3 x86_64 3.11.4-1.fc38 updates 28 k python3-Bottleneck x86_64 1.3.7-1.fc38 updates 181 k python3-cffi x86_64 1.15.1-4.fc38 fedora 311 k python3-dateutil noarch 1:2.8.2-5.fc38 fedora 360 k python3-libs x86_64 3.11.4-1.fc38 updates 9.6 M python3-numexpr x86_64 2.8.4-1.fc38 fedora 168 k python3-numpy-f2py x86_64 1:1.24.3-1.fc38 updates 499 k python3-olefile noarch 0.46-19.fc38 fedora 67 k python3-packaging noarch 23.0-1.fc38 fedora 106 k python3-ply noarch 3.11-18.fc38 fedora 139 k python3-pycparser noarch 2.20-9.fc38 fedora 156 k python3-pytz noarch 2023.3-1.fc38 fedora 65 k python3-rpm-generators noarch 14-4.fc38 updates 30 k python3-rpm-macros noarch 3.11-10.fc38 fedora 15 k python3-scipy x86_64 1.10.1-1.fc38 updates 21 M python3-six noarch 1.16.0-9.fc38 fedora 42 k python3-xcffib noarch 1.2.0-1.fc38 fedora 271 k rhash x86_64 1.4.3-2.fc38 fedora 194 k shared-mime-info x86_64 2.2-3.fc38 fedora 381 k sysprof-capture-devel x86_64 3.48.0-1.fc38 fedora 58 k ttmkfdir x86_64 3.0.9-67.fc38 fedora 54 k tzdata-java noarch 2023c-1.fc38 fedora 208 k vim-filesystem noarch 2:9.0.1671-1.fc38 updates 18 k xkeyboard-config noarch 2.38-1.fc38 fedora 963 k xml-common noarch 0.6.3-60.fc38 fedora 31 k xorg-x11-proto-devel noarch 2022.2-3.fc38 fedora 299 k xprop x86_64 1.2.5-3.fc38 fedora 35 k xz-devel x86_64 5.4.1-1.fc38 fedora 65 k zlib-devel x86_64 1.2.13-3.fc38 fedora 45 k Transaction Summary ================================================================================ Install 261 Packages Total download size: 382 M Installed size: 1.7 G Downloading Packages: (1/261): adwaita-cursor-theme-44.0-1.fc38.noarc 3.8 MB/s | 633 kB 00:00 (2/261): boost-1.78.0-11.fc38.x86_64.rpm 412 kB/s | 14 kB 00:00 (3/261): bison-3.8.2-4.fc38.x86_64.rpm 4.5 MB/s | 1.0 MB 00:00 (4/261): boost-atomic-1.78.0-11.fc38.x86_64.rpm 801 kB/s | 20 kB 00:00 (5/261): boost-container-1.78.0-11.fc38.x86_64. 1.5 MB/s | 40 kB 00:00 (6/261): boost-chrono-1.78.0-11.fc38.x86_64.rpm 799 kB/s | 26 kB 00:00 (7/261): boost-context-1.78.0-11.fc38.x86_64.rp 603 kB/s | 17 kB 00:00 (8/261): adwaita-icon-theme-44.0-1.fc38.noarch. 3.7 MB/s | 1.1 MB 00:00 (9/261): boost-contract-1.78.0-11.fc38.x86_64.r 1.1 MB/s | 47 kB 00:00 (10/261): boost-coroutine-1.78.0-11.fc38.x86_64 722 kB/s | 22 kB 00:00 (11/261): boost-date-time-1.78.0-11.fc38.x86_64 660 kB/s | 15 kB 00:00 (12/261): boost-fiber-1.78.0-11.fc38.x86_64.rpm 1.3 MB/s | 42 kB 00:00 (13/261): boost-filesystem-1.78.0-11.fc38.x86_6 1.8 MB/s | 65 kB 00:00 (14/261): boost-graph-1.78.0-11.fc38.x86_64.rpm 4.8 MB/s | 151 kB 00:00 (15/261): boost-json-1.78.0-11.fc38.x86_64.rpm 3.4 MB/s | 111 kB 00:00 (16/261): boost-iostreams-1.78.0-11.fc38.x86_64 799 kB/s | 42 kB 00:00 (17/261): boost-log-1.78.0-11.fc38.x86_64.rpm 14 MB/s | 491 kB 00:00 (18/261): boost-locale-1.78.0-11.fc38.x86_64.rp 5.8 MB/s | 220 kB 00:00 (19/261): boost-math-1.78.0-11.fc38.x86_64.rpm 5.5 MB/s | 199 kB 00:00 (20/261): boost-nowide-1.78.0-11.fc38.x86_64.rp 422 kB/s | 21 kB 00:00 (21/261): boost-numpy3-1.78.0-11.fc38.x86_64.rp 1.1 MB/s | 29 kB 00:00 (22/261): boost-program-options-1.78.0-11.fc38. 4.0 MB/s | 108 kB 00:00 (23/261): boost-python3-1.78.0-11.fc38.x86_64.r 2.6 MB/s | 96 kB 00:00 (24/261): boost-random-1.78.0-11.fc38.x86_64.rp 603 kB/s | 25 kB 00:00 (25/261): boost-devel-1.78.0-11.fc38.x86_64.rpm 49 MB/s | 13 MB 00:00 (26/261): boost-regex-1.78.0-11.fc38.x86_64.rpm 2.8 MB/s | 111 kB 00:00 (27/261): boost-serialization-1.78.0-11.fc38.x8 4.8 MB/s | 135 kB 00:00 (28/261): boost-system-1.78.0-11.fc38.x86_64.rp 450 kB/s | 15 kB 00:00 (29/261): boost-stacktrace-1.78.0-11.fc38.x86_6 753 kB/s | 30 kB 00:00 (30/261): boost-test-1.78.0-11.fc38.x86_64.rpm 6.9 MB/s | 238 kB 00:00 (31/261): boost-timer-1.78.0-11.fc38.x86_64.rpm 895 kB/s | 25 kB 00:00 (32/261): boost-thread-1.78.0-11.fc38.x86_64.rp 1.6 MB/s | 59 kB 00:00 (33/261): boost-type_erasure-1.78.0-11.fc38.x86 717 kB/s | 34 kB 00:00 (34/261): brotli-1.0.9-11.fc38.x86_64.rpm 7.1 MB/s | 316 kB 00:00 (35/261): boost-wave-1.78.0-11.fc38.x86_64.rpm 4.4 MB/s | 223 kB 00:00 (36/261): brotli-devel-1.0.9-11.fc38.x86_64.rpm 1.0 MB/s | 31 kB 00:00 (37/261): bzip2-devel-1.0.8-13.fc38.x86_64.rpm 7.5 MB/s | 214 kB 00:00 (38/261): catch2-devel-2.13.10-1.fc38.x86_64.rp 6.6 MB/s | 206 kB 00:00 (39/261): chrpath-0.16-19.fc38.x86_64.rpm 1.1 MB/s | 30 kB 00:00 (40/261): comic-neue-fonts-2.51-6.fc38.noarch.r 4.9 MB/s | 147 kB 00:00 (41/261): comic-neue-fonts-common-2.51-6.fc38.n 28 MB/s | 1.0 MB 00:00 (42/261): copy-jdk-configs-4.1-2.fc38.noarch.rp 555 kB/s | 28 kB 00:00 (43/261): crypto-policies-scripts-20230301-1.gi 3.1 MB/s | 116 kB 00:00 (44/261): dbus-broker-33-1.fc38.x86_64.rpm 5.7 MB/s | 173 kB 00:00 (45/261): expat-2.5.0-2.fc38.x86_64.rpm 4.2 MB/s | 110 kB 00:00 (46/261): flex-2.6.4-12.fc38.x86_64.rpm 8.3 MB/s | 313 kB 00:00 (47/261): eigen3-devel-3.4.0-9.fc38.noarch.rpm 21 MB/s | 1.2 MB 00:00 (48/261): fontconfig-2.14.2-1.fc38.x86_64.rpm 8.5 MB/s | 295 kB 00:00 (49/261): fontconfig-devel-2.14.2-1.fc38.x86_64 5.2 MB/s | 164 kB 00:00 (50/261): fonts-filesystem-2.0.5-11.fc38.noarch 253 kB/s | 8.1 kB 00:00 (51/261): freetype-2.13.0-2.fc38.x86_64.rpm 12 MB/s | 414 kB 00:00 (52/261): freetype-devel-2.13.0-2.fc38.x86_64.r 23 MB/s | 945 kB 00:00 (53/261): gc-8.2.2-3.fc38.x86_64.rpm 3.8 MB/s | 110 kB 00:00 (54/261): fribidi-1.0.12-3.fc38.x86_64.rpm 1.6 MB/s | 89 kB 00:00 (55/261): gdk-pixbuf2-modules-2.42.10-2.fc38.x8 3.7 MB/s | 85 kB 00:00 (56/261): gdk-pixbuf2-2.42.10-2.fc38.x86_64.rpm 13 MB/s | 485 kB 00:00 (57/261): gettext-libs-0.21.1-2.fc38.x86_64.rpm 17 MB/s | 320 kB 00:00 (58/261): gettext-envsubst-0.21.1-2.fc38.x86_64 1.3 MB/s | 36 kB 00:00 (59/261): gettext-0.21.1-2.fc38.x86_64.rpm 23 MB/s | 1.0 MB 00:00 (60/261): gettext-runtime-0.21.1-2.fc38.x86_64. 6.9 MB/s | 117 kB 00:00 (61/261): google-noto-fonts-common-20230201-1.f 590 kB/s | 16 kB 00:00 (62/261): google-noto-sans-vf-fonts-20230201-1. 13 MB/s | 580 kB 00:00 (63/261): gnutls-3.8.0-2.fc38.x86_64.rpm 18 MB/s | 1.1 MB 00:00 (64/261): graphite2-1.3.14-11.fc38.x86_64.rpm 3.0 MB/s | 95 kB 00:00 (65/261): hamcrest-2.2-9.fc38.noarch.rpm 4.2 MB/s | 120 kB 00:00 (66/261): graphite2-devel-1.3.14-11.fc38.x86_64 323 kB/s | 20 kB 00:00 (67/261): harfbuzz-7.1.0-1.fc38.x86_64.rpm 17 MB/s | 889 kB 00:00 (68/261): harfbuzz-devel-7.1.0-1.fc38.x86_64.rp 11 MB/s | 445 kB 00:00 (69/261): hicolor-icon-theme-0.17-15.fc38.noarc 2.3 MB/s | 66 kB 00:00 (70/261): guile22-2.2.7-7.fc38.x86_64.rpm 49 MB/s | 6.5 MB 00:00 (71/261): harfbuzz-icu-7.1.0-1.fc38.x86_64.rpm 330 kB/s | 16 kB 00:00 (72/261): inchi-devel-1.0.6-6.fc38.x86_64.rpm 579 kB/s | 25 kB 00:00 (73/261): inchi-libs-1.0.6-6.fc38.x86_64.rpm 15 MB/s | 684 kB 00:00 (74/261): jbigkit-libs-2.1-25.fc38.x86_64.rpm 1.9 MB/s | 53 kB 00:00 (75/261): javapackages-filesystem-6.1.0-7.fc38. 194 kB/s | 13 kB 00:00 (76/261): json-glib-1.6.6-4.fc38.x86_64.rpm 5.1 MB/s | 162 kB 00:00 (77/261): jsoncpp-1.9.5-4.fc38.x86_64.rpm 3.1 MB/s | 97 kB 00:00 (78/261): junit-4.13.1-9.fc38.noarch.rpm 11 MB/s | 346 kB 00:00 (79/261): krb5-devel-1.20.1-8.fc38.x86_64.rpm 3.9 MB/s | 144 kB 00:00 (80/261): keyutils-libs-devel-1.6.1-6.fc38.x86_ 1.4 MB/s | 58 kB 00:00 (81/261): libXau-1.0.11-2.fc38.x86_64.rpm 1.2 MB/s | 32 kB 00:00 (82/261): lcms2-2.15-1.fc38.x86_64.rpm 3.9 MB/s | 178 kB 00:00 (83/261): libXau-devel-1.0.11-2.fc38.x86_64.rpm 368 kB/s | 14 kB 00:00 (84/261): libXcomposite-0.4.5-9.fc38.x86_64.rpm 742 kB/s | 23 kB 00:00 (85/261): libXcursor-1.2.1-3.fc38.x86_64.rpm 1.2 MB/s | 30 kB 00:00 (86/261): libXdamage-1.1.5-9.fc38.x86_64.rpm 749 kB/s | 22 kB 00:00 (87/261): libXext-1.3.5-2.fc38.x86_64.rpm 1.2 MB/s | 39 kB 00:00 (88/261): libXext-devel-1.3.5-2.fc38.x86_64.rpm 4.0 MB/s | 85 kB 00:00 (89/261): libXfixes-6.0.0-5.fc38.x86_64.rpm 649 kB/s | 19 kB 00:00 (90/261): libXinerama-1.1.5-2.fc38.x86_64.rpm 430 kB/s | 14 kB 00:00 (91/261): libXrandr-1.5.2-10.fc38.x86_64.rpm 549 kB/s | 27 kB 00:00 (92/261): java-1.8.0-openjdk-headless-1.8.0.362 80 MB/s | 33 MB 00:00 (93/261): libXrender-0.9.11-2.fc38.x86_64.rpm 323 kB/s | 27 kB 00:00 (94/261): libXrender-devel-0.9.11-2.fc38.x86_64 459 kB/s | 19 kB 00:00 (95/261): libXtst-1.2.4-2.fc38.x86_64.rpm 867 kB/s | 20 kB 00:00 (96/261): libblkid-devel-2.38.1-4.fc38.x86_64.r 708 kB/s | 16 kB 00:00 (97/261): libb2-0.98.1-8.fc38.x86_64.rpm 1.0 MB/s | 25 kB 00:00 (98/261): libcom_err-devel-1.46.5-4.fc38.x86_64 588 kB/s | 15 kB 00:00 (99/261): libcloudproviders-0.3.1-7.fc38.x86_64 1.2 MB/s | 44 kB 00:00 (100/261): libedit-3.1-45.20221030cvs.fc38.x86_ 6.6 MB/s | 107 kB 00:00 (101/261): libdatrie-0.2.13-5.fc38.x86_64.rpm 521 kB/s | 32 kB 00:00 (102/261): libedit-devel-3.1-45.20221030cvs.fc3 1.3 MB/s | 41 kB 00:00 (103/261): libepoxy-1.5.10-3.fc38.x86_64.rpm 5.4 MB/s | 237 kB 00:00 (104/261): libffi-devel-3.4.4-2.fc38.x86_64.rpm 944 kB/s | 29 kB 00:00 (105/261): libfontenc-1.1.6-2.fc38.x86_64.rpm 850 kB/s | 32 kB 00:00 (106/261): libgusb-0.4.5-1.fc38.x86_64.rpm 2.4 MB/s | 63 kB 00:00 (107/261): libimagequant-2.17.0-4.fc38.x86_64.r 2.3 MB/s | 63 kB 00:00 (108/261): libicu-devel-72.1-2.fc38.x86_64.rpm 22 MB/s | 918 kB 00:00 (109/261): libkadm5-1.20.1-8.fc38.x86_64.rpm 3.2 MB/s | 79 kB 00:00 (110/261): libjpeg-turbo-2.1.4-2.fc38.x86_64.rp 4.9 MB/s | 183 kB 00:00 (111/261): libmpc-1.3.1-2.fc38.x86_64.rpm 2.4 MB/s | 70 kB 00:00 (112/261): 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Running transaction test Transaction test succeeded. Running transaction Running scriptlet: copy-jdk-configs-4.1-2.fc38.noarch 1/1 Running scriptlet: java-1.8.0-openjdk-headless-1:1.8.0.362.b09-2.fc38.x 1/1 Preparing : 1/1 Installing : boost-system-1.78.0-11.fc38.x86_64 1/261 Installing : cmake-filesystem-3.26.4-4.fc38.x86_64 2/261 Installing : libicu-72.1-2.fc38.x86_64 3/261 Installing : boost-chrono-1.78.0-11.fc38.x86_64 4/261 Installing : boost-thread-1.78.0-11.fc38.x86_64 5/261 Installing : nspr-4.35.0-7.fc38.x86_64 6/261 Installing : zlib-devel-1.2.13-3.fc38.x86_64 7/261 Installing : nss-util-3.90.0-1.fc38.x86_64 8/261 Installing : xorg-x11-proto-devel-2022.2-3.fc38.noarch 9/261 Installing : libpng-2:1.6.37-14.fc38.x86_64 10/261 Installing : boost-regex-1.78.0-11.fc38.x86_64 11/261 Installing : libicu-devel-72.1-2.fc38.x86_64 12/261 Installing : libgfortran-13.1.1-4.fc38.x86_64 13/261 Installing : dbus-libs-1:1.14.8-1.fc38.x86_64 14/261 Installing : python-rpm-macros-3.11-10.fc38.noarch 15/261 Installing : 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junit-1:4.13.1-9.fc38.noarch 79/261 Verifying : keyutils-libs-devel-1.6.1-6.fc38.x86_64 80/261 Verifying : krb5-devel-1.20.1-8.fc38.x86_64 81/261 Verifying : lcms2-2.15-1.fc38.x86_64 82/261 Verifying : libXau-1.0.11-2.fc38.x86_64 83/261 Verifying : libXau-devel-1.0.11-2.fc38.x86_64 84/261 Verifying : libXcomposite-0.4.5-9.fc38.x86_64 85/261 Verifying : libXcursor-1.2.1-3.fc38.x86_64 86/261 Verifying : libXdamage-1.1.5-9.fc38.x86_64 87/261 Verifying : libXext-1.3.5-2.fc38.x86_64 88/261 Verifying : libXext-devel-1.3.5-2.fc38.x86_64 89/261 Verifying : libXfixes-6.0.0-5.fc38.x86_64 90/261 Verifying : libXinerama-1.1.5-2.fc38.x86_64 91/261 Verifying : libXrandr-1.5.2-10.fc38.x86_64 92/261 Verifying : libXrender-0.9.11-2.fc38.x86_64 93/261 Verifying : libXrender-devel-0.9.11-2.fc38.x86_64 94/261 Verifying : libXtst-1.2.4-2.fc38.x86_64 95/261 Verifying : libb2-0.98.1-8.fc38.x86_64 96/261 Verifying : libblkid-devel-2.38.1-4.fc38.x86_64 97/261 Verifying : libcloudproviders-0.3.1-7.fc38.x86_64 98/261 Verifying : libcom_err-devel-1.46.5-4.fc38.x86_64 99/261 Verifying : libdatrie-0.2.13-5.fc38.x86_64 100/261 Verifying : libedit-3.1-45.20221030cvs.fc38.x86_64 101/261 Verifying : libedit-devel-3.1-45.20221030cvs.fc38.x86_64 102/261 Verifying : libepoxy-1.5.10-3.fc38.x86_64 103/261 Verifying : libffi-devel-3.4.4-2.fc38.x86_64 104/261 Verifying : libfontenc-1.1.6-2.fc38.x86_64 105/261 Verifying : libgusb-0.4.5-1.fc38.x86_64 106/261 Verifying : libicu-72.1-2.fc38.x86_64 107/261 Verifying : libicu-devel-72.1-2.fc38.x86_64 108/261 Verifying : libimagequant-2.17.0-4.fc38.x86_64 109/261 Verifying : libjpeg-turbo-2.1.4-2.fc38.x86_64 110/261 Verifying : libkadm5-1.20.1-8.fc38.x86_64 111/261 Verifying : libmount-devel-2.38.1-4.fc38.x86_64 112/261 Verifying : libmpc-1.3.1-2.fc38.x86_64 113/261 Verifying : libpng-2:1.6.37-14.fc38.x86_64 114/261 Verifying : libpng-devel-2:1.6.37-14.fc38.x86_64 115/261 Verifying : libraqm-0.8.0-4.fc38.x86_64 116/261 Verifying : libselinux-devel-3.5-1.fc38.x86_64 117/261 Verifying : libsepol-devel-3.5-1.fc38.x86_64 118/261 Verifying : libstemmer-2.2.0-5.fc38.x86_64 119/261 Verifying : libthai-0.1.29-4.fc38.x86_64 120/261 Verifying : libtiff-4.4.0-5.fc38.x86_64 121/261 Verifying : libtool-ltdl-2.4.7-6.fc38.x86_64 122/261 Verifying : libunistring-1.1-3.fc38.x86_64 123/261 Verifying : libusb1-1.0.26-2.fc38.x86_64 124/261 Verifying : libuv-1:1.44.2-3.fc38.x86_64 125/261 Verifying : libverto-devel-0.3.2-5.fc38.x86_64 126/261 Verifying : libwebp-1.3.0-2.fc38.x86_64 127/261 Verifying : libxcb-1.13.1-11.fc38.x86_64 128/261 Verifying : libxcb-devel-1.13.1-11.fc38.x86_64 129/261 Verifying : libxkbcommon-1.5.0-2.fc38.x86_64 130/261 Verifying : lksctp-tools-1.0.19-3.fc38.x86_64 131/261 Verifying : lua-5.4.4-9.fc38.x86_64 132/261 Verifying : lua-posix-35.1-5.fc38.x86_64 133/261 Verifying : m4-1.4.19-5.fc38.x86_64 134/261 Verifying : maeparser-1.3.1-1.fc38.x86_64 135/261 Verifying : maeparser-devel-1.3.1-1.fc38.x86_64 136/261 Verifying : make-1:4.4-3.fc38.x86_64 137/261 Verifying : mkfontscale-1.2.2-3.fc38.x86_64 138/261 Verifying : mpdecimal-2.5.1-6.fc38.x86_64 139/261 Verifying : ncurses-c++-libs-6.4-3.20230114.fc38.x86_64 140/261 Verifying : ncurses-devel-6.4-3.20230114.fc38.x86_64 141/261 Verifying : nettle-3.8-3.fc38.x86_64 142/261 Verifying : openblas-0.3.21-4.fc38.x86_64 143/261 Verifying : openblas-openmp-0.3.21-4.fc38.x86_64 144/261 Verifying : openjpeg2-2.5.0-3.fc38.x86_64 145/261 Verifying : pango-1.50.14-1.fc38.x86_64 146/261 Verifying : pcre2-devel-10.42-1.fc38.1.x86_64 147/261 Verifying : pcre2-utf16-10.42-1.fc38.1.x86_64 148/261 Verifying : pcre2-utf32-10.42-1.fc38.1.x86_64 149/261 Verifying : pixman-0.42.2-1.fc38.x86_64 150/261 Verifying : pixman-devel-0.42.2-1.fc38.x86_64 151/261 Verifying : postgresql-private-devel-15.1-2.fc38.x86_64 152/261 Verifying : postgresql-private-libs-15.1-2.fc38.x86_64 153/261 Verifying : postgresql-server-devel-15.1-2.fc38.x86_64 154/261 Verifying : python-pip-wheel-22.3.1-2.fc38.noarch 155/261 Verifying : python-rpm-macros-3.11-10.fc38.noarch 156/261 Verifying : python-setuptools-wheel-65.5.1-2.fc38.noarch 157/261 Verifying : python3-cairocffi-1.3.0-7.fc38.noarch 158/261 Verifying : python3-cffi-1.15.1-4.fc38.x86_64 159/261 Verifying : python3-dateutil-1:2.8.2-5.fc38.noarch 160/261 Verifying : python3-numexpr-2.8.4-1.fc38.x86_64 161/261 Verifying : python3-olefile-0.46-19.fc38.noarch 162/261 Verifying : python3-packaging-23.0-1.fc38.noarch 163/261 Verifying : python3-pillow-9.4.0-2.fc38.x86_64 164/261 Verifying : python3-ply-3.11-18.fc38.noarch 165/261 Verifying : python3-pycparser-2.20-9.fc38.noarch 166/261 Verifying : python3-pytz-2023.3-1.fc38.noarch 167/261 Verifying : python3-rpm-macros-3.11-10.fc38.noarch 168/261 Verifying : python3-six-1.16.0-9.fc38.noarch 169/261 Verifying : python3-xcffib-1.2.0-1.fc38.noarch 170/261 Verifying : rhash-1.4.3-2.fc38.x86_64 171/261 Verifying : shared-mime-info-2.2-3.fc38.x86_64 172/261 Verifying : sysprof-capture-devel-3.48.0-1.fc38.x86_64 173/261 Verifying : ttmkfdir-3.0.9-67.fc38.x86_64 174/261 Verifying : tzdata-java-2023c-1.fc38.noarch 175/261 Verifying : xkeyboard-config-2.38-1.fc38.noarch 176/261 Verifying : xml-common-0.6.3-60.fc38.noarch 177/261 Verifying : xorg-x11-fonts-Type1-7.5-35.fc38.noarch 178/261 Verifying : xorg-x11-proto-devel-2022.2-3.fc38.noarch 179/261 Verifying : xprop-1.2.5-3.fc38.x86_64 180/261 Verifying : xz-devel-5.4.1-1.fc38.x86_64 181/261 Verifying : zlib-devel-1.2.13-3.fc38.x86_64 182/261 Verifying : annobin-docs-12.14-1.fc38.noarch 183/261 Verifying : annobin-plugin-gcc-12.14-1.fc38.x86_64 184/261 Verifying : at-spi2-atk-2.48.3-1.fc38.x86_64 185/261 Verifying : at-spi2-core-2.48.3-1.fc38.x86_64 186/261 Verifying : atk-2.48.3-1.fc38.x86_64 187/261 Verifying : avahi-libs-0.8-22.fc38.x86_64 188/261 Verifying : cairo-1.17.8-4.fc38.x86_64 189/261 Verifying : cairo-devel-1.17.8-4.fc38.x86_64 190/261 Verifying : cairo-gobject-1.17.8-4.fc38.x86_64 191/261 Verifying : clang-16.0.5-1.fc38.x86_64 192/261 Verifying : clang-devel-16.0.5-1.fc38.x86_64 193/261 Verifying : clang-libs-16.0.5-1.fc38.x86_64 194/261 Verifying : clang-resource-filesystem-16.0.5-1.fc38.x86_64 195/261 Verifying : clang-tools-extra-16.0.5-1.fc38.x86_64 196/261 Verifying : cmake-3.26.4-4.fc38.x86_64 197/261 Verifying : cmake-data-3.26.4-4.fc38.noarch 198/261 Verifying : cmake-filesystem-3.26.4-4.fc38.x86_64 199/261 Verifying : cmake-rpm-macros-3.26.4-4.fc38.noarch 200/261 Verifying : colord-libs-1.4.6-4.fc38.x86_64 201/261 Verifying : cpp-13.1.1-4.fc38.x86_64 202/261 Verifying : cups-libs-1:2.4.6-1.fc38.x86_64 203/261 Verifying : dbus-1:1.14.8-1.fc38.x86_64 204/261 Verifying : dbus-common-1:1.14.8-1.fc38.noarch 205/261 Verifying : dbus-libs-1:1.14.8-1.fc38.x86_64 206/261 Verifying : emacs-filesystem-1:28.2-7.fc38.noarch 207/261 Verifying : flexiblas-3.3.1-3.fc38.x86_64 208/261 Verifying : flexiblas-netlib-3.3.1-3.fc38.x86_64 209/261 Verifying : flexiblas-openblas-openmp-3.3.1-3.fc38.x86_64 210/261 Verifying : gcc-13.1.1-4.fc38.x86_64 211/261 Verifying : gcc-c++-13.1.1-4.fc38.x86_64 212/261 Verifying : gcc-plugin-annobin-13.1.1-4.fc38.x86_64 213/261 Verifying : glib2-2.76.3-1.fc38.x86_64 214/261 Verifying : glib2-devel-2.76.3-1.fc38.x86_64 215/261 Verifying : glibc-devel-2.37-4.fc38.x86_64 216/261 Verifying : glibc-headers-x86-2.37-4.fc38.noarch 217/261 Verifying : gtk-update-icon-cache-3.24.38-1.fc38.x86_64 218/261 Verifying : gtk3-3.24.38-1.fc38.x86_64 219/261 Verifying : kernel-headers-6.3.3-200.fc38.x86_64 220/261 Verifying : langpacks-core-font-en-3.0-32.fc38.noarch 221/261 Verifying : libX11-1.8.6-1.fc38.x86_64 222/261 Verifying : libX11-common-1.8.6-1.fc38.noarch 223/261 Verifying : libX11-devel-1.8.6-1.fc38.x86_64 224/261 Verifying : libX11-xcb-1.8.6-1.fc38.x86_64 225/261 Verifying : libXft-2.3.8-2.fc38.x86_64 226/261 Verifying : libXi-1.8.1-1.fc38.x86_64 227/261 Verifying : libgfortran-13.1.1-4.fc38.x86_64 228/261 Verifying : libquadmath-13.1.1-4.fc38.x86_64 229/261 Verifying : libquadmath-devel-13.1.1-4.fc38.x86_64 230/261 Verifying : libsoup3-3.4.2-2.fc38.x86_64 231/261 Verifying : libstdc++-devel-13.1.1-4.fc38.x86_64 232/261 Verifying : libtracker-sparql-3.5.3-1.fc38.x86_64 233/261 Verifying : libwayland-client-1.22.0-1.fc38.x86_64 234/261 Verifying : libwayland-cursor-1.22.0-1.fc38.x86_64 235/261 Verifying : libwayland-egl-1.22.0-1.fc38.x86_64 236/261 Verifying : libxcrypt-devel-4.4.35-1.fc38.x86_64 237/261 Verifying : libxml2-devel-2.10.4-1.fc38.x86_64 238/261 Verifying : llvm-16.0.5-1.fc38.x86_64 239/261 Verifying : llvm-devel-16.0.5-1.fc38.x86_64 240/261 Verifying : llvm-libs-16.0.5-1.fc38.x86_64 241/261 Verifying : llvm-static-16.0.5-1.fc38.x86_64 242/261 Verifying : llvm-test-16.0.5-1.fc38.x86_64 243/261 Verifying : nspr-4.35.0-7.fc38.x86_64 244/261 Verifying : nss-3.90.0-1.fc38.x86_64 245/261 Verifying : nss-softokn-3.90.0-1.fc38.x86_64 246/261 Verifying : nss-softokn-freebl-3.90.0-1.fc38.x86_64 247/261 Verifying : nss-sysinit-3.90.0-1.fc38.x86_64 248/261 Verifying : nss-util-3.90.0-1.fc38.x86_64 249/261 Verifying : openssl-devel-1:3.0.9-1.fc38.x86_64 250/261 Verifying : pyproject-rpm-macros-1.9.0-1.fc38.noarch 251/261 Verifying : python3-3.11.4-1.fc38.x86_64 252/261 Verifying : python3-Bottleneck-1.3.7-1.fc38.x86_64 253/261 Verifying : python3-devel-3.11.4-1.fc38.x86_64 254/261 Verifying : python3-libs-3.11.4-1.fc38.x86_64 255/261 Verifying : python3-numpy-1:1.24.3-1.fc38.x86_64 256/261 Verifying : python3-numpy-f2py-1:1.24.3-1.fc38.x86_64 257/261 Verifying : python3-pandas-1.5.3-3.fc38.x86_64 258/261 Verifying : python3-rpm-generators-14-4.fc38.noarch 259/261 Verifying : python3-scipy-1.10.1-1.fc38.x86_64 260/261 Verifying : vim-filesystem-2:9.0.1671-1.fc38.noarch 261/261 Installed: adwaita-cursor-theme-44.0-1.fc38.noarch adwaita-icon-theme-44.0-1.fc38.noarch annobin-docs-12.14-1.fc38.noarch annobin-plugin-gcc-12.14-1.fc38.x86_64 at-spi2-atk-2.48.3-1.fc38.x86_64 at-spi2-core-2.48.3-1.fc38.x86_64 atk-2.48.3-1.fc38.x86_64 avahi-libs-0.8-22.fc38.x86_64 bison-3.8.2-4.fc38.x86_64 boost-1.78.0-11.fc38.x86_64 boost-atomic-1.78.0-11.fc38.x86_64 boost-chrono-1.78.0-11.fc38.x86_64 boost-container-1.78.0-11.fc38.x86_64 boost-context-1.78.0-11.fc38.x86_64 boost-contract-1.78.0-11.fc38.x86_64 boost-coroutine-1.78.0-11.fc38.x86_64 boost-date-time-1.78.0-11.fc38.x86_64 boost-devel-1.78.0-11.fc38.x86_64 boost-fiber-1.78.0-11.fc38.x86_64 boost-filesystem-1.78.0-11.fc38.x86_64 boost-graph-1.78.0-11.fc38.x86_64 boost-iostreams-1.78.0-11.fc38.x86_64 boost-json-1.78.0-11.fc38.x86_64 boost-locale-1.78.0-11.fc38.x86_64 boost-log-1.78.0-11.fc38.x86_64 boost-math-1.78.0-11.fc38.x86_64 boost-nowide-1.78.0-11.fc38.x86_64 boost-numpy3-1.78.0-11.fc38.x86_64 boost-program-options-1.78.0-11.fc38.x86_64 boost-python3-1.78.0-11.fc38.x86_64 boost-random-1.78.0-11.fc38.x86_64 boost-regex-1.78.0-11.fc38.x86_64 boost-serialization-1.78.0-11.fc38.x86_64 boost-stacktrace-1.78.0-11.fc38.x86_64 boost-system-1.78.0-11.fc38.x86_64 boost-test-1.78.0-11.fc38.x86_64 boost-thread-1.78.0-11.fc38.x86_64 boost-timer-1.78.0-11.fc38.x86_64 boost-type_erasure-1.78.0-11.fc38.x86_64 boost-wave-1.78.0-11.fc38.x86_64 brotli-1.0.9-11.fc38.x86_64 brotli-devel-1.0.9-11.fc38.x86_64 bzip2-devel-1.0.8-13.fc38.x86_64 cairo-1.17.8-4.fc38.x86_64 cairo-devel-1.17.8-4.fc38.x86_64 cairo-gobject-1.17.8-4.fc38.x86_64 catch2-devel-2.13.10-1.fc38.x86_64 chrpath-0.16-19.fc38.x86_64 clang-16.0.5-1.fc38.x86_64 clang-devel-16.0.5-1.fc38.x86_64 clang-libs-16.0.5-1.fc38.x86_64 clang-resource-filesystem-16.0.5-1.fc38.x86_64 clang-tools-extra-16.0.5-1.fc38.x86_64 cmake-3.26.4-4.fc38.x86_64 cmake-data-3.26.4-4.fc38.noarch cmake-filesystem-3.26.4-4.fc38.x86_64 cmake-rpm-macros-3.26.4-4.fc38.noarch colord-libs-1.4.6-4.fc38.x86_64 comic-neue-fonts-2.51-6.fc38.noarch comic-neue-fonts-common-2.51-6.fc38.noarch copy-jdk-configs-4.1-2.fc38.noarch cpp-13.1.1-4.fc38.x86_64 crypto-policies-scripts-20230301-1.gita12f7b2.fc38.noarch cups-libs-1:2.4.6-1.fc38.x86_64 dbus-1:1.14.8-1.fc38.x86_64 dbus-broker-33-1.fc38.x86_64 dbus-common-1:1.14.8-1.fc38.noarch dbus-libs-1:1.14.8-1.fc38.x86_64 eigen3-devel-3.4.0-9.fc38.noarch emacs-filesystem-1:28.2-7.fc38.noarch expat-2.5.0-2.fc38.x86_64 flex-2.6.4-12.fc38.x86_64 flexiblas-3.3.1-3.fc38.x86_64 flexiblas-netlib-3.3.1-3.fc38.x86_64 flexiblas-openblas-openmp-3.3.1-3.fc38.x86_64 fontconfig-2.14.2-1.fc38.x86_64 fontconfig-devel-2.14.2-1.fc38.x86_64 fonts-filesystem-1:2.0.5-11.fc38.noarch freetype-2.13.0-2.fc38.x86_64 freetype-devel-2.13.0-2.fc38.x86_64 fribidi-1.0.12-3.fc38.x86_64 gc-8.2.2-3.fc38.x86_64 gcc-13.1.1-4.fc38.x86_64 gcc-c++-13.1.1-4.fc38.x86_64 gcc-plugin-annobin-13.1.1-4.fc38.x86_64 gdk-pixbuf2-2.42.10-2.fc38.x86_64 gdk-pixbuf2-modules-2.42.10-2.fc38.x86_64 gettext-0.21.1-2.fc38.x86_64 gettext-envsubst-0.21.1-2.fc38.x86_64 gettext-libs-0.21.1-2.fc38.x86_64 gettext-runtime-0.21.1-2.fc38.x86_64 glib2-2.76.3-1.fc38.x86_64 glib2-devel-2.76.3-1.fc38.x86_64 glibc-devel-2.37-4.fc38.x86_64 glibc-headers-x86-2.37-4.fc38.noarch gnutls-3.8.0-2.fc38.x86_64 google-noto-fonts-common-20230201-1.fc38.noarch google-noto-sans-vf-fonts-20230201-1.fc38.noarch graphite2-1.3.14-11.fc38.x86_64 graphite2-devel-1.3.14-11.fc38.x86_64 gtk-update-icon-cache-3.24.38-1.fc38.x86_64 gtk3-3.24.38-1.fc38.x86_64 guile22-2.2.7-7.fc38.x86_64 hamcrest-2.2-9.fc38.noarch harfbuzz-7.1.0-1.fc38.x86_64 harfbuzz-devel-7.1.0-1.fc38.x86_64 harfbuzz-icu-7.1.0-1.fc38.x86_64 hicolor-icon-theme-0.17-15.fc38.noarch inchi-devel-1.0.6-6.fc38.x86_64 inchi-libs-1.0.6-6.fc38.x86_64 java-1.8.0-openjdk-headless-1:1.8.0.362.b09-2.fc38.x86_64 javapackages-filesystem-6.1.0-7.fc38.noarch jbigkit-libs-2.1-25.fc38.x86_64 json-glib-1.6.6-4.fc38.x86_64 jsoncpp-1.9.5-4.fc38.x86_64 junit-1:4.13.1-9.fc38.noarch kernel-headers-6.3.3-200.fc38.x86_64 keyutils-libs-devel-1.6.1-6.fc38.x86_64 krb5-devel-1.20.1-8.fc38.x86_64 langpacks-core-font-en-3.0-32.fc38.noarch lcms2-2.15-1.fc38.x86_64 libX11-1.8.6-1.fc38.x86_64 libX11-common-1.8.6-1.fc38.noarch libX11-devel-1.8.6-1.fc38.x86_64 libX11-xcb-1.8.6-1.fc38.x86_64 libXau-1.0.11-2.fc38.x86_64 libXau-devel-1.0.11-2.fc38.x86_64 libXcomposite-0.4.5-9.fc38.x86_64 libXcursor-1.2.1-3.fc38.x86_64 libXdamage-1.1.5-9.fc38.x86_64 libXext-1.3.5-2.fc38.x86_64 libXext-devel-1.3.5-2.fc38.x86_64 libXfixes-6.0.0-5.fc38.x86_64 libXft-2.3.8-2.fc38.x86_64 libXi-1.8.1-1.fc38.x86_64 libXinerama-1.1.5-2.fc38.x86_64 libXrandr-1.5.2-10.fc38.x86_64 libXrender-0.9.11-2.fc38.x86_64 libXrender-devel-0.9.11-2.fc38.x86_64 libXtst-1.2.4-2.fc38.x86_64 libb2-0.98.1-8.fc38.x86_64 libblkid-devel-2.38.1-4.fc38.x86_64 libcloudproviders-0.3.1-7.fc38.x86_64 libcom_err-devel-1.46.5-4.fc38.x86_64 libdatrie-0.2.13-5.fc38.x86_64 libedit-3.1-45.20221030cvs.fc38.x86_64 libedit-devel-3.1-45.20221030cvs.fc38.x86_64 libepoxy-1.5.10-3.fc38.x86_64 libffi-devel-3.4.4-2.fc38.x86_64 libfontenc-1.1.6-2.fc38.x86_64 libgfortran-13.1.1-4.fc38.x86_64 libgusb-0.4.5-1.fc38.x86_64 libicu-72.1-2.fc38.x86_64 libicu-devel-72.1-2.fc38.x86_64 libimagequant-2.17.0-4.fc38.x86_64 libjpeg-turbo-2.1.4-2.fc38.x86_64 libkadm5-1.20.1-8.fc38.x86_64 libmount-devel-2.38.1-4.fc38.x86_64 libmpc-1.3.1-2.fc38.x86_64 libpng-2:1.6.37-14.fc38.x86_64 libpng-devel-2:1.6.37-14.fc38.x86_64 libquadmath-13.1.1-4.fc38.x86_64 libquadmath-devel-13.1.1-4.fc38.x86_64 libraqm-0.8.0-4.fc38.x86_64 libselinux-devel-3.5-1.fc38.x86_64 libsepol-devel-3.5-1.fc38.x86_64 libsoup3-3.4.2-2.fc38.x86_64 libstdc++-devel-13.1.1-4.fc38.x86_64 libstemmer-2.2.0-5.fc38.x86_64 libthai-0.1.29-4.fc38.x86_64 libtiff-4.4.0-5.fc38.x86_64 libtool-ltdl-2.4.7-6.fc38.x86_64 libtracker-sparql-3.5.3-1.fc38.x86_64 libunistring-1.1-3.fc38.x86_64 libusb1-1.0.26-2.fc38.x86_64 libuv-1:1.44.2-3.fc38.x86_64 libverto-devel-0.3.2-5.fc38.x86_64 libwayland-client-1.22.0-1.fc38.x86_64 libwayland-cursor-1.22.0-1.fc38.x86_64 libwayland-egl-1.22.0-1.fc38.x86_64 libwebp-1.3.0-2.fc38.x86_64 libxcb-1.13.1-11.fc38.x86_64 libxcb-devel-1.13.1-11.fc38.x86_64 libxcrypt-devel-4.4.35-1.fc38.x86_64 libxkbcommon-1.5.0-2.fc38.x86_64 libxml2-devel-2.10.4-1.fc38.x86_64 lksctp-tools-1.0.19-3.fc38.x86_64 llvm-16.0.5-1.fc38.x86_64 llvm-devel-16.0.5-1.fc38.x86_64 llvm-libs-16.0.5-1.fc38.x86_64 llvm-static-16.0.5-1.fc38.x86_64 llvm-test-16.0.5-1.fc38.x86_64 lua-5.4.4-9.fc38.x86_64 lua-posix-35.1-5.fc38.x86_64 m4-1.4.19-5.fc38.x86_64 maeparser-1.3.1-1.fc38.x86_64 maeparser-devel-1.3.1-1.fc38.x86_64 make-1:4.4-3.fc38.x86_64 mkfontscale-1.2.2-3.fc38.x86_64 mpdecimal-2.5.1-6.fc38.x86_64 ncurses-c++-libs-6.4-3.20230114.fc38.x86_64 ncurses-devel-6.4-3.20230114.fc38.x86_64 nettle-3.8-3.fc38.x86_64 nspr-4.35.0-7.fc38.x86_64 nss-3.90.0-1.fc38.x86_64 nss-softokn-3.90.0-1.fc38.x86_64 nss-softokn-freebl-3.90.0-1.fc38.x86_64 nss-sysinit-3.90.0-1.fc38.x86_64 nss-util-3.90.0-1.fc38.x86_64 openblas-0.3.21-4.fc38.x86_64 openblas-openmp-0.3.21-4.fc38.x86_64 openjpeg2-2.5.0-3.fc38.x86_64 openssl-devel-1:3.0.9-1.fc38.x86_64 pango-1.50.14-1.fc38.x86_64 pcre2-devel-10.42-1.fc38.1.x86_64 pcre2-utf16-10.42-1.fc38.1.x86_64 pcre2-utf32-10.42-1.fc38.1.x86_64 pixman-0.42.2-1.fc38.x86_64 pixman-devel-0.42.2-1.fc38.x86_64 postgresql-private-devel-15.1-2.fc38.x86_64 postgresql-private-libs-15.1-2.fc38.x86_64 postgresql-server-devel-15.1-2.fc38.x86_64 pyproject-rpm-macros-1.9.0-1.fc38.noarch python-pip-wheel-22.3.1-2.fc38.noarch python-rpm-macros-3.11-10.fc38.noarch python-setuptools-wheel-65.5.1-2.fc38.noarch python3-3.11.4-1.fc38.x86_64 python3-Bottleneck-1.3.7-1.fc38.x86_64 python3-cairocffi-1.3.0-7.fc38.noarch python3-cffi-1.15.1-4.fc38.x86_64 python3-dateutil-1:2.8.2-5.fc38.noarch python3-devel-3.11.4-1.fc38.x86_64 python3-libs-3.11.4-1.fc38.x86_64 python3-numexpr-2.8.4-1.fc38.x86_64 python3-numpy-1:1.24.3-1.fc38.x86_64 python3-numpy-f2py-1:1.24.3-1.fc38.x86_64 python3-olefile-0.46-19.fc38.noarch python3-packaging-23.0-1.fc38.noarch python3-pandas-1.5.3-3.fc38.x86_64 python3-pillow-9.4.0-2.fc38.x86_64 python3-ply-3.11-18.fc38.noarch python3-pycparser-2.20-9.fc38.noarch python3-pytz-2023.3-1.fc38.noarch python3-rpm-generators-14-4.fc38.noarch python3-rpm-macros-3.11-10.fc38.noarch python3-scipy-1.10.1-1.fc38.x86_64 python3-six-1.16.0-9.fc38.noarch python3-xcffib-1.2.0-1.fc38.noarch rhash-1.4.3-2.fc38.x86_64 shared-mime-info-2.2-3.fc38.x86_64 sysprof-capture-devel-3.48.0-1.fc38.x86_64 ttmkfdir-3.0.9-67.fc38.x86_64 tzdata-java-2023c-1.fc38.noarch vim-filesystem-2:9.0.1671-1.fc38.noarch xkeyboard-config-2.38-1.fc38.noarch xml-common-0.6.3-60.fc38.noarch xorg-x11-fonts-Type1-7.5-35.fc38.noarch xorg-x11-proto-devel-2022.2-3.fc38.noarch xprop-1.2.5-3.fc38.x86_64 xz-devel-5.4.1-1.fc38.x86_64 zlib-devel-1.2.13-3.fc38.x86_64 Complete! Finish: build setup for rdkit-2023.03.2-1.fc38.src.rpm Start: rpmbuild rdkit-2023.03.2-1.fc38.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1688342400 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.jFYS3m + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf rdkit-Release_2023_03_2 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/rdkit-Release_2023_03_2.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd rdkit-Release_2023_03_2 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . ++ find ./ -name '*.py' + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/utils/test_list.py ./rdkit/utils/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/utils/spiral.py ./rdkit/utils/spiral.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/utils/listutils.py ./rdkit/utils/listutils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/utils/fileutils.py ./rdkit/utils/fileutils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/utils/comhack.py ./rdkit/utils/comhack.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/utils/chemutils.py ./rdkit/utils/chemutils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/utils/chemdraw_qax.py ./rdkit/utils/chemdraw_qax.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/utils/chemdraw.py ./rdkit/utils/chemdraw.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/utils/cactvs.py ./rdkit/utils/cactvs.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/utils/__init__.py ./rdkit/utils/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/utils/UnitTestUtils.py ./rdkit/utils/UnitTestUtils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/test_list.py ./rdkit/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/utils.py ./rdkit/sping/utils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/util/__init__.py ./rdkit/sping/util/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/util/HTMLPiddler.py ./rdkit/sping/util/HTMLPiddler.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/tests/testallps.py ./rdkit/sping/tests/testallps.py: updating + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/tests/test_list.py ./rdkit/sping/tests/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/tests/pstests.py ./rdkit/sping/tests/pstests.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/tests/pidtest.py ./rdkit/sping/tests/pidtest.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/tests/__init__.py ./rdkit/sping/tests/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/test_list.py ./rdkit/sping/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/stringformat.py ./rdkit/sping/stringformat.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/pid.py ./rdkit/sping/pid.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/pagesizes.py ./rdkit/sping/pagesizes.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/examples/tkCanvasPIL-with-scrollbars.py ./rdkit/sping/examples/tkCanvasPIL-with-scrollbars.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/examples/tkCanvas-with-scrollbars.py ./rdkit/sping/examples/tkCanvas-with-scrollbars.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/examples/formatted-strings.py ./rdkit/sping/examples/formatted-strings.py: updating + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/colors.py ./rdkit/sping/colors.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/__init__.py ./rdkit/sping/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/WX/pidWxDc.py ./rdkit/sping/WX/pidWxDc.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/WX/pidWX.py ./rdkit/sping/WX/pidWX.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/WX/__init__.py ./rdkit/sping/WX/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/TK/pidTK.py ./rdkit/sping/TK/pidTK.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/TK/__init__.py ./rdkit/sping/TK/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/SVG/pidSVG.py ./rdkit/sping/SVG/pidSVG.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/SVG/__init__.py ./rdkit/sping/SVG/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/ReportLab/pidReportLab.py ./rdkit/sping/ReportLab/pidReportLab.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/ReportLab/__init__.py ./rdkit/sping/ReportLab/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/Qt/pidQt4.py ./rdkit/sping/Qt/pidQt4.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/Qt/pidQt.py ./rdkit/sping/Qt/pidQt.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/Qt/__init__.py ./rdkit/sping/Qt/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/Pyart/pidPyart.py ./rdkit/sping/Pyart/pidPyart.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/Pyart/__init__.py ./rdkit/sping/Pyart/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/Pyart/Fontmapping.py ./rdkit/sping/Pyart/Fontmapping.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/PS/psmetrics.py ./rdkit/sping/PS/psmetrics.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/PS/pidPS.py ./rdkit/sping/PS/pidPS.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/PS/latin1MetricsCache.py ./rdkit/sping/PS/latin1MetricsCache.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/PS/fontinfo.py ./rdkit/sping/PS/fontinfo.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/PS/__init__.py ./rdkit/sping/PS/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/PIL/pilfonts/removemedium.py ./rdkit/sping/PIL/pilfonts/removemedium.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/PIL/pidPIL.py ./rdkit/sping/PIL/pidPIL.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/PIL/__init__.py ./rdkit/sping/PIL/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/PDF/pidPDF.py ./rdkit/sping/PDF/pidPDF.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/PDF/pdfutils.py ./rdkit/sping/PDF/pdfutils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/PDF/pdfmetrics.py ./rdkit/sping/PDF/pdfmetrics.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/PDF/pdfgeom.py ./rdkit/sping/PDF/pdfgeom.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/PDF/pdfgen.py ./rdkit/sping/PDF/pdfgen.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/PDF/pdfdoc.py ./rdkit/sping/PDF/pdfdoc.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/PDF/__init__.py ./rdkit/sping/PDF/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/six.py ./rdkit/six.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/__init__.py ./rdkit/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/test_list.py ./rdkit/VLib/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/__init__.py ./rdkit/VLib/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/UnitTestVLib.py ./rdkit/VLib/UnitTestVLib.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/Transform.py ./rdkit/VLib/Transform.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/Supply.py ./rdkit/VLib/Supply.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/Output.py ./rdkit/VLib/Output.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/NodeLib/test_list.py ./rdkit/VLib/NodeLib/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/NodeLib/demo.py ./rdkit/VLib/NodeLib/demo.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/NodeLib/__init__.py ./rdkit/VLib/NodeLib/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/NodeLib/UnitTestNodeLib.py ./rdkit/VLib/NodeLib/UnitTestNodeLib.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/NodeLib/SmilesSupply.py ./rdkit/VLib/NodeLib/SmilesSupply.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/NodeLib/SmilesOutput.py ./rdkit/VLib/NodeLib/SmilesOutput.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/NodeLib/SmilesDupeFilter.py ./rdkit/VLib/NodeLib/SmilesDupeFilter.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/NodeLib/SmartsRemover.py ./rdkit/VLib/NodeLib/SmartsRemover.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/NodeLib/SmartsMolFilter.py ./rdkit/VLib/NodeLib/SmartsMolFilter.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/NodeLib/SDSupply.py ./rdkit/VLib/NodeLib/SDSupply.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/NodeLib/DbPickleSupplier.py ./rdkit/VLib/NodeLib/DbPickleSupplier.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/NodeLib/DbMolSupply.py ./rdkit/VLib/NodeLib/DbMolSupply.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/Node.py ./rdkit/VLib/Node.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/Filter.py ./rdkit/VLib/Filter.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/UnitTestLogging.py ./rdkit/UnitTestLogging.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/TestRunner.py ./rdkit/TestRunner.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/SimDivFilters/test_list.py ./rdkit/SimDivFilters/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/SimDivFilters/test_data/genfps.py ./rdkit/SimDivFilters/test_data/genfps.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/SimDivFilters/__init__.py ./rdkit/SimDivFilters/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/SimDivFilters/UnitTestSimilarityPickers.py ./rdkit/SimDivFilters/UnitTestSimilarityPickers.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/SimDivFilters/SimilarityPickers.py ./rdkit/SimDivFilters/SimilarityPickers.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/RDRandom.py ./rdkit/RDRandom.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/RDLogger.py ./rdkit/RDLogger.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/RDConfig.py ./rdkit/RDConfig.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Numerics/__init__.py ./rdkit/Numerics/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/test_list.py ./rdkit/ML/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/test_data/populate.py ./rdkit/ML/test_data/populate.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/files.py ./rdkit/ML/files.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/__init__.py ./rdkit/ML/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/UnitTestScreenComposite.py ./rdkit/ML/UnitTestScreenComposite.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/UnitTestBuildComposite.py ./rdkit/ML/UnitTestBuildComposite.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/UnitTestAnalyzeComposite.py ./rdkit/ML/UnitTestAnalyzeComposite.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/ScreenComposite.py ./rdkit/ML/ScreenComposite.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Scoring/test_list.py ./rdkit/ML/Scoring/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Scoring/__init__.py ./rdkit/ML/Scoring/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Scoring/UnitTestScoring.py ./rdkit/ML/Scoring/UnitTestScoring.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Scoring/Scoring.py ./rdkit/ML/Scoring/Scoring.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/SLT/test_list.py ./rdkit/ML/SLT/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/SLT/__init__.py ./rdkit/ML/SLT/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/SLT/UnitTestRisk.py ./rdkit/ML/SLT/UnitTestRisk.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/SLT/Risk.py ./rdkit/ML/SLT/Risk.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Neural/test_list.py ./rdkit/ML/Neural/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Neural/__init__.py ./rdkit/ML/Neural/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Neural/UnitTestTrainer.py ./rdkit/ML/Neural/UnitTestTrainer.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Neural/UnitTestOther.py ./rdkit/ML/Neural/UnitTestOther.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Neural/Trainers.py ./rdkit/ML/Neural/Trainers.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Neural/Network.py ./rdkit/ML/Neural/Network.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Neural/NetNode.py ./rdkit/ML/Neural/NetNode.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Neural/CrossValidate.py ./rdkit/ML/Neural/CrossValidate.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Neural/ActFuncs.py ./rdkit/ML/Neural/ActFuncs.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/NaiveBayes/test_list.py ./rdkit/ML/NaiveBayes/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/NaiveBayes/__init__.py ./rdkit/ML/NaiveBayes/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/NaiveBayes/UnitTestNB.py ./rdkit/ML/NaiveBayes/UnitTestNB.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/NaiveBayes/CrossValidate.py ./rdkit/ML/NaiveBayes/CrossValidate.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/NaiveBayes/ClassificationModel.py ./rdkit/ML/NaiveBayes/ClassificationModel.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/ModelPackage/test_list.py ./rdkit/ML/ModelPackage/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/ModelPackage/__init__.py ./rdkit/ML/ModelPackage/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/ModelPackage/UnitTestPackage.py ./rdkit/ML/ModelPackage/UnitTestPackage.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/ModelPackage/Packager.py ./rdkit/ML/ModelPackage/Packager.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/ModelPackage/PackageUtils.py ./rdkit/ML/ModelPackage/PackageUtils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/MatOps.py ./rdkit/ML/MatOps.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/MLUtils/__init__.py ./rdkit/ML/MLUtils/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/MLUtils/VoteImg.py ./rdkit/ML/MLUtils/VoteImg.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/KNN/test_list.py ./rdkit/ML/KNN/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/KNN/__init__.py ./rdkit/ML/KNN/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/KNN/UnitTestKNN.py ./rdkit/ML/KNN/UnitTestKNN.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/KNN/KNNRegressionModel.py ./rdkit/ML/KNN/KNNRegressionModel.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/KNN/KNNModel.py ./rdkit/ML/KNN/KNNModel.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/KNN/KNNClassificationModel.py ./rdkit/ML/KNN/KNNClassificationModel.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/KNN/DistFunctions.py ./rdkit/ML/KNN/DistFunctions.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/KNN/CrossValidate.py ./rdkit/ML/KNN/CrossValidate.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/InfoTheory/test_list.py ./rdkit/ML/InfoTheory/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/InfoTheory/entropy.py ./rdkit/ML/InfoTheory/entropy.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/InfoTheory/__init__.py ./rdkit/ML/InfoTheory/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/InfoTheory/UnitTestCorrMatGen.py ./rdkit/ML/InfoTheory/UnitTestCorrMatGen.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/InfoTheory/UnitTestBitRanker.py ./rdkit/ML/InfoTheory/UnitTestBitRanker.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/InfoTheory/BitRank.py ./rdkit/ML/InfoTheory/BitRank.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/InfoTheory/BitClusterer.py ./rdkit/ML/InfoTheory/BitClusterer.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/GrowComposite.py ./rdkit/ML/GrowComposite.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/EnrichPlot.py ./rdkit/ML/EnrichPlot.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Descriptors/test_list.py ./rdkit/ML/Descriptors/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Descriptors/__init__.py ./rdkit/ML/Descriptors/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Descriptors/UnitTestParser.py ./rdkit/ML/Descriptors/UnitTestParser.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Descriptors/UnitTestMolDescriptors.py ./rdkit/ML/Descriptors/UnitTestMolDescriptors.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Descriptors/UnitTestDescriptors.py ./rdkit/ML/Descriptors/UnitTestDescriptors.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Descriptors/UnitTestCOMServer.py ./rdkit/ML/Descriptors/UnitTestCOMServer.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Descriptors/Parser.py ./rdkit/ML/Descriptors/Parser.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Descriptors/MoleculeDescriptors.py ./rdkit/ML/Descriptors/MoleculeDescriptors.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Descriptors/Descriptors.py ./rdkit/ML/Descriptors/Descriptors.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Descriptors/CompoundDescriptors.py ./rdkit/ML/Descriptors/CompoundDescriptors.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/test_list.py ./rdkit/ML/DecTree/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/randomtest.py ./rdkit/ML/DecTree/randomtest.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/__init__.py ./rdkit/ML/DecTree/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/UnitTestXVal.py ./rdkit/ML/DecTree/UnitTestXVal.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/UnitTestTreeUtils.py ./rdkit/ML/DecTree/UnitTestTreeUtils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/UnitTestTree.py ./rdkit/ML/DecTree/UnitTestTree.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/UnitTestSigTree.py ./rdkit/ML/DecTree/UnitTestSigTree.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/UnitTestQuantTree.py ./rdkit/ML/DecTree/UnitTestQuantTree.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/UnitTestPrune.py ./rdkit/ML/DecTree/UnitTestPrune.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/UnitTestID3.py ./rdkit/ML/DecTree/UnitTestID3.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/TreeVis.py ./rdkit/ML/DecTree/TreeVis.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/TreeUtils.py ./rdkit/ML/DecTree/TreeUtils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/Tree.py ./rdkit/ML/DecTree/Tree.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/SigTree.py ./rdkit/ML/DecTree/SigTree.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/QuantTree.py ./rdkit/ML/DecTree/QuantTree.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/PruneTree.py ./rdkit/ML/DecTree/PruneTree.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/ID3.py ./rdkit/ML/DecTree/ID3.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/Forest.py ./rdkit/ML/DecTree/Forest.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/DecTree.py ./rdkit/ML/DecTree/DecTree.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/CrossValidate.py ./rdkit/ML/DecTree/CrossValidate.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/BuildSigTree.py ./rdkit/ML/DecTree/BuildSigTree.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/BuildQuantTree.py ./rdkit/ML/DecTree/BuildQuantTree.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Data/test_list.py ./rdkit/ML/Data/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Data/test_data/populate.py ./rdkit/ML/Data/test_data/populate.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Data/__init__.py ./rdkit/ML/Data/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Data/UnitTestStats.py ./rdkit/ML/Data/UnitTestStats.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Data/UnitTestQuantize.py ./rdkit/ML/Data/UnitTestQuantize.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Data/UnitTestMLData.py ./rdkit/ML/Data/UnitTestMLData.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Data/UnitTestFilter.py ./rdkit/ML/Data/UnitTestFilter.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Data/UnitTestDoctests.py ./rdkit/ML/Data/UnitTestDoctests.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Data/Transforms.py ./rdkit/ML/Data/Transforms.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Data/Stats.py ./rdkit/ML/Data/Stats.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Data/SplitData.py ./rdkit/ML/Data/SplitData.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Data/Quantize.py ./rdkit/ML/Data/Quantize.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Data/MLData.py ./rdkit/ML/Data/MLData.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Data/FindQuantBounds.py ./rdkit/ML/Data/FindQuantBounds.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Data/DataUtils.py ./rdkit/ML/Data/DataUtils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/CompositeRun.py ./rdkit/ML/CompositeRun.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Composite/test_list.py ./rdkit/ML/Composite/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Composite/__init__.py ./rdkit/ML/Composite/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Composite/UnitTestComposite.py ./rdkit/ML/Composite/UnitTestComposite.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Composite/UnitTestCOMServer.py ./rdkit/ML/Composite/UnitTestCOMServer.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Composite/Composite.py ./rdkit/ML/Composite/Composite.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Composite/BayesComposite.py ./rdkit/ML/Composite/BayesComposite.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Composite/AdjustComposite.py ./rdkit/ML/Composite/AdjustComposite.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Cluster/test_list.py ./rdkit/ML/Cluster/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Cluster/murtagh_test.py ./rdkit/ML/Cluster/murtagh_test.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Cluster/__init__.py ./rdkit/ML/Cluster/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Cluster/UnitTestCluster.py ./rdkit/ML/Cluster/UnitTestCluster.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Cluster/UnitTestButina.py ./rdkit/ML/Cluster/UnitTestButina.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Cluster/Standardize.py ./rdkit/ML/Cluster/Standardize.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Cluster/Resemblance.py ./rdkit/ML/Cluster/Resemblance.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Cluster/Murtagh.py ./rdkit/ML/Cluster/Murtagh.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Cluster/Clusters.py ./rdkit/ML/Cluster/Clusters.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Cluster/ClusterVis.py ./rdkit/ML/Cluster/ClusterVis.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Cluster/ClusterUtils.py ./rdkit/ML/Cluster/ClusterUtils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Cluster/Butina.py ./rdkit/ML/Cluster/Butina.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/BuildComposite.py ./rdkit/ML/BuildComposite.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/AnalyzeComposite.py ./rdkit/ML/AnalyzeComposite.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Geometry/__init__.py ./rdkit/Geometry/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ForceField/__init__.py ./rdkit/ForceField/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/DistanceGeometry/__init__.py ./rdkit/DistanceGeometry/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Dbase/test_list.py ./rdkit/Dbase/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Dbase/__init__.py ./rdkit/Dbase/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Dbase/UnitTestStorageUtils.py ./rdkit/Dbase/UnitTestStorageUtils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Dbase/UnitTestDbUtils.py ./rdkit/Dbase/UnitTestDbUtils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Dbase/UnitTestDbResultSet.py ./rdkit/Dbase/UnitTestDbResultSet.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Dbase/UnitTestDbInfo.py ./rdkit/Dbase/UnitTestDbInfo.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Dbase/UnitTestDbConnect.py ./rdkit/Dbase/UnitTestDbConnect.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Dbase/StorageUtils.py ./rdkit/Dbase/StorageUtils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Dbase/DbUtils.py ./rdkit/Dbase/DbUtils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Dbase/DbResultSet.py ./rdkit/Dbase/DbResultSet.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Dbase/DbReport.py ./rdkit/Dbase/DbReport.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Dbase/DbModule.py ./rdkit/Dbase/DbModule.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Dbase/DbInfo.py ./rdkit/Dbase/DbInfo.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Dbase/DbConnection.py ./rdkit/Dbase/DbConnection.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/DataStructs/test_list.py ./rdkit/DataStructs/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/DataStructs/__init__.py ./rdkit/DataStructs/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/DataStructs/VectCollection.py ./rdkit/DataStructs/VectCollection.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/DataStructs/UnitTestcBitVect.py ./rdkit/DataStructs/UnitTestcBitVect.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/DataStructs/UnitTestTopNContainer.py ./rdkit/DataStructs/UnitTestTopNContainer.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/DataStructs/UnitTestDocTests.py ./rdkit/DataStructs/UnitTestDocTests.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/DataStructs/UnitTestBitEnsemble.py ./rdkit/DataStructs/UnitTestBitEnsemble.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/DataStructs/TopNContainer.py ./rdkit/DataStructs/TopNContainer.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/DataStructs/LazySignature.py ./rdkit/DataStructs/LazySignature.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/DataStructs/HierarchyVis.py ./rdkit/DataStructs/HierarchyVis.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/DataStructs/BitUtils.py ./rdkit/DataStructs/BitUtils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/DataStructs/BitEnsembleDb.py ./rdkit/DataStructs/BitEnsembleDb.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/DataStructs/BitEnsemble.py ./rdkit/DataStructs/BitEnsemble.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/DataManip/__init__.py ./rdkit/DataManip/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/DataManip/Metric/__init__.py ./rdkit/DataManip/Metric/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/test_list.py ./rdkit/Chem/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/test_data/BuildDescrsTestSet.py ./rdkit/Chem/test_data/BuildDescrsTestSet.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/test_data/BuildDescrsTestSet.Crippen.py ./rdkit/Chem/test_data/BuildDescrsTestSet.Crippen.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/test_data/BuildCrippenTestSet.py ./rdkit/Chem/test_data/BuildCrippenTestSet.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/fmcs/fmcs.py ./rdkit/Chem/fmcs/fmcs.py: updating + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/fmcs/__init__.py ./rdkit/Chem/fmcs/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/__init__.py ./rdkit/Chem/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestSurf.py ./rdkit/Chem/UnitTestSurf.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestSuppliers.py ./rdkit/Chem/UnitTestSuppliers.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestSmiles.py ./rdkit/Chem/UnitTestSmiles.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestSaltRemover.py ./rdkit/Chem/UnitTestSaltRemover.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestSATIS.py ./rdkit/Chem/UnitTestSATIS.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestRegistrationHash.py ./rdkit/Chem/UnitTestRegistrationHash.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestQED.py ./rdkit/Chem/UnitTestQED.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestPandasTools.py ./rdkit/Chem/UnitTestPandasTools.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestOldBugs.py ./rdkit/Chem/UnitTestOldBugs.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestMol3D.py ./rdkit/Chem/UnitTestMol3D.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestMCS.py ./rdkit/Chem/UnitTestMCS.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestLipinski.py ./rdkit/Chem/UnitTestLipinski.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestInchi.py ./rdkit/Chem/UnitTestInchi.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestGraphDescriptors_2.py ./rdkit/Chem/UnitTestGraphDescriptors_2.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestFunctionalGroups.py ./rdkit/Chem/UnitTestFunctionalGroups.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestFragmentDescriptors.py ./rdkit/Chem/UnitTestFragmentDescriptors.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestFeatFinderCLI.py ./rdkit/Chem/UnitTestFeatFinderCLI.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestEnumerateHeterocycles.py ./rdkit/Chem/UnitTestEnumerateHeterocycles.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestDocTestsChem.py ./rdkit/Chem/UnitTestDocTestsChem.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestDescriptors.py ./rdkit/Chem/UnitTestDescriptors.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestCrippen.py ./rdkit/Chem/UnitTestCrippen.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestChemv2.py ./rdkit/Chem/UnitTestChemv2.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestChemSmarts.py ./rdkit/Chem/UnitTestChemSmarts.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestChemBond.py ./rdkit/Chem/UnitTestChemBond.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestChemAtom.py ./rdkit/Chem/UnitTestChemAtom.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestChem.py ./rdkit/Chem/UnitTestChem.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestCatalog.py ./rdkit/Chem/UnitTestCatalog.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/TorsionFingerprints.py ./rdkit/Chem/TorsionFingerprints.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/TemplateAlign.py ./rdkit/Chem/TemplateAlign.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Suppliers/test_list.py ./rdkit/Chem/Suppliers/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Suppliers/__init__.py ./rdkit/Chem/Suppliers/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Suppliers/UnitTestSmilesMolSupplier.py ./rdkit/Chem/Suppliers/UnitTestSmilesMolSupplier.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Suppliers/UnitTestSDMolSupplier.py ./rdkit/Chem/Suppliers/UnitTestSDMolSupplier.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Suppliers/UnitTestDbMolSupplier.py ./rdkit/Chem/Suppliers/UnitTestDbMolSupplier.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Suppliers/MolSupplier.py ./rdkit/Chem/Suppliers/MolSupplier.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Suppliers/DbMolSupplier.py ./rdkit/Chem/Suppliers/DbMolSupplier.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Subshape/test_list.py ./rdkit/Chem/Subshape/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Subshape/testCombined.py ./rdkit/Chem/Subshape/testCombined.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Subshape/__init__.py ./rdkit/Chem/Subshape/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Subshape/UnitTestSubshape.py ./rdkit/Chem/Subshape/UnitTestSubshape.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Subshape/SubshapeObjects.py ./rdkit/Chem/Subshape/SubshapeObjects.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Subshape/SubshapeBuilder.py ./rdkit/Chem/Subshape/SubshapeBuilder.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Subshape/SubshapeAligner.py ./rdkit/Chem/Subshape/SubshapeAligner.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Subshape/BuilderUtils.py ./rdkit/Chem/Subshape/BuilderUtils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/SimpleEnum/test_list.py ./rdkit/Chem/SimpleEnum/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/SimpleEnum/__init__.py ./rdkit/Chem/SimpleEnum/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/SimpleEnum/UnitTestEnumerator.py ./rdkit/Chem/SimpleEnum/UnitTestEnumerator.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/SimpleEnum/Enumerator.py ./rdkit/Chem/SimpleEnum/Enumerator.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/ShowMols.py ./rdkit/Chem/ShowMols.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Scaffolds/test_list.py ./rdkit/Chem/Scaffolds/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Scaffolds/__init__.py ./rdkit/Chem/Scaffolds/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Scaffolds/UnitTestMurckoScaffold.py ./rdkit/Chem/Scaffolds/UnitTestMurckoScaffold.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Scaffolds/MurckoScaffold.py ./rdkit/Chem/Scaffolds/MurckoScaffold.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/SaltRemover.py ./rdkit/Chem/SaltRemover.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/SATIS.py ./rdkit/Chem/SATIS.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/RegistrationHash.py ./rdkit/Chem/RegistrationHash.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/ReducedGraphs.py ./rdkit/Chem/ReducedGraphs.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Recap.py ./rdkit/Chem/Recap.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Randomize.py ./rdkit/Chem/Randomize.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/QED.py ./rdkit/Chem/QED.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/PyMol.py ./rdkit/Chem/PyMol.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/PropertyMol.py ./rdkit/Chem/PropertyMol.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm3D/test_list.py ./rdkit/Chem/Pharm3D/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm3D/__init__.py ./rdkit/Chem/Pharm3D/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm3D/UnitTestPharmacophore.py ./rdkit/Chem/Pharm3D/UnitTestPharmacophore.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm3D/UnitTestExcludedVolume.py ./rdkit/Chem/Pharm3D/UnitTestExcludedVolume.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm3D/UnitTestEmbed.py ./rdkit/Chem/Pharm3D/UnitTestEmbed.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm3D/Pharmacophore.py ./rdkit/Chem/Pharm3D/Pharmacophore.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm3D/ExcludedVolume.py ./rdkit/Chem/Pharm3D/ExcludedVolume.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm3D/EmbedLib.py ./rdkit/Chem/Pharm3D/EmbedLib.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm2D/test_list.py ./rdkit/Chem/Pharm2D/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm2D/__init__.py ./rdkit/Chem/Pharm2D/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm2D/Utils.py ./rdkit/Chem/Pharm2D/Utils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm2D/UnitTestUtils.py ./rdkit/Chem/Pharm2D/UnitTestUtils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm2D/UnitTestSignature.py ./rdkit/Chem/Pharm2D/UnitTestSignature.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm2D/UnitTestMatcher.py ./rdkit/Chem/Pharm2D/UnitTestMatcher.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm2D/UnitTestLazyGenerator.py ./rdkit/Chem/Pharm2D/UnitTestLazyGenerator.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm2D/UnitTestGobbi.py ./rdkit/Chem/Pharm2D/UnitTestGobbi.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm2D/UnitTestGenerate.py ./rdkit/Chem/Pharm2D/UnitTestGenerate.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm2D/SigFactory.py ./rdkit/Chem/Pharm2D/SigFactory.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm2D/Matcher.py ./rdkit/Chem/Pharm2D/Matcher.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm2D/LazyGenerator.py ./rdkit/Chem/Pharm2D/LazyGenerator.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm2D/Gobbi_Pharm2D.py ./rdkit/Chem/Pharm2D/Gobbi_Pharm2D.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm2D/Generate.py ./rdkit/Chem/Pharm2D/Generate.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/PandasTools.py ./rdkit/Chem/PandasTools.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/PandasPatcher.py ./rdkit/Chem/PandasPatcher.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolSurf.py ./rdkit/Chem/MolSurf.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolStandardize/validations.py ./rdkit/Chem/MolStandardize/validations.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolStandardize/validate.py ./rdkit/Chem/MolStandardize/validate.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolStandardize/utils.py ./rdkit/Chem/MolStandardize/utils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolStandardize/test_standardizer.py ./rdkit/Chem/MolStandardize/test_standardizer.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolStandardize/test_list.py ./rdkit/Chem/MolStandardize/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolStandardize/tautomer.py ./rdkit/Chem/MolStandardize/tautomer.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolStandardize/standardize.py ./rdkit/Chem/MolStandardize/standardize.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolStandardize/resonance.py ./rdkit/Chem/MolStandardize/resonance.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolStandardize/normalize.py ./rdkit/Chem/MolStandardize/normalize.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolStandardize/metal.py ./rdkit/Chem/MolStandardize/metal.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolStandardize/fragment.py ./rdkit/Chem/MolStandardize/fragment.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolStandardize/errors.py ./rdkit/Chem/MolStandardize/errors.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolStandardize/charge.py ./rdkit/Chem/MolStandardize/charge.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolStandardize/__init__.py ./rdkit/Chem/MolStandardize/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolStandardize/UnitTestMolVS.py ./rdkit/Chem/MolStandardize/UnitTestMolVS.py: updating + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolStandardize/UnitTestMolStandardize.py ./rdkit/Chem/MolStandardize/UnitTestMolStandardize.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolKey/test_list.py ./rdkit/Chem/MolKey/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolKey/__init__.py ./rdkit/Chem/MolKey/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolKey/UnitTestMolKey.py ./rdkit/Chem/MolKey/UnitTestMolKey.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolKey/MolKey.py ./rdkit/Chem/MolKey/MolKey.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolKey/InchiInfo.py ./rdkit/Chem/MolKey/InchiInfo.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolDb/__init__.py ./rdkit/Chem/MolDb/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolDb/Loader_sa.py ./rdkit/Chem/MolDb/Loader_sa.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolDb/Loader_orig.py ./rdkit/Chem/MolDb/Loader_orig.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolDb/Loader.py ./rdkit/Chem/MolDb/Loader.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolDb/FingerprintUtils.py ./rdkit/Chem/MolDb/FingerprintUtils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolCatalog.py ./rdkit/Chem/MolCatalog.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MCS.py ./rdkit/Chem/MCS.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MACCSkeys.py ./rdkit/Chem/MACCSkeys.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Lipinski.py ./rdkit/Chem/Lipinski.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Graphs.py ./rdkit/Chem/Graphs.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/GraphDescriptors.py ./rdkit/Chem/GraphDescriptors.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/FunctionalGroups.py ./rdkit/Chem/FunctionalGroups.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Fragments.py ./rdkit/Chem/Fragments.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/FragmentMatcher.py ./rdkit/Chem/FragmentMatcher.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/FragmentCatalog.py ./rdkit/Chem/FragmentCatalog.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Fraggle/test_list.py ./rdkit/Chem/Fraggle/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Fraggle/__init__.py ./rdkit/Chem/Fraggle/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Fraggle/UnitTestFraggle.py ./rdkit/Chem/Fraggle/UnitTestFraggle.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Fraggle/FraggleSim.py ./rdkit/Chem/Fraggle/FraggleSim.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Fingerprints/test_list.py ./rdkit/Chem/Fingerprints/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Fingerprints/__init__.py ./rdkit/Chem/Fingerprints/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Fingerprints/UnitTestSimScreener.py ./rdkit/Chem/Fingerprints/UnitTestSimScreener.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Fingerprints/UnitTestFingerprints.py ./rdkit/Chem/Fingerprints/UnitTestFingerprints.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Fingerprints/UnitTestDbFpSupplier.py ./rdkit/Chem/Fingerprints/UnitTestDbFpSupplier.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Fingerprints/SimilarityScreener.py ./rdkit/Chem/Fingerprints/SimilarityScreener.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Fingerprints/MolSimilarity.py ./rdkit/Chem/Fingerprints/MolSimilarity.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Fingerprints/FingerprintMols.py ./rdkit/Chem/Fingerprints/FingerprintMols.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Fingerprints/DbFpSupplier.py ./rdkit/Chem/Fingerprints/DbFpSupplier.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Fingerprints/ClusterMols.py ./rdkit/Chem/Fingerprints/ClusterMols.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/FilterCatalog.py ./rdkit/Chem/FilterCatalog.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Features/test_list.py ./rdkit/Chem/Features/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Features/__init__.py ./rdkit/Chem/Features/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Features/UnitTestFeatDirUtilsRD.py ./rdkit/Chem/Features/UnitTestFeatDirUtilsRD.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Features/ShowFeats.py ./rdkit/Chem/Features/ShowFeats.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Features/FeatDirUtilsRD.py ./rdkit/Chem/Features/FeatDirUtilsRD.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/FeatMaps/test_list.py ./rdkit/Chem/FeatMaps/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/FeatMaps/__init__.py ./rdkit/Chem/FeatMaps/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/FeatMaps/UnitTestFeatMapUtils.py ./rdkit/Chem/FeatMaps/UnitTestFeatMapUtils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/FeatMaps/UnitTestFeatMapPoint.py ./rdkit/Chem/FeatMaps/UnitTestFeatMapPoint.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/FeatMaps/UnitTestFeatMapParser.py ./rdkit/Chem/FeatMaps/UnitTestFeatMapParser.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/FeatMaps/UnitTestFeatMap.py ./rdkit/Chem/FeatMaps/UnitTestFeatMap.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/FeatMaps/FeatMaps.py ./rdkit/Chem/FeatMaps/FeatMaps.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/FeatMaps/FeatMapUtils.py ./rdkit/Chem/FeatMaps/FeatMapUtils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/FeatMaps/FeatMapPoint.py ./rdkit/Chem/FeatMaps/FeatMapPoint.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/FeatMaps/FeatMapParser.py ./rdkit/Chem/FeatMaps/FeatMapParser.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/FeatFinderCLI.py ./rdkit/Chem/FeatFinderCLI.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/FastSDMolSupplier.py ./rdkit/Chem/FastSDMolSupplier.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/EnumerateStereoisomers.py ./rdkit/Chem/EnumerateStereoisomers.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/EnumerateHeterocycles.py ./rdkit/Chem/EnumerateHeterocycles.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/EState/test_list.py ./rdkit/Chem/EState/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/EState/__init__.py ./rdkit/Chem/EState/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/EState/UnitTestVSA.py ./rdkit/Chem/EState/UnitTestVSA.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/EState/UnitTestTypes.py ./rdkit/Chem/EState/UnitTestTypes.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/EState/UnitTestFingerprints.py ./rdkit/Chem/EState/UnitTestFingerprints.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/EState/UnitTestEState.py ./rdkit/Chem/EState/UnitTestEState.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/EState/Fingerprinter.py ./rdkit/Chem/EState/Fingerprinter.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/EState/EState_VSA.py ./rdkit/Chem/EState/EState_VSA.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/EState/EState.py ./rdkit/Chem/EState/EState.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/EState/AtomTypes.py ./rdkit/Chem/EState/AtomTypes.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Draw/test_list.py ./rdkit/Chem/Draw/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Draw/spingCanvas.py ./rdkit/Chem/Draw/spingCanvas.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Draw/qtCanvas.py ./rdkit/Chem/Draw/qtCanvas.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Draw/mplCanvas.py ./rdkit/Chem/Draw/mplCanvas.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Draw/canvasbase.py ./rdkit/Chem/Draw/canvasbase.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Draw/cairoCanvas.py ./rdkit/Chem/Draw/cairoCanvas.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Draw/aggCanvas.py ./rdkit/Chem/Draw/aggCanvas.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Draw/__init__.py ./rdkit/Chem/Draw/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Draw/UnitTestSimilarityMaps.py ./rdkit/Chem/Draw/UnitTestSimilarityMaps.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Draw/UnitTestIPython.py ./rdkit/Chem/Draw/UnitTestIPython.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Draw/UnitTestDraw.py ./rdkit/Chem/Draw/UnitTestDraw.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Draw/SimilarityMaps.py ./rdkit/Chem/Draw/SimilarityMaps.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Draw/MolDrawing.py ./rdkit/Chem/Draw/MolDrawing.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Draw/InteractiveRenderer.py ./rdkit/Chem/Draw/InteractiveRenderer.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Draw/IPythonConsole.py ./rdkit/Chem/Draw/IPythonConsole.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Descriptors3D.py ./rdkit/Chem/Descriptors3D.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Descriptors.py ./rdkit/Chem/Descriptors.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/DSViewer.py ./rdkit/Chem/DSViewer.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Crippen.py ./rdkit/Chem/Crippen.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/ChemicalForceFields.py ./rdkit/Chem/ChemicalForceFields.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/ChemicalFeatures.py ./rdkit/Chem/ChemicalFeatures.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/ChemUtils/test_list.py ./rdkit/Chem/ChemUtils/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/ChemUtils/__init__.py ./rdkit/Chem/ChemUtils/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/ChemUtils/UnitTestSDFToCSV.py ./rdkit/Chem/ChemUtils/UnitTestSDFToCSV.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/ChemUtils/UnitTestAlignDepict.py ./rdkit/Chem/ChemUtils/UnitTestAlignDepict.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/ChemUtils/TemplateExpand.py ./rdkit/Chem/ChemUtils/TemplateExpand.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/ChemUtils/SDFToCSV.py ./rdkit/Chem/ChemUtils/SDFToCSV.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/ChemUtils/DescriptorUtilities.py ./rdkit/Chem/ChemUtils/DescriptorUtilities.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/ChemUtils/BulkTester.py ./rdkit/Chem/ChemUtils/BulkTester.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/ChemUtils/AlignDepict.py ./rdkit/Chem/ChemUtils/AlignDepict.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/BuildFragmentCatalog.py ./rdkit/Chem/BuildFragmentCatalog.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/BRICS.py ./rdkit/Chem/BRICS.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/AtomPairs/test_list.py ./rdkit/Chem/AtomPairs/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/AtomPairs/__init__.py ./rdkit/Chem/AtomPairs/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/AtomPairs/Utils.py ./rdkit/Chem/AtomPairs/Utils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/AtomPairs/UnitTestDescriptors.py ./rdkit/Chem/AtomPairs/UnitTestDescriptors.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/AtomPairs/Torsions.py ./rdkit/Chem/AtomPairs/Torsions.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/AtomPairs/Sheridan.py ./rdkit/Chem/AtomPairs/Sheridan.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/AtomPairs/Pairs.py ./rdkit/Chem/AtomPairs/Pairs.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/AllChem.py ./rdkit/Chem/AllChem.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Avalon/__init__.py ./rdkit/Avalon/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./build_support/pkg_version.py ./build_support/pkg_version.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Web/RDExtras/MolImage.py ./Web/RDExtras/MolImage.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Web/RDExtras/MolDepict.py ./Web/RDExtras/MolDepict.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Scripts/run_python_tests.py ./Scripts/run_python_tests.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Scripts/PythonFormat.py ./Scripts/PythonFormat.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Scripts/FeatFinderCLI.py ./Scripts/FeatFinderCLI.py: updating + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Regress/Scripts/timings.py ./Regress/Scripts/timings.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Regress/Scripts/new_timings.py ./Regress/Scripts/new_timings.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Regress/Scripts/fingerprint_screenout.py ./Regress/Scripts/fingerprint_screenout.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Regress/Scripts/chiral_embed.py ./Regress/Scripts/chiral_embed.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Projects/test_list.py ./Projects/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Projects/DbCLI/test_list.py ./Projects/DbCLI/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Projects/DbCLI/TestDbCLI.py ./Projects/DbCLI/TestDbCLI.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Projects/DbCLI/SearchDb.py ./Projects/DbCLI/SearchDb.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Projects/DbCLI/CreateDb.py ./Projects/DbCLI/CreateDb.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./External/pymol/modules/pymol/rpc.py ./External/pymol/modules/pymol/rpc.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./External/YAeHMOP/Wrap/testEHTTools.py ./External/YAeHMOP/Wrap/testEHTTools.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./External/INCHI-API/python/noinchi.py ./External/INCHI-API/python/noinchi.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./External/INCHI-API/python/inchi.py ./External/INCHI-API/python/inchi.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./External/FreeSASA/Wrap/testFreeSASA.py ./External/FreeSASA/Wrap/testFreeSASA.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./External/CoordGen/Wrap/testCoordGen.py ./External/CoordGen/Wrap/testCoordGen.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./External/AvalonTools/test_list.py ./External/AvalonTools/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./External/AvalonTools/Wrap/test_list.py ./External/AvalonTools/Wrap/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./External/AvalonTools/Wrap/testAvalonTools.py ./External/AvalonTools/Wrap/testAvalonTools.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Docs/Book_jp/conf.py ./Docs/Book_jp/conf.py: updating + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Docs/Book/exts/extapi.py ./Docs/Book/exts/extapi.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Docs/Book/data/test_multi_colours.py ./Docs/Book/data/test_multi_colours.py: updating + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Docs/Book/conf.py ./Docs/Book/conf.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Data/SmartsLib/tests/bench2.py ./Data/SmartsLib/tests/bench2.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Data/Pains/test_data/run_tests.py ./Data/Pains/test_data/run_tests.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Data/Fonts/font_dumper.py ./Data/Fonts/font_dumper.py: updating + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Data/DTDs/validate.py ./Data/DTDs/validate.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/pzc/p_con.py ./Contrib/pzc/p_con.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/mmpa/test_rfrag.py ./Contrib/mmpa/test_rfrag.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/mmpa/test_list.py ./Contrib/mmpa/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/mmpa/search_mmp_db.py ./Contrib/mmpa/search_mmp_db.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/mmpa/rfrag.py ./Contrib/mmpa/rfrag.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/mmpa/mol_transform.py ./Contrib/mmpa/mol_transform.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/mmpa/indexing.py ./Contrib/mmpa/indexing.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/mmpa/create_mmp_db.py ./Contrib/mmpa/create_mmp_db.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/mmpa/cansmirk.py ./Contrib/mmpa/cansmirk.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/fraggle/rdkit_tversky.py ./Contrib/fraggle/rdkit_tversky.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/fraggle/fraggle.py ./Contrib/fraggle/fraggle.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/fraggle/cxn_tversky.py ./Contrib/fraggle/cxn_tversky.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/fraggle/atomcontrib.py ./Contrib/fraggle/atomcontrib.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/SA_Score/sascorer.py ./Contrib/SA_Score/sascorer.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/SA_Score/UnitTestSAScore.py ./Contrib/SA_Score/UnitTestSAScore.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/RxnRoleAssignment/utils.py ./Contrib/RxnRoleAssignment/utils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/RxnRoleAssignment/identifyReactants.py ./Contrib/RxnRoleAssignment/identifyReactants.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/RxnRoleAssignment/__init__.py ./Contrib/RxnRoleAssignment/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/PBF/pbf.py ./Contrib/PBF/pbf.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/NP_Score/npscorer.py ./Contrib/NP_Score/npscorer.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/NIBRSubstructureFilters/assignSubstructureFilters.py ./Contrib/NIBRSubstructureFilters/assignSubstructureFilters.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/MolVS/molvs_cli.py ./Contrib/MolVS/molvs_cli.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/M_Kossner/Frames.py ./Contrib/M_Kossner/Frames.py: updating + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/LEF/DistancePredict.py ./Contrib/LEF/DistancePredict.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/LEF/DistancePlot.py ./Contrib/LEF/DistancePlot.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/LEF/CreateFps.py ./Contrib/LEF/CreateFps.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/LEF/ClusterFps.py ./Contrib/LEF/ClusterFps.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/LEF/AddLabels.py ./Contrib/LEF/AddLabels.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/IFG/ifg.py ./Contrib/IFG/ifg.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/Glare/glare.py ./Contrib/Glare/glare.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/FreeWilson/test/test_freewilson.py ./Contrib/FreeWilson/test/test_freewilson.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/FreeWilson/setup.py ./Contrib/FreeWilson/setup.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/FreeWilson/freewilson.py ./Contrib/FreeWilson/freewilson.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/Fastcluster/testdata/sdf2smi.py ./Contrib/Fastcluster/testdata/sdf2smi.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/Fastcluster/fastcluster.py ./Contrib/Fastcluster/fastcluster.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/ConformerParser/test_list.py ./Contrib/ConformerParser/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/ConformerParser/Wrap/test_list.py ./Contrib/ConformerParser/Wrap/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/ConformerParser/Wrap/testConformerParser.py ./Contrib/ConformerParser/Wrap/testConformerParser.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/ChiralPairs/ChiralDescriptors.py ./Contrib/ChiralPairs/ChiralDescriptors.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/CalcLigRMSD/CalcLigRMSD.py ./Contrib/CalcLigRMSD/CalcLigRMSD.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/AtomAtomSimilarity/AtomAtomPathSimilarity.py ./Contrib/AtomAtomSimilarity/AtomAtomPathSimilarity.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/cmake/Modules/fixup_coverage.py ./Code/cmake/Modules/fixup_coverage.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/SimDivPickers/Wrap/testPickers.py ./Code/SimDivPickers/Wrap/testPickers.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/SimDivPickers/Wrap/testMaxMin.py ./Code/SimDivPickers/Wrap/testMaxMin.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/Numerics/Alignment/Wrap/testAlignment.py ./Code/Numerics/Alignment/Wrap/testAlignment.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/MinimalLib/simple.py ./Code/MinimalLib/simple.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/ML/InfoTheory/Wrap/testRanker.py ./Code/ML/InfoTheory/Wrap/testRanker.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/JavaWrappers/parse_doxy_html.py ./Code/JavaWrappers/parse_doxy_html.py: updating + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/JavaWrappers/make_templates.py ./Code/JavaWrappers/make_templates.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Wrap/test_data/do_smiles.py ./Code/GraphMol/Wrap/test_data/do_smiles.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Wrap/test_data/do_smiles.bomb.py ./Code/GraphMol/Wrap/test_data/do_smiles.bomb.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Wrap/test_cdxml.py ./Code/GraphMol/Wrap/test_cdxml.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Wrap/testTrajectory.py ./Code/GraphMol/Wrap/testTrajectory.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Wrap/testThreads.py ./Code/GraphMol/Wrap/testThreads.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Wrap/testSGroups.py ./Code/GraphMol/Wrap/testSGroups.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Wrap/testPropertyLists.py ./Code/GraphMol/Wrap/testPropertyLists.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Wrap/testMultithreadedMolSupplier.py ./Code/GraphMol/Wrap/testMultithreadedMolSupplier.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Wrap/testConformer.py ./Code/GraphMol/Wrap/testConformer.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Wrap/rough_test.py ./Code/GraphMol/Wrap/rough_test.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/UnitTestQueryMol.py ./Code/GraphMol/UnitTestQueryMol.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/TautomerQuery/Wrap/rough_test.py ./Code/GraphMol/TautomerQuery/Wrap/rough_test.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/SubstructLibrary/Wrap/rough_test.py ./Code/GraphMol/SubstructLibrary/Wrap/rough_test.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Substruct/UnitTestSubstruct.py ./Code/GraphMol/Substruct/UnitTestSubstruct.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/StructChecker/Wrap/rough_test.py ./Code/GraphMol/StructChecker/Wrap/rough_test.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/ShapeHelpers/Wrap/testShapeHelpers.py ./Code/GraphMol/ShapeHelpers/Wrap/testShapeHelpers.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/ScaffoldNetwork/Wrap/testScaffoldNetwork.py ./Code/GraphMol/ScaffoldNetwork/Wrap/testScaffoldNetwork.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/ScaffoldNetwork/Wrap/testPickleScaffoldNetwork.py ./Code/GraphMol/ScaffoldNetwork/Wrap/testPickleScaffoldNetwork.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/SLNParse/Wrap/testSLN.py ./Code/GraphMol/SLNParse/Wrap/testSLN.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/ReducedGraphs/Wrap/testReducedGraphs.py ./Code/GraphMol/ReducedGraphs/Wrap/testReducedGraphs.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/RGroupDecomposition/Wrap/test_rgroups.py ./Code/GraphMol/RGroupDecomposition/Wrap/test_rgroups.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/PartialCharges/Wrap/testPartialCharges.py ./Code/GraphMol/PartialCharges/Wrap/testPartialCharges.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/MolTransforms/Wrap/testMolTransforms.py ./Code/GraphMol/MolTransforms/Wrap/testMolTransforms.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/MolStandardize/Wrap/testMolStandardize.py ./Code/GraphMol/MolStandardize/Wrap/testMolStandardize.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/MolInterchange/Wrap/testMolInterchange.py ./Code/GraphMol/MolInterchange/Wrap/testMolInterchange.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/MolHash/Wrap/testMolHash.py ./Code/GraphMol/MolHash/Wrap/testMolHash.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/MolEnumerator/Wrap/rough_test.py ./Code/GraphMol/MolEnumerator/Wrap/rough_test.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/MolDraw2D/update_hash_codes.py ./Code/GraphMol/MolDraw2D/update_hash_codes.py: updating + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/MolDraw2D/test_dir/test_rdkit_draw.py ./Code/GraphMol/MolDraw2D/test_dir/test_rdkit_draw.py: updating + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/MolDraw2D/side_by_side_images.py ./Code/GraphMol/MolDraw2D/side_by_side_images.py: updating + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/MolDraw2D/Wrap/testMolDraw2D.py ./Code/GraphMol/MolDraw2D/Wrap/testMolDraw2D.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/MolDraw2D/Qt/Wrap/testMolDraw2DQt.py ./Code/GraphMol/MolDraw2D/Qt/Wrap/testMolDraw2DQt.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/MolChemicalFeatures/Wrap/testChemicalFeatures.py ./Code/GraphMol/MolChemicalFeatures/Wrap/testChemicalFeatures.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/MolCatalog/Wrap/rough_test.py ./Code/GraphMol/MolCatalog/Wrap/rough_test.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/MolAlign/Wrap/testMolAlign.py ./Code/GraphMol/MolAlign/Wrap/testMolAlign.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/MMPA/Wrap/testMMPA.py ./Code/GraphMol/MMPA/Wrap/testMMPA.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/FragCatalog/Wrap/rough_test.py ./Code/GraphMol/FragCatalog/Wrap/rough_test.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/ForceFieldHelpers/Wrap/testHelpers.py ./Code/GraphMol/ForceFieldHelpers/Wrap/testHelpers.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Fingerprints/Wrap/testMHFP.py ./Code/GraphMol/Fingerprints/Wrap/testMHFP.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Fingerprints/Wrap/testGenerators.py ./Code/GraphMol/Fingerprints/Wrap/testGenerators.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/FilterCatalog/update_pains.py ./Code/GraphMol/FilterCatalog/update_pains.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/FilterCatalog/Wrap/rough_test.py ./Code/GraphMol/FilterCatalog/Wrap/rough_test.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/FileParsers/mol.py ./Code/GraphMol/FileParsers/mol.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/FMCS/Wrap/testFMCS.py ./Code/GraphMol/FMCS/Wrap/testFMCS.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/DistGeomHelpers/Wrap/testDistGeom.py ./Code/GraphMol/DistGeomHelpers/Wrap/testDistGeom.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/DetermineBonds/Wrap/testDetermineBonds.py ./Code/GraphMol/DetermineBonds/Wrap/testDetermineBonds.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Descriptors/test_data/pmi.py ./Code/GraphMol/Descriptors/test_data/pmi.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Descriptors/test3D_old.py ./Code/GraphMol/Descriptors/test3D_old.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Descriptors/test3D.py ./Code/GraphMol/Descriptors/test3D.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Descriptors/Wrap/testMolDescriptors.py ./Code/GraphMol/Descriptors/Wrap/testMolDescriptors.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Descriptors/Wrap/test3D.py ./Code/GraphMol/Descriptors/Wrap/test3D.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Deprotect/Wrap/rough_test.py ./Code/GraphMol/Deprotect/Wrap/rough_test.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Depictor/Wrap/testDepictor.py ./Code/GraphMol/Depictor/Wrap/testDepictor.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/ChemReactions/Wrap/testSanitize.py ./Code/GraphMol/ChemReactions/Wrap/testSanitize.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/ChemReactions/Wrap/testReactionWrapper.py ./Code/GraphMol/ChemReactions/Wrap/testReactionWrapper.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/ChemReactions/Wrap/testEnumerations.py ./Code/GraphMol/ChemReactions/Wrap/testEnumerations.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/CIPLabeler/Wrap/pyCIPLabelsValidation.py ./Code/GraphMol/CIPLabeler/Wrap/pyCIPLabelsValidation.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/CIPLabeler/Wrap/pyCIPLabelWrapTest.py ./Code/GraphMol/CIPLabeler/Wrap/pyCIPLabelWrapTest.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Abbreviations/Wrap/testAbbreviations.py ./Code/GraphMol/Abbreviations/Wrap/testAbbreviations.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/Geometry/Wrap/testGeometry.py ./Code/Geometry/Wrap/testGeometry.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/ForceField/Wrap/testConstraints.py ./Code/ForceField/Wrap/testConstraints.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/DistGeom/Wrap/rough_test.py ./Code/DistGeom/Wrap/rough_test.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/Demos/boost/smartPtrsAndIters/test.py ./Code/Demos/boost/smartPtrsAndIters/test.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/Demos/boost/smartPtrsAndIters/setup.py ./Code/Demos/boost/smartPtrsAndIters/setup.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/Demos/boost/python_objs/test.py ./Code/Demos/boost/python_objs/test.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/Demos/boost/python_objs/setup.py ./Code/Demos/boost/python_objs/setup.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/Demos/boost/overloads/test.py ./Code/Demos/boost/overloads/test.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/Demos/boost/overloads/setup.py ./Code/Demos/boost/overloads/setup.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/Demos/boost/numpy/test.py ./Code/Demos/boost/numpy/test.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/Demos/boost/numpy/setup.py ./Code/Demos/boost/numpy/setup.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/Demos/boost/cross_module/test.py ./Code/Demos/boost/cross_module/test.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/Demos/boost/cross_module/setup.py ./Code/Demos/boost/cross_module/setup.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/Demos/boost/cross_mod_err/test.py ./Code/Demos/boost/cross_mod_err/test.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/Demos/boost/cross_mod_err/setup.py ./Code/Demos/boost/cross_mod_err/setup.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/Demos/boost/EBV_err/test.py ./Code/Demos/boost/EBV_err/test.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/Demos/boost/EBV_err/setup.py ./Code/Demos/boost/EBV_err/setup.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/Demos/RDKit/MPI/rdkpympi.py ./Code/Demos/RDKit/MPI/rdkpympi.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/DataStructs/Wrap/testSparseIntVect.py ./Code/DataStructs/Wrap/testSparseIntVect.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/DataStructs/Wrap/testFPB.py ./Code/DataStructs/Wrap/testFPB.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/DataStructs/Wrap/testDiscreteValueVect.py ./Code/DataStructs/Wrap/testDiscreteValueVect.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/DataStructs/Wrap/testBV.py ./Code/DataStructs/Wrap/testBV.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/DataManip/MetricMatrixCalc/Wrap/testMatricCalc.py ./Code/DataManip/MetricMatrixCalc/Wrap/testMatricCalc.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/ChemicalFeatures/Wrap/testFeatures.py ./Code/ChemicalFeatures/Wrap/testFeatures.py: no change + cp -p Code/PgSQL/rdkit/README.md Code/PgSQL/rdkit/README_PgSQL.md + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.foFUON + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd rdkit-Release_2023_03_2 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX ++ /usr/bin/pg_server_config --includedir-server + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -D RDK_INSTALL_INTREE=OFF -D CMAKE_BUILD_TYPE=Release -D CMAKE_SKIP_RPATH:BOOL=ON -D RDK_BUILD_INCHI_SUPPORT:BOOL=ON -D RDK_BUILD_THREADSAFE_SSS:BOOL=OFF -D RDK_BUILD_CAIRO_SUPPORT:BOOL=ON -D RDK_BUILD_DESCRIPTORS3D:BOOL=OFF -D RDK_BUILD_COORDGEN_SUPPORT:BOOL=OFF -D RDK_BUILD_MOLINTERCHANGE_SUPPORT:BOOL=OFF -D RDK_OPTIMIZE_POPCNT:BOOL=OFF -D DRDK_BUILD_CPP_TESTS:BOOL=ON -D RDK_BUILD_THREADSAFE_SSS:BOOL=ON -D RDK_BUILD_PGSQL:BOOL=ON -D PostgreSQL_ROOT:PATH=/usr -D PostgreSQL_TYPE_INCLUDE_DIR:PATH=/usr/include/pgsql/server -D RDK_PGSQL_STATIC:BOOL=OFF -D RDK_INSTALL_STATIC_LIBS:BOOL=OFF -D RDK_USE_FLEXBISON:BOOL=OFF -D RDK_TEST_MULTITHREADED:BOOL=ON -D PYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3 -D RDK_BOOST_PYTHON3_NAME=python311 -D CATCH_DIR:FILEPATH=/usr/include/catch2 -D RDK_USE_URF:BOOL=OFF -D RDK_INSTALL_COMIC_FONTS:BOOL=OFF -D RDK_BUILD_SWIG_JAVA_WRAPPER:BOOL=OFF -D RDK_BUILD_SWIG_WRAPPERS=OFF CMake Warning: No source or binary directory provided. Both will be assumed to be the same as the current working directory, but note that this warning will become a fatal error in future CMake releases. -- The C compiler identification is GNU 13.1.1 -- The CXX compiler identification is GNU 13.1.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Catch2: /usr/include/catch2 CATCH: /usr/include/catch2 -- Found Inchi: /usr/lib64/libinchi.so -- Found PythonInterp: /usr/bin/python3 (found version "3.11.4") -- Found PythonLibs: /usr/lib64/libpython3.11.so (found version "3.11.4") Python Install directory /usr/lib64/python3.11/site-packages PYTHON Py_ENABLE_SHARED: 1 PYTHON USING LINK LINE: -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g nbval not found, disabling the jupyter tests -- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0") -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Found Boost: /usr/lib64/cmake/Boost-1.78.0/BoostConfig.cmake (found suitable version "1.78.0", minimum required is "1.58.0") found components: system serialization iostreams CMake Warning (dev) at CMakeLists.txt:453 (find_package): Policy CMP0074 is not set: find_package uses _ROOT variables. Run "cmake --help-policy CMP0074" for policy details. Use the cmake_policy command to set the policy and suppress this warning. CMake variable PostgreSQL_ROOT is set to: /usr For compatibility, CMake is ignoring the variable. This warning is for project developers. Use -Wno-dev to suppress it. -- Found PostgreSQL: /usr/lib64/libpq.so (found version "15.1") == Using strict rotor definition -- Found Boost: /usr/lib64/cmake/Boost-1.78.0/BoostConfig.cmake (found suitable version "1.78.0", minimum required is "1.58.0") found components: system iostreams -- maeparser include dir set as '/usr/include' -- maeparser libraries set as '/usr/lib64/libmaeparser.so' -- Found maeparser: /usr/include -- Found Boost: /usr/lib64/cmake/Boost-1.78.0/BoostConfig.cmake (found suitable version "1.78.0", minimum required is "1.58.0") found components: iostreams -- Found Boost: /usr/lib64/cmake/Boost-1.78.0/BoostConfig.cmake (found suitable version "1.78.0", minimum required is "1.58.0") found components: system iostreams -- Found ZLIB: /usr/lib64/libz.so (found version "1.2.13") -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.0") -- Found Cairo: /usr/include/cairo -- Found Freetype: /usr/lib64/libfreetype.so (found version "2.13.0") -- Found Boost: /usr/lib64/cmake/Boost-1.78.0/BoostConfig.cmake (found suitable version "1.78.0", minimum required is "1.58.0") found components: program_options CMake Warning (dev) at Code/PgSQL/rdkit/CMakeLists.txt:23 (find_package): Policy CMP0074 is not set: find_package uses _ROOT variables. Run "cmake --help-policy CMP0074" for policy details. Use the cmake_policy command to set the policy and suppress this warning. CMake variable PostgreSQL_ROOT is set to: /usr For compatibility, CMake is ignoring the variable. This warning is for project developers. Use -Wno-dev to suppress it. postgres: /usr/include;/usr/include/pgsql/server -- Configuring done (1.2s) -- Generating done (0.4s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP DRDK_BUILD_CPP_TESTS INCLUDE_INSTALL_DIR LIB_INSTALL_DIR SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/rdkit-Release_2023_03_2 + /usr/bin/cmake --build . -j2 --verbose /usr/bin/cmake -S/builddir/build/BUILD/rdkit-Release_2023_03_2 -B/builddir/build/BUILD/rdkit-Release_2023_03_2 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/rdkit-Release_2023_03_2/CMakeFiles /builddir/build/BUILD/rdkit-Release_2023_03_2//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f External/catch/CMakeFiles/catch.dir/build.make External/catch/CMakeFiles/catch.dir/depend /usr/bin/gmake -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/External/catch /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/External/catch /builddir/build/BUILD/rdkit-Release_2023_03_2/External/catch/CMakeFiles/catch.dir/DependInfo.cmake --color= gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2023_03_2/External/INCHI-API/CMakeFiles/inchi_support.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f External/catch/CMakeFiles/catch.dir/build.make External/catch/CMakeFiles/catch.dir/build gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' gmake[2]: Nothing to be done for 'External/catch/CMakeFiles/catch.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2/External/INCHI-API && /usr/bin/cmake -E copy /builddir/build/BUILD/rdkit-Release_2023_03_2/External/INCHI-API/python/inchi.py /builddir/build/BUILD/rdkit-Release_2023_03_2/rdkit/Chem/inchi.py [ 0%] Built target catch /usr/bin/gmake -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/depend gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/CMakeFiles/RDGeneral.dir/DependInfo.cmake --color= [ 0%] Built target inchi_support /usr/bin/gmake -f 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-DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/RDGeneral/CMakeFiles/RDGeneral.dir/utils.cpp.o -MF CMakeFiles/RDGeneral.dir/utils.cpp.o.d -o CMakeFiles/RDGeneral.dir/utils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/utils.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/utils.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 1%] Linking CXX shared library ../../lib/libRDKitga.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/External/GA && /usr/bin/cmake -E cmake_link_script CMakeFiles/ga.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitga.so.1 -o ../../lib/libRDKitga.so.1.2023.03.2 CMakeFiles/ga.dir/ga/StringChromosome.cpp.o CMakeFiles/ga.dir/ga/Chromosome.cpp.o CMakeFiles/ga.dir/ga/IntegerStringChromosomePolicy.cpp.o CMakeFiles/ga.dir/ga/BinaryStringChromosomePolicy.cpp.o CMakeFiles/ga.dir/util/RandomUtil.cpp.o CMakeFiles/ga.dir/util/Util.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/External/GA && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitga.so.1.2023.03.2 ../../lib/libRDKitga.so.1 ../../lib/libRDKitga.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 1%] Built target ga /usr/bin/gmake -f Code/RDGeneral/CMakeFiles/rdkitCatch.dir/build.make Code/RDGeneral/CMakeFiles/rdkitCatch.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/CMakeFiles/rdkitCatch.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/RDGeneral/CMakeFiles/rdkitCatch.dir/build.make Code/RDGeneral/CMakeFiles/rdkitCatch.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 1%] Building CXX object Code/RDGeneral/CMakeFiles/rdkitCatch.dir/catch_main.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdkitCatch_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/RDGeneral/CMakeFiles/rdkitCatch.dir/catch_main.cpp.o -MF CMakeFiles/rdkitCatch.dir/catch_main.cpp.o.d -o CMakeFiles/rdkitCatch.dir/catch_main.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/catch_main.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/catch_main.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 1%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/RDGeneralExceptions.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/RDGeneral/CMakeFiles/RDGeneral.dir/RDGeneralExceptions.cpp.o -MF CMakeFiles/RDGeneral.dir/RDGeneralExceptions.cpp.o.d -o CMakeFiles/RDGeneral.dir/RDGeneralExceptions.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/RDGeneralExceptions.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/RDGeneralExceptions.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/RDLog.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/RDGeneral/CMakeFiles/RDGeneral.dir/RDLog.cpp.o -MF CMakeFiles/RDGeneral.dir/RDLog.cpp.o.d -o CMakeFiles/RDGeneral.dir/RDLog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/RDLog.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/RDLog.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/RDGeneral/CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o -MF CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o.d -o CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/LocaleSwitcher.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/LocaleSwitcher.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/versions.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/RDGeneral/CMakeFiles/RDGeneral.dir/versions.cpp.o -MF CMakeFiles/RDGeneral.dir/versions.cpp.o.d -o CMakeFiles/RDGeneral.dir/versions.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/versions.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/versions.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 2%] Linking CXX shared library ../../lib/libRDKitRDGeneral.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDGeneral.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitRDGeneral.so.1 -o ../../lib/libRDKitRDGeneral.so.1.2023.03.2 CMakeFiles/RDGeneral.dir/Invariant.cpp.o CMakeFiles/RDGeneral.dir/types.cpp.o CMakeFiles/RDGeneral.dir/utils.cpp.o CMakeFiles/RDGeneral.dir/RDGeneralExceptions.cpp.o CMakeFiles/RDGeneral.dir/RDLog.cpp.o CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o CMakeFiles/RDGeneral.dir/versions.cpp.o -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDGeneral.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1 ../../lib/libRDKitRDGeneral.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 2%] Built target RDGeneral /usr/bin/gmake -f Code/RDStreams/CMakeFiles/RDStreams.dir/build.make Code/RDStreams/CMakeFiles/RDStreams.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDStreams /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDStreams /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDStreams/CMakeFiles/RDStreams.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/RDStreams/CMakeFiles/RDStreams.dir/build.make Code/RDStreams/CMakeFiles/RDStreams.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 2%] Building CXX object Code/RDStreams/CMakeFiles/RDStreams.dir/streams.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDStreams && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_RDSTREAMS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDStreams_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/RDStreams/CMakeFiles/RDStreams.dir/streams.cpp.o -MF CMakeFiles/RDStreams.dir/streams.cpp.o.d -o CMakeFiles/RDStreams.dir/streams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDStreams/streams.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDStreams/streams.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 2%] Linking CXX shared library ../../lib/libRDKitRDStreams.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDStreams && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDStreams.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitRDStreams.so.1 -o ../../lib/libRDKitRDStreams.so.1.2023.03.2 CMakeFiles/RDStreams.dir/streams.cpp.o /usr/lib64/libboost_iostreams.so.1.78.0 cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDStreams && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDStreams.so.1.2023.03.2 ../../lib/libRDKitRDStreams.so.1 ../../lib/libRDKitRDStreams.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 2%] Built target RDStreams /usr/bin/gmake -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/CMakeFiles/testMatrices.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 2%] Building CXX object Code/Numerics/CMakeFiles/testMatrices.dir/testMatrices.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/Numerics/CMakeFiles/testMatrices.dir/testMatrices.cpp.o -MF CMakeFiles/testMatrices.dir/testMatrices.cpp.o.d -o CMakeFiles/testMatrices.dir/testMatrices.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/testMatrices.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/testMatrices.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 2%] Linking CXX executable testMatrices cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMatrices.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testMatrices.dir/testMatrices.cpp.o -o testMatrices ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 2%] Built target testMatrices /usr/bin/gmake -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Catalogs /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Catalogs 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/Catalogs/CMakeFiles/Catalogs.dir/Catalog.cpp.o -MF CMakeFiles/Catalogs.dir/Catalog.cpp.o.d -o CMakeFiles/Catalogs.dir/Catalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Catalogs/Catalog.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Catalogs/Catalog.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 2%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogParams.cpp.o cd 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-I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o -MF CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o.d -o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Catalogs/CatalogEntry.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Catalogs/CatalogEntry.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 2%] Linking CXX shared library ../../lib/libRDKitCatalogs.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Catalogs && /usr/bin/cmake -E cmake_link_script CMakeFiles/Catalogs.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitCatalogs.so.1 -o ../../lib/libRDKitCatalogs.so.1.2023.03.2 CMakeFiles/Catalogs.dir/Catalog.cpp.o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Catalogs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../lib/libRDKitCatalogs.so.1 ../../lib/libRDKitCatalogs.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 2%] Built target Catalogs /usr/bin/gmake -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Query /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Query 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-grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/Query/CMakeFiles/testQuery.dir/test.cpp.o -MF CMakeFiles/testQuery.dir/test.cpp.o.d -o CMakeFiles/testQuery.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Query/test.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Query/test.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 2%] Linking CXX executable testQuery cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Query && /usr/bin/cmake -E cmake_link_script CMakeFiles/testQuery.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testQuery.dir/test.cpp.o -o testQuery ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 3%] Linking CXX shared library librdkitCatch.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdkitCatch.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC 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Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataManip/MetricMatrixCalc && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o -MF CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o.d -o CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataManip/MetricMatrixCalc/testMatCalc.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataManip/MetricMatrixCalc/testMatCalc.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 3%] Linking CXX executable testMatCalc cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataManip/MetricMatrixCalc && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMatCalc.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o -o testMatCalc ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 3%] Built target testMatCalc /usr/bin/gmake -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 3%] Building C object Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hc.c.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/Cluster/Murtagh && /usr/bin/gcc -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_HC_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Dhc_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hc.c.o -MF CMakeFiles/hc.dir/hc.c.o.d -o CMakeFiles/hc.dir/hc.c.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/Cluster/Murtagh/hc.c [ 3%] Building C object Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hcdriver.c.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/Cluster/Murtagh && /usr/bin/gcc -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_HC_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Dhc_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hcdriver.c.o -MF CMakeFiles/hc.dir/hcdriver.c.o.d -o CMakeFiles/hc.dir/hcdriver.c.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/Cluster/Murtagh/hcdriver.c [ 3%] Linking C shared library ../../../../lib/libRDKithc.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/Cluster/Murtagh && /usr/bin/cmake -E cmake_link_script CMakeFiles/hc.dir/link.txt --verbose=1 /usr/bin/gcc -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKithc.so.1 -o ../../../../lib/libRDKithc.so.1.2023.03.2 CMakeFiles/hc.dir/hc.c.o CMakeFiles/hc.dir/hcdriver.c.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/Cluster/Murtagh && /usr/bin/cmake -E cmake_symlink_library ../../../../lib/libRDKithc.so.1.2023.03.2 ../../../../lib/libRDKithc.so.1 ../../../../lib/libRDKithc.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 3%] Built target hc /usr/bin/gmake -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 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-DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/BitVect.cpp.o -MF CMakeFiles/DataStructs.dir/BitVect.cpp.o.d -o CMakeFiles/DataStructs.dir/BitVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/BitVect.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/BitVect.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 3%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o -MF CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o.d -o CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/SparseBitVect.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/SparseBitVect.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 3%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD 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CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/ExplicitBitVect.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/ExplicitBitVect.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 4%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/Utils.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/Utils.cpp.o -MF CMakeFiles/DataStructs.dir/Utils.cpp.o.d -o CMakeFiles/DataStructs.dir/Utils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Utils.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Utils.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 4%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/base64.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK 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Code/DataStructs/CMakeFiles/DataStructs.dir/base64.cpp.o -MF CMakeFiles/DataStructs.dir/base64.cpp.o.d -o CMakeFiles/DataStructs.dir/base64.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/base64.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/base64.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 4%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/BitOps.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/BitOps.cpp.o -MF CMakeFiles/DataStructs.dir/BitOps.cpp.o.d -o CMakeFiles/DataStructs.dir/BitOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/BitOps.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/BitOps.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 4%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function 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-I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o -MF CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o.d -o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/DiscreteValueVect.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/DiscreteValueVect.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 4%] Built target rdkitCatch /usr/bin/gmake -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/EigenSolvers /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/EigenSolvers /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 4%] Building CXX object Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/EigenSolvers && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DEigenSolvers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_EIGENSOLVERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o -MF CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o.d -o CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/EigenSolvers/PowerEigenSolver.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/EigenSolvers/PowerEigenSolver.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 4%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/FPBReader.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function 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Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDBoost /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDBoost /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDBoost/CMakeFiles/RDBoost.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 5%] Building CXX object Code/RDBoost/CMakeFiles/RDBoost.dir/Wrap.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDBoost && /usr/bin/g++ 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../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDBoost && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../lib/libRDKitRDBoost.so.1 ../../lib/libRDKitRDBoost.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 5%] Built target RDBoost /usr/bin/gmake -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral 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-grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/RDGeneral/CMakeFiles/testDict.dir/testDict.cpp.o -MF CMakeFiles/testDict.dir/testDict.cpp.o.d -o CMakeFiles/testDict.dir/testDict.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/testDict.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/testDict.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 5%] Linking CXX shared library ../../lib/libRDKitDataStructs.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/DataStructs.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitDataStructs.so.1 -o ../../lib/libRDKitDataStructs.so.1.2023.03.2 CMakeFiles/DataStructs.dir/BitVect.cpp.o CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o CMakeFiles/DataStructs.dir/Utils.cpp.o CMakeFiles/DataStructs.dir/base64.cpp.o CMakeFiles/DataStructs.dir/BitOps.cpp.o CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o CMakeFiles/DataStructs.dir/FPBReader.cpp.o CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1 ../../lib/libRDKitDataStructs.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 5%] Built target DataStructs /usr/bin/gmake -f Code/RDGeneral/CMakeFiles/testRDValue.dir/build.make Code/RDGeneral/CMakeFiles/testRDValue.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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-I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/RDGeneral/CMakeFiles/testRDValue.dir/testRDValue.cpp.o -MF CMakeFiles/testRDValue.dir/testRDValue.cpp.o.d -o CMakeFiles/testRDValue.dir/testRDValue.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/testRDValue.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/testRDValue.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 5%] Linking CXX executable testDict cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDict.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testDict.dir/testDict.cpp.o -o testDict ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 5%] Built target testDict /usr/bin/gmake -f Code/RDGeneral/CMakeFiles/testConcurrentQueue.dir/build.make Code/RDGeneral/CMakeFiles/testConcurrentQueue.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/CMakeFiles/testConcurrentQueue.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f 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-ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testConcurrentQueue.dir/testConcurrentQueue.cpp.o -o testConcurrentQueue ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 5%] Built target testConcurrentQueue /usr/bin/gmake -f Code/RDGeneral/CMakeFiles/dictTestsCatch.dir/build.make Code/RDGeneral/CMakeFiles/dictTestsCatch.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/CMakeFiles/dictTestsCatch.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/RDGeneral/CMakeFiles/dictTestsCatch.dir/build.make Code/RDGeneral/CMakeFiles/dictTestsCatch.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 5%] Building CXX object Code/RDGeneral/CMakeFiles/dictTestsCatch.dir/catch_dict.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/RDGeneral/CMakeFiles/dictTestsCatch.dir/catch_dict.cpp.o -MF CMakeFiles/dictTestsCatch.dir/catch_dict.cpp.o.d -o CMakeFiles/dictTestsCatch.dir/catch_dict.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/catch_dict.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/catch_dict.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 5%] Linking CXX executable testRDValue cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/testRDValue.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testRDValue.dir/testRDValue.cpp.o -o testRDValue ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 5%] Built target testRDValue /usr/bin/gmake -f Code/RDGeneral/CMakeFiles/logTestsCatch.dir/build.make Code/RDGeneral/CMakeFiles/logTestsCatch.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2023_03_2 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dictTestsCatch cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/dictTestsCatch.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/dictTestsCatch.dir/catch_dict.cpp.o -o dictTestsCatch librdkitCatch.so ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 6%] Built target dictTestsCatch /usr/bin/gmake -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDBoost/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDBoost/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/DependInfo.cmake --color= [ 6%] Linking CXX executable logTestsCatch cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/logTestsCatch.dir/link.txt --verbose=1 gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/logTestsCatch.dir/catch_logs.cpp.o -o logTestsCatch librdkitCatch.so ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 6%] Building CXX object Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/RDBase.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDBoost/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdBase_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong 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-Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o -o testDataStructs ../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 6%] Built target testDataStructs /usr/bin/gmake -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs 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-fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testMultiFPB.dir/testMultiFPB.cpp.o -o testMultiFPB ../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 6%] Linking CXX shared module ../../../rdkit/rdBase.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDBoost/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdBase.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong 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Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DataStructs.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DataStructs.cpp.o -MF CMakeFiles/cDataStructs.dir/DataStructs.cpp.o.d -o CMakeFiles/cDataStructs.dir/DataStructs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/DataStructs.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/DataStructs.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 6%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o -MF CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o.d -o CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o -c 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o -MF CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o.d -o CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 7%] Built target rdBase /usr/bin/gmake -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataManip/MetricMatrixCalc/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataManip/MetricMatrixCalc/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 7%] Building CXX object Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataManip/MetricMatrixCalc/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMetricMatrixCalc_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o -MF CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o.d -o CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataManip/MetricMatrixCalc/Wrap/rdMetricMatrixCalc.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataManip/MetricMatrixCalc/Wrap/rdMetricMatrixCalc.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp: In instantiation of 'boost::python::list {anonymous}::BulkDice(const T&, boost::python::list, bool) [with T = RDKit::SparseIntVect]': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:190:16: required from 'static void sparseIntVec_wrapper::wrapOne(const char*) [with IndexType = int]' /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:219:26: required from here /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:77:14: warning: possibly dangling reference to a temporary [-Wdangling-reference] 77 | const T &siv2 = python::extract(sivs[i])(); | ^~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:77:48: note: the temporary was destroyed at the end of the full expression 'boost::python::extract >(boost::python::api::proxy::operator boost::python::api::object() const [with Policies = boost::python::api::item_policies]()).boost::python::extract >::.boost::python::converter::extract_rvalue >::operator()()' 77 | const T &siv2 = python::extract(sivs[i])(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp: In instantiation of 'boost::python::list {anonymous}::BulkTanimoto(const T&, boost::python::list, bool) [with T = RDKit::SparseIntVect]': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:200:16: required from 'static void sparseIntVec_wrapper::wrapOne(const char*) [with IndexType = int]' /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:219:26: required from here /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:90:14: warning: possibly dangling reference to a temporary [-Wdangling-reference] 90 | const T &siv2 = python::extract(sivs[i])(); | ^~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:90:48: note: the temporary was destroyed at the end of the full expression 'boost::python::extract >(boost::python::api::proxy::operator boost::python::api::object() const [with Policies = boost::python::api::item_policies]()).boost::python::extract >::.boost::python::converter::extract_rvalue >::operator()()' 90 | const T &siv2 = python::extract(sivs[i])(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp: In instantiation of 'boost::python::list {anonymous}::BulkTversky(const T&, boost::python::list, double, double, bool) [with T = RDKit::SparseIntVect]': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:211:16: required from 'static void sparseIntVec_wrapper::wrapOne(const char*) [with IndexType = int]' /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:219:26: required from here /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:104:14: warning: possibly dangling reference to a temporary [-Wdangling-reference] 104 | const T &siv2 = python::extract(sivs[i])(); | ^~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:104:48: note: the temporary was destroyed at the end of the full expression 'boost::python::extract >(boost::python::api::proxy::operator boost::python::api::object() const [with Policies = boost::python::api::item_policies]()).boost::python::extract >::.boost::python::converter::extract_rvalue >::operator()()' 104 | const T &siv2 = python::extract(sivs[i])(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp: In instantiation of 'boost::python::list {anonymous}::BulkDice(const T&, boost::python::list, bool) [with T = RDKit::SparseIntVect]': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:190:16: required from 'static void sparseIntVec_wrapper::wrapOne(const char*) [with IndexType = long int]' /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:220:28: required from here /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:77:14: warning: possibly dangling reference to a temporary [-Wdangling-reference] 77 | const T &siv2 = python::extract(sivs[i])(); | ^~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:77:48: note: the temporary was destroyed at the end of the full expression 'boost::python::extract >(boost::python::api::proxy::operator boost::python::api::object() const [with Policies = boost::python::api::item_policies]()).boost::python::extract >::.boost::python::converter::extract_rvalue >::operator()()' 77 | const T &siv2 = python::extract(sivs[i])(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp: In instantiation of 'boost::python::list {anonymous}::BulkTanimoto(const T&, boost::python::list, bool) [with T = RDKit::SparseIntVect]': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:200:16: required from 'static void sparseIntVec_wrapper::wrapOne(const char*) [with IndexType = long int]' /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:220:28: required from here /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:90:14: warning: possibly dangling reference to a temporary [-Wdangling-reference] 90 | const T &siv2 = python::extract(sivs[i])(); | ^~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:90:48: note: the temporary was destroyed at the end of the full expression 'boost::python::extract >(boost::python::api::proxy::operator boost::python::api::object() const [with Policies = boost::python::api::item_policies]()).boost::python::extract >::.boost::python::converter::extract_rvalue >::operator()()' 90 | const T &siv2 = python::extract(sivs[i])(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp: In instantiation of 'boost::python::list {anonymous}::BulkTversky(const T&, boost::python::list, double, double, bool) [with T = RDKit::SparseIntVect]': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:211:16: required from 'static void sparseIntVec_wrapper::wrapOne(const char*) [with IndexType = long int]' /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:220:28: required from here /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:104:14: warning: possibly dangling reference to a temporary [-Wdangling-reference] 104 | const T &siv2 = python::extract(sivs[i])(); | ^~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:104:48: note: the temporary was destroyed at the end of the full expression 'boost::python::extract >(boost::python::api::proxy::operator boost::python::api::object() const [with Policies = boost::python::api::item_policies]()).boost::python::extract >::.boost::python::converter::extract_rvalue >::operator()()' 104 | const T &siv2 = python::extract(sivs[i])(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp: In instantiation of 'boost::python::list {anonymous}::BulkDice(const T&, boost::python::list, bool) [with T = RDKit::SparseIntVect]': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:190:16: required from 'static void sparseIntVec_wrapper::wrapOne(const char*) [with IndexType = unsigned int]' /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:221:27: required from here /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:77:14: warning: possibly dangling reference to a temporary [-Wdangling-reference] 77 | const T &siv2 = python::extract(sivs[i])(); | ^~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:77:48: note: the temporary was destroyed at the end of the full expression 'boost::python::extract >(boost::python::api::proxy::operator boost::python::api::object() const [with Policies = boost::python::api::item_policies]()).boost::python::extract >::.boost::python::converter::extract_rvalue >::operator()()' 77 | const T &siv2 = python::extract(sivs[i])(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp: In instantiation of 'boost::python::list {anonymous}::BulkTanimoto(const T&, boost::python::list, bool) [with T = RDKit::SparseIntVect]': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:200:16: required from 'static void sparseIntVec_wrapper::wrapOne(const char*) [with IndexType = unsigned int]' /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:221:27: required from here /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:90:14: warning: possibly dangling reference to a temporary [-Wdangling-reference] 90 | const T &siv2 = python::extract(sivs[i])(); | ^~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:90:48: note: the temporary was destroyed at the end of the full expression 'boost::python::extract >(boost::python::api::proxy::operator boost::python::api::object() const [with Policies = boost::python::api::item_policies]()).boost::python::extract >::.boost::python::converter::extract_rvalue >::operator()()' 90 | const T &siv2 = python::extract(sivs[i])(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp: In instantiation of 'boost::python::list {anonymous}::BulkTversky(const T&, boost::python::list, double, double, bool) [with T = RDKit::SparseIntVect]': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:211:16: required from 'static void sparseIntVec_wrapper::wrapOne(const char*) [with IndexType = unsigned int]' /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:221:27: required from here /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:104:14: warning: possibly dangling reference to a temporary [-Wdangling-reference] 104 | const T &siv2 = python::extract(sivs[i])(); | ^~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:104:48: note: the temporary was destroyed at the end of the full expression 'boost::python::extract >(boost::python::api::proxy::operator boost::python::api::object() const [with Policies = boost::python::api::item_policies]()).boost::python::extract >::.boost::python::converter::extract_rvalue >::operator()()' 104 | const T &siv2 = python::extract(sivs[i])(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp: In instantiation of 'boost::python::list {anonymous}::BulkDice(const T&, boost::python::list, bool) [with T = RDKit::SparseIntVect]': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:190:16: required from 'static void sparseIntVec_wrapper::wrapOne(const char*) [with IndexType = long unsigned int]' /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:222:29: required from here /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:77:14: warning: possibly dangling reference to a temporary [-Wdangling-reference] 77 | const T &siv2 = python::extract(sivs[i])(); | ^~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:77:48: note: the temporary was destroyed at the end of the full expression 'boost::python::extract >(boost::python::api::proxy::operator boost::python::api::object() const [with Policies = boost::python::api::item_policies]()).boost::python::extract >::.boost::python::converter::extract_rvalue >::operator()()' 77 | const T &siv2 = python::extract(sivs[i])(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp: In instantiation of 'boost::python::list {anonymous}::BulkTanimoto(const T&, boost::python::list, bool) [with T = RDKit::SparseIntVect]': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:200:16: required from 'static void sparseIntVec_wrapper::wrapOne(const char*) [with IndexType = long unsigned int]' /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:222:29: required from here /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:90:14: warning: possibly dangling reference to a temporary [-Wdangling-reference] 90 | const T &siv2 = python::extract(sivs[i])(); | ^~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:90:48: note: the temporary was destroyed at the end of the full expression 'boost::python::extract >(boost::python::api::proxy::operator boost::python::api::object() const [with Policies = boost::python::api::item_policies]()).boost::python::extract >::.boost::python::converter::extract_rvalue >::operator()()' 90 | const T &siv2 = python::extract(sivs[i])(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp: In instantiation of 'boost::python::list {anonymous}::BulkTversky(const T&, boost::python::list, double, double, bool) [with T = RDKit::SparseIntVect]': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:211:16: required from 'static void sparseIntVec_wrapper::wrapOne(const char*) [with IndexType = long unsigned int]' /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:222:29: required from here /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:104:14: warning: possibly dangling reference to a temporary [-Wdangling-reference] 104 | const T &siv2 = python::extract(sivs[i])(); | ^~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:104:48: note: the temporary was destroyed at the end of the full expression 'boost::python::extract >(boost::python::api::proxy::operator boost::python::api::object() const [with Policies = boost::python::api::item_policies]()).boost::python::extract >::.boost::python::converter::extract_rvalue >::operator()()' 104 | const T &siv2 = python::extract(sivs[i])(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ [ 7%] Linking CXX shared module ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataManip/MetricMatrixCalc/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMetricMatrixCalc.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 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-I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o -MF CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o.d -o CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/SimDivPickers/DistPicker.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/SimDivPickers/DistPicker.cpp: Warning: 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CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/SimDivPickers/HierarchicalClusterPicker.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/SimDivPickers/HierarchicalClusterPicker.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 7%] Linking CXX shared library ../../lib/libRDKitSimDivPickers.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/SimDivPickers && /usr/bin/cmake -E cmake_link_script CMakeFiles/SimDivPickers.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitSimDivPickers.so.1 -o ../../lib/libRDKitSimDivPickers.so.1.2023.03.2 CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o ../../lib/libRDKithc.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/SimDivPickers && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitSimDivPickers.so.1.2023.03.2 ../../lib/libRDKitSimDivPickers.so.1 ../../lib/libRDKitSimDivPickers.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 7%] Built target SimDivPickers /usr/bin/gmake -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 7%] Building CXX object Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/Clustering.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/Cluster/Murtagh && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DClustering_EXPORTS -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection 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cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/InfoTheory /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/InfoTheory /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 7%] Building CXX object Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/InfoTheory && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DInfoTheory_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_INFOTHEORY_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS 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-DBOOST_SERIALIZATION_DYN_LINK -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o -MF CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o.d -o CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/Transform2D.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/Transform2D.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 7%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o -MF CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o.d -o CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/Transform3D.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/Transform3D.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 7%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/Geometry/CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o -MF CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o.d -o CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/UniformGrid3D.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/UniformGrid3D.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 7%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o -MF CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o.d -o CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/wrap_BitOps.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/wrap_BitOps.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 8%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/Geometry/CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o -MF CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o.d -o CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/GridUtils.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/GridUtils.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 8%] Linking CXX shared library ../../lib/libRDKitRDGeometryLib.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDGeometryLib.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitRDGeometryLib.so.1 -o ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 CMakeFiles/RDGeometryLib.dir/point.cpp.o CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o ../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1 ../../lib/libRDKitRDGeometryLib.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 8%] Built target RDGeometryLib /usr/bin/gmake -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/SimDivPickers 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/usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o -MF CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o.d -o CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/SimDivPickers/testPickers.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/SimDivPickers/testPickers.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 9%] Linking CXX executable testSimDivPickers cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/SimDivPickers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSimDivPickers.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o -o testSimDivPickers ../../lib/libRDKitSimDivPickers.so.1.2023.03.2 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Code/SimDivPickers/CMakeFiles/pickersTestsCatch.dir/build.make Code/SimDivPickers/CMakeFiles/pickersTestsCatch.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 9%] Building CXX object Code/SimDivPickers/CMakeFiles/pickersTestsCatch.dir/catch_tests.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/SimDivPickers && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/SimDivPickers/CMakeFiles/pickersTestsCatch.dir/catch_tests.cpp.o -MF CMakeFiles/pickersTestsCatch.dir/catch_tests.cpp.o.d -o CMakeFiles/pickersTestsCatch.dir/catch_tests.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/SimDivPickers/catch_tests.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/SimDivPickers/catch_tests.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 9%] Linking CXX executable pickersTestsCatch cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/SimDivPickers && /usr/bin/cmake -E cmake_link_script CMakeFiles/pickersTestsCatch.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/pickersTestsCatch.dir/catch_tests.cpp.o -o pickersTestsCatch ../RDGeneral/librdkitCatch.so ../../lib/libRDKitSimDivPickers.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../lib/libRDKithc.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 9%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o -MF CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o.d -o CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/wrap_FPB.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/wrap_FPB.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 9%] Built target pickersTestsCatch /usr/bin/gmake -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/SimDivPickers/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection 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/builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/InfoTheory/Wrap/BitCorrMatGenerator.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/InfoTheory/Wrap/BitCorrMatGenerator.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 10%] Linking CXX shared module ../../../rdkit/ML/Data/cQuantize.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/Data && /usr/bin/cmake -E cmake_link_script CMakeFiles/cQuantize.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../rdkit/ML/Data/cQuantize.so CMakeFiles/cQuantize.dir/cQuantize.cpp.o ../../../lib/libRDKitInfoTheory.so.1.2023.03.2 ../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 10%] Built target cQuantize /usr/bin/gmake -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 10%] Building CXX object Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ChemicalFeatures && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DChemicalFeatures_EXPORTS 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Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o -MF CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o.d -o CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ChemicalFeatures/FreeChemicalFeature.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ChemicalFeatures/FreeChemicalFeature.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 10%] Linking CXX shared library ../../lib/libRDKitChemicalFeatures.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemicalFeatures.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitChemicalFeatures.so.1 -o ../../lib/libRDKitChemicalFeatures.so.1.2023.03.2 CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ChemicalFeatures && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitChemicalFeatures.so.1.2023.03.2 ../../lib/libRDKitChemicalFeatures.so.1 ../../lib/libRDKitChemicalFeatures.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 10%] Built target ChemicalFeatures /usr/bin/gmake -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CMakeFiles/GraphMol.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 10%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Atom.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Atom.cpp.o -MF CMakeFiles/GraphMol.dir/Atom.cpp.o.d -o CMakeFiles/GraphMol.dir/Atom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Atom.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Atom.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 10%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/InfoTheory/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdInfoTheory_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o -MF CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o.d -o CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/InfoTheory/Wrap/rdInfoTheory.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/InfoTheory/Wrap/rdInfoTheory.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 10%] Linking CXX shared module ../../../../rdkit/ML/InfoTheory/rdInfoTheory.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/InfoTheory/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdInfoTheory.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/ML/InfoTheory/rdInfoTheory.so CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o ../../../../lib/libRDKitInfoTheory.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 10%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryAtom.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/QueryAtom.cpp.o -MF CMakeFiles/GraphMol.dir/QueryAtom.cpp.o.d -o CMakeFiles/GraphMol.dir/QueryAtom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/QueryAtom.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/QueryAtom.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 10%] Built target rdInfoTheory /usr/bin/gmake -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/CMakeFiles/testTransforms.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 10%] Building CXX object Code/Geometry/CMakeFiles/testTransforms.dir/testTransforms.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/Geometry/CMakeFiles/testTransforms.dir/testTransforms.cpp.o -MF CMakeFiles/testTransforms.dir/testTransforms.cpp.o.d -o CMakeFiles/testTransforms.dir/testTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/testTransforms.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/testTransforms.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 10%] Linking CXX executable testTransforms cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/testTransforms.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testTransforms.dir/testTransforms.cpp.o -o testTransforms ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 10%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryBond.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated 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/usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/Geometry/CMakeFiles/testGrid.dir/testGrid.cpp.o -MF CMakeFiles/testGrid.dir/testGrid.cpp.o.d -o CMakeFiles/testGrid.dir/testGrid.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/testGrid.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/testGrid.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 11%] Linking CXX executable testGrid cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry && /usr/bin/cmake 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'/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 11%] Building CXX object Code/Geometry/CMakeFiles/geometryTestsCatch.dir/catch_tests.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection 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/builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Bond.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 12%] Linking CXX executable geometryTestsCatch cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/geometryTestsCatch.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 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-I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/Point.cpp.o -MF CMakeFiles/rdGeometry.dir/Point.cpp.o.d -o CMakeFiles/rdGeometry.dir/Point.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/Wrap/Point.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/Wrap/Point.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 12%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolOps.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer 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-I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o -MF CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o.d -o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/Wrap/UniformGrid3D.cpp annobin: 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/FindRings.cpp.o -MF CMakeFiles/GraphMol.dir/FindRings.cpp.o.d -o CMakeFiles/GraphMol.dir/FindRings.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FindRings.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FindRings.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FindRings.cpp: In function 'void RDKit::MolOps::findRingFamilies(const RDKit::ROMol&)': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FindRings.cpp:1348:36: warning: unused parameter 'mol' [-Wunused-parameter] 1348 | void findRingFamilies(const ROMol &mol) { | ~~~~~~~~~~~~~^~~ [ 13%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o -MF CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o.d -o CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/Wrap/rdGeometry.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/Wrap/rdGeometry.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 13%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/ROMol.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/ROMol.cpp.o -MF CMakeFiles/GraphMol.dir/ROMol.cpp.o.d -o CMakeFiles/GraphMol.dir/ROMol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ROMol.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ROMol.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 13%] Linking CXX shared module ../../../rdkit/Geometry/rdGeometry.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdGeometry.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../rdkit/Geometry/rdGeometry.so CMakeFiles/rdGeometry.dir/Point.cpp.o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 13%] Built target rdGeometry /usr/bin/gmake -f Code/Numerics/CMakeFiles/testConrec.dir/build.make Code/Numerics/CMakeFiles/testConrec.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/CMakeFiles/testConrec.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/Numerics/CMakeFiles/testConrec.dir/build.make Code/Numerics/CMakeFiles/testConrec.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 13%] Building CXX object Code/Numerics/CMakeFiles/testConrec.dir/testConrec.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/Numerics/CMakeFiles/testConrec.dir/testConrec.cpp.o -MF CMakeFiles/testConrec.dir/testConrec.cpp.o.d -o CMakeFiles/testConrec.dir/testConrec.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/testConrec.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/testConrec.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 13%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/RWMol.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/RWMol.cpp.o -MF CMakeFiles/GraphMol.dir/RWMol.cpp.o.d -o CMakeFiles/GraphMol.dir/RWMol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/RWMol.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/RWMol.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 13%] Linking CXX executable testConrec cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics && /usr/bin/cmake -E cmake_link_script CMakeFiles/testConrec.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testConrec.dir/testConrec.cpp.o -o testConrec ../RDGeneral/librdkitCatch.so ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 13%] Built target testConrec /usr/bin/gmake -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment/CMakeFiles/Alignment.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 13%] Building CXX object Code/Numerics/Alignment/CMakeFiles/Alignment.dir/AlignPoints.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment && /usr/bin/g++ -DAlignment_EXPORTS -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_ALIGNMENT_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/Numerics/Alignment/CMakeFiles/Alignment.dir/AlignPoints.cpp.o -MF CMakeFiles/Alignment.dir/AlignPoints.cpp.o.d -o CMakeFiles/Alignment.dir/AlignPoints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment/AlignPoints.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment/AlignPoints.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 13%] Linking CXX shared library ../../../lib/libRDKitAlignment.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_link_script CMakeFiles/Alignment.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitAlignment.so.1 -o ../../../lib/libRDKitAlignment.so.1.2023.03.2 CMakeFiles/Alignment.dir/AlignPoints.cpp.o ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitAlignment.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1 ../../../lib/libRDKitAlignment.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 13%] Built target Alignment /usr/bin/gmake -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 13%] Building CXX object Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ChemicalFeatures && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o -MF CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o.d -o CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ChemicalFeatures/testChemicalFeatures.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ChemicalFeatures/testChemicalFeatures.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 13%] Linking CXX executable testChemicalFeatures cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/testChemicalFeatures.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o -o testChemicalFeatures ../../lib/libRDKitChemicalFeatures.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 13%] Built target testChemicalFeatures /usr/bin/gmake -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 13%] Building CXX object Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/testAlignment.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/testAlignment.cpp.o -MF CMakeFiles/testAlignment.dir/testAlignment.cpp.o.d -o CMakeFiles/testAlignment.dir/testAlignment.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment/testAlignment.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment/testAlignment.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 13%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION 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/builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PeriodicTable.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 13%] Linking CXX executable testAlignment cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_link_script CMakeFiles/testAlignment.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testAlignment.dir/testAlignment.cpp.o -o testAlignment ../../../lib/libRDKitAlignment.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 13%] Built target testAlignment /usr/bin/gmake -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/DependInfo.cmake --color= [ 13%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/atomic_data.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/atomic_data.cpp.o -MF CMakeFiles/GraphMol.dir/atomic_data.cpp.o.d -o CMakeFiles/GraphMol.dir/atomic_data.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/atomic_data.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 13%] Building CXX object Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdAlignment_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o -MF CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o.d -o CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment/Wrap/rdAlignment.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/atomic_data.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment/Wrap/rdAlignment.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 13%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryOps.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/QueryOps.cpp.o -MF CMakeFiles/GraphMol.dir/QueryOps.cpp.o.d -o CMakeFiles/GraphMol.dir/QueryOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/QueryOps.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/QueryOps.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 13%] Linking CXX shared module ../../../../rdkit/Numerics/rdAlignment.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdAlignment.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Numerics/rdAlignment.so CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o ../../../../lib/libRDKitAlignment.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 13%] Built target rdAlignment [ 14%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolPickler.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/MolPickler.cpp.o -MF CMakeFiles/GraphMol.dir/MolPickler.cpp.o.d -o CMakeFiles/GraphMol.dir/MolPickler.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolPickler.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolPickler.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 14%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Canon.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Canon.cpp.o -MF CMakeFiles/GraphMol.dir/Canon.cpp.o.d -o CMakeFiles/GraphMol.dir/Canon.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Canon.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Canon.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolPickler.cpp: In instantiation of 'static RDKit::Atom* RDKit::MolPickler::_addAtomFromPickle(std::istream&, RDKit::ROMol*, RDGeom::Point3D&, int, bool) [with T = int; std::istream = std::basic_istream]': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolPickler.cpp:1081:39: required from 'static void RDKit::MolPickler::_depickle(std::istream&, RDKit::ROMol*, int, int, unsigned int) [with T = int; std::istream = std::basic_istream]' /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolPickler.cpp:854:27: required from here /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolPickler.cpp:1666:37: warning: comparison is always false due to limited range of data type [-Wtype-limits] 1666 | if ((tmpChar < 0 || tmpChar > 127) && version > 9000) { | ~~~~~~~~^~~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolPickler.cpp: In instantiation of 'static RDKit::Atom* RDKit::MolPickler::_addAtomFromPickle(std::istream&, RDKit::ROMol*, RDGeom::Point3D&, int, bool) [with T = unsigned char; std::istream = std::basic_istream]': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolPickler.cpp:1081:39: required from 'static void RDKit::MolPickler::_depickle(std::istream&, RDKit::ROMol*, int, int, unsigned int) [with T = unsigned char; std::istream = std::basic_istream]' /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolPickler.cpp:856:33: required from here /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolPickler.cpp:1666:37: warning: comparison is always false due to limited range of data type [-Wtype-limits] [ 14%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AtomIterators.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/AtomIterators.cpp.o -MF CMakeFiles/GraphMol.dir/AtomIterators.cpp.o.d -o CMakeFiles/GraphMol.dir/AtomIterators.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/AtomIterators.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/AtomIterators.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 14%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/BondIterators.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/BondIterators.cpp.o -MF CMakeFiles/GraphMol.dir/BondIterators.cpp.o.d -o CMakeFiles/GraphMol.dir/BondIterators.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/BondIterators.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/BondIterators.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 14%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Aromaticity.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Aromaticity.cpp.o -MF CMakeFiles/GraphMol.dir/Aromaticity.cpp.o.d -o CMakeFiles/GraphMol.dir/Aromaticity.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Aromaticity.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Aromaticity.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 14%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Kekulize.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Kekulize.cpp.o -MF CMakeFiles/GraphMol.dir/Kekulize.cpp.o.d -o CMakeFiles/GraphMol.dir/Kekulize.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Kekulize.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Kekulize.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 14%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD 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CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ConjugHybrid.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ConjugHybrid.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 14%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AddHs.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/AddHs.cpp.o -MF CMakeFiles/GraphMol.dir/AddHs.cpp.o.d -o CMakeFiles/GraphMol.dir/AddHs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/AddHs.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/AddHs.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 15%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Matrices.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Matrices.cpp.o -MF CMakeFiles/GraphMol.dir/Matrices.cpp.o.d -o CMakeFiles/GraphMol.dir/Matrices.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Matrices.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Matrices.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 15%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Chirality.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Chirality.cpp.o -MF CMakeFiles/GraphMol.dir/Chirality.cpp.o.d -o CMakeFiles/GraphMol.dir/Chirality.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Chirality.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Chirality.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 15%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/RingInfo.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/RingInfo.cpp.o -MF CMakeFiles/GraphMol.dir/RingInfo.cpp.o.d -o CMakeFiles/GraphMol.dir/RingInfo.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/RingInfo.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/RingInfo.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 15%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Conformer.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Conformer.cpp.o -MF CMakeFiles/GraphMol.dir/Conformer.cpp.o.d -o CMakeFiles/GraphMol.dir/Conformer.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Conformer.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Conformer.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 15%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Renumber.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Renumber.cpp.o -MF CMakeFiles/GraphMol.dir/Renumber.cpp.o.d -o CMakeFiles/GraphMol.dir/Renumber.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Renumber.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Renumber.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 15%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o -MF CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o.d -o CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/AdjustQuery.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/AdjustQuery.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 15%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Resonance.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Resonance.cpp.o -MF CMakeFiles/GraphMol.dir/Resonance.cpp.o.d -o CMakeFiles/GraphMol.dir/Resonance.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Resonance.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Resonance.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 15%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/StereoGroup.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/StereoGroup.cpp.o -MF CMakeFiles/GraphMol.dir/StereoGroup.cpp.o.d -o CMakeFiles/GraphMol.dir/StereoGroup.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/StereoGroup.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/StereoGroup.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 15%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/new_canon.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/new_canon.cpp.o -MF CMakeFiles/GraphMol.dir/new_canon.cpp.o.d -o CMakeFiles/GraphMol.dir/new_canon.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/new_canon.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/new_canon.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 16%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/SubstanceGroup.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/SubstanceGroup.cpp.o -MF CMakeFiles/GraphMol.dir/SubstanceGroup.cpp.o.d -o CMakeFiles/GraphMol.dir/SubstanceGroup.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstanceGroup.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstanceGroup.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 16%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/FindStereo.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/FindStereo.cpp.o -MF CMakeFiles/GraphMol.dir/FindStereo.cpp.o.d -o CMakeFiles/GraphMol.dir/FindStereo.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FindStereo.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FindStereo.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 16%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MonomerInfo.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/MonomerInfo.cpp.o -MF CMakeFiles/GraphMol.dir/MonomerInfo.cpp.o.d -o CMakeFiles/GraphMol.dir/MonomerInfo.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MonomerInfo.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MonomerInfo.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 16%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/NontetrahedralStereo.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/NontetrahedralStereo.cpp.o -MF CMakeFiles/GraphMol.dir/NontetrahedralStereo.cpp.o.d -o CMakeFiles/GraphMol.dir/NontetrahedralStereo.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/NontetrahedralStereo.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/NontetrahedralStereo.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 16%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/WedgeBonds.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/WedgeBonds.cpp.o -MF CMakeFiles/GraphMol.dir/WedgeBonds.cpp.o.d -o CMakeFiles/GraphMol.dir/WedgeBonds.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/WedgeBonds.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/WedgeBonds.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 16%] Linking CXX shared library ../../lib/libRDKitGraphMol.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/GraphMol.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitGraphMol.so.1 -o ../../lib/libRDKitGraphMol.so.1.2023.03.2 CMakeFiles/GraphMol.dir/Atom.cpp.o CMakeFiles/GraphMol.dir/QueryAtom.cpp.o CMakeFiles/GraphMol.dir/QueryBond.cpp.o CMakeFiles/GraphMol.dir/Bond.cpp.o CMakeFiles/GraphMol.dir/MolOps.cpp.o CMakeFiles/GraphMol.dir/FindRings.cpp.o CMakeFiles/GraphMol.dir/ROMol.cpp.o CMakeFiles/GraphMol.dir/RWMol.cpp.o CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o CMakeFiles/GraphMol.dir/atomic_data.cpp.o CMakeFiles/GraphMol.dir/QueryOps.cpp.o CMakeFiles/GraphMol.dir/MolPickler.cpp.o CMakeFiles/GraphMol.dir/Canon.cpp.o CMakeFiles/GraphMol.dir/AtomIterators.cpp.o CMakeFiles/GraphMol.dir/BondIterators.cpp.o CMakeFiles/GraphMol.dir/Aromaticity.cpp.o CMakeFiles/GraphMol.dir/Kekulize.cpp.o CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o CMakeFiles/GraphMol.dir/AddHs.cpp.o CMakeFiles/GraphMol.dir/Matrices.cpp.o CMakeFiles/GraphMol.dir/Chirality.cpp.o CMakeFiles/GraphMol.dir/RingInfo.cpp.o CMakeFiles/GraphMol.dir/Conformer.cpp.o CMakeFiles/GraphMol.dir/Renumber.cpp.o CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o CMakeFiles/GraphMol.dir/Resonance.cpp.o CMakeFiles/GraphMol.dir/StereoGroup.cpp.o CMakeFiles/GraphMol.dir/new_canon.cpp.o CMakeFiles/GraphMol.dir/SubstanceGroup.cpp.o CMakeFiles/GraphMol.dir/FindStereo.cpp.o CMakeFiles/GraphMol.dir/MonomerInfo.cpp.o CMakeFiles/GraphMol.dir/NontetrahedralStereo.cpp.o CMakeFiles/GraphMol.dir/WedgeBonds.cpp.o ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl In function 'add_edge', inlined from 'addBond' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/RWMol.cpp:396:42: /usr/include/boost/graph/detail/adjacency_list.hpp:2266:20: warning: 'p' may be used uninitialized [-Wmaybe-uninitialized] 2266 | return add_edge(u, v, p, g_); | ^ /usr/include/boost/graph/detail/adjacency_list.hpp: In member function 'addBond': /usr/include/boost/graph/detail/adjacency_list.hpp:2247:60: note: by argument 3 of type 'struct Bond * const &' to 'add_edge' declared here 2247 | inline std::pair< typename Config::edge_descriptor, bool > add_edge( | ^ /usr/include/boost/graph/detail/adjacency_list.hpp:2265:41: note: 'p' declared here 2265 | typename Config::edge_property_type p; | ^ cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1 ../../lib/libRDKitGraphMol.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 16%] Built target GraphMol /usr/bin/gmake -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/depend /usr/bin/gmake -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/DependInfo.cmake --color= gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 16%] Building CXX object Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolTransforms_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLTRANSFORMS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o -MF CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o.d -o CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms/MolTransforms.cpp [ 16%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o -MF CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o.d -o CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/SmilesParse.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms/MolTransforms.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/SmilesParse.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 16%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o -MF CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o.d -o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/SmilesParseOps.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/SmilesParseOps.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 16%] Linking CXX shared library ../../../lib/libRDKitMolTransforms.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolTransforms.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitMolTransforms.so.1 -o ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1 ../../../lib/libRDKitMolTransforms.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 16%] Built target MolTransforms /usr/bin/gmake -f Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/build.make Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/GenericGroups /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/GenericGroups /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/build.make Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 16%] Building CXX object Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/GenericGroups.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/GenericGroups && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGenericGroups_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GENERICGROUPS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/GenericGroups.cpp.o -MF CMakeFiles/GenericGroups.dir/GenericGroups.cpp.o.d -o CMakeFiles/GenericGroups.dir/GenericGroups.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/GenericGroups/GenericGroups.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/GenericGroups/GenericGroups.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 17%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o -MF CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o.d -o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/SmilesWrite.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/SmilesWrite.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 17%] Linking CXX shared library ../../../lib/libRDKitGenericGroups.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/GenericGroups && /usr/bin/cmake -E cmake_link_script CMakeFiles/GenericGroups.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitGenericGroups.so.1 -o ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 CMakeFiles/GenericGroups.dir/GenericGroups.cpp.o ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.78.0 cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/GenericGroups && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1 ../../../lib/libRDKitGenericGroups.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 17%] Built target GenericGroups /usr/bin/gmake -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 18%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SUBGRAPHS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubgraphs_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o -MF CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o.d -o CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs/Subgraphs.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs/Subgraphs.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 18%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o -MF CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o.d -o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/SmartsWrite.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/SmartsWrite.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 18%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SUBGRAPHS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubgraphs_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o -MF CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o.d -o CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs/SubgraphUtils.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs/SubgraphUtils.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 18%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o -MF CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o.d -o CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/CXSmilesOps.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/CXSmilesOps.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 18%] Linking CXX shared library ../../../lib/libRDKitSubgraphs.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/Subgraphs.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitSubgraphs.so.1 -o ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.78.0 cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1 ../../../lib/libRDKitSubgraphs.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 18%] Built target Subgraphs /usr/bin/gmake -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 19%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DPartialCharges_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_PARTIALCHARGES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o -MF CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o.d -o CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges/GasteigerCharges.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges/GasteigerCharges.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 19%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DPartialCharges_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_PARTIALCHARGES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o -MF CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o.d -o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges/GasteigerParams.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges/GasteigerParams.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 19%] Linking CXX shared library ../../../lib/libRDKitPartialCharges.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_link_script CMakeFiles/PartialCharges.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitPartialCharges.so.1 -o ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.78.0 cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitPartialCharges.so.1 ../../../lib/libRDKitPartialCharges.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 19%] Built target PartialCharges /usr/bin/gmake -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 19%] Building CXX object Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/Trajectory.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Trajectory && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_TRAJECTORY_BUILD -DRDK_64BIT_BUILD 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CMakeFiles/Trajectory.dir/Trajectory.cpp.o.d -o CMakeFiles/Trajectory.dir/Trajectory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Trajectory/Trajectory.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Trajectory/Trajectory.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 19%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o -MF CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o.d -o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/smarts.tab.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/smarts.tab.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 19%] Linking CXX shared library ../../../lib/libRDKitTrajectory.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Trajectory && /usr/bin/cmake -E cmake_link_script CMakeFiles/Trajectory.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitTrajectory.so.1 -o ../../../lib/libRDKitTrajectory.so.1.2023.03.2 CMakeFiles/Trajectory.dir/Trajectory.cpp.o ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.78.0 cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Trajectory && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../lib/libRDKitTrajectory.so.1 ../../../lib/libRDKitTrajectory.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 19%] Built target Trajectory /usr/bin/gmake -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 19%] Building CXX object Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB 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Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o -MF CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o.d -o CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges/Wrap/rdPartialCharges.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges/Wrap/rdPartialCharges.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 19%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o -MF CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o.d -o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/smiles.tab.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/smiles.tab.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 19%] Linking CXX shared module ../../../../rdkit/Chem/rdPartialCharges.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdPartialCharges.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/rdPartialCharges.so CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o ../../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 19%] Built target rdPartialCharges /usr/bin/gmake -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make 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Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolTransforms_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic 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CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o.d -o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/lex.yysmarts.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/lex.yysmarts.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 19%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o -MF CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o.d -o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/lex.yysmiles.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/lex.yysmiles.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 19%] Linking CXX shared module ../../../../rdkit/Chem/rdMolTransforms.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolTransforms.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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/builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 20%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SHAPEHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DShapeHelpers_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o -MF CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o.d -o CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/ShapeEncoder.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/ShapeEncoder.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 20%] Linking CXX shared library ../../../lib/libRDKitSmilesParse.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/SmilesParse.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitSmilesParse.so.1 -o ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.78.0 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/smarts.tab.hpp:104:7: warning: type 'union YYSTYPE' violates the C++ One Definition Rule [-Wodr] 104 | union YYSTYPE { | ^ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/smiles.tab.hpp:77:7: note: a different type is defined in another translation unit 77 | union YYSTYPE { | ^ smarts.yy:81:21: note: the first difference of corresponding definitions is field 'atom' 81 | RDKit::QueryAtom * atom; | ^ smiles.yy:84:16: note: a field of same name but different type is defined in another translation unit 84 | RDKit::Atom * atom; | ^ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/QueryAtom.h:28:29: note: type name 'RDKit::QueryAtom' should match type name 'RDKit::Atom' 28 | class RDKIT_GRAPHMOL_EXPORT QueryAtom : public Atom { | ^ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Atom.h:68:29: note: the incompatible type is defined here 68 | class RDKIT_GRAPHMOL_EXPORT Atom : public RDProps { | ^ /scratch/RDKit_git/Code/GraphMol/SmilesParse/smarts.tab.cpp:491:7: warning: type 'union yyalloc' violates the C++ One Definition Rule [-Wodr] /scratch/RDKit_git/Code/GraphMol/SmilesParse/smiles.tab.cpp:488:7: note: a different type is defined in another translation unit /scratch/RDKit_git/Code/GraphMol/SmilesParse/smarts.tab.cpp:492:14: note: the first difference of corresponding definitions is field 'yyss_alloc' /scratch/RDKit_git/Code/GraphMol/SmilesParse/smiles.tab.cpp:489:14: note: a field of same name but different type is defined in another translation unit [ 20%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SHAPEHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DShapeHelpers_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o -MF CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o.d -o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/ShapeUtils.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/ShapeUtils.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 20%] Linking CXX shared library ../../../lib/libRDKitShapeHelpers.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/ShapeHelpers.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitShapeHelpers.so.1 -o ../../../lib/libRDKitShapeHelpers.so.1.2023.03.2 CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitShapeHelpers.so.1.2023.03.2 ../../../lib/libRDKitShapeHelpers.so.1 ../../../lib/libRDKitShapeHelpers.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 20%] Built target ShapeHelpers /usr/bin/gmake -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 20%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o -MF CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o.d -o CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog/MolCatalogEntry.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog/MolCatalogEntry.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 20%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o -MF CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o.d -o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog/MolCatalogParams.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog/MolCatalogParams.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 20%] Linking CXX shared library ../../../lib/libRDKitMolCatalog.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolCatalog.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitMolCatalog.so.1 -o ../../../lib/libRDKitMolCatalog.so.1.2023.03.2 CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolCatalog.so.1.2023.03.2 ../../../lib/libRDKitMolCatalog.so.1 ../../../lib/libRDKitMolCatalog.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 20%] Built target MolCatalog /usr/bin/gmake -f Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/build.make Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/build.make Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 20%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/CIPMol.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/CIPMol.cpp.o -MF CMakeFiles/CIPLabeler.dir/CIPMol.cpp.o.d -o CMakeFiles/CIPLabeler.dir/CIPMol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/CIPMol.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/CIPMol.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1 ../../../lib/libRDKitSmilesParse.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 20%] Built target SmilesParse /usr/bin/gmake -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse 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-I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNParse.cpp.o -MF CMakeFiles/SLNParse.dir/SLNParse.cpp.o.d -o CMakeFiles/SLNParse.dir/SLNParse.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse/SLNParse.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse/SLNParse.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 20%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/CIPLabeler.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/CIPLabeler.cpp.o -MF CMakeFiles/CIPLabeler.dir/CIPLabeler.cpp.o.d -o CMakeFiles/CIPLabeler.dir/CIPLabeler.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/CIPLabeler.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/CIPLabeler.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 20%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Mancude.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Mancude.cpp.o -MF CMakeFiles/CIPLabeler.dir/Mancude.cpp.o.d -o CMakeFiles/CIPLabeler.dir/Mancude.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/Mancude.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/Mancude.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 20%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security 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-DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Digraph.cpp.o -MF CMakeFiles/CIPLabeler.dir/Digraph.cpp.o.d -o CMakeFiles/CIPLabeler.dir/Digraph.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/Digraph.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/Digraph.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 21%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Node.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Node.cpp.o -MF CMakeFiles/CIPLabeler.dir/Node.cpp.o.d -o CMakeFiles/CIPLabeler.dir/Node.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/Node.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/Node.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 21%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/sln.tab.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/sln.tab.cpp.o -MF CMakeFiles/SLNParse.dir/sln.tab.cpp.o.d -o CMakeFiles/SLNParse.dir/sln.tab.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse/sln.tab.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse/sln.tab.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 21%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Edge.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Edge.cpp.o -MF CMakeFiles/CIPLabeler.dir/Edge.cpp.o.d -o CMakeFiles/CIPLabeler.dir/Edge.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/Edge.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/Edge.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 21%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Sort.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Sort.cpp.o -MF CMakeFiles/CIPLabeler.dir/Sort.cpp.o.d -o CMakeFiles/CIPLabeler.dir/Sort.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/Sort.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/Sort.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 21%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/configs/Configuration.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD 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CMakeFiles/CIPLabeler.dir/configs/Configuration.cpp.o.d -o CMakeFiles/CIPLabeler.dir/configs/Configuration.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/configs/Configuration.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/configs/Configuration.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 21%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/configs/Sp2Bond.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/configs/Sp2Bond.cpp.o -MF CMakeFiles/CIPLabeler.dir/configs/Sp2Bond.cpp.o.d -o CMakeFiles/CIPLabeler.dir/configs/Sp2Bond.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/configs/Sp2Bond.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/configs/Sp2Bond.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 21%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/lex.yysln.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/lex.yysln.cpp.o -MF CMakeFiles/SLNParse.dir/lex.yysln.cpp.o.d -o CMakeFiles/SLNParse.dir/lex.yysln.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse/lex.yysln.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse/lex.yysln.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 21%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/configs/Tetrahedral.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/configs/Tetrahedral.cpp.o -MF CMakeFiles/CIPLabeler.dir/configs/Tetrahedral.cpp.o.d -o CMakeFiles/CIPLabeler.dir/configs/Tetrahedral.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/configs/Tetrahedral.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/configs/Tetrahedral.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 21%] Linking CXX shared library ../../../lib/libRDKitSLNParse.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/SLNParse.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitSLNParse.so.1 -o ../../../lib/libRDKitSLNParse.so.1.2023.03.2 CMakeFiles/SLNParse.dir/SLNParse.cpp.o CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o CMakeFiles/SLNParse.dir/sln.tab.cpp.o CMakeFiles/SLNParse.dir/lex.yysln.cpp.o ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.78.0 [ 21%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule1a.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule1a.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule1a.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule1a.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule1a.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule1a.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 22%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule1b.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule1b.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule1b.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule1b.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule1b.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule1b.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 22%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule2.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule2.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule2.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule2.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule2.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule2.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSLNParse.so.1.2023.03.2 ../../../lib/libRDKitSLNParse.so.1 ../../../lib/libRDKitSLNParse.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 22%] Built target SLNParse /usr/bin/gmake -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 22%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/rdqueries.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdqueries_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/rdqueries.cpp.o -MF CMakeFiles/rdqueries.dir/rdqueries.cpp.o.d -o CMakeFiles/rdqueries.dir/rdqueries.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/rdqueries.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/rdqueries.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 22%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule3.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule3.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule3.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule3.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule3.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule3.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 22%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule4a.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule4a.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule4a.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule4a.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule4a.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule4a.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 22%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule4b.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule4b.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule4b.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule4b.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule4b.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule4b.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 22%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/Queries.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdqueries_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/Queries.cpp.o -MF CMakeFiles/rdqueries.dir/Queries.cpp.o.d -o CMakeFiles/rdqueries.dir/Queries.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/Queries.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/Queries.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 22%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule4c.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection 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-DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule5.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule5.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule5.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule5.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule5.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 22%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule5New.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule5New.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule5New.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule5New.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule5New.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule5New.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 22%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule6.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer 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-DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/SequenceRule.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/SequenceRule.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/SequenceRule.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/SequenceRule.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/SequenceRule.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 23%] Linking CXX shared library ../../../lib/libRDKitCIPLabeler.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/cmake -E cmake_link_script CMakeFiles/CIPLabeler.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitCIPLabeler.so.1 -o ../../../lib/libRDKitCIPLabeler.so.1.2023.03.2 CMakeFiles/CIPLabeler.dir/CIPMol.cpp.o CMakeFiles/CIPLabeler.dir/CIPLabeler.cpp.o CMakeFiles/CIPLabeler.dir/Mancude.cpp.o CMakeFiles/CIPLabeler.dir/Digraph.cpp.o CMakeFiles/CIPLabeler.dir/Node.cpp.o CMakeFiles/CIPLabeler.dir/Edge.cpp.o CMakeFiles/CIPLabeler.dir/Sort.cpp.o CMakeFiles/CIPLabeler.dir/configs/Configuration.cpp.o CMakeFiles/CIPLabeler.dir/configs/Sp2Bond.cpp.o CMakeFiles/CIPLabeler.dir/configs/Tetrahedral.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule1a.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule1b.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule2.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule3.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule4a.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule4b.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule4c.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule5.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule5New.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule6.cpp.o CMakeFiles/CIPLabeler.dir/rules/SequenceRule.cpp.o ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.78.0 cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitCIPLabeler.so.1.2023.03.2 ../../../lib/libRDKitCIPLabeler.so.1 ../../../lib/libRDKitCIPLabeler.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 23%] Built target CIPLabeler /usr/bin/gmake -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 23%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB 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Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o -MF CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o.d -o CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/Trajectory.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/Trajectory.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 23%] Linking CXX shared module ../../../rdkit/Chem/rdqueries.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdqueries.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../rdkit/Chem/rdqueries.so CMakeFiles/rdqueries.dir/rdqueries.cpp.o CMakeFiles/rdqueries.dir/Queries.cpp.o ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' 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'/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 23%] Building CXX object Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ChemicalFeatures/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemicalFeatures_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o -MF CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o.d -o CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ChemicalFeatures/Wrap/rdChemicalFeatures.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ChemicalFeatures/Wrap/rdChemicalFeatures.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 23%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB 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Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o -MF CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o.d -o CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/rdTrajectory.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/rdTrajectory.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 23%] Building CXX object Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ChemicalFeatures/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemicalFeatures_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o -MF CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o.d -o CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ChemicalFeatures/Wrap/FreeChemicalFeature.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ChemicalFeatures/Wrap/FreeChemicalFeature.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 23%] Linking CXX shared module ../../../rdkit/Chem/rdtrajectory.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdtrajectory.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../rdkit/Chem/rdtrajectory.so CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o ../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 23%] Built target rdtrajectory /usr/bin/gmake -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 23%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Substruct && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTMATCH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructMatch_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o -MF CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o.d -o CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Substruct/SubstructMatch.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Substruct/SubstructMatch.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 23%] Linking CXX shared module ../../../rdkit/Chem/rdChemicalFeatures.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ChemicalFeatures/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdChemicalFeatures.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../rdkit/Chem/rdChemicalFeatures.so CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o ../../../lib/libRDKitChemicalFeatures.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 23%] Built target rdChemicalFeatures /usr/bin/gmake -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/DependInfo.cmake --color= gmake[2]: 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-grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o -MF CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o.d -o CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Optimizer/BFGSOpt.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Optimizer/BFGSOpt.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 23%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/LinearSearch.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Optimizer && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DOptimizer_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_OPTIMIZER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/LinearSearch.cpp.o -MF CMakeFiles/Optimizer.dir/LinearSearch.cpp.o.d -o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Optimizer/LinearSearch.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Optimizer/LinearSearch.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 23%] Linking CXX shared library ../../../lib/libRDKitOptimizer.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_link_script CMakeFiles/Optimizer.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitOptimizer.so.1 -o ../../../lib/libRDKitOptimizer.so.1.2023.03.2 CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o ../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.78.0 cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../../lib/libRDKitOptimizer.so.1 ../../../lib/libRDKitOptimizer.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 23%] Built target Optimizer /usr/bin/gmake -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CMakeFiles/graphmolcpTest.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 23%] Building CXX object Code/GraphMol/CMakeFiles/graphmolcpTest.dir/cptest.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/graphmolcpTest.dir/cptest.cpp.o -MF CMakeFiles/graphmolcpTest.dir/cptest.cpp.o.d -o CMakeFiles/graphmolcpTest.dir/cptest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/cptest.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/cptest.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 23%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Substruct && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTMATCH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructMatch_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o -MF CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o.d -o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Substruct/SubstructUtils.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Substruct/SubstructUtils.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 23%] Linking CXX executable graphmolcpTest cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolcpTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/graphmolcpTest.dir/cptest.cpp.o -o graphmolcpTest ../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 23%] Built target graphmolcpTest /usr/bin/gmake -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CMakeFiles/graphmolIterTest.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 23%] Building CXX object Code/GraphMol/CMakeFiles/graphmolIterTest.dir/itertest.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT 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-c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/itertest.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/itertest.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 23%] Linking CXX shared library ../../../lib/libRDKitSubstructMatch.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/SubstructMatch.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitSubstructMatch.so.1 -o ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 23%] Linking CXX executable graphmolIterTest cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolIterTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/graphmolIterTest.dir/itertest.cpp.o -o graphmolIterTest ../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 23%] Built target graphmolIterTest /usr/bin/gmake -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 23%] Building CXX object Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o -MF CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o.d -o CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/memtest1.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/memtest1.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1 ../../../lib/libRDKitSubstructMatch.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 23%] Built target SubstructMatch /usr/bin/gmake -f Code/GraphMol/CMakeFiles/test-valgrind.dir/build.make Code/GraphMol/CMakeFiles/test-valgrind.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CMakeFiles/test-valgrind.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/CMakeFiles/test-valgrind.dir/build.make Code/GraphMol/CMakeFiles/test-valgrind.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 23%] Building CXX object Code/GraphMol/CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o -MF CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o.d -o CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/test-valgrind.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/test-valgrind.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 23%] Linking CXX executable graphmolMemTest1 cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolMemTest1.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o -o graphmolMemTest1 ../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 23%] Built target graphmolMemTest1 /usr/bin/gmake -f Code/GraphMol/CMakeFiles/moliteratorTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/moliteratorTestsCatch.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CMakeFiles/moliteratorTestsCatch.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/CMakeFiles/moliteratorTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/moliteratorTestsCatch.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 23%] Building CXX object Code/GraphMol/CMakeFiles/moliteratorTestsCatch.dir/catch_moliterators.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/moliteratorTestsCatch.dir/catch_moliterators.cpp.o -MF CMakeFiles/moliteratorTestsCatch.dir/catch_moliterators.cpp.o.d -o CMakeFiles/moliteratorTestsCatch.dir/catch_moliterators.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/catch_moliterators.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/catch_moliterators.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 23%] Linking CXX executable test-valgrind cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-valgrind.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o" -o test-valgrind ../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 23%] Built target test-valgrind /usr/bin/gmake -f Code/GraphMol/CMakeFiles/queryTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/queryTestsCatch.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 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-I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/queryTestsCatch.dir/catch_queries.cpp.o -MF CMakeFiles/queryTestsCatch.dir/catch_queries.cpp.o.d -o CMakeFiles/queryTestsCatch.dir/catch_queries.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/catch_queries.cpp annobin: 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-specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/queryTestsCatch.dir/catch_queries.cpp.o -o queryTestsCatch ../RDGeneral/librdkitCatch.so ../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 24%] Built target queryTestsCatch /usr/bin/gmake -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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/builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/PatternFingerprints.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 24%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall 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/usr/bin/cmake -E cmake_link_script CMakeFiles/smaTest1.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/smaTest1.dir/smatest.cpp.o -o smaTest1 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 25%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o -MF CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o.d -o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/AtomPairs.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/AtomPairs.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 25%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MACCS.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MACCS.cpp.o -MF CMakeFiles/Fingerprints.dir/MACCS.cpp.o.d -o CMakeFiles/Fingerprints.dir/MACCS.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/MACCS.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/MACCS.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 25%] Built target smaTest1 /usr/bin/gmake -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 25%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/Filters.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK 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-I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o -MF CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o.d -o CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o -c 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MHFP.cpp.o -MF CMakeFiles/Fingerprints.dir/MHFP.cpp.o.d -o CMakeFiles/Fingerprints.dir/MHFP.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/MHFP.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/MHFP.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 26%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o -MF CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o.d -o CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 26%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK 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-DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o -MF CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o.d -o CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 26%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o -MF CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o.d -o CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/MorganGenerator.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/MorganGenerator.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 26%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalogRunner.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalogRunner.cpp.o -MF CMakeFiles/FilterCatalog.dir/FilterCatalogRunner.cpp.o.d -o CMakeFiles/FilterCatalog.dir/FilterCatalogRunner.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog/FilterCatalogRunner.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog/FilterCatalogRunner.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 26%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o -MF CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o.d -o CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 26%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o -MF CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o.d -o CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog/FilterMatchers.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog/FilterMatchers.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 26%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o -MF CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o.d -o CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/FingerprintUtil.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/FingerprintUtil.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 26%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o -MF CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o.d -o CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog/FunctionalGroupHierarchy.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog/FunctionalGroupHierarchy.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 27%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o -MF CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o.d -o CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 27%] Linking CXX shared library ../../../lib/libRDKitFilterCatalog.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/FilterCatalog.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitFilterCatalog.so.1 -o ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 CMakeFiles/FilterCatalog.dir/Filters.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalogRunner.cpp.o CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 27%] Linking CXX shared library ../../../lib/libRDKitFingerprints.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/Fingerprints.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitFingerprints.so.1 -o ../../../lib/libRDKitFingerprints.so.1.2023.03.2 CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o CMakeFiles/Fingerprints.dir/MACCS.cpp.o CMakeFiles/Fingerprints.dir/MHFP.cpp.o CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1 ../../../lib/libRDKitFilterCatalog.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 27%] Built target FilterCatalog /usr/bin/gmake -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 27%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/test1.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/test1.cpp.o -MF CMakeFiles/testSubgraphs1.dir/test1.cpp.o.d -o CMakeFiles/testSubgraphs1.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs/test1.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs/test1.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 27%] Linking CXX executable testSubgraphs1 cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubgraphs1.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testSubgraphs1.dir/test1.cpp.o -o testSubgraphs1 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 27%] Built target testSubgraphs1 /usr/bin/gmake -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs 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-I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/test2.cpp.o -MF CMakeFiles/testSubgraphs2.dir/test2.cpp.o.d -o CMakeFiles/testSubgraphs2.dir/test2.cpp.o -c 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-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/subgraphsCatch.dir/catch_tests.cpp.o -o subgraphsCatch ../../RDGeneral/librdkitCatch.so ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 27%] Built target subgraphsCatch /usr/bin/gmake -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd 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/usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfiltercatalog_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testSubgraphs2.dir/test2.cpp.o -o testSubgraphs2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 27%] Built target testSubgraphs2 /usr/bin/gmake -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build gmake[2]: Entering 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o -MF CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o.d -o CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog/FragCatalogUtils.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog/FragCatalogUtils.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 28%] Building CXX object Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfiltercatalog_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o -MF CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o.d -o CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog/Wrap/FilterCatalog.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog/Wrap/FilterCatalog.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 28%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o -MF CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o.d -o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog/FragCatGenerator.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog/FragCatGenerator.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 29%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o -MF CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o.d -o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog/FragCatalogEntry.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog/FragCatalogEntry.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 29%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o -MF CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o.d -o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog/FragCatParams.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog/FragCatParams.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 29%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o -MF CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o.d -o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog/FragFPGenerator.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog/FragFPGenerator.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 29%] Linking CXX shared library ../../../lib/libRDKitFragCatalog.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/FragCatalog.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitFragCatalog.so.1 -o ../../../lib/libRDKitFragCatalog.so.1.2023.03.2 CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFragCatalog.so.1.2023.03.2 ../../../lib/libRDKitFragCatalog.so.1 ../../../lib/libRDKitFragCatalog.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 29%] Built target FragCatalog /usr/bin/gmake -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 30%] Building CXX object Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdFingerprintGenerator_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o -MF CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o.d -o CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 30%] Linking CXX shared module ../../../../rdkit/Chem/rdfiltercatalog.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdfiltercatalog.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/rdfiltercatalog.so CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o ../../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../../lib/libRDKitCatalogs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp: In function 'boost::python::api::object RDKit::FingerprintWrapper::getBitPathsHelper(const RDKit::AdditionalOutput&)': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp:381:19: warning: redundant move in return statement [-Wredundant-move] 381 | return std::move(res); | ~~~~~~~~~^~~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp:381:19: note: remove 'std::move' call /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp: In function 'boost::python::api::object RDKit::FingerprintWrapper::getBitInfoMapHelper(const RDKit::AdditionalOutput&)': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp:396:19: warning: redundant move in return statement [-Wredundant-move] 396 | return std::move(res); | ~~~~~~~~~^~~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp:396:19: note: remove 'std::move' call gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 30%] Built target rdfiltercatalog /usr/bin/gmake -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 30%] Building CXX object Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/MHFPWrapper.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMHFPFingerprint_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/MHFPWrapper.cpp.o -MF CMakeFiles/rdMHFPFingerprint.dir/MHFPWrapper.cpp.o.d -o CMakeFiles/rdMHFPFingerprint.dir/MHFPWrapper.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap/MHFPWrapper.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap/MHFPWrapper.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 30%] Linking CXX shared module ../../../../rdkit/Chem/rdFingerprintGenerator.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdFingerprintGenerator.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/rdFingerprintGenerator.so CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o ../../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 30%] Built target rdFingerprintGenerator /usr/bin/gmake -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 30%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/test1.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testPartialCharges.dir/test1.cpp.o -o testPartialCharges ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 30%] Built target testPartialCharges /usr/bin/gmake -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 30%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o -MF CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o.d -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 30%] Linking CXX shared module ../../../../rdkit/Chem/rdMHFPFingerprint.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMHFPFingerprint.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/rdMHFPFingerprint.so CMakeFiles/rdMHFPFingerprint.dir/MHFPWrapper.cpp.o ../../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 30%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o -MF CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o.d -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined In member function 'construct', inlined from 'construct' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from '_M_create_node' at /usr/include/c++/13/bits/stl_list.h:713:33, inlined from '_M_insert' at /usr/include/c++/13/bits/stl_list.h:2005:32, inlined from 'push_back' at /usr/include/c++/13/bits/stl_list.h:1306:24, inlined from 'push_dispatch' at /usr/include/boost/pending/container_traits.hpp:574:20, inlined from 'push' at /usr/include/boost/pending/container_traits.hpp:606:29, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:1073:29, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:2258:20, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:2266:20, inlined from 'copy_impl' at /usr/include/boost/graph/detail/adjacency_list.hpp:2193:27, inlined from '__ct ' at /usr/include/boost/graph/detail/adjacency_list.hpp:2118:69, inlined from '__ct ' at /usr/include/boost/graph/adjacency_list.hpp:321:65, inlined from '__ct_base ' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ROMol.h:348:9: /usr/include/c++/13/bits/new_allocator.h:187:11: warning: 'p' may be used uninitialized [-Wmaybe-uninitialized] 187 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^ /usr/include/boost/graph/detail/adjacency_list.hpp: In member function '__ct_base ': /usr/include/boost/graph/detail/adjacency_list.hpp:2265:41: note: 'p' was declared here 2265 | typename Config::edge_property_type p; | ^ [ 31%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -MF CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o.d -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 31%] Built target rdMHFPFingerprint /usr/bin/gmake -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 31%] Building CXX object Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdShapeHelpers_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o -MF CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o.d -o CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 31%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o -MF CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o.d -o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/FeatureParser.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/FeatureParser.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 31%] Linking CXX shared module ../../../../rdkit/Chem/rdShapeHelpers.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdShapeHelpers.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/rdShapeHelpers.so CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o ../../../../lib/libRDKitShapeHelpers.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl In member function '__ct ', inlined from 'getUnionOfTwoBox' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:98:67: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/point.h:66:31: warning: 'MEM [(double *)&D.12526 + 32B]' may be used uninitialized [-Wmaybe-uninitialized] 66 | : Point(other), x(other.x), y(other.y), z(other.z) {} | ^ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp: In function 'getUnionOfTwoBox': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:98:67: note: '' declared here 98 | python::extract(box2.attr("__getitem__")(1)); | ^ In member function '__ct ', inlined from 'getUnionOfTwoBox' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:98:67: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/point.h:66:55: warning: 'MEM[(const struct Point3D &)&D.12526 + 24].z' may be used uninitialized [-Wmaybe-uninitialized] 66 | : Point(other), x(other.x), y(other.y), z(other.z) {} | ^ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp: In function 'getUnionOfTwoBox': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:98:67: note: '' declared here 98 | python::extract(box2.attr("__getitem__")(1)); | ^ In member function '__ct ', inlined from 'getUnionOfTwoBox' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:96:67: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/point.h:66:31: warning: 'MEM [(double *)&D.12522 + 32B]' may be used uninitialized [-Wmaybe-uninitialized] 66 | : Point(other), x(other.x), y(other.y), z(other.z) {} | ^ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp: In function 'getUnionOfTwoBox': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:96:67: note: '' declared here 96 | python::extract(box2.attr("__getitem__")(0)); | ^ In member function '__ct ', inlined from 'getUnionOfTwoBox' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:96:67: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/point.h:66:55: warning: 'MEM[(const struct Point3D &)&D.12522 + 24].z' may be used uninitialized [-Wmaybe-uninitialized] 66 | : Point(other), x(other.x), y(other.y), z(other.z) {} | ^ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp: In function 'getUnionOfTwoBox': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:96:67: note: '' declared here 96 | python::extract(box2.attr("__getitem__")(0)); | ^ In member function '__ct ', inlined from 'getUnionOfTwoBox' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:93:67: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/point.h:66:31: warning: 'MEM [(double *)&D.12518 + 32B]' may be used uninitialized [-Wmaybe-uninitialized] 66 | : Point(other), x(other.x), y(other.y), z(other.z) {} | ^ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp: In function 'getUnionOfTwoBox': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:93:67: note: '' declared here 93 | python::extract(box1.attr("__getitem__")(1)); | ^ In member function '__ct ', inlined from 'getUnionOfTwoBox' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:93:67: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/point.h:66:55: warning: 'MEM[(const struct Point3D &)&D.12518 + 24].z' may be used uninitialized [-Wmaybe-uninitialized] 66 | : Point(other), x(other.x), y(other.y), z(other.z) {} | ^ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp: In function 'getUnionOfTwoBox': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:93:67: note: '' declared here 93 | python::extract(box1.attr("__getitem__")(1)); | ^ In member function '__ct ', inlined from 'getUnionOfTwoBox' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:91:67: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/point.h:66:31: warning: 'MEM [(double *)&D.12514 + 32B]' may be used uninitialized [-Wmaybe-uninitialized] 66 | : Point(other), x(other.x), y(other.y), z(other.z) {} | ^ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp: In function 'getUnionOfTwoBox': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:91:67: note: '' declared here 91 | python::extract(box1.attr("__getitem__")(0)); | ^ In member function '__ct ', inlined from 'getUnionOfTwoBox' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:91:67: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/point.h:66:55: warning: 'MEM[(const struct Point3D &)&D.12514 + 24].z' may be used uninitialized [-Wmaybe-uninitialized] 66 | : Point(other), x(other.x), y(other.y), z(other.z) {} | ^ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp: In function 'getUnionOfTwoBox': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:91:67: note: '' declared here 91 | python::extract(box1.attr("__getitem__")(0)); | ^ [ 31%] Linking CXX shared library ../../../lib/libRDKitMolChemicalFeatures.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolChemicalFeatures.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitMolChemicalFeatures.so.1 -o ../../../lib/libRDKitMolChemicalFeatures.so.1.2023.03.2 CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 31%] Built target rdShapeHelpers /usr/bin/gmake -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 31%] Building CXX object Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolCatalog_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o -MF CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o.d -o CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog/Wrap/rdMolCatalog.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog/Wrap/rdMolCatalog.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolChemicalFeatures.so.1.2023.03.2 ../../../lib/libRDKitMolChemicalFeatures.so.1 ../../../lib/libRDKitMolChemicalFeatures.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 31%] Built target MolChemicalFeatures /usr/bin/gmake -f Code/GraphMol/CIPLabeler/Wrap/CMakeFiles/rdCIPLabeler.dir/build.make Code/GraphMol/CIPLabeler/Wrap/CMakeFiles/rdCIPLabeler.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/Wrap/CMakeFiles/rdCIPLabeler.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/CIPLabeler/Wrap/CMakeFiles/rdCIPLabeler.dir/build.make Code/GraphMol/CIPLabeler/Wrap/CMakeFiles/rdCIPLabeler.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 32%] Building CXX object Code/GraphMol/CIPLabeler/Wrap/CMakeFiles/rdCIPLabeler.dir/rdCIPLabeler.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdCIPLabeler_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/Wrap/CMakeFiles/rdCIPLabeler.dir/rdCIPLabeler.cpp.o -MF CMakeFiles/rdCIPLabeler.dir/rdCIPLabeler.cpp.o.d -o CMakeFiles/rdCIPLabeler.dir/rdCIPLabeler.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/Wrap/rdCIPLabeler.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/Wrap/rdCIPLabeler.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 32%] Linking CXX shared module ../../../../rdkit/Chem/rdCIPLabeler.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdCIPLabeler.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o.d -o CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ReducedGraphs/ReducedGraphs.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ReducedGraphs/ReducedGraphs.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 32%] Linking CXX shared module ../../../../rdkit/Chem/rdMolCatalog.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolCatalog.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/rdMolCatalog.so CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o ../../../../lib/libRDKitMolCatalog.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../../lib/libRDKitCatalogs.so.1.2023.03.2 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 32%] Built target rdMolCatalog /usr/bin/gmake -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 33%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/test.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/test.cpp.o -MF CMakeFiles/testSLNParse.dir/test.cpp.o.d -o CMakeFiles/testSLNParse.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse/test.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse/test.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 34%] Linking CXX shared library ../../../lib/libRDKitReducedGraphs.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/ReducedGraphs.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitReducedGraphs.so.1 -o ../../../lib/libRDKitReducedGraphs.so.1.2023.03.2 CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitReducedGraphs.so.1.2023.03.2 ../../../lib/libRDKitReducedGraphs.so.1 ../../../lib/libRDKitReducedGraphs.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 34%] Built target ReducedGraphs /usr/bin/gmake -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse/Wrap 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-DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSLNParse_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o -MF CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o.d -o CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse/Wrap/rdSLNParse.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse/Wrap/rdSLNParse.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 34%] Linking CXX shared module ../../../../rdkit/Chem/rdSLNParse.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSLNParse.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/rdSLNParse.so CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o ../../../../lib/libRDKitSLNParse.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 34%] Built target rdSLNParse /usr/bin/gmake -f Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/build.make Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Abbreviations /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Abbreviations /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/build.make Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 34%] Building CXX object Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/Abbreviations.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Abbreviations && /usr/bin/g++ -DAbbreviations_EXPORTS -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_ABBREVIATIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/Abbreviations.cpp.o -MF CMakeFiles/Abbreviations.dir/Abbreviations.cpp.o.d -o CMakeFiles/Abbreviations.dir/Abbreviations.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Abbreviations/Abbreviations.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Abbreviations/Abbreviations.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 34%] Linking CXX executable testSLNParse cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSLNParse.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testSLNParse.dir/test.cpp.o -o testSLNParse ../../../lib/libRDKitSLNParse.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 34%] Building CXX object Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/AbbreviationsUtils.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Abbreviations && /usr/bin/g++ -DAbbreviations_EXPORTS -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_ABBREVIATIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong 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Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 35%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/RDDepictor.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Depictor && /usr/bin/g++ 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not defined [ 35%] Linking CXX executable testOptimizer cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_link_script CMakeFiles/testOptimizer.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o -o testOptimizer 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Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Depictor && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDepictor_EXPORTS -DRDKIT_DEPICTOR_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection 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/builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/ForceField.cpp:289:24: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Optimizer/BFGSOpt.h:273:36: warning: 'finalForce' may be used uninitialized [-Wmaybe-uninitialized] 273 | double term = std::max(funcVal * gradScale, 1.0); | ~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/ForceField.cpp: In member function 'ForceFields::ForceField::minimize(unsigned int, std::vector >*, unsigned int, double, double)': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/ForceField.cpp:281:10: note: 'finalForce' was declared here 281 | double finalForce; | ^~~~~~~~~~ [ 35%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD 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CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/UFF/AngleBend.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/UFF/AngleBend.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 35%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o -MF CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o.d -o CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/UFF/BondStretch.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/UFF/BondStretch.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 35%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG 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CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DepictUtils.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Depictor && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDepictor_EXPORTS -DRDKIT_DEPICTOR_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DepictUtils.cpp.o -MF CMakeFiles/Depictor.dir/DepictUtils.cpp.o.d -o CMakeFiles/Depictor.dir/DepictUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Depictor/DepictUtils.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Depictor/DepictUtils.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 35%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED 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&& /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC 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defined [ 36%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables 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Code/ForceField/CMakeFiles/ForceField.dir/UFF/Params.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection 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annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/MMFF/AngleBend.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 36%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o -MF CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o.d -o CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/MMFF/BondStretch.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/MMFF/BondStretch.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1 ../../../lib/libRDKitDepictor.so gmake[2]: Leaving directory 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'/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 36%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolAlign_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLALIGN_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o -MF CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o.d -o CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign/AlignMolecules.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign/AlignMolecules.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 36%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT 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-pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o -MF CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o.d -o CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/MMFF/OopBend.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/MMFF/OopBend.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 37%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField && /usr/bin/g++ 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-fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o -MF CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o.d -o CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/MMFF/TorsionAngle.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/MMFF/TorsionAngle.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 37%] Linking CXX shared library ../../../lib/libRDKitMolAlign.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolAlign.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitMolAlign.so.1 -o ../../../lib/libRDKitMolAlign.so.1.2023.03.2 CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 37%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o -MF CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o.d -o CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/MMFF/Nonbonded.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/MMFF/Nonbonded.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../lib/libRDKitMolAlign.so.1 ../../../lib/libRDKitMolAlign.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 37%] Built target MolAlign /usr/bin/gmake -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 38%] Building CXX object Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o cd 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-Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o -MF CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o.d -o CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/querytest.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/querytest.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 38%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o -MF CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o.d -o CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/MMFF/DistanceConstraint.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/MMFF/DistanceConstraint.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 38%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o -MF CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o.d -o CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/MMFF/AngleConstraint.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/MMFF/AngleConstraint.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 38%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o -MF CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o.d -o CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/MMFF/TorsionConstraint.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/MMFF/TorsionConstraint.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 38%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o -MF CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o.d -o CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/MMFF/PositionConstraint.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/MMFF/PositionConstraint.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 38%] Linking CXX executable graphmolqueryTest cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolqueryTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o -o graphmolqueryTest ../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 38%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Params.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Params.cpp.o -MF CMakeFiles/ForceField.dir/MMFF/Params.cpp.o.d -o CMakeFiles/ForceField.dir/MMFF/Params.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/MMFF/Params.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/MMFF/Params.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 38%] Built target graphmolqueryTest /usr/bin/gmake -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Depictor/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Depictor/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 38%] Building CXX object Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Depictor/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdDepictor_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o -MF CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o.d -o CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 38%] Linking CXX shared library ../../lib/libRDKitForceField.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField && /usr/bin/cmake -E cmake_link_script CMakeFiles/ForceField.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitForceField.so.1 -o ../../lib/libRDKitForceField.so.1.2023.03.2 CMakeFiles/ForceField.dir/ForceField.cpp.o CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/Params.cpp.o CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/Params.cpp.o ../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl In function 'minimize', inlined from 'minimize' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/ForceField.cpp:289:24: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Optimizer/BFGSOpt.h:273:36: warning: 'finalForce' may be used uninitialized [-Wmaybe-uninitialized] 273 | double term = std::max(funcVal * gradScale, 1.0); | ^ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/ForceField.cpp: In member function 'minimize': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/ForceField.cpp:281:10: note: 'finalForce' was declared here 281 | double finalForce; | ^ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp: In function 'void RDDepict::setPreferCoordGen(bool)': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp:154:29: warning: unused parameter 'value' [-Wunused-parameter] 154 | void setPreferCoordGen(bool value) { | ~~~~~^~~~~ [ 39%] Linking CXX shared module ../../../../rdkit/Chem/rdDepictor.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Depictor/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdDepictor.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/rdDepictor.so CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitForceField.so.1.2023.03.2 ../../lib/libRDKitForceField.so.1 ../../lib/libRDKitForceField.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 39%] Built target ForceField /usr/bin/gmake -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 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../../../../rdkit/Chem/rdAbbreviations.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Abbreviations/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdAbbreviations.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/rdAbbreviations.so CMakeFiles/rdAbbreviations.dir/rdAbbreviations.cpp.o ../../../../lib/libRDKitAbbreviations.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/Wrap/ChemicalFeatureUtils.cpp: In function 'boost::python::api::object RDKit::GetAtomMatch(boost::python::api::object, int)': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/Wrap/ChemicalFeatureUtils.cpp:45:19: warning: redundant move in return statement [-Wredundant-move] 45 | return std::move(res); | ~~~~~~~~~^~~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/Wrap/ChemicalFeatureUtils.cpp:45:19: note: remove 'std::move' call [ 41%] Linking CXX shared module ../../../../rdkit/Chem/rdMolChemicalFeatures.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolChemicalFeatures.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection 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../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 41%] Built target rdMolChemicalFeatures /usr/bin/gmake -f External/INCHI-API/CMakeFiles/RDInchiLib.dir/build.make External/INCHI-API/CMakeFiles/RDInchiLib.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2023_03_2 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-I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT External/INCHI-API/CMakeFiles/RDInchiLib.dir/inchi.cpp.o -MF CMakeFiles/RDInchiLib.dir/inchi.cpp.o.d -o CMakeFiles/RDInchiLib.dir/inchi.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/External/INCHI-API/inchi.cpp annobin: 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CMakeFiles/RDInchiLib.dir/inchi.cpp.o /usr/lib64/libinchi.so ../../lib/libRDKitDepictor.so.1.2023.03.2 ../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/External/INCHI-API && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDInchiLib.so.1.2023.03.2 ../../lib/libRDKitRDInchiLib.so.1 ../../lib/libRDKitRDInchiLib.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 41%] Built target RDInchiLib /usr/bin/gmake -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make 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Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic 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CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o.d -o CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemTransforms/MolFragmenter.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemTransforms/MolFragmenter.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 43%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o -MF CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o.d -o CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/UFF/Builder.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/UFF/Builder.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 43%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong 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/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitChemTransforms.so.1 -o ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 43%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o -MF CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o.d -o CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/MMFF/Builder.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/MMFF/Builder.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1 ../../../lib/libRDKitChemTransforms.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 43%] Built target ChemTransforms /usr/bin/gmake -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 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Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/CDXMLParser.cpp.o -MF CMakeFiles/FileParsers.dir/CDXMLParser.cpp.o.d -o CMakeFiles/FileParsers.dir/CDXMLParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/CDXMLParser.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/CDXMLParser.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 44%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o -MF CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o.d -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 44%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security 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Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitForceFieldHelpers.so.1 -o ../../../lib/libRDKitForceFieldHelpers.so.1.2023.03.2 CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitForceField.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 44%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileParser.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileParser.cpp.o -MF CMakeFiles/FileParsers.dir/MolFileParser.cpp.o.d -o CMakeFiles/FileParsers.dir/MolFileParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/MolFileParser.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/MolFileParser.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitForceFieldHelpers.so.1.2023.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1 ../../../lib/libRDKitForceFieldHelpers.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 44%] Built target ForceFieldHelpers /usr/bin/gmake -f External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build.make External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/External/INCHI-API/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/External/INCHI-API/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build.make External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 45%] Building CXX object External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/pyInchi.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/External/INCHI-API/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK 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-mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../rdkit/Chem/rdinchi.so CMakeFiles/rdinchi.dir/pyInchi.cpp.o ../../../lib/libRDKitRDInchiLib.so.1.2023.03.2 ../../../lib/libRDKitRDBoost.so.1.2023.03.2 /usr/lib64/libinchi.so ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 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Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 45%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DistGeom && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/DistGeom/CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o -MF CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o.d -o CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DistGeom/DistGeomUtils.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DistGeom/DistGeomUtils.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 45%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DistGeom && /usr/bin/g++ 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-D_GLIBCXX_ASSERTIONS not defined [ 45%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DistGeom && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitDistGeometry.so.1 -o ../../lib/libRDKitDistGeometry.so.1.2023.03.2 CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o ../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../lib/libRDKitForceFieldHelpers.so.1.2023.03.2 ../../lib/libRDKitForceField.so.1.2023.03.2 ../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.78.0 [ 45%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolSGroupParsing.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolSGroupParsing.cpp.o -MF CMakeFiles/FileParsers.dir/MolSGroupParsing.cpp.o.d -o CMakeFiles/FileParsers.dir/MolSGroupParsing.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/MolSGroupParsing.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/MolSGroupParsing.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DistGeom && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitDistGeometry.so.1.2023.03.2 ../../lib/libRDKitDistGeometry.so.1 ../../lib/libRDKitDistGeometry.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 45%] Built target DistGeometry /usr/bin/gmake -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 45%] Building CXX object Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/ForceField.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT 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Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o.d -o CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/MolFileWriter.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/MolFileWriter.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 46%] Linking CXX shared module ../../../rdkit/DistanceGeometry/DistGeom.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DistGeom/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeom.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer 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../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 46%] Built target DistGeom /usr/bin/gmake -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 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CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp: In function 'boost::python::api::object RDKit::UFFConfsHelper(ROMol&, int, int, double, bool)': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp:49:19: warning: redundant move in return statement [-Wredundant-move] 49 | return std::move(pyres); | ~~~~~~~~~^~~~~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp:49:19: note: remove 'std::move' call /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp: In function 'boost::python::api::object RDKit::MMFFConfsHelper(ROMol&, int, int, std::string, double, bool)': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp:66:19: warning: redundant move in return statement [-Wredundant-move] 66 | return std::move(pyres); | ~~~~~~~~~^~~~~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp:66:19: note: remove 'std::move' call /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp: In function 'boost::python::api::object RDKit::FFConfsHelper(ROMol&, ForceFields::PyForceField&, int, int)': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp:86:19: warning: redundant move in return statement [-Wredundant-move] 86 | return std::move(pyres); | ~~~~~~~~~^~~~~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp:86:19: note: remove 'std::move' call [ 46%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 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CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o ../../../../lib/libRDKitForceFieldHelpers.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitForceField.so.1.2023.03.2 ../../../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 46%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o -MF CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o.d -o CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/SDMolSupplier.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/SDMolSupplier.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 46%] Built target rdForceFieldHelpers /usr/bin/gmake -f Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 46%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/O3AAlignMolecules.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DO3AAlign_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLALIGN_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT 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-I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDWriter.cpp.o -MF CMakeFiles/FileParsers.dir/SDWriter.cpp.o.d -o CMakeFiles/FileParsers.dir/SDWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/SDWriter.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/SDWriter.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 47%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o -MF CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o.d -o CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/SmilesMolSupplier.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/SmilesMolSupplier.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 47%] Linking CXX shared library ../../../lib/libRDKitO3AAlign.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/O3AAlign.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitO3AAlign.so.1 -o ../../../lib/libRDKitO3AAlign.so.1.2023.03.2 CMakeFiles/O3AAlign.dir/O3AAlignMolecules.cpp.o ../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitForceField.so.1.2023.03.2 ../../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitO3AAlign.so.1.2023.03.2 ../../../lib/libRDKitO3AAlign.so.1 ../../../lib/libRDKitO3AAlign.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 47%] Built target 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-std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MultithreadedSDMolSupplier.cpp.o -MF CMakeFiles/FileParsers.dir/MultithreadedSDMolSupplier.cpp.o.d -o CMakeFiles/FileParsers.dir/MultithreadedSDMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/MultithreadedSDMolSupplier.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/MultithreadedSDMolSupplier.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 50%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/StereoGroup.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/StereoGroup.cpp.o -MF CMakeFiles/rdchem.dir/StereoGroup.cpp.o.d -o CMakeFiles/rdchem.dir/StereoGroup.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/StereoGroup.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/StereoGroup.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 50%] Linking CXX shared library ../../../lib/libRDKitFileParsers.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/FileParsers.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld 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CMakeFiles/FileParsers.dir/PDBParser.cpp.o CMakeFiles/FileParsers.dir/PDBWriter.cpp.o CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o CMakeFiles/FileParsers.dir/CMLWriter.cpp.o CMakeFiles/FileParsers.dir/XYZFileWriter.cpp.o CMakeFiles/FileParsers.dir/XYZFileParser.cpp.o CMakeFiles/FileParsers.dir/MaeMolSupplier.cpp.o CMakeFiles/FileParsers.dir/MaeWriter.cpp.o CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o CMakeFiles/FileParsers.dir/SVGParser.cpp.o CMakeFiles/FileParsers.dir/PNGParser.cpp.o CMakeFiles/FileParsers.dir/MultithreadedMolSupplier.cpp.o CMakeFiles/FileParsers.dir/MultithreadedSmilesMolSupplier.cpp.o CMakeFiles/FileParsers.dir/MultithreadedSDMolSupplier.cpp.o ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 50%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/SubstanceGroup.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/SubstanceGroup.cpp.o -MF CMakeFiles/rdchem.dir/SubstanceGroup.cpp.o.d -o CMakeFiles/rdchem.dir/SubstanceGroup.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/SubstanceGroup.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/SubstanceGroup.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 50%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Chirality.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Chirality.cpp.o -MF CMakeFiles/rdchem.dir/Chirality.cpp.o.d -o CMakeFiles/rdchem.dir/Chirality.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/Chirality.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/Chirality.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 50%] Linking CXX shared module ../../../rdkit/Chem/rdchem.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdchem.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../rdkit/Chem/rdchem.so CMakeFiles/rdchem.dir/rdchem.cpp.o CMakeFiles/rdchem.dir/Table.cpp.o CMakeFiles/rdchem.dir/Atom.cpp.o CMakeFiles/rdchem.dir/Bond.cpp.o CMakeFiles/rdchem.dir/Mol.cpp.o CMakeFiles/rdchem.dir/Conformer.cpp.o CMakeFiles/rdchem.dir/RingInfo.cpp.o CMakeFiles/rdchem.dir/EditableMol.cpp.o CMakeFiles/rdchem.dir/MonomerInfo.cpp.o CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o CMakeFiles/rdchem.dir/MolBundle.cpp.o CMakeFiles/rdchem.dir/StereoGroup.cpp.o CMakeFiles/rdchem.dir/SubstanceGroup.cpp.o CMakeFiles/rdchem.dir/Chirality.cpp.o ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1 ../../../lib/libRDKitFileParsers.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 50%] Built target FileParsers /usr/bin/gmake -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 50%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Crippen.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Crippen.cpp.o -MF CMakeFiles/Descriptors.dir/Crippen.cpp.o.d -o CMakeFiles/Descriptors.dir/Crippen.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors/Crippen.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors/Crippen.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined In member function '__ct ', inlined from 'dereference' at /usr/include/boost/python/stl_iterator.hpp:48:61, inlined from 'dereference' at /usr/include/boost/iterator/iterator_facade.hpp:550:32, inlined from 'operator*' at /usr/include/boost/iterator/iterator_facade.hpp:656:69, inlined from 'addBracketHelper' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/SubstanceGroup.cpp:73:14: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/point.h:66:31: warning: 'MEM[(const struct Point3D &)&D.20606 + 24].x' may be used uninitialized [-Wmaybe-uninitialized] 66 | : Point(other), x(other.x), y(other.y), z(other.z) {} | ^ /usr/include/boost/python/stl_iterator.hpp: In function 'addBracketHelper': /usr/include/boost/python/stl_iterator.hpp:48:16: note: '' declared here 48 | return extract(this->impl_.current().get())(); | ^ In member function '__ct ', inlined from 'dereference' at /usr/include/boost/python/stl_iterator.hpp:48:61, inlined from 'dereference' at /usr/include/boost/iterator/iterator_facade.hpp:550:32, inlined from 'operator*' at /usr/include/boost/iterator/iterator_facade.hpp:656:69, inlined from 'addBracketHelper' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/SubstanceGroup.cpp:73:14: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/point.h:66:43: warning: 'MEM[(const struct Point3D &)&D.20606 + 24].y' may be used uninitialized [-Wmaybe-uninitialized] 66 | : Point(other), x(other.x), y(other.y), z(other.z) {} | ^ /usr/include/boost/python/stl_iterator.hpp: In function 'addBracketHelper': /usr/include/boost/python/stl_iterator.hpp:48:16: note: '' declared here 48 | return extract(this->impl_.current().get())(); | ^ In member function '__ct ', inlined from 'dereference' at /usr/include/boost/python/stl_iterator.hpp:48:61, inlined from 'dereference' at /usr/include/boost/iterator/iterator_facade.hpp:550:32, inlined from 'operator*' at /usr/include/boost/iterator/iterator_facade.hpp:656:69, inlined from 'addBracketHelper' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/SubstanceGroup.cpp:73:14: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/point.h:66:55: warning: 'MEM[(const struct Point3D &)&D.20606 + 24].z' may be used uninitialized [-Wmaybe-uninitialized] 66 | : Point(other), x(other.x), y(other.y), z(other.z) {} | ^ /usr/include/boost/python/stl_iterator.hpp: In function 'addBracketHelper': /usr/include/boost/python/stl_iterator.hpp:48:16: note: '' declared here 48 | return extract(this->impl_.current().get())(); | ^ [ 50%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/BCUT.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables 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Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o -MF CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o.d -o CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors/MolDescriptors.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors/MolDescriptors.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 51%] Built target rdchem [ 51%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolSurf.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT 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Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Lipinski.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 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Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security 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../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 53%] Linking CXX executable graphmolTest1 cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolTest1.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/graphmolTest1.dir/test1.cpp.o -o graphmolTest1 ../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../lib/libRDKitForceFieldHelpers.so.1.2023.03.2 ../../lib/libRDKitForceField.so.1.2023.03.2 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/usr/lib64/libboost_serialization.so.1.78.0 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 53%] Built target graphmoltestChirality /usr/bin/gmake -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 53%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o -MF CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o.d -o CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/testPickler.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/testPickler.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 53%] Linking CXX executable graphmolMolOpsTest cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolMolOpsTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o -o graphmolMolOpsTest ../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../lib/libRDKitDepictor.so.1.2023.03.2 ../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so [ 53%] Linking CXX executable graphmoltestPickler cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestPickler.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o -o graphmoltestPickler ../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../lib/libRDKitDepictor.so.1.2023.03.2 ../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so In member function 'construct', inlined from 'construct' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from '_M_create_node' at /usr/include/c++/13/bits/stl_list.h:713:33, inlined from '_M_insert' at /usr/include/c++/13/bits/stl_list.h:2005:32, inlined from 'push_back' at /usr/include/c++/13/bits/stl_list.h:1306:24, inlined from 'push_dispatch' at /usr/include/boost/pending/container_traits.hpp:574:20, inlined from 'push' at /usr/include/boost/pending/container_traits.hpp:606:29, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:1073:29, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:2258:20, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:2266:20, inlined from 'copy_impl' at /usr/include/boost/graph/detail/adjacency_list.hpp:2193:27, inlined from '__ct ' at /usr/include/boost/graph/detail/adjacency_list.hpp:2118:69, inlined from '__ct ' at /usr/include/boost/graph/adjacency_list.hpp:321:65, inlined from '__ct_base ' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ROMol.h:348:9: /usr/include/c++/13/bits/new_allocator.h:187:11: warning: 'p' may be used uninitialized [-Wmaybe-uninitialized] 187 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^ /usr/include/boost/graph/detail/adjacency_list.hpp: In member function '__ct_base ': /usr/include/boost/graph/detail/adjacency_list.hpp:2265:41: note: 'p' was declared here 2265 | typename Config::edge_property_type p; | ^ gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 53%] Built target graphmoltestPickler /usr/bin/gmake -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 53%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o -MF CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o.d -o CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/testPicklerGlobalSettings.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/testPicklerGlobalSettings.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 53%] Linking CXX executable graphmoltestPicklerGlobalSetting cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestPicklerGlobalSetting.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o -o graphmoltestPicklerGlobalSetting ../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../lib/libRDKitDepictor.so.1.2023.03.2 ../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 53%] Built target graphmoltestPicklerGlobalSetting /usr/bin/gmake -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CMakeFiles/hanoiTest.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 54%] Building CXX object Code/GraphMol/CMakeFiles/hanoiTest.dir/hanoitest.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/hanoiTest.dir/hanoitest.cpp.o -MF CMakeFiles/hanoiTest.dir/hanoitest.cpp.o.d -o CMakeFiles/hanoiTest.dir/hanoitest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/hanoitest.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/hanoitest.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 54%] Built target graphmolMolOpsTest /usr/bin/gmake -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 55%] Building CXX object Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o -MF CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o.d -o CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/resMolSupplierTest.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/resMolSupplierTest.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 55%] Linking CXX executable resMolSupplierTest cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/resMolSupplierTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o -o resMolSupplierTest ../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../lib/libRDKitDepictor.so.1.2023.03.2 ../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so [ 55%] Linking CXX executable hanoiTest cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/hanoiTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall 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../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 55%] Built target resMolSupplierTest /usr/bin/gmake -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2 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-I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o -MF CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o.d -o CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/testMolBundle.cpp annobin: 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Code/GraphMol/CMakeFiles/testSGroup.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 56%] Building CXX object Code/GraphMol/CMakeFiles/testSGroup.dir/testSGroup.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/testSGroup.dir/testSGroup.cpp.o -MF CMakeFiles/testSGroup.dir/testSGroup.cpp.o.d -o CMakeFiles/testSGroup.dir/testSGroup.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/testSGroup.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/testSGroup.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 56%] Linking CXX executable molBundleTest cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/molBundleTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o -o molBundleTest ../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../lib/libRDKitDepictor.so.1.2023.03.2 ../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../lib/libRDKitGenericGroups.so.1.2023.03.2 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/builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/catch_graphmol.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/catch_graphmol.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 56%] Linking CXX executable testSGroup cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSGroup.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld 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object Code/GraphMol/CMakeFiles/graphmolOrganometallicsCatch.dir/catch_organometallics.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/graphmolOrganometallicsCatch.dir/catch_organometallics.cpp.o -MF CMakeFiles/graphmolOrganometallicsCatch.dir/catch_organometallics.cpp.o.d -o CMakeFiles/graphmolOrganometallicsCatch.dir/catch_organometallics.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/catch_organometallics.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/catch_organometallics.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 57%] Linking CXX executable graphmolOrganometallicsCatch cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolOrganometallicsCatch.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/graphmolOrganometallicsCatch.dir/catch_organometallics.cpp.o -o graphmolOrganometallicsCatch ../RDGeneral/librdkitCatch.so ../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../lib/libRDKitDepictor.so.1.2023.03.2 ../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 57%] Built target graphmolOrganometallicsCatch /usr/bin/gmake -f Code/GraphMol/CMakeFiles/graphmolSGroupCatch.dir/build.make Code/GraphMol/CMakeFiles/graphmolSGroupCatch.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CMakeFiles/graphmolSGroupCatch.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/CMakeFiles/graphmolSGroupCatch.dir/build.make Code/GraphMol/CMakeFiles/graphmolSGroupCatch.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 57%] Building CXX object Code/GraphMol/CMakeFiles/graphmolSGroupCatch.dir/catch_sgroups.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK 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CMakeFiles/graphmolSGroupCatch.dir/catch_sgroups.cpp.o.d -o CMakeFiles/graphmolSGroupCatch.dir/catch_sgroups.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/catch_sgroups.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/catch_sgroups.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 57%] Linking CXX executable graphmolTestsCatch cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolTestsCatch.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/graphmolTestsCatch.dir/catch_graphmol.cpp.o -o graphmolTestsCatch ../RDGeneral/librdkitCatch.so ../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../lib/libRDKitDepictor.so.1.2023.03.2 ../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so In member function 'construct', inlined from 'construct' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from '_M_create_node' at /usr/include/c++/13/bits/stl_list.h:713:33, inlined from '_M_insert' at /usr/include/c++/13/bits/stl_list.h:2005:32, inlined from 'push_back' at /usr/include/c++/13/bits/stl_list.h:1306:24, inlined from 'push_dispatch' at /usr/include/boost/pending/container_traits.hpp:574:20, inlined from 'push' at /usr/include/boost/pending/container_traits.hpp:606:29, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:1073:29, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:2258:20, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:2266:20, inlined from 'copy_impl' at /usr/include/boost/graph/detail/adjacency_list.hpp:2193:27: /usr/include/c++/13/bits/new_allocator.h:187:11: warning: 'p' may be used uninitialized [-Wmaybe-uninitialized] 187 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^ /usr/include/boost/graph/detail/adjacency_list.hpp: In member function 'copy_impl': /usr/include/boost/graph/detail/adjacency_list.hpp:2265:41: note: 'p' was declared here 2265 | typename Config::edge_property_type p; | ^ [ 57%] Linking CXX executable graphmolSGroupCatch cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolSGroupCatch.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/graphmolSGroupCatch.dir/catch_sgroups.cpp.o -o graphmolSGroupCatch ../RDGeneral/librdkitCatch.so ../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../lib/libRDKitDepictor.so.1.2023.03.2 ../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 57%] Built target graphmolSGroupCatch /usr/bin/gmake -f Code/GraphMol/CMakeFiles/graphmolAdjustQueryCatch.dir/build.make Code/GraphMol/CMakeFiles/graphmolAdjustQueryCatch.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CMakeFiles/graphmolAdjustQueryCatch.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f 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-grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/graphmolAdjustQueryCatch.dir/catch_adjustquery.cpp.o -MF CMakeFiles/graphmolAdjustQueryCatch.dir/catch_adjustquery.cpp.o.d -o CMakeFiles/graphmolAdjustQueryCatch.dir/catch_adjustquery.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/catch_adjustquery.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/catch_adjustquery.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 57%] Built target graphmolTestsCatch /usr/bin/gmake -f Code/GraphMol/CMakeFiles/chiralityTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/chiralityTestsCatch.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CMakeFiles/chiralityTestsCatch.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/CMakeFiles/chiralityTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/chiralityTestsCatch.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 57%] Building CXX object Code/GraphMol/CMakeFiles/chiralityTestsCatch.dir/catch_chirality.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/graphmolAdjustQueryCatch.dir/catch_adjustquery.cpp.o -o graphmolAdjustQueryCatch ../RDGeneral/librdkitCatch.so ../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../lib/libRDKitDepictor.so.1.2023.03.2 ../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 58%] Built target graphmolAdjustQueryCatch /usr/bin/gmake -f Code/GraphMol/CMakeFiles/canonTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/canonTestsCatch.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CMakeFiles/canonTestsCatch.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/CMakeFiles/canonTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/canonTestsCatch.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 59%] Building CXX object Code/GraphMol/CMakeFiles/canonTestsCatch.dir/catch_canon.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION 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../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.78.0 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 61%] Built target nontetrahedralCatch /usr/bin/gmake -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Depictor 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/builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/testMolSupplier.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/testMolSupplier.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 62%] Linking CXX executable testMolSupplier cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolSupplier.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o -o testMolSupplier ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitRDStreams.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.78.0 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libz.so 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/testGeneralFileReader.dir/testGeneralFileReader.cpp.o -MF CMakeFiles/testGeneralFileReader.dir/testGeneralFileReader.cpp.o.d -o CMakeFiles/testGeneralFileReader.dir/testGeneralFileReader.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/testGeneralFileReader.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/testGeneralFileReader.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 62%] Linking CXX executable testGeneralFileReader cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testGeneralFileReader.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testGeneralFileReader.dir/testGeneralFileReader.cpp.o -o testGeneralFileReader ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitRDStreams.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.78.0 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libz.so /usr/lib64/libboost_iostreams.so.1.78.0 gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 62%] Built target testGeneralFileReader /usr/bin/gmake -f Code/GraphMol/FileParsers/CMakeFiles/testMultithreadedMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMultithreadedMolSupplier.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/CMakeFiles/testMultithreadedMolSupplier.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/FileParsers/CMakeFiles/testMultithreadedMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMultithreadedMolSupplier.dir/build gmake[2]: Entering directory 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/testMultithreadedMolSupplier.dir/testMultithreadedMolSupplier.cpp.o -MF CMakeFiles/testMultithreadedMolSupplier.dir/testMultithreadedMolSupplier.cpp.o.d -o CMakeFiles/testMultithreadedMolSupplier.dir/testMultithreadedMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/testMultithreadedMolSupplier.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/testMultithreadedMolSupplier.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 62%] Linking CXX executable fileParsersTest1 cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileParsersTest1.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/fileParsersTest1.dir/test1.cpp.o -o fileParsersTest1 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.78.0 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so [ 63%] Linking CXX executable testMultithreadedMolSupplier cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMultithreadedMolSupplier.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testMultithreadedMolSupplier.dir/testMultithreadedMolSupplier.cpp.o -o testMultithreadedMolSupplier ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitRDStreams.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_iostreams.so.1.78.0 gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 63%] Built target testMultithreadedMolSupplier /usr/bin/gmake -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make 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Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o -MF CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o.d -o CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/testMolWriter.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/testMolWriter.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 63%] Built target fileParsersTest1 /usr/bin/gmake -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 63%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/testTpls.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/testTpls.cpp.o -MF CMakeFiles/testTplParser.dir/testTpls.cpp.o.d -o CMakeFiles/testTplParser.dir/testTpls.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/testTpls.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/testTpls.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 63%] Linking CXX executable testMolWriter cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolWriter.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic 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../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.78.0 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so [ 64%] Linking CXX executable testTplParser cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testTplParser.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testTplParser.dir/testTpls.cpp.o -o testTplParser ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.78.0 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 64%] Built target testTplParser /usr/bin/gmake -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 65%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o -MF CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o.d -o CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/testMol2ToMol.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/testMol2ToMol.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 65%] Built target testMolWriter /usr/bin/gmake -f 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Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/testSequence.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.78.0 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 65%] Built target testSequence /usr/bin/gmake -f Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers 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-DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/testExtendedStereoParsing.cpp.o -MF CMakeFiles/testExtendedStereoParsing.dir/testExtendedStereoParsing.cpp.o.d -o CMakeFiles/testExtendedStereoParsing.dir/testExtendedStereoParsing.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/testExtendedStereoParsing.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/testExtendedStereoParsing.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 65%] Linking CXX executable testMol2ToMol cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMol2ToMol.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o -o testMol2ToMol ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.78.0 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 65%] Built target testMol2ToMol /usr/bin/gmake -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/DependInfo.cmake --color= gmake[2]: 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Code/GraphMol/FileParsers/CMakeFiles/XYZFileParserCatchTest.dir/XYZFileParserCatchTest.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong 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../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.78.0 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so [ 66%] Linking CXX executable fileParsersCatchTest cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileParsersCatchTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 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../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.78.0 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so [ 66%] Linking CXX executable testSubstructMatch cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubstructMatch.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto 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../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.78.0 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 66%] Built target substructTestCatch /usr/bin/gmake -f Code/GraphMol/GenericGroups/CMakeFiles/testGenericGroups.dir/build.make Code/GraphMol/GenericGroups/CMakeFiles/testGenericGroups.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Reaction.cpp.o -MF CMakeFiles/ChemReactions.dir/Reaction.cpp.o.d -o CMakeFiles/ChemReactions.dir/Reaction.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/Reaction.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/Reaction.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 66%] Linking CXX executable testGenericGroups cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/GenericGroups && /usr/bin/cmake -E cmake_link_script CMakeFiles/testGenericGroups.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection 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../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so [ 66%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MDLParser.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code 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Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 66%] Built target testGenericGroups /usr/bin/gmake -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f 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Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o -o testChemTransforms ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so [ 68%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 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cmake_link_script CMakeFiles/chemTransformsTestCatch.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/chemTransformsTestCatch.dir/catch_tests.cpp.o -o chemTransformsTestCatch ../../RDGeneral/librdkitCatch.so ../../../lib/libRDKitFileParsers.so.1.2023.03.2 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../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so [ 69%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION 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Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o -MF CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o.d -o CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog/Wrap/FragCatGenerator.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog/Wrap/FragCatGenerator.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 70%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 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-I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o -MF CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o.d -o CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o -c 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-Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/rdfragcatalog.so CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o ../../../../lib/libRDKitFragCatalog.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 70%] Built target rdfragcatalog /usr/bin/gmake -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make 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Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/test.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o CMakeFiles/ChemReactions.dir/PNGParser.cpp.o CMakeFiles/ChemReactions.dir/CDXMLParser.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 70%] Linking CXX executable testDescriptors cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDescriptors.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testDescriptors.dir/test.cpp.o -o testDescriptors ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitChemReactions.so.1 ../../../lib/libRDKitChemReactions.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 70%] Built target 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'/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 70%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/testAUTOCORR2D.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security 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CMakeFiles/testAUTOCORR2D.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testAUTOCORR2D.dir/testAUTOCORR2D.cpp.o -o testAUTOCORR2D ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 70%] Built target testDescriptors /usr/bin/gmake -f Code/GraphMol/Descriptors/CMakeFiles/testATF.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testATF.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors/CMakeFiles/testATF.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/Descriptors/CMakeFiles/testATF.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testATF.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 71%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testATF.dir/testATF.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection 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Code/GraphMol/Descriptors/CMakeFiles/testBCUT.dir/testBCUT.cpp.o -MF CMakeFiles/testBCUT.dir/testBCUT.cpp.o.d -o CMakeFiles/testBCUT.dir/testBCUT.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors/testBCUT.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors/testBCUT.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 72%] Linking CXX executable testATF cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testATF.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testATF.dir/testATF.cpp.o -o testATF ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 72%] Built target testATF /usr/bin/gmake -f Code/GraphMol/Descriptors/CMakeFiles/descriptorsTestCatch.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/descriptorsTestCatch.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors 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../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 72%] Built target testBCUT /usr/bin/gmake -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors/Wrap 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../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 72%] Built target descriptorsTestCatch /usr/bin/gmake -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2023_03_2 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CMakeFiles/testFingerprints.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/test1.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/test1.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 73%] Linking CXX shared module ../../../../rdkit/Chem/rdMolDescriptors.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolDescriptors.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing 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../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 73%] Linking CXX executable testFingerprints cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFingerprints.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testFingerprints.dir/test1.cpp.o -o testFingerprints ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 73%] Built target rdMolDescriptors /usr/bin/gmake -f Code/GraphMol/Fingerprints/CMakeFiles/testMHFPFingerprint.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testMHFPFingerprint.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/CMakeFiles/testMHFPFingerprint.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/Fingerprints/CMakeFiles/testMHFPFingerprint.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testMHFPFingerprint.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 73%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/testMHFPFingerprint.dir/testMHFPFingerprint.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK 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-fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/testMHFPFingerprint.dir/testMHFPFingerprint.cpp.o -MF CMakeFiles/testMHFPFingerprint.dir/testMHFPFingerprint.cpp.o.d -o CMakeFiles/testMHFPFingerprint.dir/testMHFPFingerprint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/testMHFPFingerprint.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/testMHFPFingerprint.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 73%] Built target testFingerprints /usr/bin/gmake -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix 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-DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/testFingerprintGenerators.cpp.o -MF CMakeFiles/testFingerprintGenerators.dir/testFingerprintGenerators.cpp.o.d -o CMakeFiles/testFingerprintGenerators.dir/testFingerprintGenerators.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/testFingerprintGenerators.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/testFingerprintGenerators.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 73%] Linking CXX executable testMHFPFingerprint cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMHFPFingerprint.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testMHFPFingerprint.dir/testMHFPFingerprint.cpp.o -o testMHFPFingerprint ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 73%] Built target testMHFPFingerprint /usr/bin/gmake -f Code/GraphMol/Fingerprints/CMakeFiles/fpTestCatch.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/fpTestCatch.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 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-DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/fpTestCatch.dir/catch_tests.cpp.o -MF CMakeFiles/fpTestCatch.dir/catch_tests.cpp.o.d -o CMakeFiles/fpTestCatch.dir/catch_tests.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/catch_tests.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/catch_tests.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 73%] Linking CXX executable fpTestCatch cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/fpTestCatch.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/fpTestCatch.dir/catch_tests.cpp.o -o fpTestCatch ../../RDGeneral/librdkitCatch.so ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so [ 73%] Linking CXX executable testFingerprintGenerators cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFingerprintGenerators.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testFingerprintGenerators.dir/testFingerprintGenerators.cpp.o -o testFingerprintGenerators ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 73%] Built target fpTestCatch /usr/bin/gmake -f Code/GraphMol/Fingerprints/CMakeFiles/fpGenTestCatch.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/fpGenTestCatch.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints 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-I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/fpGenTestCatch.dir/fpgen_catch_tests.cpp.o -MF CMakeFiles/fpGenTestCatch.dir/fpgen_catch_tests.cpp.o.d -o CMakeFiles/fpGenTestCatch.dir/fpgen_catch_tests.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/fpgen_catch_tests.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/fpgen_catch_tests.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 73%] Built target testFingerprintGenerators /usr/bin/gmake -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms 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-I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/test1.cpp.o -MF CMakeFiles/testMolTransforms.dir/test1.cpp.o.d -o CMakeFiles/testMolTransforms.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms/test1.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms/test1.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 73%] Linking CXX executable fpGenTestCatch cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/fpGenTestCatch.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/fpGenTestCatch.dir/fpgen_catch_tests.cpp.o -o fpGenTestCatch ../../RDGeneral/librdkitCatch.so ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 73%] Built target fpGenTestCatch /usr/bin/gmake -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/MMFF /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/MMFF /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f 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/usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o -MF CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o.d -o CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/MMFF/testMMFFHelpers.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/MMFF/testMMFFHelpers.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 73%] Linking CXX executable testMolTransforms cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolTransforms.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testMolTransforms.dir/test1.cpp.o -o testMolTransforms ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 73%] Built target testMolTransforms /usr/bin/gmake -f 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-g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpersMultiThread.dir/testMultiThread.cpp.o -MF CMakeFiles/testMMFFForceFieldHelpersMultiThread.dir/testMultiThread.cpp.o.d -o CMakeFiles/testMMFFForceFieldHelpersMultiThread.dir/testMultiThread.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/MMFF/testMultiThread.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/MMFF/testMultiThread.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 73%] Linking CXX executable testMMFFForceFieldHelpersMultiThread cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/MMFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMFFForceFieldHelpersMultiThread.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testMMFFForceFieldHelpersMultiThread.dir/testMultiThread.cpp.o -o testMMFFForceFieldHelpersMultiThread ../../../../lib/libRDKitDistGeomHelpers.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../../lib/libRDKitDistGeometry.so.1.2023.03.2 ../../../../lib/libRDKitForceFieldHelpers.so.1.2023.03.2 ../../../../lib/libRDKitForceField.so.1.2023.03.2 ../../../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../../lib/libRDKitAlignment.so.1.2023.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 73%] Built target testMMFFForceFieldHelpersMultiThread /usr/bin/gmake -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/UFF /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/UFF /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 73%] Building CXX object Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/UFF && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD 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CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o.d -o CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/UFF/testUFFHelpers.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/UFF/testUFFHelpers.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 74%] Linking CXX executable testMMFFForceFieldHelpers cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/MMFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMFFForceFieldHelpers.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection 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/builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/CrystalFF && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection 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Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 75%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/DistGeomHelpers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 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cmake_link_script CMakeFiles/testUFFForceFieldHelpers.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o -o testUFFForceFieldHelpers ../../../../lib/libRDKitDistGeomHelpers.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../../lib/libRDKitDistGeometry.so.1.2023.03.2 ../../../../lib/libRDKitForceFieldHelpers.so.1.2023.03.2 ../../../../lib/libRDKitForceField.so.1.2023.03.2 ../../../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../../lib/libRDKitAlignment.so.1.2023.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 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distGeomHelpersCatch cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/distGeomHelpersCatch.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/distGeomHelpersCatch.dir/catch_tests.cpp.o -o distGeomHelpersCatch ../../RDGeneral/librdkitCatch.so ../../../lib/libRDKitDistGeomHelpers.so.1.2023.03.2 ../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitDistGeometry.so.1.2023.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2023.03.2 ../../../lib/libRDKitForceField.so.1.2023.03.2 ../../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so [ 75%] Linking CXX executable testDistGeomHelpers cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDistGeomHelpers.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld 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../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 75%] Built target distGeomHelpersCatch /usr/bin/gmake -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/DistGeomHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 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CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o.d -o CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 75%] Built target testDistGeomHelpers /usr/bin/gmake -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign 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-I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o -MF CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o.d -o CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o -c 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-specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o -o testMolAlign ../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitDistGeomHelpers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 ../../../lib/libRDKitDistGeometry.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitForceField.so.1.2023.03.2 ../../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 75%] Linking CXX shared module ../../../../rdkit/Chem/rdDistGeom.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/DistGeomHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdDistGeom.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/rdDistGeom.so CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o ../../../../lib/libRDKitDistGeomHelpers.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitDistGeometry.so.1.2023.03.2 ../../../../lib/libRDKitForceFieldHelpers.so.1.2023.03.2 ../../../../lib/libRDKitForceField.so.1.2023.03.2 ../../../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../../lib/libRDKitAlignment.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 75%] Built target testMolAlign /usr/bin/gmake -f Code/GraphMol/MolAlign/CMakeFiles/testO3AAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testO3AAlign.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign/CMakeFiles/testO3AAlign.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f 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/usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/MolAlign/CMakeFiles/testO3AAlign.dir/testO3AAlign.cpp.o -MF CMakeFiles/testO3AAlign.dir/testO3AAlign.cpp.o.d -o CMakeFiles/testO3AAlign.dir/testO3AAlign.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign/testO3AAlign.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign/testO3AAlign.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 75%] Built target rdDistGeom /usr/bin/gmake -f Code/GraphMol/MolAlign/CMakeFiles/molAlignCatchTest.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/molAlignCatchTest.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign/CMakeFiles/molAlignCatchTest.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/MolAlign/CMakeFiles/molAlignCatchTest.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/molAlignCatchTest.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 75%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/molAlignCatchTest.dir/catch_tests.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/MolAlign/CMakeFiles/molAlignCatchTest.dir/catch_tests.cpp.o -MF CMakeFiles/molAlignCatchTest.dir/catch_tests.cpp.o.d -o CMakeFiles/molAlignCatchTest.dir/catch_tests.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign/catch_tests.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign/catch_tests.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 75%] Linking CXX executable molAlignCatchTest cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/molAlignCatchTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/molAlignCatchTest.dir/catch_tests.cpp.o -o molAlignCatchTest ../../RDGeneral/librdkitCatch.so ../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so [ 75%] Linking CXX executable testO3AAlign cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/testO3AAlign.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe 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../../../lib/libRDKitDepictor.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 ../../../lib/libRDKitDistGeometry.so.1.2023.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitForceField.so.1.2023.03.2 ../../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 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../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so [ 75%] Linking CXX shared module ../../../../rdkit/Chem/rdMolAlign.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolAlign.dir/link.txt --verbose=1 /usr/bin/g++ 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../../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../../lib/libRDKitAlignment.so.1.2023.03.2 ../../../../lib/libRDKitForceFieldHelpers.so.1.2023.03.2 ../../../../lib/libRDKitForceField.so.1.2023.03.2 ../../../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 75%] Built target testFeatures /usr/bin/gmake -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2023_03_2 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Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFMCS_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o -MF CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o.d -o CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/MaximumCommonSubgraph.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/MaximumCommonSubgraph.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 75%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/freetype2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o -MF CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o.d -o CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/MolDraw2DUtils.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/MolDraw2DUtils.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 75%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFMCS_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o -MF CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o.d -o CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/SubstructMatchCustom.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/SubstructMatchCustom.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 75%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/AtomSymbol.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/freetype2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/AtomSymbol.cpp.o -MF CMakeFiles/MolDraw2D.dir/AtomSymbol.cpp.o.d -o CMakeFiles/MolDraw2D.dir/AtomSymbol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/AtomSymbol.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/AtomSymbol.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 75%] Linking CXX shared library ../../../lib/libRDKitFMCS.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_link_script CMakeFiles/FMCS.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitFMCS.so.1 -o ../../../lib/libRDKitFMCS.so.1.2023.03.2 CMakeFiles/FMCS.dir/FMCS.cpp.o CMakeFiles/FMCS.dir/Seed.cpp.o CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so In member function 'construct', inlined from 'construct' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from '_M_create_node' at /usr/include/c++/13/bits/stl_list.h:713:33, inlined from '_M_insert' at /usr/include/c++/13/bits/stl_list.h:2005:32, inlined from 'push_back' at /usr/include/c++/13/bits/stl_list.h:1306:24, inlined from 'push_dispatch' at /usr/include/boost/pending/container_traits.hpp:574:20, inlined from 'push' at /usr/include/boost/pending/container_traits.hpp:606:29, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:1073:29, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:2258:20, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:2266:20, inlined from 'addBond' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Graph.h:38:45, inlined from 'addBond' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Seed.cpp:46:19: /usr/include/c++/13/bits/new_allocator.h:187:11: warning: 'p' may be used uninitialized [-Wmaybe-uninitialized] 187 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^ /usr/include/boost/graph/detail/adjacency_list.hpp: In member function 'addBond': /usr/include/boost/graph/detail/adjacency_list.hpp:2265:41: note: 'p' was declared here 2265 | typename Config::edge_property_type p; | ^ In member function 'construct', inlined from 'construct' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from '_M_create_node' at /usr/include/c++/13/bits/stl_list.h:713:33, inlined from '_M_insert' at /usr/include/c++/13/bits/stl_list.h:2005:32, inlined from 'push_back' at /usr/include/c++/13/bits/stl_list.h:1306:24, inlined from 'push_dispatch' at /usr/include/boost/pending/container_traits.hpp:574:20, inlined from 'push' at /usr/include/boost/pending/container_traits.hpp:606:29, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:1073:29, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:2258:20, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:2266:20, inlined from 'copy_impl' at /usr/include/boost/graph/detail/adjacency_list.hpp:2193:27: /usr/include/c++/13/bits/new_allocator.h:187:11: warning: 'p' may be used uninitialized [-Wmaybe-uninitialized] 187 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^ /usr/include/boost/graph/detail/adjacency_list.hpp: In member function 'copy_impl': /usr/include/boost/graph/detail/adjacency_list.hpp:2265:41: note: 'p' was declared here 2265 | typename Config::edge_property_type p; | ^ In member function 'construct', inlined from 'construct' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from '_M_create_node' at /usr/include/c++/13/bits/stl_list.h:713:33, inlined from '_M_insert' at /usr/include/c++/13/bits/stl_list.h:2005:32, inlined from 'push_back' at /usr/include/c++/13/bits/stl_list.h:1306:24, inlined from 'push_dispatch' at /usr/include/boost/pending/container_traits.hpp:574:20, inlined from 'push' at /usr/include/boost/pending/container_traits.hpp:606:29, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:1073:29, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:2258:20, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:2266:20, inlined from 'addBond' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Graph.h:38:45, inlined from 'init' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/MaximumCommonSubgraph.cpp:227:34: /usr/include/c++/13/bits/new_allocator.h:187:11: warning: 'p' may be used uninitialized [-Wmaybe-uninitialized] 187 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^ /usr/include/boost/graph/detail/adjacency_list.hpp: In member function 'init': /usr/include/boost/graph/detail/adjacency_list.hpp:2265:41: note: 'p' was declared here 2265 | typename Config::edge_property_type p; | ^ [ 76%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawAnnotation.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/freetype2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawAnnotation.cpp.o -MF CMakeFiles/MolDraw2D.dir/DrawAnnotation.cpp.o.d -o CMakeFiles/MolDraw2D.dir/DrawAnnotation.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/DrawAnnotation.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/DrawAnnotation.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined In member function 'construct', inlined from 'construct' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from '_M_create_node' at /usr/include/c++/13/bits/stl_list.h:713:33, inlined from '_M_insert' at /usr/include/c++/13/bits/stl_list.h:2005:32, inlined from 'push_back' at /usr/include/c++/13/bits/stl_list.h:1306:24, inlined from 'push_dispatch' at /usr/include/boost/pending/container_traits.hpp:574:20, inlined from 'push' at /usr/include/boost/pending/container_traits.hpp:606:29, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:1073:29, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:2258:20, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:2266:20, inlined from 'addBond' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Graph.h:38:45, inlined from 'makeRingGraph.isra' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/RingMatchTableSet.h:231:16: /usr/include/c++/13/bits/new_allocator.h:187:11: warning: 'p' may be used uninitialized [-Wmaybe-uninitialized] 187 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^ /usr/include/boost/graph/detail/adjacency_list.hpp: In function 'makeRingGraph.isra': /usr/include/boost/graph/detail/adjacency_list.hpp:2265:41: note: 'p' was declared here 2265 | typename Config::edge_property_type p; | ^ cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFMCS.so.1.2023.03.2 ../../../lib/libRDKitFMCS.so.1 ../../../lib/libRDKitFMCS.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 76%] Built target FMCS /usr/bin/gmake -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 76%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/hashfunctions.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolHash && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolHash_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLHASH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/hashfunctions.cpp.o -MF CMakeFiles/MolHash.dir/hashfunctions.cpp.o.d -o CMakeFiles/MolHash.dir/hashfunctions.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolHash/hashfunctions.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolHash/hashfunctions.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 76%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawMol.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/freetype2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawMol.cpp.o -MF CMakeFiles/MolDraw2D.dir/DrawMol.cpp.o.d -o CMakeFiles/MolDraw2D.dir/DrawMol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/DrawMol.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/DrawMol.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 76%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/normalize.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolHash && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolHash_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLHASH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/normalize.cpp.o -MF CMakeFiles/MolHash.dir/normalize.cpp.o.d -o CMakeFiles/MolHash.dir/normalize.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolHash/normalize.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolHash/normalize.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 76%] Linking CXX shared library ../../../lib/libRDKitMolHash.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolHash.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitMolHash.so.1 -o ../../../lib/libRDKitMolHash.so.1.2023.03.2 CMakeFiles/MolHash.dir/hashfunctions.cpp.o CMakeFiles/MolHash.dir/normalize.cpp.o ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolHash.so.1.2023.03.2 ../../../lib/libRDKitMolHash.so.1 ../../../lib/libRDKitMolHash.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 76%] Built target MolHash /usr/bin/gmake -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 77%] Building CXX object Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/MMPA.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MMPA && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMMPA_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MMPA_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/MMPA.cpp.o -MF CMakeFiles/MMPA.dir/MMPA.cpp.o.d -o CMakeFiles/MMPA.dir/MMPA.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MMPA/MMPA.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MMPA/MMPA.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 77%] Linking CXX shared library ../../../lib/libRDKitMMPA.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMPA.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitMMPA.so.1 -o ../../../lib/libRDKitMMPA.so.1.2023.03.2 CMakeFiles/MMPA.dir/MMPA.cpp.o ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so [ 77%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawMolMCH.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/freetype2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawMolMCH.cpp.o -MF CMakeFiles/MolDraw2D.dir/DrawMolMCH.cpp.o.d -o CMakeFiles/MolDraw2D.dir/DrawMolMCH.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/DrawMolMCH.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/DrawMolMCH.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMMPA.so.1.2023.03.2 ../../../lib/libRDKitMMPA.so.1 ../../../lib/libRDKitMMPA.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 77%] Built target MMPA /usr/bin/gmake -f Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/build.make Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/build.make Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 77%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/catch_tests.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 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defined [ 77%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawShape.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/freetype2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects 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Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextFTCairo.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/freetype2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g 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/builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule4a.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule4a.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 80%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule4b.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule4b.cpp.o -MF CMakeFiles/testCIPLabeler.dir/rules/Rule4b.cpp.o.d -o CMakeFiles/testCIPLabeler.dir/rules/Rule4b.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule4b.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule4b.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 80%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule4c.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong 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-DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule5New.cpp.o -MF CMakeFiles/testCIPLabeler.dir/rules/Rule5New.cpp.o.d -o CMakeFiles/testCIPLabeler.dir/rules/Rule5New.cpp.o -c 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Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/SequenceRule.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong 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-fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testCIPLabeler.dir/catch_tests.cpp.o CMakeFiles/testCIPLabeler.dir/CIPMol.cpp.o CMakeFiles/testCIPLabeler.dir/CIPLabeler.cpp.o CMakeFiles/testCIPLabeler.dir/Mancude.cpp.o CMakeFiles/testCIPLabeler.dir/Digraph.cpp.o CMakeFiles/testCIPLabeler.dir/Node.cpp.o CMakeFiles/testCIPLabeler.dir/Edge.cpp.o CMakeFiles/testCIPLabeler.dir/Sort.cpp.o CMakeFiles/testCIPLabeler.dir/configs/Configuration.cpp.o CMakeFiles/testCIPLabeler.dir/configs/Sp2Bond.cpp.o CMakeFiles/testCIPLabeler.dir/configs/Tetrahedral.cpp.o CMakeFiles/testCIPLabeler.dir/rules/Rule1a.cpp.o CMakeFiles/testCIPLabeler.dir/rules/Rule1b.cpp.o CMakeFiles/testCIPLabeler.dir/rules/Rule2.cpp.o CMakeFiles/testCIPLabeler.dir/rules/Rule3.cpp.o CMakeFiles/testCIPLabeler.dir/rules/Rule4a.cpp.o CMakeFiles/testCIPLabeler.dir/rules/Rule4b.cpp.o CMakeFiles/testCIPLabeler.dir/rules/Rule4c.cpp.o CMakeFiles/testCIPLabeler.dir/rules/Rule5.cpp.o CMakeFiles/testCIPLabeler.dir/rules/Rule5New.cpp.o CMakeFiles/testCIPLabeler.dir/rules/Rule6.cpp.o CMakeFiles/testCIPLabeler.dir/rules/SequenceRule.cpp.o -o testCIPLabeler ../../RDGeneral/librdkitCatch.so ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolDraw2D.so.1.2023.03.2 ../../../lib/libRDKitMolDraw2D.so.1 ../../../lib/libRDKitMolDraw2D.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 80%] Built target MolDraw2D /usr/bin/gmake -f Code/GraphMol/Deprotect/CMakeFiles/Deprotect.dir/build.make 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'/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 80%] Building CXX object Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Trajectory && /usr/bin/g++ 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/usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitForceField.so.1.2023.03.2 ../../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Deprotect && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDeprotect.so.1.2023.03.2 ../../../lib/libRDKitDeprotect.so.1 ../../../lib/libRDKitDeprotect.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 81%] Built target Deprotect 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defined [ 83%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupCore.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/RGroupDecomposition && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRGroupDecomposition_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall 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CMakeFiles/RGroupDecomposition.dir/RGroupDecompParams.cpp.o.d -o CMakeFiles/RGroupDecomposition.dir/RGroupDecompParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/RGroupDecomposition/RGroupDecompParams.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/RGroupDecomposition/RGroupDecompParams.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined In member function '__ct ', inlined from 'dereference' at /usr/include/boost/python/stl_iterator.hpp:48:61, inlined from 'dereference' at /usr/include/boost/iterator/iterator_facade.hpp:550:32, inlined from 'operator*' at /usr/include/boost/iterator/iterator_facade.hpp:656:69, inlined from '_M_range_initialize' at /usr/include/c++/13/bits/stl_vector.h:1670:20, inlined from '__ct ' at /usr/include/c++/13/bits/stl_vector.h:708:23, inlined from 'pythonObjectToVect' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDBoost/Wrap.h:140:15, inlined from 'molzipHelper' at 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Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o -MF CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o.d -o CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/ForwardSDMolSupplier.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/ForwardSDMolSupplier.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 83%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MaeMolSupplier.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION 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-isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o -MF CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o.d -o CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/SmilesMolSupplier.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/SmilesMolSupplier.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 84%] Linking CXX shared library ../../../lib/libRDKitMolEnumerator.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolEnumerator && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolEnumerator.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitMolEnumerator.so.1 -o ../../../lib/libRDKitMolEnumerator.so.1.2023.03.2 CMakeFiles/MolEnumerator.dir/MolEnumerator.cpp.o CMakeFiles/MolEnumerator.dir/PositionVariation.cpp.o CMakeFiles/MolEnumerator.dir/LinkNode.cpp.o CMakeFiles/MolEnumerator.dir/RepeatUnit.cpp.o ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.78.0 [ 85%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o -MF CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o.d -o CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/SmilesWriter.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/SmilesWriter.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolEnumerator && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolEnumerator.so.1.2023.03.2 ../../../lib/libRDKitMolEnumerator.so.1 ../../../lib/libRDKitMolEnumerator.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 85%] Built target MolEnumerator /usr/bin/gmake -f Code/GraphMol/Abbreviations/CMakeFiles/testAbbreviations.dir/build.make Code/GraphMol/Abbreviations/CMakeFiles/testAbbreviations.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Abbreviations /builddir/build/BUILD/rdkit-Release_2023_03_2 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Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build.make Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build.make Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 85%] Building CXX object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/adapter.cpp.o cd 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-mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o -MF CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o.d -o CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/TDTWriter.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/TDTWriter.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/adapter.cpp: In function 'const char* makeMolJSON(CROMol)': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/adapter.cpp:433:43: warning: unused parameter 'data' [-Wunused-parameter] 433 | extern "C" const char *makeMolJSON(CROMol data) { | ~~~~~~~^~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/adapter.cpp: In function 'void* parseMolJSON(char*, bool)': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/adapter.cpp:450:38: warning: unused parameter 'data' [-Wunused-parameter] 450 | extern "C" CROMol parseMolJSON(char *data, bool warnOnFail) { | ~~~~~~^~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/adapter.cpp:450:49: warning: unused parameter 'warnOnFail' [-Wunused-parameter] 450 | extern "C" CROMol parseMolJSON(char *data, bool warnOnFail) { | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/adapter.cpp: In function 'void* makeAvalonBFP(CROMol, bool, unsigned int)': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/adapter.cpp:1584:38: warning: unused parameter 'data' [-Wunused-parameter] 1584 | extern "C" CBfp makeAvalonBFP(CROMol data, bool isQuery, | ~~~~~~~^~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/adapter.cpp:1584:49: warning: unused parameter 'isQuery' [-Wunused-parameter] 1584 | extern "C" CBfp makeAvalonBFP(CROMol data, bool isQuery, | ~~~~~^~~~~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/adapter.cpp:1585:44: warning: unused parameter 'bitFlags' [-Wunused-parameter] 1585 | unsigned int bitFlags) { | ~~~~~~~~~~~~~^~~~~~~~ [ 85%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_op.c.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit && /usr/bin/gcc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2023.03.2\" -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/usr/include/pgsql/server -I/usr/include/python3.11 -I/usr/include/freetype2 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_op.c.o -MF CMakeFiles/rdkit.dir/bfp_op.c.o.d -o CMakeFiles/rdkit.dir/bfp_op.c.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/bfp_op.c [ 85%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/cache.c.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit && /usr/bin/gcc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2023.03.2\" -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/usr/include/pgsql/server -I/usr/include/python3.11 -I/usr/include/freetype2 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/cache.c.o -MF CMakeFiles/rdkit.dir/cache.c.o.d -o CMakeFiles/rdkit.dir/cache.c.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/cache.c [ 85%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/guc.c.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit && /usr/bin/gcc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB 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-DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/usr/include/pgsql/server -I/usr/include/python3.11 -I/usr/include/freetype2 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/low_gist.c.o -MF CMakeFiles/rdkit.dir/low_gist.c.o.d -o CMakeFiles/rdkit.dir/low_gist.c.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/low_gist.c [ 85%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g 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-DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2023.03.2\" -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/usr/include/pgsql/server -I/usr/include/python3.11 -I/usr/include/freetype2 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/mol_op.c.o -MF CMakeFiles/rdkit.dir/mol_op.c.o.d -o CMakeFiles/rdkit.dir/mol_op.c.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/mol_op.c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/mol_op.c: In function 'mol_nm_hash': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/mol_op.c:358:7: warning: unused variable 'len' [-Wunused-variable] 358 | int len; | ^~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_smiles_transition': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/mol_op.c:455:1: warning: control reaches end of non-void function [-Wreturn-type] 455 | } | ^ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_mol_transition': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/mol_op.c:590:1: warning: control reaches end of non-void function [-Wreturn-type] 590 | } | ^ [ 85%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rdkit_gist.c.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit && /usr/bin/gcc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2023.03.2\" -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/usr/include/pgsql/server -I/usr/include/python3.11 -I/usr/include/freetype2 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rdkit_gist.c.o -MF CMakeFiles/rdkit.dir/rdkit_gist.c.o.d -o CMakeFiles/rdkit.dir/rdkit_gist.c.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/rdkit_gist.c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/rdkit_gist.c: In function 'soergeldist': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/rdkit_gist.c:237:10: warning: unused variable 'd' [-Wunused-variable] 237 | double d; | ^ [ 86%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_gist.c.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit && /usr/bin/gcc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2023.03.2\" -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/usr/include/pgsql/server -I/usr/include/python3.11 -I/usr/include/freetype2 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_gist.c.o -MF CMakeFiles/rdkit.dir/bfp_gist.c.o.d -o CMakeFiles/rdkit.dir/bfp_gist.c.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/bfp_gist.c [ 86%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_gin.c.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit && /usr/bin/gcc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2023.03.2\" -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/usr/include/pgsql/server -I/usr/include/python3.11 -I/usr/include/freetype2 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_gin.c.o -MF CMakeFiles/rdkit.dir/bfp_gin.c.o.d -o CMakeFiles/rdkit.dir/bfp_gin.c.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/bfp_gin.c [ 86%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bitstring.c.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit && /usr/bin/gcc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2023.03.2\" -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/usr/include/pgsql/server -I/usr/include/python3.11 -I/usr/include/freetype2 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bitstring.c.o -MF CMakeFiles/rdkit.dir/bitstring.c.o.d -o CMakeFiles/rdkit.dir/bitstring.c.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/bitstring.c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/bitstring.c: In function 'bitstringUnion': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/bitstring.c:64:7: warning: unused variable 'i' [-Wunused-variable] 64 | int i; | ^ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/bitstring.c: In function 'bitstringIntersection': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/bitstring.c:96:7: warning: unused variable 'i' [-Wunused-variable] 96 | int i; | ^ [ 86%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rdkit_io.c.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit && /usr/bin/gcc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2023.03.2\" -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/usr/include/pgsql/server -I/usr/include/python3.11 -I/usr/include/freetype2 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rdkit_io.c.o -MF CMakeFiles/rdkit.dir/rdkit_io.c.o.d -o CMakeFiles/rdkit.dir/rdkit_io.c.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/rdkit_io.c [ 86%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rxn_op.c.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit && /usr/bin/gcc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2023.03.2\" -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/usr/include/pgsql/server -I/usr/include/python3.11 -I/usr/include/freetype2 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rxn_op.c.o -MF CMakeFiles/rdkit.dir/rxn_op.c.o.d -o CMakeFiles/rdkit.dir/rxn_op.c.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/rxn_op.c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/rxn_op.c:134:3: warning: multi-line comment [-Wcomment] 134 | // /* keep compiler quiet - no extra ; */ \ | ^ [ 86%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/sfp_op.c.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit && /usr/bin/gcc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2023.03.2\" -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/usr/include/pgsql/server -I/usr/include/python3.11 -I/usr/include/freetype2 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/sfp_op.c.o -MF CMakeFiles/rdkit.dir/sfp_op.c.o.d -o CMakeFiles/rdkit.dir/sfp_op.c.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/sfp_op.c [ 86%] Linking CXX shared library librdkit.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/sql /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/sql cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/data /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/data cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/expected /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/expected cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdkit.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,librdkit.so -o librdkit.so CMakeFiles/rdkit.dir/adapter.cpp.o CMakeFiles/rdkit.dir/bfp_op.c.o CMakeFiles/rdkit.dir/cache.c.o CMakeFiles/rdkit.dir/guc.c.o CMakeFiles/rdkit.dir/low_gist.c.o CMakeFiles/rdkit.dir/mol_op.c.o CMakeFiles/rdkit.dir/rdkit_gist.c.o CMakeFiles/rdkit.dir/bfp_gist.c.o CMakeFiles/rdkit.dir/bfp_gin.c.o CMakeFiles/rdkit.dir/bitstring.c.o CMakeFiles/rdkit.dir/rdkit_io.c.o CMakeFiles/rdkit.dir/rxn_op.c.o CMakeFiles/rdkit.dir/sfp_op.c.o -L/builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/lib64 /usr/lib64/libpq.so ../../../lib/libRDKitRDInchiLib.so.1.2023.03.2 /usr/lib64/libinchi.so ../../../lib/libRDKitMolDraw2D.so.1.2023.03.2 ../../../lib/libRDKitMolHash.so.1.2023.03.2 ../../../lib/libRDKitFMCS.so.1.2023.03.2 ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 /usr/lib64/libcairo.so /usr/lib64/libfreetype.so ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 86%] Built target rdkit /usr/bin/gmake -f External/INCHI-API/CMakeFiles/testInchi.dir/build.make External/INCHI-API/CMakeFiles/testInchi.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2023_03_2/External/INCHI-API/CMakeFiles/testInchi.dir/DependInfo.cmake --color= gmake[2]: Leaving 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-isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/testReaction.cpp.o -MF CMakeFiles/testReaction.dir/testReaction.cpp.o.d -o CMakeFiles/testReaction.dir/testReaction.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/testReaction.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/testReaction.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory 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CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o -o testReactionFingerprints ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.78.0 gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 87%] Built target testReactionFingerprints /usr/bin/gmake -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 87%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o -MF CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o.d -o CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/Enumerate/testEnumerate.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/Enumerate/testEnumerate.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 87%] Linking CXX executable testEnumeration cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testEnumeration.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o -o testEnumeration ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.78.0 gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 87%] Built target testEnumeration /usr/bin/gmake -f Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 87%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/catch_tests.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/catch_tests.cpp.o -MF CMakeFiles/rxnTestCatch.dir/catch_tests.cpp.o.d -o CMakeFiles/rxnTestCatch.dir/catch_tests.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/catch_tests.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/catch_tests.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 87%] Linking CXX executable rxnTestCatch cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/rxnTestCatch.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/rxnTestCatch.dir/catch_tests.cpp.o -o rxnTestCatch ../../RDGeneral/librdkitCatch.so ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.78.0 [ 87%] Linking CXX executable testReaction cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReaction.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testReaction.dir/testReaction.cpp.o -o testReaction ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.78.0 gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 87%] Built target rxnTestCatch /usr/bin/gmake -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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-fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o -MF CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o.d -o CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/MolStandardize.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/MolStandardize.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 87%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Metal.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Metal.cpp.o -MF CMakeFiles/MolStandardize.dir/Metal.cpp.o.d -o CMakeFiles/MolStandardize.dir/Metal.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Metal.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Metal.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined In file included from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/smart_ptr.hpp:19, from /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Vector.h:23, from /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/point.h:24, from /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolPickler.h:14, from /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp:34: In member function 'boost::shared_ptr::shared_ptr(boost::shared_ptr const&)', inlined from 'RDKit::RunReactant(RDKit::ChemicalReaction*, boost::python::api::object, unsigned int)_object*' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp:129:14: /usr/include/boost/smart_ptr/shared_ptr.hpp:458:66: warning: 'MEM[(const struct shared_ptr &)&D.533494 + 24].px' may be used uninitialized [-Wmaybe-uninitialized] 458 | shared_ptr( shared_ptr const & r ) BOOST_SP_NOEXCEPT : px( r.px ), pn( r.pn ) | ~~^~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp: In function 'RDKit::RunReactant(RDKit::ChemicalReaction*, boost::python::api::object, unsigned int)_object*': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp:129:30: note: '' declared here 129 | ROMOL_SPTR react = python::extract(reactant); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/shared_ptr.hpp:17: In member function 'boost::detail::shared_count::shared_count(boost::detail::shared_count const&)', inlined from 'boost::shared_ptr::shared_ptr(boost::shared_ptr const&)' at /usr/include/boost/smart_ptr/shared_ptr.hpp:458:72, inlined from 'RDKit::RunReactant(RDKit::ChemicalReaction*, boost::python::api::object, unsigned int)_object*' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp:129:14: /usr/include/boost/smart_ptr/detail/shared_count.hpp:438:67: warning: 'MEM[(const struct shared_count &)&D.533494 + 32].pi_' may be used uninitialized [-Wmaybe-uninitialized] 438 | shared_count(shared_count const & r) BOOST_SP_NOEXCEPT: pi_(r.pi_) | ~~^~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp: In function 'RDKit::RunReactant(RDKit::ChemicalReaction*, boost::python::api::object, unsigned int)_object*': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp:129:30: note: '' declared here 129 | ROMOL_SPTR react = python::extract(reactant); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 88%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Normalize.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Normalize.cpp.o -MF CMakeFiles/MolStandardize.dir/Normalize.cpp.o.d -o CMakeFiles/MolStandardize.dir/Normalize.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Normalize.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Normalize.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 88%] Linking CXX shared module ../../../../rdkit/Chem/rdChemReactions.so cd 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-I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Charge.cpp.o -MF CMakeFiles/MolStandardize.dir/Charge.cpp.o.d -o CMakeFiles/MolStandardize.dir/Charge.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Charge.cpp annobin: 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/builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong 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'/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 88%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/test1.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D && /usr/bin/g++ 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../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libcairo.so /usr/lib64/libfreetype.so [ 88%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogUtils.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK 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-DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogUtils.cpp.o -MF CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogUtils.cpp.o.d -o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogUtils.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogUtils.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 90%] Linking CXX executable moldraw2DTestCatch cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldraw2DTestCatch.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/moldraw2DTestCatch.dir/catch_tests.cpp.o -o moldraw2DTestCatch ../../RDGeneral/librdkitCatch.so ../../../lib/libRDKitMolDraw2D.so.1.2023.03.2 ../../../lib/libRDKitCIPLabeler.so.1.2023.03.2 ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 /usr/lib64/libcairo.so /usr/lib64/libfreetype.so ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 91%] Linking CXX shared library ../../../lib/libRDKitMolStandardize.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolStandardize.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitMolStandardize.so.1 -o ../../../lib/libRDKitMolStandardize.so.1.2023.03.2 CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o CMakeFiles/MolStandardize.dir/Metal.cpp.o CMakeFiles/MolStandardize.dir/Normalize.cpp.o CMakeFiles/MolStandardize.dir/Validate.cpp.o CMakeFiles/MolStandardize.dir/Charge.cpp.o CMakeFiles/MolStandardize.dir/Tautomer.cpp.o CMakeFiles/MolStandardize.dir/Fragment.cpp.o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogEntry.cpp.o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogParams.cpp.o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogUtils.cpp.o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogEntry.cpp.o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogParams.cpp.o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogUtils.cpp.o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogEntry.cpp.o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogParams.cpp.o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogUtils.cpp.o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogEntry.cpp.o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogParams.cpp.o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogUtils.cpp.o ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so /usr/lib64/libboost_serialization.so.1.78.0 cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolStandardize.so.1.2023.03.2 ../../../lib/libRDKitMolStandardize.so.1 ../../../lib/libRDKitMolStandardize.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 91%] Built target MolStandardize /usr/bin/gmake -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 91%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/freetype2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o -MF CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o.d -o CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/rxn_test1.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/rxn_test1.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 91%] Built target moldraw2DTestCatch /usr/bin/gmake -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 91%] Building CXX object Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/Wrap && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolDraw2D_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/freetype2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o -MF CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o.d -o CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/Wrap/rdMolDraw2D.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/Wrap/rdMolDraw2D.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 91%] Linking CXX executable moldraw2DRxnTest1 cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldraw2DRxnTest1.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o -o moldraw2DRxnTest1 ../../../lib/libRDKitMolDraw2D.so.1.2023.03.2 ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libcairo.so /usr/lib64/libfreetype.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 91%] Built target moldraw2DRxnTest1 /usr/bin/gmake -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 92%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o -MF CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o.d -o CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/testFMCS_Unit.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/testFMCS_Unit.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 92%] Linking CXX executable testFMCS cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFMCS.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o -o testFMCS ../../../lib/libRDKitFMCS.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.78.0 gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 92%] Built target testFMCS /usr/bin/gmake -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 92%] Building CXX object Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Wrap && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdFMCS_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o -MF CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o.d -o CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Wrap/rdFMCS.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Wrap/rdFMCS.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 92%] Linking CXX shared module ../../../../rdkit/Chem/Draw/rdMolDraw2D.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolDraw2D.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/Draw/rdMolDraw2D.so CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o ../../../../lib/libRDKitMolDraw2D.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 /usr/lib64/libcairo.so /usr/lib64/libfreetype.so /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 92%] Linking CXX shared module ../../../../rdkit/Chem/rdFMCS.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdFMCS.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/rdFMCS.so CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o ../../../../lib/libRDKitFMCS.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl In member function '__ct ', inlined from 'dereference' at /usr/include/boost/python/stl_iterator.hpp:48:61, inlined from 'dereference' at /usr/include/boost/iterator/iterator_facade.hpp:550:32, inlined from 'operator*' at /usr/include/boost/iterator/iterator_facade.hpp:656:69, inlined from '_M_range_initialize' at /usr/include/c++/13/bits/stl_vector.h:1670:20, inlined from '__ct ' at /usr/include/c++/13/bits/stl_vector.h:708:23, inlined from 'pythonObjectToVect' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDBoost/Wrap.h:140:15: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/point.h:283:57: warning: 'MEM[(const struct Point2D &)&D.24885 + 24].x' may be used uninitialized [-Wmaybe-uninitialized] 283 | Point2D(const Point2D &other) : Point(other), x(other.x), y(other.y) {} | ^ /usr/include/boost/python/stl_iterator.hpp: In function 'pythonObjectToVect': /usr/include/boost/python/stl_iterator.hpp:48:16: note: '' declared here 48 | return extract(this->impl_.current().get())(); | ^ In member function '__ct ', inlined from 'dereference' at /usr/include/boost/python/stl_iterator.hpp:48:61, inlined from 'dereference' at /usr/include/boost/iterator/iterator_facade.hpp:550:32, inlined from 'operator*' at /usr/include/boost/iterator/iterator_facade.hpp:656:69, inlined from '_M_range_initialize' at /usr/include/c++/13/bits/stl_vector.h:1670:20, inlined from '__ct ' at /usr/include/c++/13/bits/stl_vector.h:708:23, inlined from 'pythonObjectToVect' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDBoost/Wrap.h:140:15: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/point.h:283:69: warning: 'MEM[(const struct Point2D &)&D.24885 + 24].y' may be used uninitialized [-Wmaybe-uninitialized] 283 | Point2D(const Point2D &other) : Point(other), x(other.x), y(other.y) {} | ^ /usr/include/boost/python/stl_iterator.hpp: In function 'pythonObjectToVect': /usr/include/boost/python/stl_iterator.hpp:48:16: note: '' declared here 48 | return extract(this->impl_.current().get())(); | ^ gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 92%] Built target rdMolDraw2D /usr/bin/gmake -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Test /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Test /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 92%] Building CXX object Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/testFMCS.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Test && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/testFMCS.cpp.o -MF CMakeFiles/FMCStest.dir/testFMCS.cpp.o.d -o CMakeFiles/FMCStest.dir/testFMCS.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Test/testFMCS.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Test/testFMCS.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined In member function 'construct', inlined from 'construct' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from '_M_create_node' at /usr/include/c++/13/bits/stl_list.h:713:33, inlined from '_M_insert' at /usr/include/c++/13/bits/stl_list.h:2005:32, inlined from 'push_back' at /usr/include/c++/13/bits/stl_list.h:1306:24, inlined from 'push_dispatch' at /usr/include/boost/pending/container_traits.hpp:574:20, inlined from 'push' at /usr/include/boost/pending/container_traits.hpp:606:29, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:1073:29, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:2258:20, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:2266:20, inlined from 'addBond' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Graph.h:38:45, inlined from 'makeRingGraph.isra' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/RingMatchTableSet.h:231:16: /usr/include/c++/13/bits/new_allocator.h:187:11: warning: 'p' may be used uninitialized [-Wmaybe-uninitialized] 187 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^ /usr/include/boost/graph/detail/adjacency_list.hpp: In function 'makeRingGraph.isra': /usr/include/boost/graph/detail/adjacency_list.hpp:2265:41: note: 'p' was declared here 2265 | typename Config::edge_property_type p; | ^ gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 92%] Built target rdFMCS /usr/bin/gmake -f Code/GraphMol/MolHash/CMakeFiles/molHashCatchTest.dir/build.make Code/GraphMol/MolHash/CMakeFiles/molHashCatchTest.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolHash/CMakeFiles/molHashCatchTest.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/MolHash/CMakeFiles/molHashCatchTest.dir/build.make Code/GraphMol/MolHash/CMakeFiles/molHashCatchTest.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 92%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/molHashCatchTest.dir/catch_tests.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolHash && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION 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/builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_link_script CMakeFiles/molHashCatchTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/molHashCatchTest.dir/catch_tests.cpp.o -o molHashCatchTest ../../RDGeneral/librdkitCatch.so 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'/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 92%] Building CXX object Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MMPA/Wrap && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMMPA_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o -MF CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o.d -o CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MMPA/Wrap/rdMMPA.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MMPA/Wrap/rdMMPA.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 92%] Linking CXX executable testMMPA cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMPA.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g 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../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 92%] Built target testMMPA /usr/bin/gmake -f Code/GraphMol/Deprotect/CMakeFiles/deprotectTest.dir/build.make Code/GraphMol/Deprotect/CMakeFiles/deprotectTest.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Deprotect /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Deprotect /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Deprotect/CMakeFiles/deprotectTest.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/Deprotect/CMakeFiles/deprotectTest.dir/build.make Code/GraphMol/Deprotect/CMakeFiles/deprotectTest.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 92%] Building CXX object Code/GraphMol/Deprotect/CMakeFiles/deprotectTest.dir/deprotectTest.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Deprotect && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DEPROTECT_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/Deprotect/CMakeFiles/deprotectTest.dir/deprotectTest.cpp.o -MF CMakeFiles/deprotectTest.dir/deprotectTest.cpp.o.d -o CMakeFiles/deprotectTest.dir/deprotectTest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Deprotect/deprotectTest.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Deprotect/deprotectTest.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 93%] Linking CXX shared module ../../../../rdkit/Chem/rdMMPA.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MMPA/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMMPA.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables 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../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 93%] Built target rdMMPA /usr/bin/gmake -f Code/GraphMol/Deprotect/Wrap/CMakeFiles/rdDeprotect.dir/build.make Code/GraphMol/Deprotect/Wrap/CMakeFiles/rdDeprotect.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix 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../../../lib/libRDKitFileParsers.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.78.0 [ 93%] Building CXX object Code/GraphMol/Deprotect/Wrap/CMakeFiles/rdDeprotect.dir/DeprotectWrap.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Deprotect/Wrap && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK 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cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/RGroupDecomposition/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/RGroupDecomposition/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 93%] Building CXX object Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/RGroupDecomposition/Wrap && 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-ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/gaExample.dir/GaExample.cpp.o -o gaExample ../../../lib/libRDKitRGroupDecomposition.so.1.2023.03.2 /usr/lib64/libboost_program_options.so.1.78.0 ../../../lib/libRDKitFMCS.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl ../../../lib/libRDKitga.so.1.2023.03.2 gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 93%] Built target gaExample /usr/bin/gmake -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 93%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/test1.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/test1.cpp.o -MF CMakeFiles/molStandardizeTest.dir/test1.cpp.o.d -o CMakeFiles/molStandardizeTest.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/test1.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/test1.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 93%] Linking CXX shared module ../../../../rdkit/Chem/rdRGroupDecomposition.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/RGroupDecomposition/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdRGroupDecomposition.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/rdRGroupDecomposition.so CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o ../../../../lib/libRDKitRGroupDecomposition.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitFMCS.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../../lib/libRDKitga.so.1.2023.03.2 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl In member function '__ct ', inlined from 'dereference' at /usr/include/boost/python/stl_iterator.hpp:48:61, inlined from 'dereference' at /usr/include/boost/iterator/iterator_facade.hpp:550:32, inlined from 'operator*' at /usr/include/boost/iterator/iterator_facade.hpp:656:69, inlined from '__ct_base ' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/RGroupDecomposition/Wrap/rdRGroupComposition.cpp:73:28: /usr/include/boost/smart_ptr/shared_ptr.hpp:458:66: warning: 'MEM[(const struct shared_ptr &)&D.20344 + 24].px' may be used uninitialized [-Wmaybe-uninitialized] 458 | shared_ptr( shared_ptr const & r ) BOOST_SP_NOEXCEPT : px( r.px ), pn( r.pn ) | ^ /usr/include/boost/python/stl_iterator.hpp: In member function '__ct_base ': /usr/include/boost/python/stl_iterator.hpp:48:16: note: '' declared here 48 | return extract(this->impl_.current().get())(); | ^ In member function '__ct ', inlined from 'dereference' at /usr/include/boost/python/stl_iterator.hpp:48:61, inlined from 'dereference' at /usr/include/boost/iterator/iterator_facade.hpp:550:32, inlined from 'operator*' at /usr/include/boost/iterator/iterator_facade.hpp:656:69, inlined from '__ct_base ' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/RGroupDecomposition/Wrap/rdRGroupComposition.cpp:70:14: /usr/include/boost/smart_ptr/shared_ptr.hpp:458:66: warning: 'MEM[(const struct shared_ptr &)&D.20136 + 24].px' may be used uninitialized [-Wmaybe-uninitialized] 458 | shared_ptr( shared_ptr const & r ) BOOST_SP_NOEXCEPT : px( r.px ), pn( r.pn ) | ^ /usr/include/boost/python/stl_iterator.hpp: In member function '__ct_base ': /usr/include/boost/python/stl_iterator.hpp:48:16: note: '' declared here 48 | return extract(this->impl_.current().get())(); | ^ In member function '__ct ', inlined from 'dereference' at /usr/include/boost/python/stl_iterator.hpp:48:61, inlined from 'dereference' at /usr/include/boost/iterator/iterator_facade.hpp:550:32, inlined from 'operator*' at /usr/include/boost/iterator/iterator_facade.hpp:656:69, inlined from 'RGroupDecomp' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/RGroupDecomposition/Wrap/rdRGroupComposition.cpp:156:22: /usr/include/boost/smart_ptr/shared_ptr.hpp:458:66: warning: 'MEM[(const struct shared_ptr &)&D.41958 + 24].px' may be used uninitialized [-Wmaybe-uninitialized] 458 | shared_ptr( shared_ptr const & r ) BOOST_SP_NOEXCEPT : px( r.px ), pn( r.pn ) | ^ /usr/include/boost/python/stl_iterator.hpp: In function 'RGroupDecomp': /usr/include/boost/python/stl_iterator.hpp:48:16: note: '' declared here 48 | return extract(this->impl_.current().get())(); | ^ In member function '__ct ', inlined from 'dereference' at /usr/include/boost/python/stl_iterator.hpp:48:61, inlined from 'dereference' at /usr/include/boost/iterator/iterator_facade.hpp:550:32, inlined from 'operator*' at /usr/include/boost/iterator/iterator_facade.hpp:656:69, inlined from 'RGroupDecomp' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/RGroupDecomposition/Wrap/rdRGroupComposition.cpp:153:10: /usr/include/boost/smart_ptr/shared_ptr.hpp:458:66: warning: 'MEM[(const struct shared_ptr &)&D.41848 + 24].px' may be used uninitialized [-Wmaybe-uninitialized] 458 | shared_ptr( shared_ptr const & r ) BOOST_SP_NOEXCEPT : px( r.px ), pn( r.pn ) | ^ /usr/include/boost/python/stl_iterator.hpp: In function 'RGroupDecomp': /usr/include/boost/python/stl_iterator.hpp:48:16: note: '' declared here 48 | return extract(this->impl_.current().get())(); | ^ [ 93%] Linking CXX executable molStandardizeTest cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molStandardizeTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/molStandardizeTest.dir/test1.cpp.o -o molStandardizeTest ../../../lib/libRDKitMolStandardize.so.1.2023.03.2 ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 93%] Built target rdRGroupDecomposition /usr/bin/gmake -f Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 94%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/testNormalize.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/testNormalize.cpp.o -MF CMakeFiles/molNormalizeTest.dir/testNormalize.cpp.o.d -o CMakeFiles/molNormalizeTest.dir/testNormalize.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/testNormalize.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/testNormalize.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 94%] Built target molStandardizeTest /usr/bin/gmake -f 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94%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/testValidate.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 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CMakeFiles/molStandardizeSmallTest.dir/test2.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/test2.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/test2.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 94%] Linking CXX executable molStandardizeSmallTest cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molStandardizeSmallTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall 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Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/testFragment.cpp.o -MF CMakeFiles/molFragmentTest.dir/testFragment.cpp.o.d -o CMakeFiles/molFragmentTest.dir/testFragment.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/testFragment.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/testFragment.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 95%] Linking CXX executable molTautomerTest cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molTautomerTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection 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../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 95%] Built target molFragmentTest /usr/bin/gmake -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeCatchTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeCatchTest.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeCatchTest.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeCatchTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeCatchTest.dir/build gmake[2]: Entering directory 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Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Validate.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Wrap && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security 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cmake_link_script CMakeFiles/molStandardizeCatchTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/molStandardizeCatchTest.dir/catch_tests.cpp.o -o molStandardizeCatchTest ../../RDGeneral/librdkitCatch.so ../../../lib/libRDKitMolStandardize.so.1.2023.03.2 ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 95%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Charge.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Wrap && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 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95%] Linking CXX shared library ../../../lib/libRDKitScaffoldNetwork.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ScaffoldNetwork && /usr/bin/cmake -E cmake_link_script CMakeFiles/ScaffoldNetwork.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared 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-I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o -MF CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o.d -o CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o -c 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../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 96%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Metal.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Wrap && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB 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Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Tautomer.cpp.o -MF CMakeFiles/rdMolStandardize.dir/Tautomer.cpp.o.d -o CMakeFiles/rdMolStandardize.dir/Tautomer.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Wrap/Tautomer.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Wrap/Tautomer.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 97%] Linking CXX shared module ../../../../rdkit/Chem/rdMolEnumerator.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolEnumerator/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolEnumerator.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic 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../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 97%] Built target rdMolEnumerator /usr/bin/gmake -f Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/build.make Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/build.make Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 98%] Building CXX object Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/TautomerQuery.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_TAUTOMERQUERY_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DTautomerQuery_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/TautomerQuery.cpp.o -MF CMakeFiles/TautomerQuery.dir/TautomerQuery.cpp.o.d -o CMakeFiles/TautomerQuery.dir/TautomerQuery.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery/TautomerQuery.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery/TautomerQuery.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 98%] Linking CXX shared module ../../../../rdkit/Chem/MolStandardize/rdMolStandardize.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolStandardize.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/MolStandardize/rdMolStandardize.so CMakeFiles/rdMolStandardize.dir/rdMolStandardize.cpp.o CMakeFiles/rdMolStandardize.dir/Validate.cpp.o CMakeFiles/rdMolStandardize.dir/Charge.cpp.o CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o CMakeFiles/rdMolStandardize.dir/Normalize.cpp.o CMakeFiles/rdMolStandardize.dir/Metal.cpp.o CMakeFiles/rdMolStandardize.dir/Tautomer.cpp.o ../../../../lib/libRDKitMolStandardize.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../../lib/libRDKitFingerprints.so.1.2023.03.2 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../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 98%] Linking CXX shared library ../../../lib/libRDKitTautomerQuery.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery && /usr/bin/cmake -E cmake_link_script CMakeFiles/TautomerQuery.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitTautomerQuery.so.1 -o ../../../lib/libRDKitTautomerQuery.so.1.2023.03.2 CMakeFiles/TautomerQuery.dir/TautomerQuery.cpp.o ../../../lib/libRDKitMolStandardize.so.1.2023.03.2 ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitTautomerQuery.so.1.2023.03.2 ../../../lib/libRDKitTautomerQuery.so.1 ../../../lib/libRDKitTautomerQuery.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 98%] Built target TautomerQuery /usr/bin/gmake -f Code/GraphMol/ScaffoldNetwork/CMakeFiles/testScaffoldNetwork.dir/build.make Code/GraphMol/ScaffoldNetwork/CMakeFiles/testScaffoldNetwork.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ScaffoldNetwork /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ScaffoldNetwork /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ScaffoldNetwork/CMakeFiles/testScaffoldNetwork.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/ScaffoldNetwork/CMakeFiles/testScaffoldNetwork.dir/build.make Code/GraphMol/ScaffoldNetwork/CMakeFiles/testScaffoldNetwork.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 98%] Building CXX object Code/GraphMol/ScaffoldNetwork/CMakeFiles/testScaffoldNetwork.dir/catch_tests.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ScaffoldNetwork && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/ScaffoldNetwork/CMakeFiles/testScaffoldNetwork.dir/catch_tests.cpp.o -MF CMakeFiles/testScaffoldNetwork.dir/catch_tests.cpp.o.d -o CMakeFiles/testScaffoldNetwork.dir/catch_tests.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ScaffoldNetwork/catch_tests.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ScaffoldNetwork/catch_tests.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 98%] Built target rdMolStandardize /usr/bin/gmake -f Code/GraphMol/ScaffoldNetwork/Wrap/CMakeFiles/rdScaffoldNetwork.dir/build.make Code/GraphMol/ScaffoldNetwork/Wrap/CMakeFiles/rdScaffoldNetwork.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ScaffoldNetwork/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ScaffoldNetwork/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ScaffoldNetwork/Wrap/CMakeFiles/rdScaffoldNetwork.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/ScaffoldNetwork/Wrap/CMakeFiles/rdScaffoldNetwork.dir/build.make Code/GraphMol/ScaffoldNetwork/Wrap/CMakeFiles/rdScaffoldNetwork.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 98%] Building CXX object Code/GraphMol/ScaffoldNetwork/Wrap/CMakeFiles/rdScaffoldNetwork.dir/rdScaffoldNetwork.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ScaffoldNetwork/Wrap && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdScaffoldNetwork_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ScaffoldNetwork/Wrap/CMakeFiles/rdScaffoldNetwork.dir/rdScaffoldNetwork.cpp.o -MF CMakeFiles/rdScaffoldNetwork.dir/rdScaffoldNetwork.cpp.o.d -o CMakeFiles/rdScaffoldNetwork.dir/rdScaffoldNetwork.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ScaffoldNetwork/Wrap/rdScaffoldNetwork.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ScaffoldNetwork/Wrap/rdScaffoldNetwork.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 98%] Linking CXX executable testScaffoldNetwork cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ScaffoldNetwork && /usr/bin/cmake -E cmake_link_script CMakeFiles/testScaffoldNetwork.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testScaffoldNetwork.dir/catch_tests.cpp.o -o testScaffoldNetwork ../../RDGeneral/librdkitCatch.so ../../../lib/libRDKitScaffoldNetwork.so.1.2023.03.2 ../../../lib/libRDKitMolStandardize.so.1.2023.03.2 ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 98%] Built target testScaffoldNetwork /usr/bin/gmake -f Code/GraphMol/TautomerQuery/CMakeFiles/tautomerQueryTestCatch.dir/build.make Code/GraphMol/TautomerQuery/CMakeFiles/tautomerQueryTestCatch.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery/CMakeFiles/tautomerQueryTestCatch.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/TautomerQuery/CMakeFiles/tautomerQueryTestCatch.dir/build.make Code/GraphMol/TautomerQuery/CMakeFiles/tautomerQueryTestCatch.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 98%] Building CXX object Code/GraphMol/TautomerQuery/CMakeFiles/tautomerQueryTestCatch.dir/catch_tests.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/TautomerQuery/CMakeFiles/tautomerQueryTestCatch.dir/catch_tests.cpp.o -MF CMakeFiles/tautomerQueryTestCatch.dir/catch_tests.cpp.o.d -o CMakeFiles/tautomerQueryTestCatch.dir/catch_tests.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery/catch_tests.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery/catch_tests.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 98%] Linking CXX shared module ../../../../rdkit/Chem/Scaffolds/rdScaffoldNetwork.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ScaffoldNetwork/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdScaffoldNetwork.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/Scaffolds/rdScaffoldNetwork.so CMakeFiles/rdScaffoldNetwork.dir/rdScaffoldNetwork.cpp.o ../../../../lib/libRDKitScaffoldNetwork.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitMolStandardize.so.1.2023.03.2 ../../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl In member function '__ct ', inlined from 'dereference' at /usr/include/boost/python/stl_iterator.hpp:48:61, inlined from 'dereference' at /usr/include/boost/iterator/iterator_facade.hpp:550:32, inlined from 'operator*' at /usr/include/boost/iterator/iterator_facade.hpp:656:69, inlined from '_M_range_initialize' at /usr/include/c++/13/bits/stl_vector.h:1670:20, inlined from '__ct ' at /usr/include/c++/13/bits/stl_vector.h:708:23, inlined from 'pythonObjectToVect' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDBoost/Wrap.h:140:15: /usr/include/boost/smart_ptr/shared_ptr.hpp:458:66: warning: 'MEM[(const struct shared_ptr &)&D.12775 + 24].px' may be used uninitialized [-Wmaybe-uninitialized] 458 | shared_ptr( shared_ptr const & r ) BOOST_SP_NOEXCEPT : px( r.px ), pn( r.pn ) | ^ /usr/include/boost/python/stl_iterator.hpp: In function 'pythonObjectToVect': /usr/include/boost/python/stl_iterator.hpp:48:16: note: '' declared here 48 | return extract(this->impl_.current().get())(); | ^ gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 98%] Built target rdScaffoldNetwork /usr/bin/gmake -f Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/build.make Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/build.make Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 98%] Building CXX object Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/rdTautomerQuery.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery/Wrap && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdTautomerQuery_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/rdTautomerQuery.cpp.o -MF CMakeFiles/rdTautomerQuery.dir/rdTautomerQuery.cpp.o.d -o CMakeFiles/rdTautomerQuery.dir/rdTautomerQuery.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery/Wrap/rdTautomerQuery.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery/Wrap/rdTautomerQuery.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 98%] Linking CXX executable tautomerQueryTestCatch cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery && /usr/bin/cmake -E cmake_link_script CMakeFiles/tautomerQueryTestCatch.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/tautomerQueryTestCatch.dir/catch_tests.cpp.o -o tautomerQueryTestCatch ../../RDGeneral/librdkitCatch.so ../../../lib/libRDKitTautomerQuery.so.1.2023.03.2 ../../../lib/libRDKitMolStandardize.so.1.2023.03.2 ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.78.0 gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 98%] Built target tautomerQueryTestCatch /usr/bin/gmake -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 98%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTLIBRARY_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructLibrary_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o -MF CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o.d -o CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/SubstructLibrary.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/SubstructLibrary.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 99%] Linking CXX shared module ../../../../rdkit/Chem/rdTautomerQuery.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdTautomerQuery.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/rdTautomerQuery.so CMakeFiles/rdTautomerQuery.dir/rdTautomerQuery.cpp.o ../../../../lib/libRDKitTautomerQuery.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitMolStandardize.so.1.2023.03.2 ../../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 99%] Built target rdTautomerQuery [ 99%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/PatternFactory.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTLIBRARY_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructLibrary_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/PatternFactory.cpp.o -MF CMakeFiles/SubstructLibrary.dir/PatternFactory.cpp.o.d -o CMakeFiles/SubstructLibrary.dir/PatternFactory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/PatternFactory.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/PatternFactory.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 99%] Linking CXX shared library ../../../lib/libRDKitSubstructLibrary.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_link_script CMakeFiles/SubstructLibrary.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitSubstructLibrary.so.1 -o ../../../lib/libRDKitSubstructLibrary.so.1.2023.03.2 CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o CMakeFiles/SubstructLibrary.dir/PatternFactory.cpp.o ../../../lib/libRDKitTautomerQuery.so.1.2023.03.2 ../../../lib/libRDKitMolStandardize.so.1.2023.03.2 ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.78.0 cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubstructLibrary.so.1.2023.03.2 ../../../lib/libRDKitSubstructLibrary.so.1 ../../../lib/libRDKitSubstructLibrary.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 99%] Built target SubstructLibrary /usr/bin/gmake -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/depend /usr/bin/gmake -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryCatchTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryCatchTest.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/DependInfo.cmake --color= gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryCatchTest.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryCatchTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryCatchTest.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 99%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o -MF CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o.d -o CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/substructLibraryTest.cpp [ 99%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryCatchTest.dir/catch_tests.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryCatchTest.dir/catch_tests.cpp.o -MF CMakeFiles/substructLibraryCatchTest.dir/catch_tests.cpp.o.d -o CMakeFiles/substructLibraryCatchTest.dir/catch_tests.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/catch_tests.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/catch_tests.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/substructLibraryTest.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [100%] Linking CXX executable substructLibraryCatchTest cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_link_script CMakeFiles/substructLibraryCatchTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/substructLibraryCatchTest.dir/catch_tests.cpp.o -o substructLibraryCatchTest ../../RDGeneral/librdkitCatch.so ../../../lib/libRDKitSubstructLibrary.so.1.2023.03.2 ../../../lib/libRDKitTautomerQuery.so.1.2023.03.2 ../../../lib/libRDKitMolStandardize.so.1.2023.03.2 ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.78.0 [100%] Linking CXX executable substructLibraryTest cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_link_script CMakeFiles/substructLibraryTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o -o substructLibraryTest ../../../lib/libRDKitSubstructLibrary.so.1.2023.03.2 ../../../lib/libRDKitTautomerQuery.so.1.2023.03.2 ../../../lib/libRDKitMolStandardize.so.1.2023.03.2 ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [100%] Built target substructLibraryCatchTest /usr/bin/gmake -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [100%] Building CXX object Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSubstructLibrary_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o -MF CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o.d -o CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/Wrap/rdSubstructLibrary.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/Wrap/rdSubstructLibrary.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [100%] Built target substructLibraryTest [100%] Building CXX object Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSubstructLibrary_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o -MF CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o.d -o CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/Wrap/SubstructLibraryWrap.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/Wrap/SubstructLibraryWrap.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [100%] Linking CXX shared module ../../../../rdkit/Chem/rdSubstructLibrary.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSubstructLibrary.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/rdSubstructLibrary.so CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o ../../../../lib/libRDKitSubstructLibrary.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitTautomerQuery.so.1.2023.03.2 ../../../../lib/libRDKitMolStandardize.so.1.2023.03.2 ../../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.78.0 /usr/lib64/libboost_iostreams.so.1.78.0 /usr/lib64/libz.so ../../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.78.0 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.78.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [100%] Built target rdSubstructLibrary gmake[1]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/rdkit-Release_2023_03_2/CMakeFiles 0 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.YI1Mfr + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64 ++ dirname /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd rdkit-Release_2023_03_2 + DESTDIR=/builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64 + /usr/bin/cmake --install . -- Install configuration: "Release" -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/rdBase.so -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/CTestTestfile.cmake -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/cmake_install.cmake -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/Makefile -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/RDPaths.py -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/utils -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/utils/spiral.py -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/utils/retest.txt -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/utils/listutils.py -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/utils/fileutils.py -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/utils/comhack.py -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/utils/chemutils.py -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/utils/chemdraw_qax.py -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/utils/chemdraw.py -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/utils/cactvs.py -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/utils/__init__.py -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/sping -- Installing: 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/builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/ML/InfoTheory/rdInfoTheory.so -- Up-to-date: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/ML/Data/cQuantize.so -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/libRDKitChemicalFeatures.so.1.2023.03.2 -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/libRDKitChemicalFeatures.so.1 -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/libRDKitChemicalFeatures.so -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/include/rdkit/ChemicalFeatures/ChemicalFeature.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/include/rdkit/ChemicalFeatures/FreeChemicalFeature.h -- Up-to-date: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/rdChemicalFeatures.so ===================================================================== PostgreSQL cartridge installation succeeded. ===================================================================== Restart the PostgreSQL service before using the PostgreSQL RDKit cartridge. ===================================================================== -- Up-to-date: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/RDPaths.py + mkdir -p /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/share/pgsql/extension + install -pm 644 Code/PgSQL/rdkit/rdkit--4.3.0.sql /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/share/pgsql/extension/ + install -pm 644 Code/PgSQL/rdkit/rdkit.control /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/share/pgsql/extension/ + install -pm 644 Code/PgSQL/rdkit/update_sql/rdkit--3.8--4.0.sql Code/PgSQL/rdkit/update_sql/rdkit--4.0--4.0.1.sql Code/PgSQL/rdkit/update_sql/rdkit--4.0.1--4.1.sql Code/PgSQL/rdkit/update_sql/rdkit--4.1--4.1.1.sql Code/PgSQL/rdkit/update_sql/rdkit--4.1.1--4.2.sql Code/PgSQL/rdkit/update_sql/rdkit--4.2--4.3.0.sql /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/share/pgsql/extension/ + install -Dpm 755 Code/PgSQL/rdkit/librdkit.so /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/pgsql/rdkit.so + chrpath -d /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/pgsql/rdkit.so + rm -r /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/share/RDKit + FMCS=/builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/fmcs/fmcs + sed '1{\@^#!/usr/bin/python3@d}' /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/fmcs/fmcs.py + touch -r /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/fmcs/fmcs.py /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/fmcs/fmcs.new + mv /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/fmcs/fmcs.new /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/fmcs/fmcs.py + rm /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/fmcs/fmcs + install -pm 755 Code/RDGeneral/librdkitCatch.so /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/librdkitCatch.so.1.2023.03.2 + install -pm 755 Code/RDGeneral/librdkitCatch.so /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/librdkitCatch.so.1 + install -pm 755 Code/RDGeneral/librdkitCatch.so /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/librdkitCatch.so + pushd /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64 ~/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64 ~/build/BUILD/rdkit-Release_2023_03_2 + ln -fs librdkitCatch.so.1.2023.03.2 librdkitCatch.so + ln -fs librdkitCatch.so.1.2023.03.2 librdkitCatch.so.1 + popd ~/build/BUILD/rdkit-Release_2023_03_2 + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 2023.03.2-1.fc38 --unique-debug-suffix -2023.03.2-1.fc38.x86_64 --unique-debug-src-base rdkit-2023.03.2-1.fc38.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/rdkit-Release_2023_03_2 extracting debug info from /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/libRDKitAbbreviations.so.1.2023.03.2 extracting debug info from /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/libRDKitAlignment.so.1.2023.03.2 /usr/bin/gdb.minimal /usr/bin/gdb.minimal extracting debug info from 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info from /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/rdMolAlign.so /usr/bin/gdb.minimal extracting debug info from /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/rdMolCatalog.so /usr/bin/gdb.minimal extracting debug info from /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/rdMolChemicalFeatures.so /usr/bin/gdb.minimal extracting debug info from /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/rdMolDescriptors.so /usr/bin/gdb.minimal extracting debug info from /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/rdMolEnumerator.so /usr/bin/gdb.minimal extracting debug info from /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/rdMolHash.so /usr/bin/gdb.minimal extracting debug info from /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/rdMolTransforms.so /usr/bin/gdb.minimal extracting debug info from /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/rdPartialCharges.so /usr/bin/gdb.minimal extracting debug info from /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/rdRGroupDecomposition.so /usr/bin/gdb.minimal extracting debug info from /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/rdReducedGraphs.so /usr/bin/gdb.minimal extracting debug info from /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/rdSLNParse.so /usr/bin/gdb.minimal extracting debug info from /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/rdShapeHelpers.so /usr/bin/gdb.minimal extracting debug info from /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/rdSubstructLibrary.so /usr/bin/gdb.minimal extracting debug info from /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/rdTautomerQuery.so /usr/bin/gdb.minimal extracting debug info from /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/rdchem.so extracting debug info from /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/rdfiltercatalog.so /usr/bin/gdb.minimal /usr/bin/gdb.minimal extracting debug info from /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/rdfragcatalog.so /usr/bin/gdb.minimal extracting debug info from /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/rdinchi.so /usr/bin/gdb.minimal extracting debug info from /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/rdmolfiles.so /usr/bin/gdb.minimal extracting debug info from /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/rdmolops.so /usr/bin/gdb.minimal extracting debug info from /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/rdqueries.so extracting debug info from /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/rdtrajectory.so /usr/bin/gdb.minimal /usr/bin/gdb.minimal extracting debug info from /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.so /usr/bin/gdb.minimal extracting debug info from /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/DataStructs/cDataStructs.so extracting debug info from /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/DistanceGeometry/DistGeom.so /usr/bin/gdb.minimal /usr/bin/gdb.minimal extracting debug info from /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/ForceField/rdForceField.so /usr/bin/gdb.minimal extracting debug info from /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/Geometry/rdGeometry.so /usr/bin/gdb.minimal extracting debug info from /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/ML/Cluster/Clustering.so extracting debug info from /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/ML/Data/cQuantize.so /usr/bin/gdb.minimal /usr/bin/gdb.minimal extracting debug info from /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/ML/InfoTheory/rdInfoTheory.so extracting debug info from /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/Numerics/rdAlignment.so /usr/bin/gdb.minimal /usr/bin/gdb.minimal extracting debug info from /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/SimDivFilters/rdSimDivPickers.so /usr/bin/gdb.minimal extracting debug info from /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages/rdkit/rdBase.so /usr/bin/gdb.minimal original debug info size: 713064kB, size after compression: 559200kB /usr/bin/sepdebugcrcfix: Updated 105 CRC32s, 0 CRC32s did match. cpio: Code/GraphMol/SmilesParse/C:/Users/glandrum/RDKit_git/Code/GraphMol/SmilesParse/smiles.tab.hpp: Cannot stat: No such file or directory 21036 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs *** WARNING: ./usr/src/debug/rdkit-2023.03.2-1.fc38.x86_64/Code/GraphMol/MolDraw2D/DrawMol.h is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/rdkit-2023.03.2-1.fc38.x86_64/Code/GraphMol/MolDraw2D/DrawMol.cpp is executable but has no shebang, removing executable bit + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib/debug/usr/lib64/python3.11 using python3.11 Bytecompiling .py files below /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11 using python3.11 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.WX7mcu + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd rdkit-Release_2023_03_2 + export LD_LIBRARY_PATH=/builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64 + LD_LIBRARY_PATH=/builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64 + export PYTHONPATH=/builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages + PYTHONPATH=/builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages + export RDBASE=/builddir/build/BUILD/rdkit-Release_2023_03_2 + RDBASE=/builddir/build/BUILD/rdkit-Release_2023_03_2 + /usr/bin/ctest --test-dir . --output-on-failure --force-new-ctest-process -j2 -- -E 'pythonTestDirChem|pythonTestDirDBase|testPgSQL' Test project /builddir/build/BUILD/rdkit-Release_2023_03_2 Start 1: testInchi Start 2: testDict 1/198 Test #2: testDict ............................... Passed 2.95 sec Start 3: testRDValue 2/198 Test #3: testRDValue ............................ Passed 0.01 sec Start 4: testConcurrentQueue 3/198 Test #1: testInchi .............................. Passed 16.65 sec Start 5: dictTestsCatch 4/198 Test #5: dictTestsCatch ......................... Passed 0.00 sec Start 6: logTestsCatch 5/198 Test #6: logTestsCatch .......................... Passed 0.00 sec Start 7: testDataStructs 6/198 Test #7: testDataStructs ........................ Passed 0.01 sec Start 8: testFPB 7/198 Test #8: testFPB ................................ Passed 0.01 sec Start 9: testMultiFPB 8/198 Test #9: testMultiFPB ........................... Passed 0.01 sec Start 10: pyBV 9/198 Test #10: pyBV ................................... Passed 3.05 sec Start 11: pyDiscreteValueVect 10/198 Test #11: pyDiscreteValueVect .................... Passed 0.16 sec Start 12: pySparseIntVect 11/198 Test #12: pySparseIntVect ........................ Passed 0.17 sec Start 13: pyFPB 12/198 Test #13: pyFPB .................................. Passed 0.17 sec Start 14: testTransforms 13/198 Test #14: testTransforms ......................... Passed 0.01 sec Start 15: testGrid 14/198 Test #15: testGrid ............................... Passed 0.02 sec Start 16: geometryTestsCatch 15/198 Test #16: geometryTestsCatch ..................... Passed 0.01 sec Start 17: testPyGeometry 16/198 Test #17: testPyGeometry ......................... Passed 0.18 sec Start 18: testMatrices 17/198 Test #18: testMatrices ........................... Passed 0.00 sec Start 19: testConrec 18/198 Test #19: testConrec ............................. Passed 0.02 sec Start 20: testAlignment 19/198 Test #20: testAlignment .......................... Passed 0.01 sec Start 21: pyAlignment 20/198 Test #21: pyAlignment ............................ Passed 0.16 sec Start 22: testOptimizer 21/198 Test #22: testOptimizer .......................... Passed 0.00 sec Start 23: testUFFForceField 22/198 Test #23: testUFFForceField ...................... Passed 0.21 sec Start 24: testMMFFForceField 23/198 Test #4: testConcurrentQueue .................... Passed 26.96 sec Start 25: pyForceFieldConstraints 24/198 Test #24: testMMFFForceField ..................... Passed 9.30 sec Start 26: testDistGeom 25/198 Test #26: testDistGeom ........................... Passed 0.01 sec Start 27: pyDistGeom 26/198 Test #27: pyDistGeom ............................. Passed 0.10 sec Start 28: graphmolTest1 27/198 Test #25: pyForceFieldConstraints ................ Passed 0.70 sec Start 29: graphmolcpTest 28/198 Test #29: graphmolcpTest ......................... Passed 0.02 sec Start 30: graphmolqueryTest 29/198 Test #30: graphmolqueryTest ...................... Passed 0.02 sec Start 31: graphmolMolOpsTest 30/198 Test #31: graphmolMolOpsTest ..................... Passed 0.72 sec Start 32: graphmoltestChirality 31/198 Test #32: graphmoltestChirality .................. Passed 0.05 sec Start 33: graphmoltestPickler 32/198 Test #33: graphmoltestPickler .................... Passed 0.20 sec Start 34: graphmoltestPicklerGlobalSetting 33/198 Test #34: graphmoltestPicklerGlobalSetting ....... Passed 0.02 sec Start 35: graphmolIterTest 34/198 Test #35: graphmolIterTest ....................... Passed 0.02 sec Start 36: hanoiTest 35/198 Test #36: hanoiTest .............................. Passed 2.20 sec Start 37: graphmolMemTest1 36/198 Test #37: graphmolMemTest1 ....................... Passed 0.01 sec Start 38: resMolSupplierTest 37/198 Test #38: resMolSupplierTest ..................... Passed 3.05 sec Start 39: molBundleTest 38/198 Test #39: molBundleTest .......................... Passed 0.02 sec Start 40: testSGroup 39/198 Test #40: testSGroup ............................. Passed 0.02 sec Start 41: test-valgrind 40/198 Test #41: test-valgrind .......................... Passed 0.02 sec Start 42: graphmolTestsCatch 41/198 Test #42: graphmolTestsCatch ..................... Passed 0.06 sec Start 43: graphmolOrganometallicsCatch 42/198 Test #43: graphmolOrganometallicsCatch ........... Passed 0.03 sec Start 44: graphmolSGroupCatch 43/198 Test #44: graphmolSGroupCatch .................... Passed 0.02 sec Start 45: graphmolAdjustQueryCatch 44/198 Test #45: graphmolAdjustQueryCatch ............... Passed 0.04 sec Start 46: chiralityTestsCatch 45/198 Test #46: chiralityTestsCatch .................... Passed 0.05 sec Start 47: canonTestsCatch 46/198 Test #47: canonTestsCatch ........................ Passed 0.02 sec Start 48: moliteratorTestsCatch 47/198 Test #48: moliteratorTestsCatch .................. Passed 0.02 sec Start 49: queryTestsCatch 48/198 Test #49: queryTestsCatch ........................ Passed 0.02 sec Start 50: smiTest1 49/198 Test #50: smiTest1 ............................... Passed 0.15 sec Start 51: smiTest2 50/198 Test #51: smiTest2 ............................... Passed 0.01 sec Start 52: cxsmilesTest 51/198 Test #52: cxsmilesTest ........................... Passed 0.02 sec Start 53: smaTest1 52/198 Test #53: smaTest1 ............................... Passed 0.10 sec Start 54: smiTestCatch 53/198 Test #54: smiTestCatch ........................... Passed 0.09 sec Start 55: nontetrahedralCatch 54/198 Test #55: nontetrahedralCatch .................... Passed 0.04 sec Start 56: testDepictor 55/198 Test #56: testDepictor ........................... Passed 0.28 sec Start 57: depictorCatch 56/198 Test #57: depictorCatch .......................... Passed 0.04 sec Start 58: pyDepictor 57/198 Test #58: pyDepictor ............................. Passed 0.39 sec Start 59: fileParsersTest1 58/198 Test #59: fileParsersTest1 ....................... Passed 5.25 sec Start 60: testMolSupplier 59/198 Test #60: testMolSupplier ........................ Passed 0.18 sec Start 61: testGeneralFileReader 60/198 Test #61: testGeneralFileReader .................. Passed 0.08 sec Start 62: testMultithreadedMolSupplier 61/198 Test #28: graphmolTest1 .......................... Passed 14.09 sec Start 63: testMolWriter 62/198 Test #63: testMolWriter .......................... Passed 0.22 sec Start 64: testTplParser 63/198 Test #64: testTplParser .......................... Passed 0.02 sec Start 65: testMol2ToMol 64/198 Test #65: testMol2ToMol .......................... Passed 0.03 sec Start 66: testSequence 65/198 Test #66: testSequence ........................... Passed 0.03 sec Start 67: testExtendedStereoParsing 66/198 Test #67: testExtendedStereoParsing .............. Passed 0.02 sec Start 68: fileParsersCatchTest 67/198 Test #68: fileParsersCatchTest ................... Passed 0.12 sec Start 69: testPropertyLists 68/198 Test #69: testPropertyLists ...................... Passed 0.02 sec Start 70: XYZFileParserCatchTest 69/198 Test #70: XYZFileParserCatchTest ................. Passed 0.02 sec Start 71: cdxmlParserCatchTest 70/198 Test #71: cdxmlParserCatchTest ................... Passed 0.10 sec Start 72: molfileStereoCatchTest 71/198 Test #72: molfileStereoCatchTest ................. Passed 0.02 sec Start 73: testSubstructMatch 72/198 Test #73: testSubstructMatch ..................... Passed 0.27 sec Start 74: substructTestCatch 73/198 Test #74: substructTestCatch ..................... Passed 0.22 sec Start 75: testGenericGroups 74/198 Test #75: testGenericGroups ...................... Passed 0.04 sec Start 76: testReaction 75/198 Test #76: testReaction ........................... Passed 0.39 sec Start 77: testReactionFingerprints 76/198 Test #77: testReactionFingerprints ............... Passed 0.05 sec Start 78: testEnumeration 77/198 Test #62: testMultithreadedMolSupplier ........... Passed 5.52 sec Start 79: rxnTestCatch 78/198 Test #79: rxnTestCatch ........................... Passed 0.05 sec Start 80: pyChemReactions 79/198 Test #80: pyChemReactions ........................ Passed 0.31 sec Start 81: pyChemReactionEnumerations 80/198 Test #81: pyChemReactionEnumerations ............. Passed 1.02 sec Start 82: pyChemReactionSanitize 81/198 Test #82: pyChemReactionSanitize ................. Passed 0.22 sec Start 83: testChemTransforms 82/198 Test #83: testChemTransforms ..................... Passed 0.05 sec Start 84: chemTransformsTestCatch 83/198 Test #84: chemTransformsTestCatch ................ Passed 0.07 sec Start 85: tautomerQueryTestCatch 84/198 Test #85: tautomerQueryTestCatch ................. Passed 0.12 sec Start 86: pyTautomerQuery 85/198 Test #86: pyTautomerQuery ........................ Passed 0.21 sec Start 87: testSubgraphs1 86/198 Test #87: testSubgraphs1 ......................... Passed 0.22 sec Start 88: testSubgraphs2 87/198 Test #88: testSubgraphs2 ......................... Passed 0.02 sec Start 89: subgraphsCatch 88/198 Test #89: subgraphsCatch ......................... Passed 0.02 sec Start 90: filterCatalogTest 89/198 Test #90: filterCatalogTest ...................... Passed 0.15 sec Start 91: pyFilterCatalog 90/198 Test #91: pyFilterCatalog ........................ Passed 0.74 sec Start 92: testFragCatalog 91/198 Test #78: testEnumeration ........................ Passed 6.98 sec Start 93: pyFragCatalog 92/198 Test #92: testFragCatalog ........................ Passed 0.44 sec Start 94: testDescriptors 93/198 Test #93: pyFragCatalog .......................... Passed 0.22 sec Start 95: testAUTOCORR2D 94/198 Test #95: testAUTOCORR2D ......................... Passed 0.51 sec Start 96: testATF 95/198 Test #96: testATF ................................ Passed 0.03 sec Start 97: testBCUT 96/198 Test #97: testBCUT ............................... Passed 0.90 sec Start 98: descriptorsTestCatch 97/198 Test #98: descriptorsTestCatch ................... Passed 0.07 sec Start 99: pyMolDescriptors 98/198 Test #99: pyMolDescriptors ....................... Passed 0.59 sec Start 100: pyMolDescriptors3D 99/198 Test #100: pyMolDescriptors3D ..................... Passed 0.52 sec Start 101: testFingerprints 100/198 Test #94: testDescriptors ........................ Passed 3.45 sec Start 102: testMHFPFingerprint 101/198 Test #102: testMHFPFingerprint .................... Passed 0.14 sec Start 103: testFingerprintGenerators 102/198 Test #103: testFingerprintGenerators .............. Passed 1.36 sec Start 104: fpTestCatch 103/198 Test #104: fpTestCatch ............................ Passed 0.07 sec Start 105: fpGenTestCatch 104/198 Test #105: fpGenTestCatch ......................... Passed 0.05 sec Start 106: pyTestGenerator 105/198 Test #106: pyTestGenerator ........................ Passed 0.57 sec Start 107: pyTestMHFP 106/198 Test #107: pyTestMHFP ............................. Passed 0.50 sec Start 108: testPartialCharges 107/198 Test #108: testPartialCharges ..................... Passed 0.05 sec Start 109: pyPartialCharges 108/198 Test #109: pyPartialCharges ....................... Passed 0.60 sec Start 110: testMolTransforms 109/198 Test #110: testMolTransforms ...................... Passed 0.06 sec Start 111: pyMolTransforms 110/198 Test #111: pyMolTransforms ........................ Passed 0.54 sec Start 112: testMMFFForceFieldHelpers 111/198 Test #101: testFingerprints ....................... Passed 6.21 sec Start 113: testMMFFForceFieldHelpersMultiThread 112/198 Test #113: testMMFFForceFieldHelpersMultiThread ... Passed 0.52 sec Start 114: testUFFForceFieldHelpers 113/198 Test #112: testMMFFForceFieldHelpers .............. Passed 7.95 sec Start 115: testCrystalForceField 114/198 Test #115: testCrystalForceField .................. Passed 0.07 sec Start 116: pyForceFieldHelpers 115/198 Test #116: pyForceFieldHelpers .................... Passed 0.39 sec Start 117: testDistGeomHelpers 116/198 Test #114: testUFFForceFieldHelpers ............... Passed 7.44 sec Start 118: distGeomHelpersCatch 117/198 Test #118: distGeomHelpersCatch ................... Passed 81.92 sec Start 119: pyDistGeomHelpers 118/198 Test #119: pyDistGeomHelpers ...................... Passed 38.73 sec Start 120: testMolAlign 119/198 Test #120: testMolAlign ........................... Passed 0.10 sec Start 121: testO3AAlign 120/198 Test #121: testO3AAlign ........................... Passed 33.27 sec Start 122: molAlignCatchTest 121/198 Test #122: molAlignCatchTest ...................... Passed 0.02 sec Start 123: pyMolAlign 122/198 Test #117: testDistGeomHelpers .................... Passed 163.80 sec Start 124: testFeatures 123/198 Test #124: testFeatures ........................... Passed 0.02 sec Start 125: pyChemicalFeatures 124/198 Test #123: pyMolAlign ............................. Passed 8.73 sec Start 126: testShapeHelpers 125/198 Test #126: testShapeHelpers ....................... Passed 0.02 sec Start 127: pyShapeHelpers 126/198 Test #127: pyShapeHelpers ......................... Passed 0.22 sec Start 128: testMolCatalog 127/198 Test #125: pyChemicalFeatures ..................... Passed 0.26 sec Start 129: pyMolCatalog 128/198 Test #128: testMolCatalog ......................... Passed 0.02 sec Start 130: moldraw2DTest1 129/198 Test #129: pyMolCatalog ........................... Passed 0.19 sec Start 131: moldraw2DTestCatch 130/198 Test #131: moldraw2DTestCatch ..................... Passed 3.20 sec Start 132: moldraw2DRxnTest1 131/198 Test #132: moldraw2DRxnTest1 ...................... Passed 0.87 sec Start 133: pyMolDraw2D 132/198 Test #133: pyMolDraw2D ............................ Passed 1.00 sec Start 134: testFMCS 133/198 Test #130: moldraw2DTest1 ......................... Passed 9.63 sec Start 135: pyFMCS 134/198 Test #134: testFMCS ............................... Passed 4.51 sec Start 136: FMCStest 135/198 Test #136: FMCStest ............................... Passed 0.02 sec Start 137: molHashCatchTest 136/198 Test #137: molHashCatchTest ....................... Passed 0.04 sec Start 138: pyMolHash 137/198 Test #138: pyMolHash .............................. Passed 0.19 sec Start 139: testMMPA 138/198 Test #139: testMMPA ............................... Passed 0.08 sec Start 140: pyMMPA 139/198 Test #140: pyMMPA ................................. Passed 1.02 sec Start 141: testCIPLabeler 140/198 Test #141: testCIPLabeler ......................... Passed 0.09 sec Start 142: pyCIPLabelsWrapTest 141/198 Test #142: pyCIPLabelsWrapTest .................... Passed 0.18 sec Start 143: pyCIPLabelsValidation 142/198 Test #135: pyFMCS ................................. Passed 3.06 sec Start 144: deprotectTest 143/198 Test #144: deprotectTest .......................... Passed 0.05 sec Start 145: pyDeprotect 144/198 Test #145: pyDeprotect ............................ Passed 0.20 sec Start 146: testReducedGraphs 145/198 Test #146: testReducedGraphs ...................... Passed 0.05 sec Start 147: pyReducedGraphs 146/198 Test #147: pyReducedGraphs ........................ Passed 0.19 sec Start 148: trajectoryTest 147/198 Test #148: trajectoryTest ......................... Passed 0.21 sec Start 149: substructLibraryTest 148/198 Test #143: pyCIPLabelsValidation .................. Passed 5.03 sec Start 150: substructLibraryCatchTest 149/198 Test #150: substructLibraryCatchTest .............. Passed 0.02 sec Start 151: pySubstructLibrary 150/198 Test #149: substructLibraryTest ................... Passed 4.16 sec Start 152: testRGroupDecomp 151/198 Test #151: pySubstructLibrary ..................... Passed 3.62 sec Start 153: testRGroupDecompInternals 152/198 Test #153: testRGroupDecompInternals .............. Passed 0.02 sec Start 154: rgroupCatchTests 153/198 Test #154: rgroupCatchTests ....................... Passed 0.14 sec Start 155: pyRGroupDecomposition 154/198 Test #155: pyRGroupDecomposition .................. Passed 1.43 sec Start 156: testSLNParse 155/198 Test #156: testSLNParse ........................... Passed 0.02 sec Start 157: pySLNParse 156/198 Test #157: pySLNParse ............................. Passed 0.18 sec Start 158: pyGraphMolWrap 157/198 Test #152: testRGroupDecomp ....................... Passed 5.27 sec Start 159: pyTestConformerWrap 158/198 Test #159: pyTestConformerWrap .................... Passed 0.19 sec Start 160: pyTestTrajectory 159/198 Test #160: pyTestTrajectory ....................... Passed 0.39 sec Start 161: pyTestSGroups 160/198 Test #161: pyTestSGroups .......................... Passed 0.20 sec Start 162: pyTestThreads 161/198 Test #162: pyTestThreads .......................... Passed 0.20 sec Start 163: pyTestMultithreadedMolSupplier 162/198 Test #163: pyTestMultithreadedMolSupplier ......... Passed 0.24 sec Start 164: pyTestPropertyLists 163/198 Test #164: pyTestPropertyLists .................... Passed 0.19 sec Start 165: pyCDXMLTest 164/198 Test #165: pyCDXMLTest ............................ Passed 0.20 sec Start 166: molStandardizeTest 165/198 Test #166: molStandardizeTest ..................... Passed 0.70 sec Start 167: molNormalizeTest 166/198 Test #167: molNormalizeTest ....................... Passed 0.09 sec Start 168: molValidateTest 167/198 Test #168: molValidateTest ........................ Passed 0.03 sec Start 169: molChargeTest 168/198 Test #169: molChargeTest .......................... Passed 0.06 sec Start 170: molTautomerTest 169/198 Test #170: molTautomerTest ........................ Passed 1.65 sec Start 171: molStandardizeSmallTest 170/198 Test #171: molStandardizeSmallTest ................ Passed 0.03 sec Start 172: molFragmentTest 171/198 Test #172: molFragmentTest ........................ Passed 0.03 sec Start 173: molStandardizeCatchTest 172/198 Test #173: molStandardizeCatchTest ................ Passed 0.14 sec Start 174: pyMolStandardize 173/198 Test #174: pyMolStandardize ....................... Passed 1.58 sec Start 175: testScaffoldNetwork 174/198 Test #175: testScaffoldNetwork .................... Passed 0.65 sec Start 176: pyScaffoldNetwork 175/198 Test #176: pyScaffoldNetwork ...................... Passed 0.20 sec Start 177: pyScaffoldNetworkPickling 176/198 Test #177: pyScaffoldNetworkPickling .............. Passed 0.18 sec Start 178: testMolEnumerator 177/198 Test #178: testMolEnumerator ...................... Passed 0.04 sec Start 179: pyMolEnumerator 178/198 Test #179: pyMolEnumerator ........................ Passed 0.18 sec Start 180: testAbbreviations 179/198 Test #180: testAbbreviations ...................... Passed 0.03 sec Start 181: pyAbbreviations 180/198 Test #181: pyAbbreviations ........................ Passed 0.18 sec Start 182: testQuery 181/198 Test #182: testQuery .............................. Passed 0.00 sec Start 183: testMatCalc 182/198 Test #183: testMatCalc ............................ Passed 0.00 sec Start 184: pyMatCalc 183/198 Test #184: pyMatCalc .............................. Passed 0.44 sec Start 185: testSimDivPickers 184/198 Test #185: testSimDivPickers ...................... Passed 0.00 sec Start 186: pickersTestsCatch 185/198 Test #186: pickersTestsCatch ...................... Passed 0.06 sec Start 187: pySimDivPickers 186/198 Test #158: pyGraphMolWrap ......................... Passed 9.40 sec Start 188: pyRanker 187/198 Test #188: pyRanker ............................... Passed 0.18 sec Start 189: testChemicalFeatures 188/198 Test #189: testChemicalFeatures ................... Passed 0.00 sec Start 190: pyFeatures 189/198 Test #190: pyFeatures ............................. Passed 0.18 sec Start 191: pythonTestDbCLI 190/198 Test #187: pySimDivPickers ........................ Passed 0.92 sec Start 192: pythonTestDirRoot 191/198 Test #192: pythonTestDirRoot ...................... Passed 0.20 sec Start 193: pythonTestDirML 192/198 Test #193: pythonTestDirML ........................ Passed 8.59 sec Start 194: pythonTestDirDataStructs 193/198 Test #194: pythonTestDirDataStructs ............... Passed 0.76 sec Start 195: pythonTestDirDbase 194/198 Test #195: pythonTestDirDbase ..................... Passed 0.44 sec Start 196: pythonTestDirSimDivFilters 195/198 Test #196: pythonTestDirSimDivFilters ............. Passed 0.25 sec Start 197: pythonTestDirVLib 196/198 Test #197: pythonTestDirVLib ...................... Passed 0.42 sec Start 198: pythonTestSping 197/198 Test #191: pythonTestDbCLI ........................ Passed 10.86 sec 198/198 Test #198: pythonTestSping ........................ Passed 0.32 sec 100% tests passed, 0 tests failed out of 198 Total Test time (real) = 275.68 sec + RPM_EC=0 ++ jobs -p + exit 0 Processing files: rdkit-2023.03.2-1.fc38.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.BUV3XU + umask 022 + cd /builddir/build/BUILD + cd rdkit-Release_2023_03_2 + DOCDIR=/builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/share/doc/rdkit + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/share/doc/rdkit + cp -pr ReleaseNotes.md /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/share/doc/rdkit + cp -pr README README.md /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/share/doc/rdkit + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.mGxyMg + umask 022 + cd /builddir/build/BUILD + cd rdkit-Release_2023_03_2 + LICENSEDIR=/builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/share/licenses/rdkit + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/share/licenses/rdkit + cp -pr license.txt /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/share/licenses/rdkit + RPM_EC=0 ++ jobs -p + exit 0 Provides: libRDKitAbbreviations.so.1()(64bit) libRDKitAlignment.so.1()(64bit) libRDKitCIPLabeler.so.1()(64bit) libRDKitCatalogs.so.1()(64bit) libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitChemicalFeatures.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDeprotect.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitDistGeomHelpers.so.1()(64bit) libRDKitDistGeometry.so.1()(64bit) libRDKitEigenSolvers.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFilterCatalog.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitForceField.so.1()(64bit) libRDKitForceFieldHelpers.so.1()(64bit) libRDKitFragCatalog.so.1()(64bit) libRDKitGenericGroups.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitInfoTheory.so.1()(64bit) libRDKitMMPA.so.1()(64bit) libRDKitMolAlign.so.1()(64bit) libRDKitMolCatalog.so.1()(64bit) libRDKitMolChemicalFeatures.so.1()(64bit) libRDKitMolDraw2D.so.1()(64bit) libRDKitMolEnumerator.so.1()(64bit) libRDKitMolHash.so.1()(64bit) libRDKitMolStandardize.so.1()(64bit) libRDKitMolTransforms.so.1()(64bit) libRDKitO3AAlign.so.1()(64bit) libRDKitOptimizer.so.1()(64bit) libRDKitPartialCharges.so.1()(64bit) libRDKitRDBoost.so.1()(64bit) libRDKitRDGeneral.so.1()(64bit) libRDKitRDGeometryLib.so.1()(64bit) libRDKitRDInchiLib.so.1()(64bit) libRDKitRDStreams.so.1()(64bit) libRDKitRGroupDecomposition.so.1()(64bit) libRDKitReducedGraphs.so.1()(64bit) libRDKitSLNParse.so.1()(64bit) libRDKitScaffoldNetwork.so.1()(64bit) libRDKitShapeHelpers.so.1()(64bit) libRDKitSimDivPickers.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitSubgraphs.so.1()(64bit) libRDKitSubstructLibrary.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libRDKitTautomerQuery.so.1()(64bit) libRDKitTrajectory.so.1()(64bit) libRDKitga.so.1()(64bit) libRDKithc.so.1()(64bit) librdkitCatch.so()(64bit) rdkit = 2023.03.2-1.fc38 rdkit(x86-64) = 2023.03.2-1.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-x86-64.so.2()(64bit) ld-linux-x86-64.so.2(GLIBC_2.3)(64bit) libRDKitAlignment.so.1()(64bit) libRDKitCatalogs.so.1()(64bit) libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitDistGeometry.so.1()(64bit) libRDKitEigenSolvers.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFilterCatalog.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitForceField.so.1()(64bit) libRDKitForceFieldHelpers.so.1()(64bit) libRDKitGenericGroups.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitMolAlign.so.1()(64bit) libRDKitMolStandardize.so.1()(64bit) libRDKitMolTransforms.so.1()(64bit) libRDKitPartialCharges.so.1()(64bit) libRDKitRDGeneral.so.1()(64bit) libRDKitRDGeometryLib.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitSubgraphs.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libRDKitTautomerQuery.so.1()(64bit) libRDKitga.so.1()(64bit) libRDKithc.so.1()(64bit) libboost_iostreams.so.1.78.0()(64bit) libboost_python311.so.1.78.0()(64bit) libboost_serialization.so.1.78.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libcairo.so.2()(64bit) libfreetype.so.6()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgcc_s.so.1(GCC_3.4)(64bit) libinchi.so.1()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libmaeparser.so.1()(64bit) libpython3.11.so.1.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.11)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.7)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.17)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.5)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Processing files: rdkit-devel-2023.03.2-1.fc38.x86_64 Provides: cmake(rdkit) = 2023.03.2 rdkit-devel = 2023.03.2-1.fc38 rdkit-devel(x86-64) = 2023.03.2-1.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: cmake-filesystem(x86-64) libRDKitAbbreviations.so.1()(64bit) libRDKitAlignment.so.1()(64bit) libRDKitCIPLabeler.so.1()(64bit) libRDKitCatalogs.so.1()(64bit) libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitChemicalFeatures.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDeprotect.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitDistGeomHelpers.so.1()(64bit) libRDKitDistGeometry.so.1()(64bit) libRDKitEigenSolvers.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFilterCatalog.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitForceField.so.1()(64bit) libRDKitForceFieldHelpers.so.1()(64bit) libRDKitFragCatalog.so.1()(64bit) libRDKitGenericGroups.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitInfoTheory.so.1()(64bit) libRDKitMMPA.so.1()(64bit) libRDKitMolAlign.so.1()(64bit) libRDKitMolCatalog.so.1()(64bit) libRDKitMolChemicalFeatures.so.1()(64bit) libRDKitMolDraw2D.so.1()(64bit) libRDKitMolEnumerator.so.1()(64bit) libRDKitMolHash.so.1()(64bit) libRDKitMolStandardize.so.1()(64bit) libRDKitMolTransforms.so.1()(64bit) libRDKitO3AAlign.so.1()(64bit) libRDKitOptimizer.so.1()(64bit) libRDKitPartialCharges.so.1()(64bit) libRDKitRDBoost.so.1()(64bit) libRDKitRDGeneral.so.1()(64bit) libRDKitRDGeometryLib.so.1()(64bit) libRDKitRDInchiLib.so.1()(64bit) libRDKitRDStreams.so.1()(64bit) libRDKitRGroupDecomposition.so.1()(64bit) libRDKitReducedGraphs.so.1()(64bit) libRDKitSLNParse.so.1()(64bit) libRDKitScaffoldNetwork.so.1()(64bit) libRDKitShapeHelpers.so.1()(64bit) libRDKitSimDivPickers.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitSubgraphs.so.1()(64bit) libRDKitSubstructLibrary.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libRDKitTautomerQuery.so.1()(64bit) libRDKitTrajectory.so.1()(64bit) libRDKitga.so.1()(64bit) libRDKithc.so.1()(64bit) librdkitCatch.so()(64bit) Processing files: rdkit-doc-2023.03.2-1.fc38.noarch Processing files: python3-rdkit-2023.03.2-1.fc38.x86_64 Provides: python-rdkit = 2023.03.2-1.fc38 python3-rdkit = 2023.03.2-1.fc38 python3-rdkit(x86-64) = 2023.03.2-1.fc38 python3.11-rdkit = 2023.03.2-1.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-x86-64.so.2()(64bit) ld-linux-x86-64.so.2(GLIBC_2.3)(64bit) libRDKitAbbreviations.so.1()(64bit) libRDKitAlignment.so.1()(64bit) libRDKitCIPLabeler.so.1()(64bit) libRDKitCatalogs.so.1()(64bit) libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitChemicalFeatures.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDeprotect.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitDistGeomHelpers.so.1()(64bit) libRDKitDistGeometry.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFilterCatalog.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitForceField.so.1()(64bit) libRDKitForceFieldHelpers.so.1()(64bit) libRDKitFragCatalog.so.1()(64bit) libRDKitGenericGroups.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitInfoTheory.so.1()(64bit) libRDKitMMPA.so.1()(64bit) libRDKitMolAlign.so.1()(64bit) libRDKitMolCatalog.so.1()(64bit) libRDKitMolChemicalFeatures.so.1()(64bit) libRDKitMolDraw2D.so.1()(64bit) libRDKitMolEnumerator.so.1()(64bit) libRDKitMolHash.so.1()(64bit) libRDKitMolStandardize.so.1()(64bit) libRDKitMolTransforms.so.1()(64bit) libRDKitO3AAlign.so.1()(64bit) libRDKitPartialCharges.so.1()(64bit) libRDKitRDBoost.so.1()(64bit) libRDKitRDGeneral.so.1()(64bit) libRDKitRDGeometryLib.so.1()(64bit) libRDKitRDInchiLib.so.1()(64bit) libRDKitRGroupDecomposition.so.1()(64bit) libRDKitReducedGraphs.so.1()(64bit) libRDKitSLNParse.so.1()(64bit) libRDKitScaffoldNetwork.so.1()(64bit) libRDKitShapeHelpers.so.1()(64bit) libRDKitSimDivPickers.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitSubgraphs.so.1()(64bit) libRDKitSubstructLibrary.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libRDKitTautomerQuery.so.1()(64bit) libRDKitTrajectory.so.1()(64bit) libRDKithc.so.1()(64bit) libboost_python311.so.1.78.0()(64bit) libboost_serialization.so.1.78.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libcairo.so.2()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libpython3.11.so.1.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.7)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.17)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) python(abi) = 3.11 rtld(GNU_HASH) Processing files: rdkit-postgresql-2023.03.2-1.fc38.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.RU4NfG + umask 022 + cd /builddir/build/BUILD + cd rdkit-Release_2023_03_2 + DOCDIR=/builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/share/doc/rdkit-postgresql + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/share/doc/rdkit-postgresql + cp -pr Code/PgSQL/rdkit/README_PgSQL.md /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64/usr/share/doc/rdkit-postgresql + RPM_EC=0 ++ jobs -p + exit 0 Provides: librdkit.so()(64bit) rdkit-postgresql = 2023.03.2-1.fc38 rdkit-postgresql(x86-64) = 2023.03.2-1.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitGenericGroups.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitMolDraw2D.so.1()(64bit) libRDKitMolHash.so.1()(64bit) libRDKitRDInchiLib.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) rtld(GNU_HASH) Processing files: rdkit-debugsource-2023.03.2-1.fc38.x86_64 Provides: rdkit-debugsource = 2023.03.2-1.fc38 rdkit-debugsource(x86-64) = 2023.03.2-1.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: rdkit-debuginfo-2023.03.2-1.fc38.x86_64 Provides: debuginfo(build-id) = 0693345c435d09ba68771b4f2bba89b8598521ea debuginfo(build-id) = 07de25379fe4e3d8f7456b9c178b667ee80ca4a5 debuginfo(build-id) = 09f79eb4f307d8e05fb68f7f2c79522c6873da35 debuginfo(build-id) = 0b59deadfd7cee19a69a8c1c3cb99368bd81d539 debuginfo(build-id) = 0c547f95e3b39322af38c1de9e0796ef0332d116 debuginfo(build-id) = 15bdf620028b9df0f2c10e1a15282dedac81dae7 debuginfo(build-id) = 175a9953bd5111aa46977bad889b751a44d96ed1 debuginfo(build-id) = 2249749a180081af20fb0f1db31fa38009d744c9 debuginfo(build-id) = 23fd7d70cfd9b38fabae2082dcee0c6eeedb5b58 debuginfo(build-id) = 3b8bdc5f74e3247b3aaab970c425df8691ca7732 debuginfo(build-id) = 3d9841591c572771cca1d3c1972703864e91046e debuginfo(build-id) = 44569bcc6c90f87f9e9d4acbd1cb325b8a6f8605 debuginfo(build-id) = 4ce960a2eb28ba4991738ff97528977a61c2e816 debuginfo(build-id) = 4d0ebcb7a505569b0c0ce3b45b60e052b0e47021 debuginfo(build-id) = 4d4976d8fe60f0ef379c6a14584aca2f4b661475 debuginfo(build-id) = 54a9887eb89ef28d623e4fb67622e7c2ee386267 debuginfo(build-id) = 551e5d0276452f191c49ab18ac71e278ce0ced6b debuginfo(build-id) = 552aa883013ed42ea6b7296faad1e5b3ebfa6035 debuginfo(build-id) = 58a42cfdb9e166fac60a31097d0ebc158fea0df3 debuginfo(build-id) = 5ec762cefd1af2806842c24701dd0771eee761dc debuginfo(build-id) = 5f2f53dcd79c4c38ee0c1eba0693ca20e7d80f15 debuginfo(build-id) = 6c5025e2498c2485e07e08ff204f8fb09d7fc701 debuginfo(build-id) = 6de85e0f978053bac45f1fef8edc4a72d9320a98 debuginfo(build-id) = 722646871fb071b58483252412ecbaf0fd8217ee debuginfo(build-id) = 74f26d3ffa3484112b9739b309f6e8a2849b324b debuginfo(build-id) = 76952198815488348c3a343307d208b41fd295cf debuginfo(build-id) = 8344b148985275eb0f5c4c179b1a5a94d57c6856 debuginfo(build-id) = 85705295f31305820ca7f0aed5726366132b4257 debuginfo(build-id) = 85c770a8ea06c63d614314315153833a2b74db6c debuginfo(build-id) = 8656bc6e98ed8abf9a4dcece12748342248b726d debuginfo(build-id) = 8f2856d0f70d58b2d1b7550381eb3f1caf02e541 debuginfo(build-id) = 9348061d525d420aa0423d50ce14618789c802af debuginfo(build-id) = 9b3ba1d25a6600c559889233362121cd1917f175 debuginfo(build-id) = 9fb0513272a8d07df5a30cd64b009f8a3b35a5ac debuginfo(build-id) = aa1bc84f34c260a33af429c174857468eb4478d3 debuginfo(build-id) = b23d146281f564186e4136aa246d8c873217dc2d debuginfo(build-id) = b2545aba6b0ad1ca49e7410b9fd4d2b7db34c739 debuginfo(build-id) = b39ccb0003118bfed1ccbc944a7abfa2fa58cdf4 debuginfo(build-id) = b5e36fac255da896fcc992b6863764a759c46f3a debuginfo(build-id) = b9a5146f5acf22d9eb8b548c79d3a03b40435776 debuginfo(build-id) = b9f38d7931aeb0776daad0d6389191c1ab5b72d4 debuginfo(build-id) = bbba139ad62cd7e72b208ea76b2c96679d1776c0 debuginfo(build-id) = bca021c18c4f068039e5e7d985bc269eeae45334 debuginfo(build-id) = c1bc8aa43dfd9c7d232ac4aeaff569faf907b1cb debuginfo(build-id) = c5e129efbd938c2d434c0d9759130b323348591a debuginfo(build-id) = caa434fe05e391c9c4686457be914b1ae58a15e7 debuginfo(build-id) = d0e914e7cea3f3bf0d7881834ab4948670c66492 debuginfo(build-id) = d7b252205fa9cf1c76356b66442c587b54ddee9b debuginfo(build-id) = e1bba981ec183ca9f8176ea0463b3c0de7face2b debuginfo(build-id) = e5af84b62d2167c9ff3556cc3679ef0fdae48e80 debuginfo(build-id) = ea62527c13fa8c956f646c33e0550b0b28314fd3 debuginfo(build-id) = eb9c06a1a2b78fa90ceac0771ebb434dbfaad23f debuginfo(build-id) = ec6b16812a406f989f3f6e548ebfc2839172485d debuginfo(build-id) = f0ffe7e39d8faefdfebad66adb004766fc96bb1a debuginfo(build-id) = f3f510b9359186cef974836f7b3a0485a5277d48 debuginfo(build-id) = f7c95aa2ae99c4babaf3a08e360fca69f5e7f9a3 libRDKitAbbreviations.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitAlignment.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitCIPLabeler.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitCatalogs.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitChemReactions.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitChemTransforms.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitChemicalFeatures.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitDataStructs.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitDepictor.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitDeprotect.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitDescriptors.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitDistGeomHelpers.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitDistGeometry.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitEigenSolvers.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitFMCS.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitFileParsers.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitFilterCatalog.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitFingerprints.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitForceField.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitForceFieldHelpers.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitFragCatalog.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitGenericGroups.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitGraphMol.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitInfoTheory.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitMMPA.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitMolAlign.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitMolCatalog.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitMolChemicalFeatures.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitMolDraw2D.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitMolEnumerator.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitMolHash.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitMolStandardize.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitMolTransforms.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitO3AAlign.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitOptimizer.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitPartialCharges.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitRDBoost.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitRDGeneral.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitRDGeometryLib.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitRDInchiLib.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitRDStreams.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitRGroupDecomposition.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitReducedGraphs.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitSLNParse.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitScaffoldNetwork.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitShapeHelpers.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitSimDivPickers.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitSmilesParse.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitSubgraphs.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitSubstructLibrary.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitSubstructMatch.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitTautomerQuery.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitTrajectory.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKitga.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) libRDKithc.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) librdkitCatch.so.1.2023.03.2-2023.03.2-1.fc38.x86_64.debug()(64bit) rdkit-debuginfo = 2023.03.2-1.fc38 rdkit-debuginfo(x86-64) = 2023.03.2-1.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: rdkit-debugsource(x86-64) = 2023.03.2-1.fc38 Processing files: python3-rdkit-debuginfo-2023.03.2-1.fc38.x86_64 Provides: debuginfo(build-id) = 00937cca6a61a4c5f000291346ca26e9d67c55a0 debuginfo(build-id) = 03a756dea22fa8791e0800352981b5db4e6702e6 debuginfo(build-id) = 0428f3634ee8e218460d7004df5a99e816c0ee4a debuginfo(build-id) = 08d4f87492cfa30d0a70a1b55286d65aa709a15b debuginfo(build-id) = 157659d3b0788b1136c629ec97512499df0d699d debuginfo(build-id) = 167ad59f2eebbe98852748f13a84d39353f391d9 debuginfo(build-id) = 198be48d153edae3f7b032f80046c6509fdf73cf debuginfo(build-id) = 21d6c4a7eb61cafe4a02935f45a959e69cb04cdf debuginfo(build-id) = 24a8294b45ecd9c357f8f091e92b574205f126cd debuginfo(build-id) = 258ed4816f333e434e4939e25f2d3109aec060de debuginfo(build-id) = 28aae3c7393e70a38907fa5218fd9d537223e621 debuginfo(build-id) = 2e8232728e4f468fb6feb7a618e7f0a21cf496b8 debuginfo(build-id) = 3460f36682984145a8b19752c1caa1264eda28e9 debuginfo(build-id) = 3c77f124fa500c881302ec37be29471cef06fda3 debuginfo(build-id) = 3f5bfe2566d1ae65e88fced19b861bb3f041d206 debuginfo(build-id) = 4519966ae1cf8392f92c5d699bafb004eeb1286a debuginfo(build-id) = 58f23747129a4661cb6b7a77186da6aa353cb43a debuginfo(build-id) = 61ac071efddcccf526bfd910bb661da49c3ed745 debuginfo(build-id) = 6914f00cdd5d645db9cc99c02b637a194be7c261 debuginfo(build-id) = 71ad4685dea4c6dd509ae93f21e955beaf1092aa debuginfo(build-id) = 71febf8a57e5c6d4850ffbb30b07c28937335a4a debuginfo(build-id) = 733543e9c84334cac471bd2e8d88bae7b73f842a debuginfo(build-id) = 7ef23fbe578bcdd12f0db10b907a3b240a9a7f07 debuginfo(build-id) = 7ef370a47ad5cb47ac72fc5a06ca4f2004213db0 debuginfo(build-id) = 7fdbc1be6b19ab5c41c7a95a6d72c4672488b48b debuginfo(build-id) = 81ab7f00742694a957ad2460aff2556e19081d93 debuginfo(build-id) = 88a6a1589464e1dc302039a0bef961c3192d5faf debuginfo(build-id) = 8ef323b0e92b15046663328d8fda8794b84f63c2 debuginfo(build-id) = 8f327d970f5eb0a8109f492b8b2801df7dbb6a97 debuginfo(build-id) = 980ef19e5ed122ca43f71f49568bd263770ec4ac debuginfo(build-id) = 99ae019037d9b957fcb7b59f3acd162987b2c69a debuginfo(build-id) = 9fa1517b38aaa2a77d88ce2262f6d12eab30af01 debuginfo(build-id) = a4d0ac01c6ee2bc5a8a202534a67b1e156bb6936 debuginfo(build-id) = a4ff18357521bf2e0964720fc2d009ef55e2ba7f debuginfo(build-id) = a5888c1d80fa16ae996e509114c239fa87236ee1 debuginfo(build-id) = a716f8f6388c05884b1b721061e7d7b214af77f8 debuginfo(build-id) = aeae32129fac30ecc425e44849f91cde2853fe4d debuginfo(build-id) = b8276fba59e10953c1b5b5b4c8ac994ddb6b73ce debuginfo(build-id) = bd3e036acfa5cc4232114b09ec69b171cc729698 debuginfo(build-id) = befd71fdc4ef4bde8cc343e31ac5f499808478a6 debuginfo(build-id) = c1c8c9ec50b51a7a11989f4b99ad2f0303817339 debuginfo(build-id) = c46d128b07e01f2d8975f908932c937ffb882526 debuginfo(build-id) = c7e21db87c0773afaffb31c2606942fa9ca0e36d debuginfo(build-id) = ce2ebaa12328a4989990cefbd54c9b7feec13f17 debuginfo(build-id) = d354b5f1fe14a17a42d687aee15aba7dd054572e debuginfo(build-id) = e45805ffd512f33e0eafaf602d23eb02ab12da3a debuginfo(build-id) = f8ced66551d9e50d502bc087a372db34ac316886 debuginfo(build-id) = fc14a4985bea32e86fff28b6955f27c591bc3b40 python-rdkit-debuginfo = 2023.03.2-1.fc38 python3-rdkit-debuginfo = 2023.03.2-1.fc38 python3-rdkit-debuginfo(x86-64) = 2023.03.2-1.fc38 python3.11-rdkit-debuginfo = 2023.03.2-1.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: rdkit-debugsource(x86-64) = 2023.03.2-1.fc38 Processing files: rdkit-postgresql-debuginfo-2023.03.2-1.fc38.x86_64 Provides: debuginfo(build-id) = eae9b6a5d051301cb5ed5e6d9d54bc86ca43b4d2 rdkit-postgresql-debuginfo = 2023.03.2-1.fc38 rdkit-postgresql-debuginfo(x86-64) = 2023.03.2-1.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: rdkit-debugsource(x86-64) = 2023.03.2-1.fc38 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64 Wrote: /builddir/build/RPMS/rdkit-debuginfo-2023.03.2-1.fc38.x86_64.rpm Wrote: /builddir/build/RPMS/python3-rdkit-2023.03.2-1.fc38.x86_64.rpm Wrote: /builddir/build/RPMS/rdkit-2023.03.2-1.fc38.x86_64.rpm Wrote: /builddir/build/RPMS/python3-rdkit-debuginfo-2023.03.2-1.fc38.x86_64.rpm Wrote: /builddir/build/RPMS/rdkit-postgresql-debuginfo-2023.03.2-1.fc38.x86_64.rpm Wrote: /builddir/build/RPMS/rdkit-devel-2023.03.2-1.fc38.x86_64.rpm Wrote: /builddir/build/RPMS/rdkit-postgresql-2023.03.2-1.fc38.x86_64.rpm Wrote: /builddir/build/RPMS/rdkit-doc-2023.03.2-1.fc38.noarch.rpm Wrote: /builddir/build/RPMS/rdkit-debugsource-2023.03.2-1.fc38.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.wvqc3O + umask 022 + cd /builddir/build/BUILD + cd rdkit-Release_2023_03_2 + /usr/bin/rm -rf /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc38.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.xGLf6g + umask 022 + cd /builddir/build/BUILD + rm -rf rdkit-Release_2023_03_2 rdkit-Release_2023_03_2.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild rdkit-2023.03.2-1.fc38.src.rpm Finish: build phase for rdkit-2023.03.2-1.fc38.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-38-x86_64-1688587310.077043/root/var/log/dnf.rpm.log /var/lib/mock/fedora-38-x86_64-1688587310.077043/root/var/log/dnf.librepo.log /var/lib/mock/fedora-38-x86_64-1688587310.077043/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/rdkit-2023.03.2-1.fc38.src.rpm) Config(child) 64 minutes 58 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running FedoraReview tool Running: fedora-review --no-colors --prebuilt --rpm-spec --name rdkit --mock-config /var/lib/copr-rpmbuild/results/configs/child.cfg cmd: ['fedora-review', '--no-colors', '--prebuilt', '--rpm-spec', '--name', 'rdkit', '--mock-config', '/var/lib/copr-rpmbuild/results/configs/child.cfg'] cwd: /var/lib/copr-rpmbuild/results rc: 0 stdout: Review template in: /var/lib/copr-rpmbuild/results/rdkit/review.txt fedora-review is automated tool, but *YOU* are responsible for manually reviewing the results and finishing the review. Do not just copy-paste the results without understanding them. stderr: INFO: Processing local files: rdkit INFO: Getting .spec and .srpm Urls from : Local files in /var/lib/copr-rpmbuild/results INFO: --> SRPM url: file:///var/lib/copr-rpmbuild/results/rdkit-2023.03.2-1.fc38.src.rpm INFO: Using review directory: /var/lib/copr-rpmbuild/results/rdkit INFO: Downloading (Source0): https://github.com/rdkit/rdkit/archive/Release_2023_03_2/rdkit-Release_2023_03_2.tar.gz INFO: Running checks and generating report INFO: Installing built package(s) INFO: Reading configuration from /etc/mock/site-defaults.cfg INFO: Reading configuration from /etc/mock/chroot-aliases.cfg INFO: Reading configuration from /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: WARNING: Probably non-rawhide buildroot used. Rawhide should be used for most package reviews INFO: Active plugins: Generic, Shell-api, Python, C/C++ Last metadata expiration check: 0:00:11 ago on Wed Jul 5 21:12:15 2023. Last metadata expiration check: 0:10:29 ago on Wed Jul 5 21:12:15 2023. Package basesystem-11-15.fc38.noarch contains no files Package glibc-minimal-langpack-2.37-1.fc38.x86_64 contains no files Package glibc-minimal-langpack-2.37-4.fc38.x86_64 contains no files Last metadata expiration check: 0:14:11 ago on Wed Jul 5 21:12:15 2023. Package basesystem-11-15.fc38.noarch contains no files Package glibc-minimal-langpack-2.37-1.fc38.x86_64 contains no files Package glibc-minimal-langpack-2.37-4.fc38.x86_64 contains no files Last metadata expiration check: 0:17:48 ago on Wed Jul 5 21:12:15 2023. Package basesystem-11-15.fc38.noarch contains no files Package glibc-minimal-langpack-2.37-1.fc38.x86_64 contains no files Package glibc-minimal-langpack-2.37-4.fc38.x86_64 contains no files Last metadata expiration check: 0:21:31 ago on Wed Jul 5 21:12:15 2023. Package basesystem-11-15.fc38.noarch contains no files Package glibc-minimal-langpack-2.37-1.fc38.x86_64 contains no files Package glibc-minimal-langpack-2.37-4.fc38.x86_64 contains no files Last metadata expiration check: 0:25:06 ago on Wed Jul 5 21:12:15 2023. Package basesystem-11-15.fc38.noarch contains no files Package glibc-minimal-langpack-2.37-1.fc38.x86_64 contains no files Package glibc-minimal-langpack-2.37-4.fc38.x86_64 contains no files Last metadata expiration check: 0:25:08 ago on Wed Jul 5 21:12:15 2023. Last metadata expiration check: 0:25:10 ago on Wed Jul 5 21:12:15 2023. INFO: ExclusiveArch dependency checking disabled, enable with EXARCH flag Review template in: /var/lib/copr-rpmbuild/results/rdkit/review.txt fedora-review is automated tool, but *YOU* are responsible for manually reviewing the results and finishing the review. Do not just copy-paste the results without understanding them. Moving the results into `fedora-review' directory. Review template in: /var/lib/copr-rpmbuild/results/fedora-review/review.txt Running RPMResults tool