Warning: Permanently added '107.23.68.255' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6144287-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64 Version: 0.68 PID: 5298 Logging PID: 5299 Task: {'appstream': False, 'background': False, 'build_id': 6144287, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-x86_64', 'enable_net': False, 'fedora_review': True, 'git_hash': 'b6a188bda17a6640a46690347422cda5de0f7058', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/@fedora-review/fedora-review-2081113-rdkit/rdkit', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'rdkit', 'package_version': '2023.03.2-1.fc39', 'project_dirname': 'fedora-review-2081113-rdkit', 'project_name': 'fedora-review-2081113-rdkit', 'project_owner': '@fedora-review', 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/@fedora-review/fedora-review-2081113-rdkit/fedora-rawhide-x86_64/', 'id': 'copr_base', 'name': 'Copr repository'}], 'sandbox': '@fedora-review/fedora-review-2081113-rdkit--frostyx', 'source_json': {}, 'source_type': None, 'submitter': 'frostyx', 'tags': [], 'task_id': '6144287-fedora-rawhide-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/@fedora-review/fedora-review-2081113-rdkit/rdkit /var/lib/copr-rpmbuild/workspace/workdir-m4cdisd6/rdkit --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/@fedora-review/fedora-review-2081113-rdkit/rdkit', '/var/lib/copr-rpmbuild/workspace/workdir-m4cdisd6/rdkit', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-m4cdisd6/rdkit'... Running: git checkout b6a188bda17a6640a46690347422cda5de0f7058 -- cmd: ['git', 'checkout', 'b6a188bda17a6640a46690347422cda5de0f7058', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-m4cdisd6/rdkit rc: 0 stdout: stderr: Note: switching to 'b6a188bda17a6640a46690347422cda5de0f7058'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at b6a188b automatic import of rdkit Running: copr-distgit-client sources /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-m4cdisd6/rdkit rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading rdkit-Release_2023_03_2.tar.gz INFO: Calling: curl -H Pragma: -o rdkit-Release_2023_03_2.tar.gz --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/@fedora-review/fedora-review-2081113-rdkit/rdkit/rdkit-Release_2023_03_2.tar.gz/md5/697b407c8a65535ae25a238e7cfcc5f0/rdkit-Release_2023_03_2.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 75.7M 100 75.7M 0 0 244M 0 --:--:-- --:--:-- --:--:-- 245M INFO: Reading stdout from command: md5sum rdkit-Release_2023_03_2.tar.gz Running (timeout=18000): unbuffer mock --buildsrpm --spec /var/lib/copr-rpmbuild/workspace/workdir-m4cdisd6/rdkit/rdkit.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-m4cdisd6/rdkit --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1688587310.274239 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 4.1 starting (python version = 3.11.3, NVR = mock-4.1-1.fc38)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-m4cdisd6/rdkit/rdkit.spec) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1688587310.274239/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 4.1 INFO: Mock Version: 4.1 INFO: Package manager dnf detected and used (fallback) Start(bootstrap): installing dnf tooling No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 1.1 kB/s | 257 B 00:00 fedora 49 MB/s | 71 MB 00:01 Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing: dnf-plugins-core noarch 4.4.1-3.fc39 fedora 38 k python3-dnf noarch 4.16.1-2.fc39 fedora 604 k Installing dependencies: alternatives x86_64 1.24-1.fc39 fedora 39 k audit-libs x86_64 3.1.1-1.fc39 fedora 117 k basesystem noarch 11-17.fc39 fedora 7.0 k bash x86_64 5.2.15-3.fc38 fedora 1.8 M bzip2-libs x86_64 1.0.8-13.fc38 fedora 41 k ca-certificates noarch 2023.2.60-2.fc38 fedora 845 k coreutils x86_64 9.3-1.fc39 fedora 1.1 M coreutils-common x86_64 9.3-1.fc39 fedora 2.1 M crypto-policies noarch 20230614-1.git5f3458e.fc39 fedora 94 k curl x86_64 8.1.2-1.fc39 fedora 345 k cyrus-sasl-lib x86_64 2.1.28-10.fc39 fedora 792 k dbus-libs x86_64 1:1.14.8-1.fc39 fedora 156 k dnf-data noarch 4.16.1-2.fc39 fedora 38 k elfutils-default-yama-scope noarch 0.189-3.fc39 fedora 13 k elfutils-libelf x86_64 0.189-3.fc39 fedora 195 k elfutils-libs x86_64 0.189-3.fc39 fedora 258 k expat x86_64 2.5.0-2.fc38 fedora 110 k fedora-gpg-keys noarch 39-0.1 fedora 126 k fedora-release noarch 39-0.14 fedora 6.6 k fedora-release-common noarch 39-0.14 fedora 17 k fedora-release-identity-basic noarch 39-0.14 fedora 7.4 k fedora-repos noarch 39-0.1 fedora 9.4 k fedora-repos-rawhide noarch 39-0.1 fedora 9.0 k file-libs x86_64 5.44-3.fc39 fedora 730 k filesystem x86_64 3.18-4.fc39 fedora 1.1 M findutils x86_64 1:4.9.0-4.fc39 fedora 491 k fmt x86_64 10.0.0-2.fc39 fedora 127 k gawk x86_64 5.2.2-1.fc39 fedora 1.1 M gdbm-libs x86_64 1:1.23-3.fc38 fedora 56 k glib2 x86_64 2.76.3-1.fc39 fedora 2.8 M glibc x86_64 2.37.9000-15.fc39 fedora 2.1 M glibc-common x86_64 2.37.9000-15.fc39 fedora 339 k glibc-minimal-langpack x86_64 2.37.9000-15.fc39 fedora 61 k gmp x86_64 1:6.2.1-4.fc38 fedora 313 k gnupg2 x86_64 2.4.2-2.fc39 fedora 2.6 M gnutls x86_64 3.8.0-6.fc39 fedora 1.1 M gpgme x86_64 1.20.0-3.fc39 fedora 210 k grep x86_64 3.11-1.fc39 fedora 298 k ima-evm-utils x86_64 1.5-1.fc39 fedora 63 k json-c x86_64 0.16-4.fc38 fedora 41 k keyutils-libs x86_64 1.6.1-6.fc38 fedora 31 k krb5-libs x86_64 1.21-1.fc39 fedora 765 k libacl x86_64 2.3.1-7.fc39 fedora 23 k libarchive x86_64 3.6.1-5.fc39 fedora 400 k libassuan x86_64 2.5.6-1.fc39 fedora 67 k libattr x86_64 2.5.1-7.fc39 fedora 18 k libb2 x86_64 0.98.1-8.fc38 fedora 25 k libblkid x86_64 2.39.1-1.fc39 fedora 116 k libbrotli x86_64 1.0.9-11.fc38 fedora 317 k libcap x86_64 2.48-6.fc38 fedora 67 k libcap-ng x86_64 0.8.3-5.fc38 fedora 32 k libcom_err x86_64 1.47.0-1.fc39 fedora 26 k libcomps x86_64 0.1.19-1.fc39 fedora 77 k libcurl x86_64 8.1.2-1.fc39 fedora 323 k libdnf x86_64 0.70.1-3.fc39 fedora 667 k libdnf5 x86_64 5.0.15-2.fc39 fedora 877 k libeconf x86_64 0.4.0-5.fc38 fedora 27 k libevent x86_64 2.1.12-8.fc38 fedora 257 k libffi x86_64 3.4.4-2.fc38 fedora 38 k libfsverity x86_64 1.4-9.fc38 fedora 19 k libgcc x86_64 13.1.1-4.fc39 fedora 107 k libgcrypt x86_64 1.10.2-1.fc39 fedora 514 k libgomp x86_64 13.1.1-4.fc39 fedora 317 k libgpg-error x86_64 1.47-1.fc39 fedora 230 k libidn2 x86_64 2.3.4-2.fc38 fedora 160 k libksba x86_64 1.6.4-1.fc39 fedora 159 k libmodulemd x86_64 2.15.0-3.fc39 fedora 232 k libmount x86_64 2.39.1-1.fc39 fedora 155 k libnghttp2 x86_64 1.54.0-1.fc39 fedora 75 k libnsl2 x86_64 2.0.0-5.fc38 fedora 30 k libpsl x86_64 0.21.2-3.fc39 fedora 63 k librepo x86_64 1.15.1-2.fc38 fedora 96 k libreport-filesystem noarch 2.17.11-1.fc39 fedora 14 k libselinux x86_64 3.5-1.fc39 fedora 87 k libsemanage x86_64 3.5-2.fc39 fedora 120 k libsepol x86_64 3.5-1.fc39 fedora 324 k libsigsegv x86_64 2.14-4.fc38 fedora 27 k libsmartcols x86_64 2.39.1-1.fc39 fedora 67 k libsolv x86_64 0.7.24-4.fc39 fedora 425 k libssh x86_64 0.10.5-1.fc39 fedora 211 k libssh-config noarch 0.10.5-1.fc39 fedora 9.0 k libstdc++ x86_64 13.1.1-4.fc39 fedora 861 k libtasn1 x86_64 4.19.0-2.fc38 fedora 74 k libtirpc x86_64 1.3.3-1.rc1.fc39 fedora 93 k libunistring x86_64 1.1-3.fc38 fedora 545 k libunistring1.0 x86_64 1.0-1.fc38 fedora 539 k libuuid x86_64 2.39.1-1.fc39 fedora 28 k libverto x86_64 0.3.2-5.fc38 fedora 21 k libxcrypt x86_64 4.4.35-1.fc39 fedora 119 k libxml2 x86_64 2.10.4-1.fc39 fedora 700 k libyaml x86_64 0.2.5-9.fc38 fedora 59 k libzstd x86_64 1.5.5-1.fc39 fedora 308 k lua-libs x86_64 5.4.4-9.fc39 fedora 133 k lz4-libs x86_64 1.9.4-3.fc39 fedora 67 k mpdecimal x86_64 2.5.1-6.fc38 fedora 89 k mpfr x86_64 4.1.1-3.fc38 fedora 600 k ncurses-base noarch 6.4-5.20230520.fc39 fedora 88 k ncurses-libs x86_64 6.4-5.20230520.fc39 fedora 336 k nettle x86_64 3.9.1-1.fc39 fedora 425 k npth x86_64 1.6-13.fc39 fedora 24 k openldap x86_64 2.6.4-2.fc39 fedora 255 k openssl-libs x86_64 1:3.0.8-2.fc39 fedora 2.1 M p11-kit x86_64 0.24.1-6.fc38 fedora 359 k p11-kit-trust x86_64 0.24.1-6.fc38 fedora 136 k pcre2 x86_64 10.42-1.fc38.1 fedora 234 k pcre2-syntax noarch 10.42-1.fc38.1 fedora 144 k popt x86_64 1.19-2.fc38 fedora 67 k publicsuffix-list-dafsa noarch 20230614-1.fc39 fedora 57 k python-pip-wheel noarch 23.1.2-1.fc39 fedora 1.4 M python-setuptools-wheel noarch 67.7.2-2.fc39 fedora 661 k python3 x86_64 3.11.4-1.fc39 fedora 28 k python3-dateutil noarch 1:2.8.2-6.fc39 fedora 360 k python3-dbus x86_64 1.3.2-2.fc38 fedora 157 k python3-distro noarch 1.8.0-4.fc39 fedora 49 k python3-dnf-plugins-core noarch 4.4.1-3.fc39 fedora 299 k python3-gpg x86_64 1.20.0-3.fc39 fedora 297 k python3-hawkey x86_64 0.70.1-3.fc39 fedora 107 k python3-libcomps x86_64 0.1.19-1.fc39 fedora 47 k python3-libdnf x86_64 0.70.1-3.fc39 fedora 826 k python3-libs x86_64 3.11.4-1.fc39 fedora 9.6 M python3-rpm x86_64 4.18.91-6.fc39 fedora 67 k python3-six noarch 1.16.0-9.fc38 fedora 42 k python3-systemd x86_64 235-2.fc38 fedora 108 k readline x86_64 8.2-3.fc38 fedora 212 k rpm x86_64 4.18.91-6.fc39 fedora 529 k rpm-build-libs x86_64 4.18.91-6.fc39 fedora 95 k rpm-libs x86_64 4.18.91-6.fc39 fedora 309 k rpm-sequoia x86_64 1.4.1-1.fc39 fedora 843 k rpm-sign-libs x86_64 4.18.91-6.fc39 fedora 26 k sed x86_64 4.8-12.fc38 fedora 306 k setup noarch 2.14.3-3.fc39 fedora 152 k shadow-utils x86_64 2:4.13-7.fc39 fedora 1.3 M sqlite-libs x86_64 3.41.2-3.fc39 fedora 669 k systemd-libs x86_64 253.5-6.fc39 fedora 652 k tpm2-tss x86_64 4.0.1-3.fc38 fedora 675 k tzdata noarch 2023c-1.fc39 fedora 718 k xz-libs x86_64 5.4.3-1.fc39 fedora 108 k zchunk-libs x86_64 1.3.1-1.fc39 fedora 52 k zlib x86_64 1.2.13-3.fc38 fedora 95 k Transaction Summary ================================================================================ Install 141 Packages Total download size: 59 M Installed size: 205 M Downloading Packages: (1/141): basesystem-11-17.fc39.noarch.rpm 272 kB/s | 7.0 kB 00:00 (2/141): audit-libs-3.1.1-1.fc39.x86_64.rpm 3.8 MB/s | 117 kB 00:00 (3/141): alternatives-1.24-1.fc39.x86_64.rpm 1.2 MB/s | 39 kB 00:00 (4/141): bzip2-libs-1.0.8-13.fc38.x86_64.rpm 8.0 MB/s | 41 kB 00:00 (5/141): bash-5.2.15-3.fc38.x86_64.rpm 166 MB/s | 1.8 MB 00:00 (6/141): ca-certificates-2023.2.60-2.fc38.noarc 70 MB/s | 845 kB 00:00 (7/141): coreutils-9.3-1.fc39.x86_64.rpm 133 MB/s | 1.1 MB 00:00 (8/141): coreutils-common-9.3-1.fc39.x86_64.rpm 229 MB/s | 2.1 MB 00:00 (9/141): crypto-policies-20230614-1.git5f3458e. 20 MB/s | 94 kB 00:00 (10/141): curl-8.1.2-1.fc39.x86_64.rpm 66 MB/s | 345 kB 00:00 (11/141): dnf-data-4.16.1-2.fc39.noarch.rpm 8.8 MB/s | 38 kB 00:00 (12/141): dbus-libs-1.14.8-1.fc39.x86_64.rpm 24 MB/s | 156 kB 00:00 (13/141): cyrus-sasl-lib-2.1.28-10.fc39.x86_64. 82 MB/s | 792 kB 00:00 (14/141): elfutils-default-yama-scope-0.189-3.f 6.6 MB/s | 13 kB 00:00 (15/141): dnf-plugins-core-4.4.1-3.fc39.noarch. 12 MB/s | 38 kB 00:00 (16/141): elfutils-libs-0.189-3.fc39.x86_64.rpm 93 MB/s | 258 kB 00:00 (17/141): expat-2.5.0-2.fc38.x86_64.rpm 36 MB/s | 110 kB 00:00 (18/141): elfutils-libelf-0.189-3.fc39.x86_64.r 36 MB/s | 195 kB 00:00 (19/141): fedora-release-39-0.14.noarch.rpm 3.9 MB/s | 6.6 kB 00:00 (20/141): fedora-release-common-39-0.14.noarch. 9.0 MB/s | 17 kB 00:00 (21/141): fedora-repos-39-0.1.noarch.rpm 8.6 MB/s | 9.4 kB 00:00 (22/141): fedora-gpg-keys-39-0.1.noarch.rpm 23 MB/s | 126 kB 00:00 (23/141): fedora-release-identity-basic-39-0.14 2.6 MB/s | 7.4 kB 00:00 (24/141): fedora-repos-rawhide-39-0.1.noarch.rp 7.0 MB/s | 9.0 kB 00:00 (25/141): findutils-4.9.0-4.fc39.x86_64.rpm 96 MB/s | 491 kB 00:00 (26/141): file-libs-5.44-3.fc39.x86_64.rpm 87 MB/s | 730 kB 00:00 (27/141): filesystem-3.18-4.fc39.x86_64.rpm 119 MB/s | 1.1 MB 00:00 (28/141): fmt-10.0.0-2.fc39.x86_64.rpm 38 MB/s | 127 kB 00:00 (29/141): gdbm-libs-1.23-3.fc38.x86_64.rpm 30 MB/s | 56 kB 00:00 (30/141): gawk-5.2.2-1.fc39.x86_64.rpm 111 MB/s | 1.1 MB 00:00 (31/141): glib2-2.76.3-1.fc39.x86_64.rpm 156 MB/s | 2.8 MB 00:00 (32/141): glibc-2.37.9000-15.fc39.x86_64.rpm 111 MB/s | 2.1 MB 00:00 (33/141): glibc-common-2.37.9000-15.fc39.x86_64 35 MB/s | 339 kB 00:00 (34/141): glibc-minimal-langpack-2.37.9000-15.f 37 MB/s | 61 kB 00:00 (35/141): gmp-6.2.1-4.fc38.x86_64.rpm 91 MB/s | 313 kB 00:00 (36/141): gpgme-1.20.0-3.fc39.x86_64.rpm 39 MB/s | 210 kB 00:00 (37/141): gnupg2-2.4.2-2.fc39.x86_64.rpm 148 MB/s | 2.6 MB 00:00 (38/141): gnutls-3.8.0-6.fc39.x86_64.rpm 58 MB/s | 1.1 MB 00:00 (39/141): grep-3.11-1.fc39.x86_64.rpm 24 MB/s | 298 kB 00:00 (40/141): ima-evm-utils-1.5-1.fc39.x86_64.rpm 21 MB/s | 63 kB 00:00 (41/141): json-c-0.16-4.fc38.x86_64.rpm 13 MB/s | 41 kB 00:00 (42/141): keyutils-libs-1.6.1-6.fc38.x86_64.rpm 13 MB/s | 31 kB 00:00 (43/141): krb5-libs-1.21-1.fc39.x86_64.rpm 112 MB/s | 765 kB 00:00 (44/141): libarchive-3.6.1-5.fc39.x86_64.rpm 74 MB/s | 400 kB 00:00 (45/141): libacl-2.3.1-7.fc39.x86_64.rpm 3.1 MB/s | 23 kB 00:00 (46/141): libassuan-2.5.6-1.fc39.x86_64.rpm 25 MB/s | 67 kB 00:00 (47/141): libattr-2.5.1-7.fc39.x86_64.rpm 7.4 MB/s | 18 kB 00:00 (48/141): libb2-0.98.1-8.fc38.x86_64.rpm 14 MB/s | 25 kB 00:00 (49/141): libbrotli-1.0.9-11.fc38.x86_64.rpm 100 MB/s | 317 kB 00:00 (50/141): libblkid-2.39.1-1.fc39.x86_64.rpm 26 MB/s | 116 kB 00:00 (51/141): libcap-2.48-6.fc38.x86_64.rpm 21 MB/s | 67 kB 00:00 (52/141): libcap-ng-0.8.3-5.fc38.x86_64.rpm 24 MB/s | 32 kB 00:00 (53/141): libcom_err-1.47.0-1.fc39.x86_64.rpm 13 MB/s | 26 kB 00:00 (54/141): libcurl-8.1.2-1.fc39.x86_64.rpm 104 MB/s | 323 kB 00:00 (55/141): libcomps-0.1.19-1.fc39.x86_64.rpm 17 MB/s | 77 kB 00:00 (56/141): libdnf5-5.0.15-2.fc39.x86_64.rpm 138 MB/s | 877 kB 00:00 (57/141): libdnf-0.70.1-3.fc39.x86_64.rpm 68 MB/s | 667 kB 00:00 (58/141): libeconf-0.4.0-5.fc38.x86_64.rpm 3.7 MB/s | 27 kB 00:00 (59/141): libevent-2.1.12-8.fc38.x86_64.rpm 84 MB/s | 257 kB 00:00 (60/141): libffi-3.4.4-2.fc38.x86_64.rpm 13 MB/s | 38 kB 00:00 (61/141): libfsverity-1.4-9.fc38.x86_64.rpm 3.8 MB/s | 19 kB 00:00 (62/141): libgcc-13.1.1-4.fc39.x86_64.rpm 21 MB/s | 107 kB 00:00 (63/141): libgcrypt-1.10.2-1.fc39.x86_64.rpm 92 MB/s | 514 kB 00:00 (64/141): libgomp-13.1.1-4.fc39.x86_64.rpm 71 MB/s | 317 kB 00:00 (65/141): libgpg-error-1.47-1.fc39.x86_64.rpm 75 MB/s | 230 kB 00:00 (66/141): libidn2-2.3.4-2.fc38.x86_64.rpm 64 MB/s | 160 kB 00:00 (67/141): libksba-1.6.4-1.fc39.x86_64.rpm 62 MB/s | 159 kB 00:00 (68/141): libmodulemd-2.15.0-3.fc39.x86_64.rpm 75 MB/s | 232 kB 00:00 (69/141): libmount-2.39.1-1.fc39.x86_64.rpm 50 MB/s | 155 kB 00:00 (70/141): libnghttp2-1.54.0-1.fc39.x86_64.rpm 26 MB/s | 75 kB 00:00 (71/141): libnsl2-2.0.0-5.fc38.x86_64.rpm 15 MB/s | 30 kB 00:00 (72/141): libpsl-0.21.2-3.fc39.x86_64.rpm 32 MB/s | 63 kB 00:00 (73/141): librepo-1.15.1-2.fc38.x86_64.rpm 46 MB/s | 96 kB 00:00 (74/141): libreport-filesystem-2.17.11-1.fc39.n 9.0 MB/s | 14 kB 00:00 (75/141): libselinux-3.5-1.fc39.x86_64.rpm 51 MB/s | 87 kB 00:00 (76/141): libsemanage-3.5-2.fc39.x86_64.rpm 50 MB/s | 120 kB 00:00 (77/141): libsepol-3.5-1.fc39.x86_64.rpm 97 MB/s | 324 kB 00:00 (78/141): libsigsegv-2.14-4.fc38.x86_64.rpm 9.0 MB/s | 27 kB 00:00 (79/141): 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tzdata-2023c-1.fc39.noarch.rpm 110 MB/s | 718 kB 00:00 (138/141): xz-libs-5.4.3-1.fc39.x86_64.rpm 19 MB/s | 108 kB 00:00 (139/141): tpm2-tss-4.0.1-3.fc38.x86_64.rpm 65 MB/s | 675 kB 00:00 (140/141): zchunk-libs-1.3.1-1.fc39.x86_64.rpm 24 MB/s | 52 kB 00:00 (141/141): zlib-1.2.13-3.fc38.x86_64.rpm 46 MB/s | 95 kB 00:00 -------------------------------------------------------------------------------- Total 148 MB/s | 59 MB 00:00 fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x18B8E74C: Userid : "Fedora (39) " Fingerprint: E8F2 3996 F232 1864 0CB4 4CBE 75CF 5AC4 18B8 E74C From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-39-primary Key imported successfully fedora 1.6 MB/s | 1.6 kB 00:00 GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-39-primary (0x18B8E74C) is already installed fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0xEB10B464: Userid : "Fedora (38) " Fingerprint: 6A51 BBAB BA3D 5467 B617 1221 809A 8D7C EB10 B464 From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-4.fc39.x86_64 1/1 Preparing : 1/1 Installing : libgcc-13.1.1-4.fc39.x86_64 1/141 Running scriptlet: libgcc-13.1.1-4.fc39.x86_64 1/141 Installing : tzdata-2023c-1.fc39.noarch 2/141 Installing : crypto-policies-20230614-1.git5f3458e.fc39.noarc 3/141 Running scriptlet: crypto-policies-20230614-1.git5f3458e.fc39.noarc 3/141 Installing : fedora-release-identity-basic-39-0.14.noarch 4/141 Installing : python-setuptools-wheel-67.7.2-2.fc39.noarch 5/141 Installing : publicsuffix-list-dafsa-20230614-1.fc39.noarch 6/141 Installing : pcre2-syntax-10.42-1.fc38.1.noarch 7/141 Installing : ncurses-base-6.4-5.20230520.fc39.noarch 8/141 Installing : libssh-config-0.10.5-1.fc39.noarch 9/141 Installing : libreport-filesystem-2.17.11-1.fc39.noarch 10/141 Installing : fedora-gpg-keys-39-0.1.noarch 11/141 Installing : fedora-release-39-0.14.noarch 12/141 Installing : fedora-release-common-39-0.14.noarch 13/141 Installing : 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python3-rpm-4.18.91-6.fc39.x86_64 137/141 Installing : python3-dnf-4.16.1-2.fc39.noarch 138/141 Installing : python3-dnf-plugins-core-4.4.1-3.fc39.noarch 139/141 Installing : dnf-plugins-core-4.4.1-3.fc39.noarch 140/141 Running scriptlet: rpm-4.18.91-6.fc39.x86_64 141/141 Installing : rpm-4.18.91-6.fc39.x86_64 141/141 Running scriptlet: filesystem-3.18-4.fc39.x86_64 141/141 Running scriptlet: ca-certificates-2023.2.60-2.fc38.noarch 141/141 Running scriptlet: rpm-4.18.91-6.fc39.x86_64 141/141 Verifying : alternatives-1.24-1.fc39.x86_64 1/141 Verifying : audit-libs-3.1.1-1.fc39.x86_64 2/141 Verifying : basesystem-11-17.fc39.noarch 3/141 Verifying : bash-5.2.15-3.fc38.x86_64 4/141 Verifying : bzip2-libs-1.0.8-13.fc38.x86_64 5/141 Verifying : ca-certificates-2023.2.60-2.fc38.noarch 6/141 Verifying : coreutils-9.3-1.fc39.x86_64 7/141 Verifying : coreutils-common-9.3-1.fc39.x86_64 8/141 Verifying : crypto-policies-20230614-1.git5f3458e.fc39.noarc 9/141 Verifying : curl-8.1.2-1.fc39.x86_64 10/141 Verifying : cyrus-sasl-lib-2.1.28-10.fc39.x86_64 11/141 Verifying : dbus-libs-1:1.14.8-1.fc39.x86_64 12/141 Verifying : dnf-data-4.16.1-2.fc39.noarch 13/141 Verifying : dnf-plugins-core-4.4.1-3.fc39.noarch 14/141 Verifying : elfutils-default-yama-scope-0.189-3.fc39.noarch 15/141 Verifying : elfutils-libelf-0.189-3.fc39.x86_64 16/141 Verifying : elfutils-libs-0.189-3.fc39.x86_64 17/141 Verifying : expat-2.5.0-2.fc38.x86_64 18/141 Verifying : fedora-gpg-keys-39-0.1.noarch 19/141 Verifying : fedora-release-39-0.14.noarch 20/141 Verifying : fedora-release-common-39-0.14.noarch 21/141 Verifying : fedora-release-identity-basic-39-0.14.noarch 22/141 Verifying : fedora-repos-39-0.1.noarch 23/141 Verifying : fedora-repos-rawhide-39-0.1.noarch 24/141 Verifying : file-libs-5.44-3.fc39.x86_64 25/141 Verifying : filesystem-3.18-4.fc39.x86_64 26/141 Verifying : findutils-1:4.9.0-4.fc39.x86_64 27/141 Verifying : fmt-10.0.0-2.fc39.x86_64 28/141 Verifying : gawk-5.2.2-1.fc39.x86_64 29/141 Verifying : gdbm-libs-1:1.23-3.fc38.x86_64 30/141 Verifying : glib2-2.76.3-1.fc39.x86_64 31/141 Verifying : glibc-2.37.9000-15.fc39.x86_64 32/141 Verifying : glibc-common-2.37.9000-15.fc39.x86_64 33/141 Verifying : glibc-minimal-langpack-2.37.9000-15.fc39.x86_64 34/141 Verifying : gmp-1:6.2.1-4.fc38.x86_64 35/141 Verifying : gnupg2-2.4.2-2.fc39.x86_64 36/141 Verifying : gnutls-3.8.0-6.fc39.x86_64 37/141 Verifying : gpgme-1.20.0-3.fc39.x86_64 38/141 Verifying : grep-3.11-1.fc39.x86_64 39/141 Verifying : ima-evm-utils-1.5-1.fc39.x86_64 40/141 Verifying : json-c-0.16-4.fc38.x86_64 41/141 Verifying : keyutils-libs-1.6.1-6.fc38.x86_64 42/141 Verifying : krb5-libs-1.21-1.fc39.x86_64 43/141 Verifying : libacl-2.3.1-7.fc39.x86_64 44/141 Verifying : libarchive-3.6.1-5.fc39.x86_64 45/141 Verifying : libassuan-2.5.6-1.fc39.x86_64 46/141 Verifying : libattr-2.5.1-7.fc39.x86_64 47/141 Verifying : libb2-0.98.1-8.fc38.x86_64 48/141 Verifying : libblkid-2.39.1-1.fc39.x86_64 49/141 Verifying : libbrotli-1.0.9-11.fc38.x86_64 50/141 Verifying : libcap-2.48-6.fc38.x86_64 51/141 Verifying : libcap-ng-0.8.3-5.fc38.x86_64 52/141 Verifying : libcom_err-1.47.0-1.fc39.x86_64 53/141 Verifying : libcomps-0.1.19-1.fc39.x86_64 54/141 Verifying : libcurl-8.1.2-1.fc39.x86_64 55/141 Verifying : libdnf-0.70.1-3.fc39.x86_64 56/141 Verifying : libdnf5-5.0.15-2.fc39.x86_64 57/141 Verifying : libeconf-0.4.0-5.fc38.x86_64 58/141 Verifying : libevent-2.1.12-8.fc38.x86_64 59/141 Verifying : libffi-3.4.4-2.fc38.x86_64 60/141 Verifying : libfsverity-1.4-9.fc38.x86_64 61/141 Verifying : libgcc-13.1.1-4.fc39.x86_64 62/141 Verifying : libgcrypt-1.10.2-1.fc39.x86_64 63/141 Verifying : libgomp-13.1.1-4.fc39.x86_64 64/141 Verifying : libgpg-error-1.47-1.fc39.x86_64 65/141 Verifying : libidn2-2.3.4-2.fc38.x86_64 66/141 Verifying : libksba-1.6.4-1.fc39.x86_64 67/141 Verifying : libmodulemd-2.15.0-3.fc39.x86_64 68/141 Verifying : libmount-2.39.1-1.fc39.x86_64 69/141 Verifying : libnghttp2-1.54.0-1.fc39.x86_64 70/141 Verifying : libnsl2-2.0.0-5.fc38.x86_64 71/141 Verifying : libpsl-0.21.2-3.fc39.x86_64 72/141 Verifying : librepo-1.15.1-2.fc38.x86_64 73/141 Verifying : libreport-filesystem-2.17.11-1.fc39.noarch 74/141 Verifying : libselinux-3.5-1.fc39.x86_64 75/141 Verifying : libsemanage-3.5-2.fc39.x86_64 76/141 Verifying : libsepol-3.5-1.fc39.x86_64 77/141 Verifying : libsigsegv-2.14-4.fc38.x86_64 78/141 Verifying : libsmartcols-2.39.1-1.fc39.x86_64 79/141 Verifying : libsolv-0.7.24-4.fc39.x86_64 80/141 Verifying : libssh-0.10.5-1.fc39.x86_64 81/141 Verifying : libssh-config-0.10.5-1.fc39.noarch 82/141 Verifying : libstdc++-13.1.1-4.fc39.x86_64 83/141 Verifying : libtasn1-4.19.0-2.fc38.x86_64 84/141 Verifying : libtirpc-1.3.3-1.rc1.fc39.x86_64 85/141 Verifying : libunistring-1.1-3.fc38.x86_64 86/141 Verifying : libunistring1.0-1.0-1.fc38.x86_64 87/141 Verifying : libuuid-2.39.1-1.fc39.x86_64 88/141 Verifying : libverto-0.3.2-5.fc38.x86_64 89/141 Verifying : libxcrypt-4.4.35-1.fc39.x86_64 90/141 Verifying : libxml2-2.10.4-1.fc39.x86_64 91/141 Verifying : libyaml-0.2.5-9.fc38.x86_64 92/141 Verifying : libzstd-1.5.5-1.fc39.x86_64 93/141 Verifying : lua-libs-5.4.4-9.fc39.x86_64 94/141 Verifying : lz4-libs-1.9.4-3.fc39.x86_64 95/141 Verifying : mpdecimal-2.5.1-6.fc38.x86_64 96/141 Verifying : mpfr-4.1.1-3.fc38.x86_64 97/141 Verifying : ncurses-base-6.4-5.20230520.fc39.noarch 98/141 Verifying : ncurses-libs-6.4-5.20230520.fc39.x86_64 99/141 Verifying : nettle-3.9.1-1.fc39.x86_64 100/141 Verifying : npth-1.6-13.fc39.x86_64 101/141 Verifying : openldap-2.6.4-2.fc39.x86_64 102/141 Verifying : openssl-libs-1:3.0.8-2.fc39.x86_64 103/141 Verifying : p11-kit-0.24.1-6.fc38.x86_64 104/141 Verifying : p11-kit-trust-0.24.1-6.fc38.x86_64 105/141 Verifying : pcre2-10.42-1.fc38.1.x86_64 106/141 Verifying : pcre2-syntax-10.42-1.fc38.1.noarch 107/141 Verifying : popt-1.19-2.fc38.x86_64 108/141 Verifying : publicsuffix-list-dafsa-20230614-1.fc39.noarch 109/141 Verifying : python-pip-wheel-23.1.2-1.fc39.noarch 110/141 Verifying : python-setuptools-wheel-67.7.2-2.fc39.noarch 111/141 Verifying : python3-3.11.4-1.fc39.x86_64 112/141 Verifying : python3-dateutil-1:2.8.2-6.fc39.noarch 113/141 Verifying : python3-dbus-1.3.2-2.fc38.x86_64 114/141 Verifying : python3-distro-1.8.0-4.fc39.noarch 115/141 Verifying : python3-dnf-4.16.1-2.fc39.noarch 116/141 Verifying : python3-dnf-plugins-core-4.4.1-3.fc39.noarch 117/141 Verifying : python3-gpg-1.20.0-3.fc39.x86_64 118/141 Verifying : python3-hawkey-0.70.1-3.fc39.x86_64 119/141 Verifying : python3-libcomps-0.1.19-1.fc39.x86_64 120/141 Verifying : python3-libdnf-0.70.1-3.fc39.x86_64 121/141 Verifying : python3-libs-3.11.4-1.fc39.x86_64 122/141 Verifying : python3-rpm-4.18.91-6.fc39.x86_64 123/141 Verifying : python3-six-1.16.0-9.fc38.noarch 124/141 Verifying : python3-systemd-235-2.fc38.x86_64 125/141 Verifying : readline-8.2-3.fc38.x86_64 126/141 Verifying : rpm-4.18.91-6.fc39.x86_64 127/141 Verifying : rpm-build-libs-4.18.91-6.fc39.x86_64 128/141 Verifying : rpm-libs-4.18.91-6.fc39.x86_64 129/141 Verifying : rpm-sequoia-1.4.1-1.fc39.x86_64 130/141 Verifying : rpm-sign-libs-4.18.91-6.fc39.x86_64 131/141 Verifying : sed-4.8-12.fc38.x86_64 132/141 Verifying : setup-2.14.3-3.fc39.noarch 133/141 Verifying : shadow-utils-2:4.13-7.fc39.x86_64 134/141 Verifying : sqlite-libs-3.41.2-3.fc39.x86_64 135/141 Verifying : systemd-libs-253.5-6.fc39.x86_64 136/141 Verifying : tpm2-tss-4.0.1-3.fc38.x86_64 137/141 Verifying : tzdata-2023c-1.fc39.noarch 138/141 Verifying : xz-libs-5.4.3-1.fc39.x86_64 139/141 Verifying : zchunk-libs-1.3.1-1.fc39.x86_64 140/141 Verifying : zlib-1.2.13-3.fc38.x86_64 141/141 Installed products updated. Installed: alternatives-1.24-1.fc39.x86_64 audit-libs-3.1.1-1.fc39.x86_64 basesystem-11-17.fc39.noarch bash-5.2.15-3.fc38.x86_64 bzip2-libs-1.0.8-13.fc38.x86_64 ca-certificates-2023.2.60-2.fc38.noarch coreutils-9.3-1.fc39.x86_64 coreutils-common-9.3-1.fc39.x86_64 crypto-policies-20230614-1.git5f3458e.fc39.noarch curl-8.1.2-1.fc39.x86_64 cyrus-sasl-lib-2.1.28-10.fc39.x86_64 dbus-libs-1:1.14.8-1.fc39.x86_64 dnf-data-4.16.1-2.fc39.noarch dnf-plugins-core-4.4.1-3.fc39.noarch elfutils-default-yama-scope-0.189-3.fc39.noarch elfutils-libelf-0.189-3.fc39.x86_64 elfutils-libs-0.189-3.fc39.x86_64 expat-2.5.0-2.fc38.x86_64 fedora-gpg-keys-39-0.1.noarch fedora-release-39-0.14.noarch fedora-release-common-39-0.14.noarch fedora-release-identity-basic-39-0.14.noarch fedora-repos-39-0.1.noarch fedora-repos-rawhide-39-0.1.noarch file-libs-5.44-3.fc39.x86_64 filesystem-3.18-4.fc39.x86_64 findutils-1:4.9.0-4.fc39.x86_64 fmt-10.0.0-2.fc39.x86_64 gawk-5.2.2-1.fc39.x86_64 gdbm-libs-1:1.23-3.fc38.x86_64 glib2-2.76.3-1.fc39.x86_64 glibc-2.37.9000-15.fc39.x86_64 glibc-common-2.37.9000-15.fc39.x86_64 glibc-minimal-langpack-2.37.9000-15.fc39.x86_64 gmp-1:6.2.1-4.fc38.x86_64 gnupg2-2.4.2-2.fc39.x86_64 gnutls-3.8.0-6.fc39.x86_64 gpgme-1.20.0-3.fc39.x86_64 grep-3.11-1.fc39.x86_64 ima-evm-utils-1.5-1.fc39.x86_64 json-c-0.16-4.fc38.x86_64 keyutils-libs-1.6.1-6.fc38.x86_64 krb5-libs-1.21-1.fc39.x86_64 libacl-2.3.1-7.fc39.x86_64 libarchive-3.6.1-5.fc39.x86_64 libassuan-2.5.6-1.fc39.x86_64 libattr-2.5.1-7.fc39.x86_64 libb2-0.98.1-8.fc38.x86_64 libblkid-2.39.1-1.fc39.x86_64 libbrotli-1.0.9-11.fc38.x86_64 libcap-2.48-6.fc38.x86_64 libcap-ng-0.8.3-5.fc38.x86_64 libcom_err-1.47.0-1.fc39.x86_64 libcomps-0.1.19-1.fc39.x86_64 libcurl-8.1.2-1.fc39.x86_64 libdnf-0.70.1-3.fc39.x86_64 libdnf5-5.0.15-2.fc39.x86_64 libeconf-0.4.0-5.fc38.x86_64 libevent-2.1.12-8.fc38.x86_64 libffi-3.4.4-2.fc38.x86_64 libfsverity-1.4-9.fc38.x86_64 libgcc-13.1.1-4.fc39.x86_64 libgcrypt-1.10.2-1.fc39.x86_64 libgomp-13.1.1-4.fc39.x86_64 libgpg-error-1.47-1.fc39.x86_64 libidn2-2.3.4-2.fc38.x86_64 libksba-1.6.4-1.fc39.x86_64 libmodulemd-2.15.0-3.fc39.x86_64 libmount-2.39.1-1.fc39.x86_64 libnghttp2-1.54.0-1.fc39.x86_64 libnsl2-2.0.0-5.fc38.x86_64 libpsl-0.21.2-3.fc39.x86_64 librepo-1.15.1-2.fc38.x86_64 libreport-filesystem-2.17.11-1.fc39.noarch libselinux-3.5-1.fc39.x86_64 libsemanage-3.5-2.fc39.x86_64 libsepol-3.5-1.fc39.x86_64 libsigsegv-2.14-4.fc38.x86_64 libsmartcols-2.39.1-1.fc39.x86_64 libsolv-0.7.24-4.fc39.x86_64 libssh-0.10.5-1.fc39.x86_64 libssh-config-0.10.5-1.fc39.noarch libstdc++-13.1.1-4.fc39.x86_64 libtasn1-4.19.0-2.fc38.x86_64 libtirpc-1.3.3-1.rc1.fc39.x86_64 libunistring-1.1-3.fc38.x86_64 libunistring1.0-1.0-1.fc38.x86_64 libuuid-2.39.1-1.fc39.x86_64 libverto-0.3.2-5.fc38.x86_64 libxcrypt-4.4.35-1.fc39.x86_64 libxml2-2.10.4-1.fc39.x86_64 libyaml-0.2.5-9.fc38.x86_64 libzstd-1.5.5-1.fc39.x86_64 lua-libs-5.4.4-9.fc39.x86_64 lz4-libs-1.9.4-3.fc39.x86_64 mpdecimal-2.5.1-6.fc38.x86_64 mpfr-4.1.1-3.fc38.x86_64 ncurses-base-6.4-5.20230520.fc39.noarch ncurses-libs-6.4-5.20230520.fc39.x86_64 nettle-3.9.1-1.fc39.x86_64 npth-1.6-13.fc39.x86_64 openldap-2.6.4-2.fc39.x86_64 openssl-libs-1:3.0.8-2.fc39.x86_64 p11-kit-0.24.1-6.fc38.x86_64 p11-kit-trust-0.24.1-6.fc38.x86_64 pcre2-10.42-1.fc38.1.x86_64 pcre2-syntax-10.42-1.fc38.1.noarch popt-1.19-2.fc38.x86_64 publicsuffix-list-dafsa-20230614-1.fc39.noarch python-pip-wheel-23.1.2-1.fc39.noarch python-setuptools-wheel-67.7.2-2.fc39.noarch python3-3.11.4-1.fc39.x86_64 python3-dateutil-1:2.8.2-6.fc39.noarch python3-dbus-1.3.2-2.fc38.x86_64 python3-distro-1.8.0-4.fc39.noarch python3-dnf-4.16.1-2.fc39.noarch python3-dnf-plugins-core-4.4.1-3.fc39.noarch python3-gpg-1.20.0-3.fc39.x86_64 python3-hawkey-0.70.1-3.fc39.x86_64 python3-libcomps-0.1.19-1.fc39.x86_64 python3-libdnf-0.70.1-3.fc39.x86_64 python3-libs-3.11.4-1.fc39.x86_64 python3-rpm-4.18.91-6.fc39.x86_64 python3-six-1.16.0-9.fc38.noarch python3-systemd-235-2.fc38.x86_64 readline-8.2-3.fc38.x86_64 rpm-4.18.91-6.fc39.x86_64 rpm-build-libs-4.18.91-6.fc39.x86_64 rpm-libs-4.18.91-6.fc39.x86_64 rpm-sequoia-1.4.1-1.fc39.x86_64 rpm-sign-libs-4.18.91-6.fc39.x86_64 sed-4.8-12.fc38.x86_64 setup-2.14.3-3.fc39.noarch shadow-utils-2:4.13-7.fc39.x86_64 sqlite-libs-3.41.2-3.fc39.x86_64 systemd-libs-253.5-6.fc39.x86_64 tpm2-tss-4.0.1-3.fc38.x86_64 tzdata-2023c-1.fc39.noarch xz-libs-5.4.3-1.fc39.x86_64 zchunk-libs-1.3.1-1.fc39.x86_64 zlib-1.2.13-3.fc38.x86_64 Complete! Finish(bootstrap): installing dnf tooling Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1688587310.274239/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 4.1 INFO: Mock Version: 4.1 INFO: Package manager dnf detected and used (direct choice) Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 3.8 kB/s | 257 B 00:00 fedora 44 MB/s | 71 MB 00:01 Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing group/module packages: bash x86_64 5.2.15-3.fc38 fedora 1.8 M bzip2 x86_64 1.0.8-13.fc38 fedora 52 k coreutils x86_64 9.3-1.fc39 fedora 1.1 M cpio x86_64 2.14-2.fc39 fedora 279 k diffutils x86_64 3.10-1.fc39 fedora 399 k fedora-release-common noarch 39-0.14 fedora 17 k findutils x86_64 1:4.9.0-4.fc39 fedora 491 k gawk x86_64 5.2.2-1.fc39 fedora 1.1 M glibc-minimal-langpack x86_64 2.37.9000-15.fc39 fedora 61 k grep x86_64 3.11-1.fc39 fedora 298 k gzip x86_64 1.12-3.fc38 fedora 166 k info x86_64 7.0.3-2.fc39 fedora 182 k patch x86_64 2.7.6-21.fc39 fedora 126 k redhat-rpm-config noarch 256-1.fc39 fedora 83 k rpm-build x86_64 4.18.91-6.fc39 fedora 78 k sed x86_64 4.8-12.fc38 fedora 306 k shadow-utils x86_64 2:4.13-7.fc39 fedora 1.3 M tar x86_64 2:1.34-8.fc39 fedora 888 k unzip x86_64 6.0-60.fc38 fedora 184 k util-linux x86_64 2.39.1-1.fc39 fedora 1.2 M which x86_64 2.21-39.fc39 fedora 42 k xz x86_64 5.4.3-1.fc39 fedora 555 k Installing dependencies: alternatives x86_64 1.24-1.fc39 fedora 39 k ansible-srpm-macros noarch 1-10.fc39 fedora 21 k audit-libs x86_64 3.1.1-1.fc39 fedora 117 k authselect x86_64 1.4.2-2.fc38 fedora 144 k authselect-libs x86_64 1.4.2-2.fc38 fedora 249 k basesystem noarch 11-17.fc39 fedora 7.0 k binutils x86_64 2.40-9.fc39 fedora 5.6 M binutils-gold x86_64 2.40-9.fc39 fedora 797 k bzip2-libs x86_64 1.0.8-13.fc38 fedora 41 k ca-certificates noarch 2023.2.60-2.fc38 fedora 845 k coreutils-common x86_64 9.3-1.fc39 fedora 2.1 M cracklib x86_64 2.9.7-31.fc38 fedora 92 k crypto-policies noarch 20230614-1.git5f3458e.fc39 fedora 94 k curl x86_64 8.1.2-1.fc39 fedora 345 k cyrus-sasl-lib x86_64 2.1.28-10.fc39 fedora 792 k debugedit x86_64 5.0-9.fc39 fedora 77 k dwz x86_64 0.15-2.fc38 fedora 135 k ed x86_64 1.19-2.fc38 fedora 78 k efi-srpm-macros noarch 5-8.fc39 fedora 22 k elfutils x86_64 0.189-3.fc39 fedora 537 k elfutils-debuginfod-client x86_64 0.189-3.fc39 fedora 38 k elfutils-default-yama-scope noarch 0.189-3.fc39 fedora 13 k elfutils-libelf x86_64 0.189-3.fc39 fedora 195 k elfutils-libs x86_64 0.189-3.fc39 fedora 258 k fedora-gpg-keys noarch 39-0.1 fedora 126 k fedora-release noarch 39-0.14 fedora 6.6 k fedora-release-identity-basic noarch 39-0.14 fedora 7.4 k fedora-repos noarch 39-0.1 fedora 9.4 k fedora-repos-rawhide noarch 39-0.1 fedora 9.0 k file x86_64 5.44-3.fc39 fedora 50 k file-libs x86_64 5.44-3.fc39 fedora 730 k filesystem x86_64 3.18-4.fc39 fedora 1.1 M fonts-srpm-macros noarch 1:2.0.5-11.fc38 fedora 26 k fpc-srpm-macros noarch 1.3-7.fc38 fedora 7.8 k gdb-minimal x86_64 13.2-1.fc39 fedora 4.2 M gdbm-libs x86_64 1:1.23-3.fc38 fedora 56 k ghc-srpm-macros noarch 1.6.1-1.fc38 fedora 8.0 k glibc x86_64 2.37.9000-15.fc39 fedora 2.1 M glibc-common x86_64 2.37.9000-15.fc39 fedora 339 k glibc-gconv-extra x86_64 2.37.9000-15.fc39 fedora 1.6 M gmp x86_64 1:6.2.1-4.fc38 fedora 313 k gnat-srpm-macros noarch 6-2.fc38 fedora 8.8 k go-srpm-macros noarch 3.2.0-3.fc39 fedora 27 k jansson x86_64 2.13.1-6.fc38 fedora 44 k kernel-srpm-macros noarch 1.0-19.fc39 fedora 10 k keyutils-libs x86_64 1.6.1-6.fc38 fedora 31 k krb5-libs x86_64 1.21-1.fc39 fedora 765 k libacl x86_64 2.3.1-7.fc39 fedora 23 k libarchive x86_64 3.6.1-5.fc39 fedora 400 k libattr x86_64 2.5.1-7.fc39 fedora 18 k libblkid x86_64 2.39.1-1.fc39 fedora 116 k libbrotli x86_64 1.0.9-11.fc38 fedora 317 k libcap x86_64 2.48-6.fc38 fedora 67 k libcap-ng x86_64 0.8.3-5.fc38 fedora 32 k libcom_err x86_64 1.47.0-1.fc39 fedora 26 k libcurl x86_64 8.1.2-1.fc39 fedora 323 k libdb x86_64 5.3.28-55.fc38 fedora 758 k libeconf x86_64 0.4.0-5.fc38 fedora 27 k libevent x86_64 2.1.12-8.fc38 fedora 257 k libfdisk x86_64 2.39.1-1.fc39 fedora 162 k libffi x86_64 3.4.4-2.fc38 fedora 38 k libgcc x86_64 13.1.1-4.fc39 fedora 107 k libgomp x86_64 13.1.1-4.fc39 fedora 317 k libidn2 x86_64 2.3.4-2.fc38 fedora 160 k libmount x86_64 2.39.1-1.fc39 fedora 155 k libnghttp2 x86_64 1.54.0-1.fc39 fedora 75 k libnsl2 x86_64 2.0.0-5.fc38 fedora 30 k libpkgconf x86_64 1.9.4-2.fc39 fedora 38 k libpsl x86_64 0.21.2-3.fc39 fedora 63 k libpwquality x86_64 1.4.5-3.fc38 fedora 119 k libselinux x86_64 3.5-1.fc39 fedora 87 k libsemanage x86_64 3.5-2.fc39 fedora 120 k libsepol x86_64 3.5-1.fc39 fedora 324 k libsigsegv x86_64 2.14-4.fc38 fedora 27 k libsmartcols x86_64 2.39.1-1.fc39 fedora 67 k libssh x86_64 0.10.5-1.fc39 fedora 211 k libssh-config noarch 0.10.5-1.fc39 fedora 9.0 k libstdc++ x86_64 13.1.1-4.fc39 fedora 861 k libtasn1 x86_64 4.19.0-2.fc38 fedora 74 k libtirpc x86_64 1.3.3-1.rc1.fc39 fedora 93 k libunistring x86_64 1.1-3.fc38 fedora 545 k libunistring1.0 x86_64 1.0-1.fc38 fedora 539 k libutempter x86_64 1.2.1-9.fc39 fedora 26 k libuuid x86_64 2.39.1-1.fc39 fedora 28 k libverto x86_64 0.3.2-5.fc38 fedora 21 k libxcrypt x86_64 4.4.35-1.fc39 fedora 119 k libxml2 x86_64 2.10.4-1.fc39 fedora 700 k libzstd x86_64 1.5.5-1.fc39 fedora 308 k lua-libs x86_64 5.4.4-9.fc39 fedora 133 k lua-srpm-macros noarch 1-8.fc38 fedora 8.6 k lz4-libs x86_64 1.9.4-3.fc39 fedora 67 k mpfr x86_64 4.1.1-3.fc38 fedora 600 k ncurses-base noarch 6.4-5.20230520.fc39 fedora 88 k ncurses-libs x86_64 6.4-5.20230520.fc39 fedora 336 k ocaml-srpm-macros noarch 7-3.fc38 fedora 13 k openblas-srpm-macros noarch 2-13.fc38 fedora 7.5 k openldap x86_64 2.6.4-2.fc39 fedora 255 k openssl-libs x86_64 1:3.0.8-2.fc39 fedora 2.1 M p11-kit x86_64 0.24.1-6.fc38 fedora 359 k p11-kit-trust x86_64 0.24.1-6.fc38 fedora 136 k package-notes-srpm-macros noarch 0.5-8.fc39 fedora 11 k pam x86_64 1.5.3-1.fc39 fedora 547 k pam-libs x86_64 1.5.3-1.fc39 fedora 57 k pcre2 x86_64 10.42-1.fc38.1 fedora 234 k pcre2-syntax noarch 10.42-1.fc38.1 fedora 144 k perl-srpm-macros noarch 1-48.fc38 fedora 8.4 k pkgconf x86_64 1.9.4-2.fc39 fedora 42 k pkgconf-m4 noarch 1.9.4-2.fc39 fedora 14 k pkgconf-pkg-config x86_64 1.9.4-2.fc39 fedora 9.5 k popt x86_64 1.19-2.fc38 fedora 67 k publicsuffix-list-dafsa noarch 20230614-1.fc39 fedora 57 k pyproject-srpm-macros noarch 1.9.0-1.fc39 fedora 15 k python-srpm-macros noarch 3.11-10.fc39 fedora 26 k qt5-srpm-macros noarch 5.15.10-1.fc39 fedora 7.8 k qt6-srpm-macros noarch 6.5.1-1.fc39 fedora 9.2 k readline x86_64 8.2-3.fc38 fedora 212 k rpm x86_64 4.18.91-6.fc39 fedora 529 k rpm-build-libs x86_64 4.18.91-6.fc39 fedora 95 k rpm-libs x86_64 4.18.91-6.fc39 fedora 309 k rpm-sequoia x86_64 1.4.1-1.fc39 fedora 843 k rpmautospec-rpm-macros noarch 0.3.5-2.fc39 fedora 8.9 k rust-srpm-macros noarch 24-2.fc39 fedora 12 k setup noarch 2.14.3-3.fc39 fedora 152 k sqlite-libs x86_64 3.41.2-3.fc39 fedora 669 k systemd-libs x86_64 253.5-6.fc39 fedora 652 k tzdata noarch 2023c-1.fc39 fedora 718 k util-linux-core x86_64 2.39.1-1.fc39 fedora 493 k xxhash-libs x86_64 0.8.1-5.fc39 fedora 40 k xz-libs x86_64 5.4.3-1.fc39 fedora 108 k zip x86_64 3.0-36.fc38 fedora 265 k zlib x86_64 1.2.13-3.fc38 fedora 95 k zstd x86_64 1.5.5-1.fc39 fedora 482 k Installing Groups: Buildsystem building group Transaction Summary ================================================================================ Install 154 Packages Total download size: 53 M Installed size: 181 M Downloading Packages: (1/154): audit-libs-3.1.1-1.fc39.x86_64.rpm 4.3 MB/s | 117 kB 00:00 (2/154): alternatives-1.24-1.fc39.x86_64.rpm 1.4 MB/s | 39 kB 00:00 (3/154): authselect-1.4.2-2.fc38.x86_64.rpm 53 MB/s | 144 kB 00:00 (4/154): ansible-srpm-macros-1-10.fc39.noarch.r 644 kB/s | 21 kB 00:00 (5/154): basesystem-11-17.fc39.noarch.rpm 1.4 MB/s | 7.0 kB 00:00 (6/154): authselect-libs-1.4.2-2.fc38.x86_64.rp 28 MB/s | 249 kB 00:00 (7/154): bash-5.2.15-3.fc38.x86_64.rpm 73 MB/s | 1.8 MB 00:00 (8/154): binutils-gold-2.40-9.fc39.x86_64.rpm 36 MB/s | 797 kB 00:00 (9/154): bzip2-1.0.8-13.fc38.x86_64.rpm 14 MB/s | 52 kB 00:00 (10/154): binutils-2.40-9.fc39.x86_64.rpm 166 MB/s | 5.6 MB 00:00 (11/154): bzip2-libs-1.0.8-13.fc38.x86_64.rpm 4.2 MB/s | 41 kB 00:00 (12/154): ca-certificates-2023.2.60-2.fc38.noar 91 MB/s | 845 kB 00:00 (13/154): coreutils-9.3-1.fc39.x86_64.rpm 145 MB/s | 1.1 MB 00:00 (14/154): cpio-2.14-2.fc39.x86_64.rpm 38 MB/s | 279 kB 00:00 (15/154): coreutils-common-9.3-1.fc39.x86_64.rp 151 MB/s | 2.1 MB 00:00 (16/154): cracklib-2.9.7-31.fc38.x86_64.rpm 18 MB/s | 92 kB 00:00 (17/154): crypto-policies-20230614-1.git5f3458e 17 MB/s | 94 kB 00:00 (18/154): debugedit-5.0-9.fc39.x86_64.rpm 20 MB/s | 77 kB 00:00 (19/154): curl-8.1.2-1.fc39.x86_64.rpm 46 MB/s | 345 kB 00:00 (20/154): cyrus-sasl-lib-2.1.28-10.fc39.x86_64. 91 MB/s | 792 kB 00:00 (21/154): diffutils-3.10-1.fc39.x86_64.rpm 64 MB/s | 399 kB 00:00 (22/154): dwz-0.15-2.fc38.x86_64.rpm 35 MB/s | 135 kB 00:00 (23/154): ed-1.19-2.fc38.x86_64.rpm 38 MB/s | 78 kB 00:00 (24/154): efi-srpm-macros-5-8.fc39.noarch.rpm 8.7 MB/s | 22 kB 00:00 (25/154): elfutils-debuginfod-client-0.189-3.fc 17 MB/s | 38 kB 00:00 (26/154): elfutils-0.189-3.fc39.x86_64.rpm 104 MB/s | 537 kB 00:00 (27/154): elfutils-default-yama-scope-0.189-3.f 4.7 MB/s | 13 kB 00:00 (28/154): fedora-gpg-keys-39-0.1.noarch.rpm 63 MB/s | 126 kB 00:00 (29/154): elfutils-libelf-0.189-3.fc39.x86_64.r 40 MB/s | 195 kB 00:00 (30/154): elfutils-libs-0.189-3.fc39.x86_64.rpm 59 MB/s | 258 kB 00:00 (31/154): fedora-release-39-0.14.noarch.rpm 4.2 MB/s | 6.6 kB 00:00 (32/154): fedora-release-common-39-0.14.noarch. 11 MB/s | 17 kB 00:00 (33/154): fedora-repos-39-0.1.noarch.rpm 5.8 MB/s | 9.4 kB 00:00 (34/154): fedora-release-identity-basic-39-0.14 2.9 MB/s | 7.4 kB 00:00 (35/154): fedora-repos-rawhide-39-0.1.noarch.rp 4.9 MB/s | 9.0 kB 00:00 (36/154): file-5.44-3.fc39.x86_64.rpm 17 MB/s | 50 kB 00:00 (37/154): file-libs-5.44-3.fc39.x86_64.rpm 132 MB/s | 730 kB 00:00 (38/154): findutils-4.9.0-4.fc39.x86_64.rpm 77 MB/s | 491 kB 00:00 (39/154): filesystem-3.18-4.fc39.x86_64.rpm 113 MB/s | 1.1 MB 00:00 (40/154): fonts-srpm-macros-2.0.5-11.fc38.noarc 7.1 MB/s | 26 kB 00:00 (41/154): fpc-srpm-macros-1.3-7.fc38.noarch.rpm 3.6 MB/s | 7.8 kB 00:00 (42/154): gawk-5.2.2-1.fc39.x86_64.rpm 208 MB/s | 1.1 MB 00:00 (43/154): gdbm-libs-1.23-3.fc38.x86_64.rpm 5.5 MB/s | 56 kB 00:00 (44/154): gdb-minimal-13.2-1.fc39.x86_64.rpm 218 MB/s | 4.2 MB 00:00 (45/154): ghc-srpm-macros-1.6.1-1.fc38.noarch.r 841 kB/s | 8.0 kB 00:00 (46/154): glibc-2.37.9000-15.fc39.x86_64.rpm 146 MB/s | 2.1 MB 00:00 (47/154): glibc-common-2.37.9000-15.fc39.x86_64 41 MB/s | 339 kB 00:00 (48/154): glibc-gconv-extra-2.37.9000-15.fc39.x 157 MB/s | 1.6 MB 00:00 (49/154): glibc-minimal-langpack-2.37.9000-15.f 15 MB/s | 61 kB 00:00 (50/154): gmp-6.2.1-4.fc38.x86_64.rpm 83 MB/s | 313 kB 00:00 (51/154): gnat-srpm-macros-6-2.fc38.noarch.rpm 5.8 MB/s | 8.8 kB 00:00 (52/154): go-srpm-macros-3.2.0-3.fc39.noarch.rp 16 MB/s | 27 kB 00:00 (53/154): grep-3.11-1.fc39.x86_64.rpm 102 MB/s | 298 kB 00:00 (54/154): gzip-1.12-3.fc38.x86_64.rpm 50 MB/s | 166 kB 00:00 (55/154): info-7.0.3-2.fc39.x86_64.rpm 58 MB/s | 182 kB 00:00 (56/154): jansson-2.13.1-6.fc38.x86_64.rpm 17 MB/s | 44 kB 00:00 (57/154): kernel-srpm-macros-1.0-19.fc39.noarch 4.6 MB/s | 10 kB 00:00 (58/154): keyutils-libs-1.6.1-6.fc38.x86_64.rpm 19 MB/s | 31 kB 00:00 (59/154): libacl-2.3.1-7.fc39.x86_64.rpm 18 MB/s | 23 kB 00:00 (60/154): krb5-libs-1.21-1.fc39.x86_64.rpm 149 MB/s | 765 kB 00:00 (61/154): libarchive-3.6.1-5.fc39.x86_64.rpm 83 MB/s | 400 kB 00:00 (62/154): libattr-2.5.1-7.fc39.x86_64.rpm 7.7 MB/s | 18 kB 00:00 (63/154): libblkid-2.39.1-1.fc39.x86_64.rpm 27 MB/s | 116 kB 00:00 (64/154): libbrotli-1.0.9-11.fc38.x86_64.rpm 56 MB/s | 317 kB 00:00 (65/154): libcap-2.48-6.fc38.x86_64.rpm 12 MB/s | 67 kB 00:00 (66/154): libcap-ng-0.8.3-5.fc38.x86_64.rpm 11 MB/s | 32 kB 00:00 (67/154): libcom_err-1.47.0-1.fc39.x86_64.rpm 9.6 MB/s | 26 kB 00:00 (68/154): libcurl-8.1.2-1.fc39.x86_64.rpm 67 MB/s | 323 kB 00:00 (69/154): libdb-5.3.28-55.fc38.x86_64.rpm 147 MB/s | 758 kB 00:00 (70/154): libeconf-0.4.0-5.fc38.x86_64.rpm 5.5 MB/s | 27 kB 00:00 (71/154): libevent-2.1.12-8.fc38.x86_64.rpm 97 MB/s | 257 kB 00:00 (72/154): libffi-3.4.4-2.fc38.x86_64.rpm 16 MB/s | 38 kB 00:00 (73/154): libfdisk-2.39.1-1.fc39.x86_64.rpm 46 MB/s | 162 kB 00:00 (74/154): libgcc-13.1.1-4.fc39.x86_64.rpm 24 MB/s | 107 kB 00:00 (75/154): libgomp-13.1.1-4.fc39.x86_64.rpm 70 MB/s | 317 kB 00:00 (76/154): libidn2-2.3.4-2.fc38.x86_64.rpm 37 MB/s | 160 kB 00:00 (77/154): libnghttp2-1.54.0-1.fc39.x86_64.rpm 21 MB/s | 75 kB 00:00 (78/154): libmount-2.39.1-1.fc39.x86_64.rpm 27 MB/s | 155 kB 00:00 (79/154): libnsl2-2.0.0-5.fc38.x86_64.rpm 7.1 MB/s | 30 kB 00:00 (80/154): libpkgconf-1.9.4-2.fc39.x86_64.rpm 26 MB/s | 38 kB 00:00 (81/154): libpsl-0.21.2-3.fc39.x86_64.rpm 32 MB/s | 63 kB 00:00 (82/154): libpwquality-1.4.5-3.fc38.x86_64.rpm 45 MB/s | 119 kB 00:00 (83/154): libselinux-3.5-1.fc39.x86_64.rpm 29 MB/s | 87 kB 00:00 (84/154): libsemanage-3.5-2.fc39.x86_64.rpm 41 MB/s | 120 kB 00:00 (85/154): libsepol-3.5-1.fc39.x86_64.rpm 89 MB/s | 324 kB 00:00 (86/154): libsigsegv-2.14-4.fc38.x86_64.rpm 8.4 MB/s | 27 kB 00:00 (87/154): libsmartcols-2.39.1-1.fc39.x86_64.rpm 28 MB/s | 67 kB 00:00 (88/154): libssh-config-0.10.5-1.fc39.noarch.rp 6.1 MB/s | 9.0 kB 00:00 (89/154): libssh-0.10.5-1.fc39.x86_64.rpm 64 MB/s | 211 kB 00:00 (90/154): libstdc++-13.1.1-4.fc39.x86_64.rpm 151 MB/s | 861 kB 00:00 (91/154): libtasn1-4.19.0-2.fc38.x86_64.rpm 15 MB/s | 74 kB 00:00 (92/154): libtirpc-1.3.3-1.rc1.fc39.x86_64.rpm 21 MB/s | 93 kB 00:00 (93/154): libutempter-1.2.1-9.fc39.x86_64.rpm 14 MB/s | 26 kB 00:00 (94/154): libunistring1.0-1.0-1.fc38.x86_64.rpm 89 MB/s | 539 kB 00:00 (95/154): libunistring-1.1-3.fc38.x86_64.rpm 65 MB/s | 545 kB 00:00 (96/154): libuuid-2.39.1-1.fc39.x86_64.rpm 6.9 MB/s | 28 kB 00:00 (97/154): libverto-0.3.2-5.fc38.x86_64.rpm 11 MB/s | 21 kB 00:00 (98/154): libxcrypt-4.4.35-1.fc39.x86_64.rpm 52 MB/s | 119 kB 00:00 (99/154): libxml2-2.10.4-1.fc39.x86_64.rpm 152 MB/s | 700 kB 00:00 (100/154): libzstd-1.5.5-1.fc39.x86_64.rpm 55 MB/s | 308 kB 00:00 (101/154): lua-libs-5.4.4-9.fc39.x86_64.rpm 28 MB/s | 133 kB 00:00 (102/154): lua-srpm-macros-1-8.fc38.noarch.rpm 5.1 MB/s | 8.6 kB 00:00 (103/154): lz4-libs-1.9.4-3.fc39.x86_64.rpm 40 MB/s | 67 kB 00:00 (104/154): ncurses-base-6.4-5.20230520.fc39.noa 42 MB/s | 88 kB 00:00 (105/154): mpfr-4.1.1-3.fc38.x86_64.rpm 115 MB/s | 600 kB 00:00 (106/154): ocaml-srpm-macros-7-3.fc38.noarch.rp 6.3 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pkgconf-m4-1.9.4-2.fc39.noarch.rpm 5.5 MB/s | 14 kB 00:00 (122/154): pkgconf-pkg-config-1.9.4-2.fc39.x86_ 3.8 MB/s | 9.5 kB 00:00 (123/154): popt-1.19-2.fc38.x86_64.rpm 19 MB/s | 67 kB 00:00 (124/154): pyproject-srpm-macros-1.9.0-1.fc39.n 5.0 MB/s | 15 kB 00:00 (125/154): publicsuffix-list-dafsa-20230614-1.f 13 MB/s | 57 kB 00:00 (126/154): qt5-srpm-macros-5.15.10-1.fc39.noarc 3.0 MB/s | 7.8 kB 00:00 (127/154): qt6-srpm-macros-6.5.1-1.fc39.noarch. 3.2 MB/s | 9.2 kB 00:00 (128/154): python-srpm-macros-3.11-10.fc39.noar 5.4 MB/s | 26 kB 00:00 (129/154): readline-8.2-3.fc38.x86_64.rpm 54 MB/s | 212 kB 00:00 (130/154): redhat-rpm-config-256-1.fc39.noarch. 18 MB/s | 83 kB 00:00 (131/154): rpm-4.18.91-6.fc39.x86_64.rpm 106 MB/s | 529 kB 00:00 (132/154): rpm-build-4.18.91-6.fc39.x86_64.rpm 29 MB/s | 78 kB 00:00 (133/154): rpm-build-libs-4.18.91-6.fc39.x86_64 37 MB/s | 95 kB 00:00 (134/154): rpm-libs-4.18.91-6.fc39.x86_64.rpm 72 MB/s | 309 kB 00:00 (135/154): 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00:00 (150/154): xz-libs-5.4.3-1.fc39.x86_64.rpm 31 MB/s | 108 kB 00:00 (151/154): xz-5.4.3-1.fc39.x86_64.rpm 76 MB/s | 555 kB 00:00 (152/154): zip-3.0-36.fc38.x86_64.rpm 51 MB/s | 265 kB 00:00 (153/154): zlib-1.2.13-3.fc38.x86_64.rpm 23 MB/s | 95 kB 00:00 (154/154): zstd-1.5.5-1.fc39.x86_64.rpm 112 MB/s | 482 kB 00:00 -------------------------------------------------------------------------------- Total 82 MB/s | 53 MB 00:00 fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x18B8E74C: Userid : "Fedora (39) " Fingerprint: E8F2 3996 F232 1864 0CB4 4CBE 75CF 5AC4 18B8 E74C From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-39-primary Key imported successfully fedora 1.6 MB/s | 1.6 kB 00:00 GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-39-primary (0x18B8E74C) is already installed fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0xEB10B464: Userid : "Fedora (38) " Fingerprint: 6A51 BBAB BA3D 5467 B617 1221 809A 8D7C EB10 B464 From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-4.fc39.x86_64 1/1 Preparing : 1/1 Installing : libgcc-13.1.1-4.fc39.x86_64 1/154 Running scriptlet: libgcc-13.1.1-4.fc39.x86_64 1/154 Installing : crypto-policies-20230614-1.git5f3458e.fc39.noarc 2/154 Running scriptlet: crypto-policies-20230614-1.git5f3458e.fc39.noarc 2/154 Installing : tzdata-2023c-1.fc39.noarch 3/154 Installing : fedora-release-identity-basic-39-0.14.noarch 4/154 Installing : rust-srpm-macros-24-2.fc39.noarch 5/154 Installing : qt6-srpm-macros-6.5.1-1.fc39.noarch 6/154 Installing : qt5-srpm-macros-5.15.10-1.fc39.noarch 7/154 Installing : pyproject-srpm-macros-1.9.0-1.fc39.noarch 8/154 Installing : publicsuffix-list-dafsa-20230614-1.fc39.noarch 9/154 Installing : pkgconf-m4-1.9.4-2.fc39.noarch 10/154 Installing : perl-srpm-macros-1-48.fc38.noarch 11/154 Installing : pcre2-syntax-10.42-1.fc38.1.noarch 12/154 Installing : package-notes-srpm-macros-0.5-8.fc39.noarch 13/154 Installing : 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fedora-release-39-0.14.noarch 31/154 Verifying : fedora-release-common-39-0.14.noarch 32/154 Verifying : fedora-release-identity-basic-39-0.14.noarch 33/154 Verifying : fedora-repos-39-0.1.noarch 34/154 Verifying : fedora-repos-rawhide-39-0.1.noarch 35/154 Verifying : file-5.44-3.fc39.x86_64 36/154 Verifying : file-libs-5.44-3.fc39.x86_64 37/154 Verifying : filesystem-3.18-4.fc39.x86_64 38/154 Verifying : findutils-1:4.9.0-4.fc39.x86_64 39/154 Verifying : fonts-srpm-macros-1:2.0.5-11.fc38.noarch 40/154 Verifying : fpc-srpm-macros-1.3-7.fc38.noarch 41/154 Verifying : gawk-5.2.2-1.fc39.x86_64 42/154 Verifying : gdb-minimal-13.2-1.fc39.x86_64 43/154 Verifying : gdbm-libs-1:1.23-3.fc38.x86_64 44/154 Verifying : ghc-srpm-macros-1.6.1-1.fc38.noarch 45/154 Verifying : glibc-2.37.9000-15.fc39.x86_64 46/154 Verifying : glibc-common-2.37.9000-15.fc39.x86_64 47/154 Verifying : glibc-gconv-extra-2.37.9000-15.fc39.x86_64 48/154 Verifying : glibc-minimal-langpack-2.37.9000-15.fc39.x86_64 49/154 Verifying : gmp-1:6.2.1-4.fc38.x86_64 50/154 Verifying : gnat-srpm-macros-6-2.fc38.noarch 51/154 Verifying : go-srpm-macros-3.2.0-3.fc39.noarch 52/154 Verifying : grep-3.11-1.fc39.x86_64 53/154 Verifying : gzip-1.12-3.fc38.x86_64 54/154 Verifying : info-7.0.3-2.fc39.x86_64 55/154 Verifying : jansson-2.13.1-6.fc38.x86_64 56/154 Verifying : kernel-srpm-macros-1.0-19.fc39.noarch 57/154 Verifying : keyutils-libs-1.6.1-6.fc38.x86_64 58/154 Verifying : krb5-libs-1.21-1.fc39.x86_64 59/154 Verifying : libacl-2.3.1-7.fc39.x86_64 60/154 Verifying : libarchive-3.6.1-5.fc39.x86_64 61/154 Verifying : libattr-2.5.1-7.fc39.x86_64 62/154 Verifying : libblkid-2.39.1-1.fc39.x86_64 63/154 Verifying : libbrotli-1.0.9-11.fc38.x86_64 64/154 Verifying : libcap-2.48-6.fc38.x86_64 65/154 Verifying : libcap-ng-0.8.3-5.fc38.x86_64 66/154 Verifying : libcom_err-1.47.0-1.fc39.x86_64 67/154 Verifying : libcurl-8.1.2-1.fc39.x86_64 68/154 Verifying : libdb-5.3.28-55.fc38.x86_64 69/154 Verifying : libeconf-0.4.0-5.fc38.x86_64 70/154 Verifying : libevent-2.1.12-8.fc38.x86_64 71/154 Verifying : libfdisk-2.39.1-1.fc39.x86_64 72/154 Verifying : libffi-3.4.4-2.fc38.x86_64 73/154 Verifying : libgcc-13.1.1-4.fc39.x86_64 74/154 Verifying : libgomp-13.1.1-4.fc39.x86_64 75/154 Verifying : libidn2-2.3.4-2.fc38.x86_64 76/154 Verifying : libmount-2.39.1-1.fc39.x86_64 77/154 Verifying : libnghttp2-1.54.0-1.fc39.x86_64 78/154 Verifying : libnsl2-2.0.0-5.fc38.x86_64 79/154 Verifying : libpkgconf-1.9.4-2.fc39.x86_64 80/154 Verifying : libpsl-0.21.2-3.fc39.x86_64 81/154 Verifying : libpwquality-1.4.5-3.fc38.x86_64 82/154 Verifying : libselinux-3.5-1.fc39.x86_64 83/154 Verifying : libsemanage-3.5-2.fc39.x86_64 84/154 Verifying : libsepol-3.5-1.fc39.x86_64 85/154 Verifying : libsigsegv-2.14-4.fc38.x86_64 86/154 Verifying : libsmartcols-2.39.1-1.fc39.x86_64 87/154 Verifying : libssh-0.10.5-1.fc39.x86_64 88/154 Verifying : libssh-config-0.10.5-1.fc39.noarch 89/154 Verifying : libstdc++-13.1.1-4.fc39.x86_64 90/154 Verifying : libtasn1-4.19.0-2.fc38.x86_64 91/154 Verifying : libtirpc-1.3.3-1.rc1.fc39.x86_64 92/154 Verifying : libunistring-1.1-3.fc38.x86_64 93/154 Verifying : libunistring1.0-1.0-1.fc38.x86_64 94/154 Verifying : libutempter-1.2.1-9.fc39.x86_64 95/154 Verifying : libuuid-2.39.1-1.fc39.x86_64 96/154 Verifying : libverto-0.3.2-5.fc38.x86_64 97/154 Verifying : libxcrypt-4.4.35-1.fc39.x86_64 98/154 Verifying : libxml2-2.10.4-1.fc39.x86_64 99/154 Verifying : libzstd-1.5.5-1.fc39.x86_64 100/154 Verifying : lua-libs-5.4.4-9.fc39.x86_64 101/154 Verifying : lua-srpm-macros-1-8.fc38.noarch 102/154 Verifying : lz4-libs-1.9.4-3.fc39.x86_64 103/154 Verifying : mpfr-4.1.1-3.fc38.x86_64 104/154 Verifying : ncurses-base-6.4-5.20230520.fc39.noarch 105/154 Verifying : ncurses-libs-6.4-5.20230520.fc39.x86_64 106/154 Verifying : ocaml-srpm-macros-7-3.fc38.noarch 107/154 Verifying : openblas-srpm-macros-2-13.fc38.noarch 108/154 Verifying : openldap-2.6.4-2.fc39.x86_64 109/154 Verifying : openssl-libs-1:3.0.8-2.fc39.x86_64 110/154 Verifying : p11-kit-0.24.1-6.fc38.x86_64 111/154 Verifying : p11-kit-trust-0.24.1-6.fc38.x86_64 112/154 Verifying : package-notes-srpm-macros-0.5-8.fc39.noarch 113/154 Verifying : pam-1.5.3-1.fc39.x86_64 114/154 Verifying : pam-libs-1.5.3-1.fc39.x86_64 115/154 Verifying : patch-2.7.6-21.fc39.x86_64 116/154 Verifying : pcre2-10.42-1.fc38.1.x86_64 117/154 Verifying : pcre2-syntax-10.42-1.fc38.1.noarch 118/154 Verifying : perl-srpm-macros-1-48.fc38.noarch 119/154 Verifying : pkgconf-1.9.4-2.fc39.x86_64 120/154 Verifying : pkgconf-m4-1.9.4-2.fc39.noarch 121/154 Verifying : pkgconf-pkg-config-1.9.4-2.fc39.x86_64 122/154 Verifying : popt-1.19-2.fc38.x86_64 123/154 Verifying : publicsuffix-list-dafsa-20230614-1.fc39.noarch 124/154 Verifying : pyproject-srpm-macros-1.9.0-1.fc39.noarch 125/154 Verifying : python-srpm-macros-3.11-10.fc39.noarch 126/154 Verifying : qt5-srpm-macros-5.15.10-1.fc39.noarch 127/154 Verifying : qt6-srpm-macros-6.5.1-1.fc39.noarch 128/154 Verifying : readline-8.2-3.fc38.x86_64 129/154 Verifying : redhat-rpm-config-256-1.fc39.noarch 130/154 Verifying : rpm-4.18.91-6.fc39.x86_64 131/154 Verifying : rpm-build-4.18.91-6.fc39.x86_64 132/154 Verifying : rpm-build-libs-4.18.91-6.fc39.x86_64 133/154 Verifying : rpm-libs-4.18.91-6.fc39.x86_64 134/154 Verifying : rpm-sequoia-1.4.1-1.fc39.x86_64 135/154 Verifying : rpmautospec-rpm-macros-0.3.5-2.fc39.noarch 136/154 Verifying : rust-srpm-macros-24-2.fc39.noarch 137/154 Verifying : sed-4.8-12.fc38.x86_64 138/154 Verifying : setup-2.14.3-3.fc39.noarch 139/154 Verifying : shadow-utils-2:4.13-7.fc39.x86_64 140/154 Verifying : sqlite-libs-3.41.2-3.fc39.x86_64 141/154 Verifying : systemd-libs-253.5-6.fc39.x86_64 142/154 Verifying : tar-2:1.34-8.fc39.x86_64 143/154 Verifying : tzdata-2023c-1.fc39.noarch 144/154 Verifying : unzip-6.0-60.fc38.x86_64 145/154 Verifying : util-linux-2.39.1-1.fc39.x86_64 146/154 Verifying : util-linux-core-2.39.1-1.fc39.x86_64 147/154 Verifying : which-2.21-39.fc39.x86_64 148/154 Verifying : xxhash-libs-0.8.1-5.fc39.x86_64 149/154 Verifying : xz-5.4.3-1.fc39.x86_64 150/154 Verifying : xz-libs-5.4.3-1.fc39.x86_64 151/154 Verifying : zip-3.0-36.fc38.x86_64 152/154 Verifying : zlib-1.2.13-3.fc38.x86_64 153/154 Verifying : zstd-1.5.5-1.fc39.x86_64 154/154 Installed: alternatives-1.24-1.fc39.x86_64 ansible-srpm-macros-1-10.fc39.noarch audit-libs-3.1.1-1.fc39.x86_64 authselect-1.4.2-2.fc38.x86_64 authselect-libs-1.4.2-2.fc38.x86_64 basesystem-11-17.fc39.noarch bash-5.2.15-3.fc38.x86_64 binutils-2.40-9.fc39.x86_64 binutils-gold-2.40-9.fc39.x86_64 bzip2-1.0.8-13.fc38.x86_64 bzip2-libs-1.0.8-13.fc38.x86_64 ca-certificates-2023.2.60-2.fc38.noarch coreutils-9.3-1.fc39.x86_64 coreutils-common-9.3-1.fc39.x86_64 cpio-2.14-2.fc39.x86_64 cracklib-2.9.7-31.fc38.x86_64 crypto-policies-20230614-1.git5f3458e.fc39.noarch curl-8.1.2-1.fc39.x86_64 cyrus-sasl-lib-2.1.28-10.fc39.x86_64 debugedit-5.0-9.fc39.x86_64 diffutils-3.10-1.fc39.x86_64 dwz-0.15-2.fc38.x86_64 ed-1.19-2.fc38.x86_64 efi-srpm-macros-5-8.fc39.noarch elfutils-0.189-3.fc39.x86_64 elfutils-debuginfod-client-0.189-3.fc39.x86_64 elfutils-default-yama-scope-0.189-3.fc39.noarch elfutils-libelf-0.189-3.fc39.x86_64 elfutils-libs-0.189-3.fc39.x86_64 fedora-gpg-keys-39-0.1.noarch fedora-release-39-0.14.noarch fedora-release-common-39-0.14.noarch fedora-release-identity-basic-39-0.14.noarch fedora-repos-39-0.1.noarch fedora-repos-rawhide-39-0.1.noarch file-5.44-3.fc39.x86_64 file-libs-5.44-3.fc39.x86_64 filesystem-3.18-4.fc39.x86_64 findutils-1:4.9.0-4.fc39.x86_64 fonts-srpm-macros-1:2.0.5-11.fc38.noarch fpc-srpm-macros-1.3-7.fc38.noarch gawk-5.2.2-1.fc39.x86_64 gdb-minimal-13.2-1.fc39.x86_64 gdbm-libs-1:1.23-3.fc38.x86_64 ghc-srpm-macros-1.6.1-1.fc38.noarch glibc-2.37.9000-15.fc39.x86_64 glibc-common-2.37.9000-15.fc39.x86_64 glibc-gconv-extra-2.37.9000-15.fc39.x86_64 glibc-minimal-langpack-2.37.9000-15.fc39.x86_64 gmp-1:6.2.1-4.fc38.x86_64 gnat-srpm-macros-6-2.fc38.noarch go-srpm-macros-3.2.0-3.fc39.noarch grep-3.11-1.fc39.x86_64 gzip-1.12-3.fc38.x86_64 info-7.0.3-2.fc39.x86_64 jansson-2.13.1-6.fc38.x86_64 kernel-srpm-macros-1.0-19.fc39.noarch keyutils-libs-1.6.1-6.fc38.x86_64 krb5-libs-1.21-1.fc39.x86_64 libacl-2.3.1-7.fc39.x86_64 libarchive-3.6.1-5.fc39.x86_64 libattr-2.5.1-7.fc39.x86_64 libblkid-2.39.1-1.fc39.x86_64 libbrotli-1.0.9-11.fc38.x86_64 libcap-2.48-6.fc38.x86_64 libcap-ng-0.8.3-5.fc38.x86_64 libcom_err-1.47.0-1.fc39.x86_64 libcurl-8.1.2-1.fc39.x86_64 libdb-5.3.28-55.fc38.x86_64 libeconf-0.4.0-5.fc38.x86_64 libevent-2.1.12-8.fc38.x86_64 libfdisk-2.39.1-1.fc39.x86_64 libffi-3.4.4-2.fc38.x86_64 libgcc-13.1.1-4.fc39.x86_64 libgomp-13.1.1-4.fc39.x86_64 libidn2-2.3.4-2.fc38.x86_64 libmount-2.39.1-1.fc39.x86_64 libnghttp2-1.54.0-1.fc39.x86_64 libnsl2-2.0.0-5.fc38.x86_64 libpkgconf-1.9.4-2.fc39.x86_64 libpsl-0.21.2-3.fc39.x86_64 libpwquality-1.4.5-3.fc38.x86_64 libselinux-3.5-1.fc39.x86_64 libsemanage-3.5-2.fc39.x86_64 libsepol-3.5-1.fc39.x86_64 libsigsegv-2.14-4.fc38.x86_64 libsmartcols-2.39.1-1.fc39.x86_64 libssh-0.10.5-1.fc39.x86_64 libssh-config-0.10.5-1.fc39.noarch libstdc++-13.1.1-4.fc39.x86_64 libtasn1-4.19.0-2.fc38.x86_64 libtirpc-1.3.3-1.rc1.fc39.x86_64 libunistring-1.1-3.fc38.x86_64 libunistring1.0-1.0-1.fc38.x86_64 libutempter-1.2.1-9.fc39.x86_64 libuuid-2.39.1-1.fc39.x86_64 libverto-0.3.2-5.fc38.x86_64 libxcrypt-4.4.35-1.fc39.x86_64 libxml2-2.10.4-1.fc39.x86_64 libzstd-1.5.5-1.fc39.x86_64 lua-libs-5.4.4-9.fc39.x86_64 lua-srpm-macros-1-8.fc38.noarch lz4-libs-1.9.4-3.fc39.x86_64 mpfr-4.1.1-3.fc38.x86_64 ncurses-base-6.4-5.20230520.fc39.noarch ncurses-libs-6.4-5.20230520.fc39.x86_64 ocaml-srpm-macros-7-3.fc38.noarch openblas-srpm-macros-2-13.fc38.noarch openldap-2.6.4-2.fc39.x86_64 openssl-libs-1:3.0.8-2.fc39.x86_64 p11-kit-0.24.1-6.fc38.x86_64 p11-kit-trust-0.24.1-6.fc38.x86_64 package-notes-srpm-macros-0.5-8.fc39.noarch pam-1.5.3-1.fc39.x86_64 pam-libs-1.5.3-1.fc39.x86_64 patch-2.7.6-21.fc39.x86_64 pcre2-10.42-1.fc38.1.x86_64 pcre2-syntax-10.42-1.fc38.1.noarch perl-srpm-macros-1-48.fc38.noarch pkgconf-1.9.4-2.fc39.x86_64 pkgconf-m4-1.9.4-2.fc39.noarch pkgconf-pkg-config-1.9.4-2.fc39.x86_64 popt-1.19-2.fc38.x86_64 publicsuffix-list-dafsa-20230614-1.fc39.noarch pyproject-srpm-macros-1.9.0-1.fc39.noarch python-srpm-macros-3.11-10.fc39.noarch qt5-srpm-macros-5.15.10-1.fc39.noarch qt6-srpm-macros-6.5.1-1.fc39.noarch readline-8.2-3.fc38.x86_64 redhat-rpm-config-256-1.fc39.noarch rpm-4.18.91-6.fc39.x86_64 rpm-build-4.18.91-6.fc39.x86_64 rpm-build-libs-4.18.91-6.fc39.x86_64 rpm-libs-4.18.91-6.fc39.x86_64 rpm-sequoia-1.4.1-1.fc39.x86_64 rpmautospec-rpm-macros-0.3.5-2.fc39.noarch rust-srpm-macros-24-2.fc39.noarch sed-4.8-12.fc38.x86_64 setup-2.14.3-3.fc39.noarch shadow-utils-2:4.13-7.fc39.x86_64 sqlite-libs-3.41.2-3.fc39.x86_64 systemd-libs-253.5-6.fc39.x86_64 tar-2:1.34-8.fc39.x86_64 tzdata-2023c-1.fc39.noarch unzip-6.0-60.fc38.x86_64 util-linux-2.39.1-1.fc39.x86_64 util-linux-core-2.39.1-1.fc39.x86_64 which-2.21-39.fc39.x86_64 xxhash-libs-0.8.1-5.fc39.x86_64 xz-5.4.3-1.fc39.x86_64 xz-libs-5.4.3-1.fc39.x86_64 zip-3.0-36.fc38.x86_64 zlib-1.2.13-3.fc38.x86_64 zstd-1.5.5-1.fc39.x86_64 Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: bzip2-libs-1.0.8-13.fc38.x86_64 pam-libs-1.5.3-1.fc39.x86_64 libutempter-1.2.1-9.fc39.x86_64 p11-kit-trust-0.24.1-6.fc38.x86_64 diffutils-3.10-1.fc39.x86_64 elfutils-libelf-0.189-3.fc39.x86_64 elfutils-libs-0.189-3.fc39.x86_64 crypto-policies-20230614-1.git5f3458e.fc39.noarch libpwquality-1.4.5-3.fc38.x86_64 glibc-minimal-langpack-2.37.9000-15.fc39.x86_64 cyrus-sasl-lib-2.1.28-10.fc39.x86_64 gpg-pubkey-eb10b464-6202d9c6 libstdc++-13.1.1-4.fc39.x86_64 libunistring1.0-1.0-1.fc38.x86_64 libnsl2-2.0.0-5.fc38.x86_64 libbrotli-1.0.9-11.fc38.x86_64 fedora-repos-39-0.1.noarch bzip2-1.0.8-13.fc38.x86_64 libzstd-1.5.5-1.fc39.x86_64 sed-4.8-12.fc38.x86_64 glibc-2.37.9000-15.fc39.x86_64 fedora-release-39-0.14.noarch fpc-srpm-macros-1.3-7.fc38.noarch libattr-2.5.1-7.fc39.x86_64 libcom_err-1.47.0-1.fc39.x86_64 libuuid-2.39.1-1.fc39.x86_64 libssh-config-0.10.5-1.fc39.noarch rust-srpm-macros-24-2.fc39.noarch libblkid-2.39.1-1.fc39.x86_64 openblas-srpm-macros-2-13.fc38.noarch patch-2.7.6-21.fc39.x86_64 openldap-2.6.4-2.fc39.x86_64 pkgconf-m4-1.9.4-2.fc39.noarch xz-5.4.3-1.fc39.x86_64 fedora-release-common-39-0.14.noarch libacl-2.3.1-7.fc39.x86_64 authselect-1.4.2-2.fc38.x86_64 libssh-0.10.5-1.fc39.x86_64 ansible-srpm-macros-1-10.fc39.noarch popt-1.19-2.fc38.x86_64 xxhash-libs-0.8.1-5.fc39.x86_64 libunistring-1.1-3.fc38.x86_64 shadow-utils-4.13-7.fc39.x86_64 fonts-srpm-macros-2.0.5-11.fc38.noarch tzdata-2023c-1.fc39.noarch mpfr-4.1.1-3.fc38.x86_64 jansson-2.13.1-6.fc38.x86_64 pam-1.5.3-1.fc39.x86_64 gdb-minimal-13.2-1.fc39.x86_64 xz-libs-5.4.3-1.fc39.x86_64 ncurses-libs-6.4-5.20230520.fc39.x86_64 fedora-repos-rawhide-39-0.1.noarch gnat-srpm-macros-6-2.fc38.noarch fedora-release-identity-basic-39-0.14.noarch efi-srpm-macros-5-8.fc39.noarch fedora-gpg-keys-39-0.1.noarch openssl-libs-3.0.8-2.fc39.x86_64 setup-2.14.3-3.fc39.noarch coreutils-common-9.3-1.fc39.x86_64 ghc-srpm-macros-1.6.1-1.fc38.noarch pkgconf-pkg-config-1.9.4-2.fc39.x86_64 kernel-srpm-macros-1.0-19.fc39.noarch authselect-libs-1.4.2-2.fc38.x86_64 libevent-2.1.12-8.fc38.x86_64 cpio-2.14-2.fc39.x86_64 findutils-4.9.0-4.fc39.x86_64 pyproject-srpm-macros-1.9.0-1.fc39.noarch libffi-3.4.4-2.fc38.x86_64 perl-srpm-macros-1-48.fc38.noarch lua-srpm-macros-1-8.fc38.noarch unzip-6.0-60.fc38.x86_64 zip-3.0-36.fc38.x86_64 redhat-rpm-config-256-1.fc39.noarch alternatives-1.24-1.fc39.x86_64 binutils-gold-2.40-9.fc39.x86_64 rpm-libs-4.18.91-6.fc39.x86_64 file-5.44-3.fc39.x86_64 rpm-4.18.91-6.fc39.x86_64 cracklib-2.9.7-31.fc38.x86_64 zlib-1.2.13-3.fc38.x86_64 rpm-sequoia-1.4.1-1.fc39.x86_64 lz4-libs-1.9.4-3.fc39.x86_64 coreutils-9.3-1.fc39.x86_64 libpsl-0.21.2-3.fc39.x86_64 krb5-libs-1.21-1.fc39.x86_64 audit-libs-3.1.1-1.fc39.x86_64 gpg-pubkey-18b8e74c-62f2920f libeconf-0.4.0-5.fc38.x86_64 libsepol-3.5-1.fc39.x86_64 pcre2-10.42-1.fc38.1.x86_64 publicsuffix-list-dafsa-20230614-1.fc39.noarch rpm-build-4.18.91-6.fc39.x86_64 libdb-5.3.28-55.fc38.x86_64 file-libs-5.44-3.fc39.x86_64 ncurses-base-6.4-5.20230520.fc39.noarch curl-8.1.2-1.fc39.x86_64 go-srpm-macros-3.2.0-3.fc39.noarch libpkgconf-1.9.4-2.fc39.x86_64 package-notes-srpm-macros-0.5-8.fc39.noarch tar-1.34-8.fc39.x86_64 libcurl-8.1.2-1.fc39.x86_64 systemd-libs-253.5-6.fc39.x86_64 elfutils-default-yama-scope-0.189-3.fc39.noarch gmp-6.2.1-4.fc38.x86_64 libsmartcols-2.39.1-1.fc39.x86_64 libxml2-2.10.4-1.fc39.x86_64 elfutils-0.189-3.fc39.x86_64 libselinux-3.5-1.fc39.x86_64 lua-libs-5.4.4-9.fc39.x86_64 libtasn1-4.19.0-2.fc38.x86_64 bash-5.2.15-3.fc38.x86_64 ca-certificates-2023.2.60-2.fc38.noarch rpmautospec-rpm-macros-0.3.5-2.fc39.noarch glibc-common-2.37.9000-15.fc39.x86_64 libsemanage-3.5-2.fc39.x86_64 libnghttp2-1.54.0-1.fc39.x86_64 libtirpc-1.3.3-1.rc1.fc39.x86_64 binutils-2.40-9.fc39.x86_64 elfutils-debuginfod-client-0.189-3.fc39.x86_64 libsigsegv-2.14-4.fc38.x86_64 qt6-srpm-macros-6.5.1-1.fc39.noarch libidn2-2.3.4-2.fc38.x86_64 libfdisk-2.39.1-1.fc39.x86_64 dwz-0.15-2.fc38.x86_64 python-srpm-macros-3.11-10.fc39.noarch which-2.21-39.fc39.x86_64 libxcrypt-4.4.35-1.fc39.x86_64 gdbm-libs-1.23-3.fc38.x86_64 libgomp-13.1.1-4.fc39.x86_64 libcap-ng-0.8.3-5.fc38.x86_64 p11-kit-0.24.1-6.fc38.x86_64 readline-8.2-3.fc38.x86_64 grep-3.11-1.fc39.x86_64 keyutils-libs-1.6.1-6.fc38.x86_64 libmount-2.39.1-1.fc39.x86_64 qt5-srpm-macros-5.15.10-1.fc39.noarch ocaml-srpm-macros-7-3.fc38.noarch libarchive-3.6.1-5.fc39.x86_64 sqlite-libs-3.41.2-3.fc39.x86_64 util-linux-core-2.39.1-1.fc39.x86_64 gzip-1.12-3.fc38.x86_64 pcre2-syntax-10.42-1.fc38.1.noarch libcap-2.48-6.fc38.x86_64 ed-1.19-2.fc38.x86_64 debugedit-5.0-9.fc39.x86_64 util-linux-2.39.1-1.fc39.x86_64 zstd-1.5.5-1.fc39.x86_64 glibc-gconv-extra-2.37.9000-15.fc39.x86_64 libgcc-13.1.1-4.fc39.x86_64 pkgconf-1.9.4-2.fc39.x86_64 gawk-5.2.2-1.fc39.x86_64 libverto-0.3.2-5.fc38.x86_64 filesystem-3.18-4.fc39.x86_64 rpm-build-libs-4.18.91-6.fc39.x86_64 info-7.0.3-2.fc39.x86_64 basesystem-11-17.fc39.noarch Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1688342400 Wrote: /builddir/build/SRPMS/rdkit-2023.03.2-1.fc39.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1688587310.274239/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-x86_64-1688587310.274239/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-x86_64-1688587310.274239/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-m4cdisd6/rdkit/rdkit.spec) Config(child) 1 minutes 8 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running (timeout=18000): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/rdkit-2023.03.2-1.fc39.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1688587310.274239 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 4.1 starting (python version = 3.11.3, NVR = mock-4.1-1.fc38)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/results/rdkit-2023.03.2-1.fc39.src.rpm) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1688587310.274239/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1688587310.274239/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 4.1 INFO: Mock Version: 4.1 INFO: Package manager dnf detected and used (fallback) Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1688587310.274239/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 4.1 INFO: Mock Version: 4.1 INFO: Package manager dnf detected and used (direct choice) Start: dnf update No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 48 kB/s | 1.5 kB 00:00 fedora 212 kB/s | 18 kB 00:00 Dependencies resolved. Nothing to do. Complete! Finish: dnf update Finish: chroot init Start: build phase for rdkit-2023.03.2-1.fc39.src.rpm Start: build setup for rdkit-2023.03.2-1.fc39.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1688342400 Wrote: /builddir/build/SRPMS/rdkit-2023.03.2-1.fc39.src.rpm No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 25 kB/s | 1.5 kB 00:00 fedora 60 kB/s | 18 kB 00:00 Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing: bison x86_64 3.8.2-4.fc38 fedora 1.0 M boost-devel x86_64 1.81.0-1.fc39 fedora 14 M cairo-devel x86_64 1.17.8-4.fc39 fedora 188 k catch2-devel x86_64 2.13.10-1.fc39 fedora 206 k chrpath x86_64 0.16-19.fc38 fedora 30 k cmake x86_64 3.27.0~rc4-1.fc39 fedora 8.0 M comic-neue-fonts noarch 2.51-6.fc38 fedora 147 k eigen3-devel noarch 3.4.0-10.fc39 fedora 1.2 M flex x86_64 2.6.4-12.fc38 fedora 313 k gcc-c++ x86_64 13.1.1-4.fc39 fedora 13 M inchi-devel x86_64 1.0.6-6.fc38 fedora 25 k junit noarch 1:4.13.2-1.fc39 fedora 347 k maeparser-devel x86_64 1.3.1-2.fc39 fedora 19 k make x86_64 1:4.4.1-1.fc39 fedora 589 k postgresql-server-devel x86_64 15.3-1.fc39 fedora 1.4 M python3-cairocffi noarch 1.5.1-1.fc39 fedora 167 k python3-devel x86_64 3.11.4-1.fc39 fedora 269 k python3-numpy x86_64 1:1.24.3-1.fc39 fedora 7.9 M python3-pandas x86_64 1.5.3-5.fc39 fedora 7.4 M python3-pillow x86_64 9.5.0-1.fc39 fedora 931 k xorg-x11-fonts-Type1 noarch 7.5-35.fc38 fedora 505 k Installing dependencies: adwaita-cursor-theme noarch 44.0-1.fc39 fedora 633 k adwaita-icon-theme noarch 44.0-1.fc39 fedora 1.1 M annobin-docs noarch 12.17-1.fc39 fedora 95 k annobin-plugin-gcc x86_64 12.17-1.fc39 fedora 896 k at-spi2-atk x86_64 2.48.3-1.fc39 fedora 86 k at-spi2-core x86_64 2.48.3-1.fc39 fedora 372 k atk x86_64 2.48.3-1.fc39 fedora 81 k avahi-libs x86_64 0.8-23.fc39 fedora 67 k boost x86_64 1.81.0-1.fc39 fedora 14 k boost-atomic x86_64 1.81.0-1.fc39 fedora 20 k boost-chrono x86_64 1.81.0-1.fc39 fedora 26 k boost-container x86_64 1.81.0-1.fc39 fedora 40 k boost-context x86_64 1.81.0-1.fc39 fedora 17 k boost-contract x86_64 1.81.0-1.fc39 fedora 46 k boost-coroutine x86_64 1.81.0-1.fc39 fedora 20 k boost-date-time x86_64 1.81.0-1.fc39 fedora 16 k boost-fiber x86_64 1.81.0-1.fc39 fedora 42 k boost-filesystem x86_64 1.81.0-1.fc39 fedora 66 k boost-graph x86_64 1.81.0-1.fc39 fedora 151 k boost-iostreams x86_64 1.81.0-1.fc39 fedora 42 k boost-json x86_64 1.81.0-1.fc39 fedora 110 k boost-locale x86_64 1.81.0-1.fc39 fedora 222 k boost-log x86_64 1.81.0-1.fc39 fedora 491 k boost-math x86_64 1.81.0-1.fc39 fedora 221 k boost-nowide x86_64 1.81.0-1.fc39 fedora 21 k boost-numpy3 x86_64 1.81.0-1.fc39 fedora 30 k boost-program-options x86_64 1.81.0-1.fc39 fedora 109 k boost-python3 x86_64 1.81.0-1.fc39 fedora 97 k boost-random x86_64 1.81.0-1.fc39 fedora 24 k boost-regex x86_64 1.81.0-1.fc39 fedora 111 k boost-serialization x86_64 1.81.0-1.fc39 fedora 136 k boost-stacktrace x86_64 1.81.0-1.fc39 fedora 31 k boost-system x86_64 1.81.0-1.fc39 fedora 16 k boost-test x86_64 1.81.0-1.fc39 fedora 239 k boost-thread x86_64 1.81.0-1.fc39 fedora 58 k boost-timer x86_64 1.81.0-1.fc39 fedora 24 k boost-type_erasure x86_64 1.81.0-1.fc39 fedora 33 k boost-wave x86_64 1.81.0-1.fc39 fedora 225 k brotli x86_64 1.0.9-11.fc38 fedora 316 k brotli-devel x86_64 1.0.9-11.fc38 fedora 31 k bzip2-devel x86_64 1.0.8-13.fc38 fedora 214 k cairo x86_64 1.17.8-4.fc39 fedora 706 k cairo-gobject x86_64 1.17.8-4.fc39 fedora 18 k cmake-data noarch 3.27.0~rc4-1.fc39 fedora 2.2 M cmake-filesystem x86_64 3.27.0~rc4-1.fc39 fedora 18 k cmake-rpm-macros noarch 3.27.0~rc4-1.fc39 fedora 17 k colord-libs x86_64 1.4.6-4.fc39 fedora 232 k comic-neue-fonts-common noarch 2.51-6.fc38 fedora 1.0 M copy-jdk-configs noarch 4.1-2.fc38 fedora 28 k cpp x86_64 13.1.1-4.fc39 fedora 11 M crypto-policies-scripts noarch 20230614-1.git5f3458e.fc39 fedora 116 k cups-libs x86_64 1:2.4.6-1.fc39 fedora 266 k dbus x86_64 1:1.14.8-1.fc39 fedora 8.0 k dbus-broker x86_64 33-1.fc38 fedora 173 k dbus-common noarch 1:1.14.8-1.fc39 fedora 15 k dbus-libs x86_64 1:1.14.8-1.fc39 fedora 156 k emacs-filesystem noarch 1:28.2-6.fc39 fedora 7.8 k expat x86_64 2.5.0-2.fc38 fedora 110 k flexiblas x86_64 3.3.1-3.fc39 fedora 33 k flexiblas-netlib x86_64 3.3.1-3.fc39 fedora 3.1 M flexiblas-openblas-openmp x86_64 3.3.1-3.fc39 fedora 17 k fontconfig x86_64 2.14.2-3.fc39 fedora 296 k fontconfig-devel x86_64 2.14.2-3.fc39 fedora 164 k fonts-filesystem noarch 1:2.0.5-11.fc38 fedora 8.1 k freetype x86_64 2.13.1-1.fc39 fedora 414 k freetype-devel x86_64 2.13.1-1.fc39 fedora 950 k fribidi x86_64 1.0.13-1.fc39 fedora 90 k gc x86_64 8.2.2-3.fc38 fedora 110 k gcc x86_64 13.1.1-4.fc39 fedora 34 M gcc-plugin-annobin x86_64 13.1.1-4.fc39 fedora 45 k gdk-pixbuf2 x86_64 2.42.10-2.fc38 fedora 485 k gdk-pixbuf2-modules x86_64 2.42.10-2.fc38 fedora 85 k gettext x86_64 0.22-1.fc39 fedora 1.1 M gettext-envsubst x86_64 0.22-1.fc39 fedora 36 k gettext-libs x86_64 0.22-1.fc39 fedora 327 k gettext-runtime x86_64 0.22-1.fc39 fedora 120 k glib2 x86_64 2.76.3-1.fc39 fedora 2.8 M glib2-devel x86_64 2.76.3-1.fc39 fedora 587 k glibc-devel x86_64 2.37.9000-15.fc39 fedora 79 k glibc-headers-x86 noarch 2.37.9000-15.fc39 fedora 559 k gnutls x86_64 3.8.0-6.fc39 fedora 1.1 M google-noto-fonts-common noarch 20230601-3.fc39 fedora 16 k google-noto-sans-vf-fonts noarch 20230601-3.fc39 fedora 582 k graphite2 x86_64 1.3.14-11.fc38 fedora 95 k graphite2-devel x86_64 1.3.14-11.fc38 fedora 20 k gtk-update-icon-cache x86_64 3.24.38-2.fc39 fedora 34 k gtk3 x86_64 3.24.38-2.fc39 fedora 4.8 M guile22 x86_64 2.2.7-8.fc39 fedora 6.5 M hamcrest noarch 2.2-10.fc39 fedora 120 k harfbuzz x86_64 7.3.0-1.fc39 fedora 912 k harfbuzz-devel x86_64 7.3.0-1.fc39 fedora 447 k harfbuzz-icu x86_64 7.3.0-1.fc39 fedora 16 k hicolor-icon-theme noarch 0.17-15.fc38 fedora 66 k inchi-libs x86_64 1.0.6-6.fc38 fedora 684 k java-1.8.0-openjdk-headless x86_64 1:1.8.0.362.b09-2.fc38 fedora 33 M javapackages-filesystem noarch 6.1.0-8.fc39 fedora 13 k jbigkit-libs x86_64 2.1-25.fc38 fedora 53 k json-glib x86_64 1.6.6-4.fc38 fedora 162 k jsoncpp x86_64 1.9.5-4.fc38 fedora 97 k kernel-headers x86_64 6.4.0-1.fc39 fedora 1.5 M keyutils-libs-devel x86_64 1.6.1-6.fc38 fedora 58 k krb5-devel x86_64 1.21-1.fc39 fedora 144 k langpacks-core-font-en noarch 3.0-35.fc39 fedora 9.9 k lcms2 x86_64 2.15-1.fc39 fedora 177 k libX11 x86_64 1.8.6-1.fc39 fedora 649 k libX11-common noarch 1.8.6-1.fc39 fedora 175 k libX11-devel x86_64 1.8.6-1.fc39 fedora 1.0 M libX11-xcb x86_64 1.8.6-1.fc39 fedora 11 k libXau x86_64 1.0.11-2.fc38 fedora 32 k libXau-devel x86_64 1.0.11-2.fc38 fedora 14 k libXcomposite x86_64 0.4.5-9.fc38 fedora 23 k libXcursor x86_64 1.2.1-3.fc38 fedora 30 k libXdamage x86_64 1.1.5-9.fc38 fedora 22 k libXext x86_64 1.3.5-2.fc38 fedora 39 k libXext-devel x86_64 1.3.5-2.fc38 fedora 85 k libXfixes x86_64 6.0.0-5.fc38 fedora 19 k libXft x86_64 2.3.8-2.fc39 fedora 72 k libXi x86_64 1.8.1-1.fc39 fedora 40 k libXinerama x86_64 1.1.5-2.fc38 fedora 14 k libXrandr x86_64 1.5.2-10.fc38 fedora 27 k libXrender x86_64 0.9.11-2.fc38 fedora 27 k libXrender-devel x86_64 0.9.11-2.fc38 fedora 19 k libXtst x86_64 1.2.4-2.fc38 fedora 20 k libb2 x86_64 0.98.1-8.fc38 fedora 25 k libblkid-devel x86_64 2.39.1-1.fc39 fedora 18 k libcloudproviders x86_64 0.3.1-7.fc38 fedora 44 k libcom_err-devel x86_64 1.47.0-1.fc39 fedora 16 k libdatrie x86_64 0.2.13-6.fc39 fedora 32 k libepoxy x86_64 1.5.10-3.fc38 fedora 237 k libffi-devel x86_64 3.4.4-2.fc38 fedora 29 k libfontenc x86_64 1.1.6-2.fc38 fedora 32 k libgfortran x86_64 13.1.1-4.fc39 fedora 896 k libgusb x86_64 0.4.6-1.fc39 fedora 63 k libicu x86_64 72.1-2.fc38 fedora 10 M libicu-devel x86_64 72.1-2.fc38 fedora 918 k libimagequant x86_64 4.0.1-4.fc39 fedora 302 k libjpeg-turbo x86_64 2.1.4-2.fc38 fedora 183 k libkadm5 x86_64 1.21-1.fc39 fedora 78 k libmount-devel x86_64 2.39.1-1.fc39 fedora 18 k libmpc x86_64 1.3.1-2.fc38 fedora 70 k libpng x86_64 2:1.6.37-14.fc38 fedora 120 k libpng-devel x86_64 2:1.6.37-14.fc38 fedora 291 k libquadmath x86_64 13.1.1-4.fc39 fedora 192 k libquadmath-devel x86_64 13.1.1-4.fc39 fedora 34 k libraqm x86_64 0.8.0-4.fc38 fedora 20 k libselinux-devel x86_64 3.5-1.fc39 fedora 151 k libsepol-devel x86_64 3.5-1.fc39 fedora 49 k libsoup3 x86_64 3.4.2-2.fc39 fedora 388 k libstdc++-devel x86_64 13.1.1-4.fc39 fedora 2.6 M libstemmer x86_64 2.2.0-5.fc38 fedora 168 k libthai x86_64 0.1.29-5.fc39 fedora 213 k libtiff x86_64 4.4.0-5.fc38 fedora 197 k libtool-ltdl x86_64 2.4.7-6.fc38 fedora 37 k libtracker-sparql x86_64 3.6~alpha-1.fc39 fedora 387 k libusb1 x86_64 1.0.26-2.fc39 fedora 74 k libuv x86_64 1:1.45.0-2.fc39 fedora 158 k libverto-devel x86_64 0.3.2-5.fc38 fedora 14 k libwayland-client x86_64 1.22.0-1.fc39 fedora 33 k libwayland-cursor x86_64 1.22.0-1.fc39 fedora 19 k libwayland-egl x86_64 1.22.0-1.fc39 fedora 13 k libwebp x86_64 1.3.1-1.fc39 fedora 283 k libxcb x86_64 1.13.1-11.fc38 fedora 231 k libxcb-devel x86_64 1.13.1-11.fc38 fedora 1.4 M libxcrypt-devel x86_64 4.4.35-1.fc39 fedora 30 k libxkbcommon x86_64 1.5.0-2.fc39 fedora 139 k libxml2-devel x86_64 2.10.4-1.fc39 fedora 531 k lksctp-tools x86_64 1.0.19-3.fc38 fedora 92 k lua x86_64 5.4.4-9.fc39 fedora 190 k lua-posix x86_64 36.2.1-2.fc39 fedora 140 k m4 x86_64 1.4.19-4.fc37 fedora 303 k maeparser x86_64 1.3.1-2.fc39 fedora 109 k mkfontscale x86_64 1.2.2-3.fc38 fedora 32 k mpdecimal x86_64 2.5.1-6.fc38 fedora 89 k nettle x86_64 3.9.1-1.fc39 fedora 425 k nspr x86_64 4.35.0-8.fc39 fedora 137 k nss x86_64 3.90.0-2.fc39 fedora 695 k nss-softokn x86_64 3.90.0-2.fc39 fedora 1.0 M nss-softokn-freebl x86_64 3.90.0-2.fc39 fedora 322 k nss-sysinit x86_64 3.90.0-2.fc39 fedora 18 k nss-util x86_64 3.90.0-2.fc39 fedora 86 k openblas x86_64 0.3.21-4.fc38 fedora 35 k openblas-openmp x86_64 0.3.21-4.fc38 fedora 5.1 M openjpeg2 x86_64 2.5.0-3.fc38 fedora 178 k openssl-devel x86_64 1:3.0.8-2.fc39 fedora 2.6 M pango x86_64 1.50.14-1.fc39 fedora 342 k pcre2-devel x86_64 10.42-1.fc38.1 fedora 506 k pcre2-utf16 x86_64 10.42-1.fc38.1 fedora 214 k pcre2-utf32 x86_64 10.42-1.fc38.1 fedora 201 k pixman x86_64 0.42.2-1.fc39 fedora 284 k pixman-devel x86_64 0.42.2-1.fc39 fedora 17 k postgresql-private-devel x86_64 15.3-1.fc39 fedora 64 k postgresql-private-libs x86_64 15.3-1.fc39 fedora 141 k pyproject-rpm-macros noarch 1.9.0-1.fc39 fedora 42 k python-pip-wheel noarch 23.1.2-1.fc39 fedora 1.4 M python-rpm-macros noarch 3.11-10.fc39 fedora 20 k python-setuptools-wheel noarch 67.7.2-2.fc39 fedora 661 k python3 x86_64 3.11.4-1.fc39 fedora 28 k python3-Bottleneck x86_64 1.3.7-1.fc39 fedora 181 k python3-cffi x86_64 1.15.1-4.fc38 fedora 311 k python3-dateutil noarch 1:2.8.2-6.fc39 fedora 360 k python3-libs x86_64 3.11.4-1.fc39 fedora 9.6 M python3-numexpr x86_64 2.8.4-1.fc38 fedora 168 k python3-numpy-f2py x86_64 1:1.24.3-1.fc39 fedora 499 k python3-olefile noarch 0.46-19.fc38 fedora 67 k python3-packaging noarch 23.1-1.fc39 fedora 117 k python3-ply noarch 3.11-18.fc38 fedora 139 k python3-pycparser noarch 2.20-9.fc38 fedora 156 k python3-pytz noarch 2023.3-1.fc39 fedora 65 k python3-rpm-generators noarch 14-6.fc39 fedora 30 k python3-rpm-macros noarch 3.11-10.fc39 fedora 15 k python3-scipy x86_64 1.10.1-2.fc39 fedora 21 M python3-six noarch 1.16.0-9.fc38 fedora 42 k rhash x86_64 1.4.3-2.fc38 fedora 194 k shared-mime-info x86_64 2.2-3.fc38 fedora 381 k sysprof-capture-devel x86_64 3.48.0-1.fc39 fedora 58 k ttmkfdir x86_64 3.0.9-67.fc38 fedora 54 k tzdata-java noarch 2023c-1.fc39 fedora 208 k vim-filesystem noarch 2:9.0.1671-1.fc39 fedora 18 k xkeyboard-config noarch 2.39-1.fc39 fedora 962 k xml-common noarch 0.6.3-60.fc38 fedora 31 k xorg-x11-proto-devel noarch 2023.2-1.fc39 fedora 297 k xprop x86_64 1.2.5-3.fc38 fedora 35 k xz-devel x86_64 5.4.3-1.fc39 fedora 66 k zlib-devel x86_64 1.2.13-3.fc38 fedora 45 k Transaction Summary ================================================================================ Install 245 Packages Total download size: 250 M Installed size: 1.0 G Downloading Packages: (1/245): annobin-docs-12.17-1.fc39.noarch.rpm 3.3 MB/s | 95 kB 00:00 (2/245): adwaita-cursor-theme-44.0-1.fc39.noarc 18 MB/s | 633 kB 00:00 (3/245): annobin-plugin-gcc-12.17-1.fc39.x86_64 142 MB/s | 896 kB 00:00 (4/245): at-spi2-atk-2.48.3-1.fc39.x86_64.rpm 29 MB/s | 86 kB 00:00 (5/245): at-spi2-core-2.48.3-1.fc39.x86_64.rpm 80 MB/s | 372 kB 00:00 (6/245): adwaita-icon-theme-44.0-1.fc39.noarch. 25 MB/s | 1.1 MB 00:00 (7/245): atk-2.48.3-1.fc39.x86_64.rpm 13 MB/s | 81 kB 00:00 (8/245): avahi-libs-0.8-23.fc39.x86_64.rpm 24 MB/s | 67 kB 00:00 (9/245): boost-1.81.0-1.fc39.x86_64.rpm 3.2 MB/s | 14 kB 00:00 (10/245): boost-atomic-1.81.0-1.fc39.x86_64.rpm 4.2 MB/s | 20 kB 00:00 (11/245): bison-3.8.2-4.fc38.x86_64.rpm 108 MB/s | 1.0 MB 00:00 (12/245): boost-container-1.81.0-1.fc39.x86_64. 2.5 MB/s | 40 kB 00:00 (13/245): boost-context-1.81.0-1.fc39.x86_64.rp 1.2 MB/s | 17 kB 00:00 (14/245): boost-chrono-1.81.0-1.fc39.x86_64.rpm 1.3 MB/s | 26 kB 00:00 (15/245): boost-contract-1.81.0-1.fc39.x86_64.r 17 MB/s | 46 kB 00:00 (16/245): boost-date-time-1.81.0-1.fc39.x86_64. 1.1 MB/s | 16 kB 00:00 (17/245): boost-coroutine-1.81.0-1.fc39.x86_64. 1.2 MB/s | 20 kB 00:00 (18/245): boost-fiber-1.81.0-1.fc39.x86_64.rpm 11 MB/s | 42 kB 00:00 (19/245): boost-filesystem-1.81.0-1.fc39.x86_64 9.1 MB/s | 66 kB 00:00 (20/245): boost-iostreams-1.81.0-1.fc39.x86_64. 3.7 MB/s | 42 kB 00:00 (21/245): boost-graph-1.81.0-1.fc39.x86_64.rpm 8.6 MB/s | 151 kB 00:00 (22/245): boost-json-1.81.0-1.fc39.x86_64.rpm 5.0 MB/s | 110 kB 00:00 (23/245): boost-locale-1.81.0-1.fc39.x86_64.rpm 9.9 MB/s | 222 kB 00:00 (24/245): boost-devel-1.81.0-1.fc39.x86_64.rpm 186 MB/s | 14 MB 00:00 (25/245): boost-log-1.81.0-1.fc39.x86_64.rpm 23 MB/s | 491 kB 00:00 (26/245): boost-nowide-1.81.0-1.fc39.x86_64.rpm 7.8 MB/s | 21 kB 00:00 (27/245): boost-program-options-1.81.0-1.fc39.x 35 MB/s | 109 kB 00:00 (28/245): boost-math-1.81.0-1.fc39.x86_64.rpm 9.4 MB/s | 221 kB 00:00 (29/245): boost-python3-1.81.0-1.fc39.x86_64.rp 31 MB/s | 97 kB 00:00 (30/245): boost-random-1.81.0-1.fc39.x86_64.rpm 5.2 MB/s | 24 kB 00:00 (31/245): boost-numpy3-1.81.0-1.fc39.x86_64.rpm 2.4 MB/s | 30 kB 00:00 (32/245): boost-regex-1.81.0-1.fc39.x86_64.rpm 31 MB/s | 111 kB 00:00 (33/245): boost-system-1.81.0-1.fc39.x86_64.rpm 2.8 MB/s | 16 kB 00:00 (34/245): boost-stacktrace-1.81.0-1.fc39.x86_64 3.2 MB/s | 31 kB 00:00 (35/245): boost-serialization-1.81.0-1.fc39.x86 9.3 MB/s | 136 kB 00:00 (36/245): boost-timer-1.81.0-1.fc39.x86_64.rpm 5.1 MB/s | 24 kB 00:00 (37/245): boost-thread-1.81.0-1.fc39.x86_64.rpm 4.6 MB/s | 58 kB 00:00 (38/245): boost-test-1.81.0-1.fc39.x86_64.rpm 14 MB/s | 239 kB 00:00 (39/245): brotli-1.0.9-11.fc38.x86_64.rpm 83 MB/s | 316 kB 00:00 (40/245): brotli-devel-1.0.9-11.fc38.x86_64.rpm 8.0 MB/s | 31 kB 00:00 (41/245): boost-wave-1.81.0-1.fc39.x86_64.rpm 23 MB/s | 225 kB 00:00 (42/245): boost-type_erasure-1.81.0-1.fc39.x86_ 2.4 MB/s | 33 kB 00:00 (43/245): bzip2-devel-1.0.8-13.fc38.x86_64.rpm 35 MB/s | 214 kB 00:00 (44/245): cairo-devel-1.17.8-4.fc39.x86_64.rpm 31 MB/s | 188 kB 00:00 (45/245): cairo-1.17.8-4.fc39.x86_64.rpm 72 MB/s | 706 kB 00:00 (46/245): cairo-gobject-1.17.8-4.fc39.x86_64.rp 2.3 MB/s | 18 kB 00:00 (47/245): catch2-devel-2.13.10-1.fc39.x86_64.rp 26 MB/s | 206 kB 00:00 (48/245): chrpath-0.16-19.fc38.x86_64.rpm 3.5 MB/s | 30 kB 00:00 (49/245): cmake-filesystem-3.27.0~rc4-1.fc39.x8 2.4 MB/s | 18 kB 00:00 (50/245): cmake-rpm-macros-3.27.0~rc4-1.fc39.no 1.1 MB/s | 17 kB 00:00 (51/245): cmake-data-3.27.0~rc4-1.fc39.noarch.r 70 MB/s | 2.2 MB 00:00 (52/245): colord-libs-1.4.6-4.fc39.x86_64.rpm 11 MB/s | 232 kB 00:00 (53/245): comic-neue-fonts-common-2.51-6.fc38.n 104 MB/s | 1.0 MB 00:00 (54/245): comic-neue-fonts-2.51-6.fc38.noarch.r 5.9 MB/s | 147 kB 00:00 (55/245): copy-jdk-configs-4.1-2.fc38.noarch.rp 3.9 MB/s | 28 kB 00:00 (56/245): crypto-policies-scripts-20230614-1.gi 7.3 MB/s | 116 kB 00:00 (57/245): cmake-3.27.0~rc4-1.fc39.x86_64.rpm 70 MB/s | 8.0 MB 00:00 (58/245): cups-libs-2.4.6-1.fc39.x86_64.rpm 7.2 MB/s | 266 kB 00:00 (59/245): cpp-13.1.1-4.fc39.x86_64.rpm 135 MB/s | 11 MB 00:00 (60/245): dbus-1.14.8-1.fc39.x86_64.rpm 365 kB/s | 8.0 kB 00:00 (61/245): dbus-broker-33-1.fc38.x86_64.rpm 7.9 MB/s | 173 kB 00:00 (62/245): dbus-common-1.14.8-1.fc39.noarch.rpm 1.4 MB/s | 15 kB 00:00 (63/245): dbus-libs-1.14.8-1.fc39.x86_64.rpm 15 MB/s | 156 kB 00:00 (64/245): expat-2.5.0-2.fc38.x86_64.rpm 19 MB/s | 110 kB 00:00 (65/245): eigen3-devel-3.4.0-10.fc39.noarch.rpm 66 MB/s | 1.2 MB 00:00 (66/245): emacs-filesystem-28.2-6.fc39.noarch.r 910 kB/s | 7.8 kB 00:00 (67/245): flexiblas-3.3.1-3.fc39.x86_64.rpm 10 MB/s | 33 kB 00:00 (68/245): flex-2.6.4-12.fc38.x86_64.rpm 38 MB/s | 313 kB 00:00 (69/245): flexiblas-openblas-openmp-3.3.1-3.fc3 5.0 MB/s | 17 kB 00:00 (70/245): fontconfig-devel-2.14.2-3.fc39.x86_64 40 MB/s | 164 kB 00:00 (71/245): fontconfig-2.14.2-3.fc39.x86_64.rpm 41 MB/s | 296 kB 00:00 (72/245): fonts-filesystem-2.0.5-11.fc38.noarch 1.5 MB/s | 8.1 kB 00:00 (73/245): freetype-devel-2.13.1-1.fc39.x86_64.r 56 MB/s | 950 kB 00:00 (74/245): freetype-2.13.1-1.fc39.x86_64.rpm 19 MB/s | 414 kB 00:00 (75/245): fribidi-1.0.13-1.fc39.x86_64.rpm 30 MB/s | 90 kB 00:00 (76/245): gc-8.2.2-3.fc38.x86_64.rpm 40 MB/s | 110 kB 00:00 (77/245): gcc-c++-13.1.1-4.fc39.x86_64.rpm 123 MB/s | 13 MB 00:00 (78/245): gcc-plugin-annobin-13.1.1-4.fc39.x86_ 2.3 MB/s | 45 kB 00:00 (79/245): gdk-pixbuf2-2.42.10-2.fc38.x86_64.rpm 20 MB/s | 485 kB 00:00 (80/245): gcc-13.1.1-4.fc39.x86_64.rpm 167 MB/s | 34 MB 00:00 (81/245): flexiblas-netlib-3.3.1-3.fc39.x86_64. 13 MB/s | 3.1 MB 00:00 (82/245): gdk-pixbuf2-modules-2.42.10-2.fc38.x8 1.8 MB/s | 85 kB 00:00 (83/245): gettext-envsubst-0.22-1.fc39.x86_64.r 14 MB/s | 36 kB 00:00 (84/245): gettext-libs-0.22-1.fc39.x86_64.rpm 76 MB/s | 327 kB 00:00 (85/245): gettext-runtime-0.22-1.fc39.x86_64.rp 36 MB/s | 120 kB 00:00 (86/245): glib2-2.76.3-1.fc39.x86_64.rpm 245 MB/s | 2.8 MB 00:00 (87/245): glib2-devel-2.76.3-1.fc39.x86_64.rpm 51 MB/s | 587 kB 00:00 (88/245): glibc-devel-2.37.9000-15.fc39.x86_64. 27 MB/s | 79 kB 00:00 (89/245): glibc-headers-x86-2.37.9000-15.fc39.n 114 MB/s | 559 kB 00:00 (90/245): gettext-0.22-1.fc39.x86_64.rpm 36 MB/s | 1.1 MB 00:00 (91/245): gnutls-3.8.0-6.fc39.x86_64.rpm 92 MB/s | 1.1 MB 00:00 (92/245): google-noto-fonts-common-20230601-3.f 1.7 MB/s | 16 kB 00:00 (93/245): google-noto-sans-vf-fonts-20230601-3. 64 MB/s | 582 kB 00:00 (94/245): graphite2-1.3.14-11.fc38.x86_64.rpm 29 MB/s | 95 kB 00:00 (95/245): graphite2-devel-1.3.14-11.fc38.x86_64 5.6 MB/s | 20 kB 00:00 (96/245): gtk-update-icon-cache-3.24.38-2.fc39. 8.2 MB/s | 34 kB 00:00 (97/245): hamcrest-2.2-10.fc39.noarch.rpm 19 MB/s | 120 kB 00:00 (98/245): guile22-2.2.7-8.fc39.x86_64.rpm 181 MB/s | 6.5 MB 00:00 (99/245): harfbuzz-7.3.0-1.fc39.x86_64.rpm 34 MB/s | 912 kB 00:00 (100/245): gtk3-3.24.38-2.fc39.x86_64.rpm 105 MB/s | 4.8 MB 00:00 (101/245): harfbuzz-devel-7.3.0-1.fc39.x86_64.r 51 MB/s | 447 kB 00:00 (102/245): harfbuzz-icu-7.3.0-1.fc39.x86_64.rpm 2.2 MB/s | 16 kB 00:00 (103/245): hicolor-icon-theme-0.17-15.fc38.noar 20 MB/s | 66 kB 00:00 (104/245): inchi-devel-1.0.6-6.fc38.x86_64.rpm 9.7 MB/s | 25 kB 00:00 (105/245): inchi-libs-1.0.6-6.fc38.x86_64.rpm 107 MB/s | 684 kB 00:00 (106/245): javapackages-filesystem-6.1.0-8.fc39 3.0 MB/s | 13 kB 00:00 (107/245): jbigkit-libs-2.1-25.fc38.x86_64.rpm 25 MB/s | 53 kB 00:00 (108/245): json-glib-1.6.6-4.fc38.x86_64.rpm 43 MB/s | 162 kB 00:00 (109/245): jsoncpp-1.9.5-4.fc38.x86_64.rpm 26 MB/s | 97 kB 00:00 (110/245): junit-4.13.2-1.fc39.noarch.rpm 86 MB/s | 347 kB 00:00 (111/245): keyutils-libs-devel-1.6.1-6.fc38.x86 14 MB/s | 58 kB 00:00 (112/245): kernel-headers-6.4.0-1.fc39.x86_64.r 132 MB/s | 1.5 MB 00:00 (113/245): krb5-devel-1.21-1.fc39.x86_64.rpm 24 MB/s | 144 kB 00:00 (114/245): langpacks-core-font-en-3.0-35.fc39.n 2.6 MB/s | 9.9 kB 00:00 (115/245): lcms2-2.15-1.fc39.x86_64.rpm 42 MB/s | 177 kB 00:00 (116/245): libX11-1.8.6-1.fc39.x86_64.rpm 92 MB/s | 649 kB 00:00 (117/245): libX11-common-1.8.6-1.fc39.noarch.rp 30 MB/s | 175 kB 00:00 (118/245): libX11-xcb-1.8.6-1.fc39.x86_64.rpm 2.8 MB/s | 11 kB 00:00 (119/245): libXau-1.0.11-2.fc38.x86_64.rpm 11 MB/s | 32 kB 00:00 (120/245): libXau-devel-1.0.11-2.fc38.x86_64.rp 2.5 MB/s | 14 kB 00:00 (121/245): libXcomposite-0.4.5-9.fc38.x86_64.rp 8.3 MB/s | 23 kB 00:00 (122/245): libXcursor-1.2.1-3.fc38.x86_64.rpm 10 MB/s | 30 kB 00:00 (123/245): libXdamage-1.1.5-9.fc38.x86_64.rpm 4.7 MB/s | 22 kB 00:00 (124/245): libX11-devel-1.8.6-1.fc39.x86_64.rpm 33 MB/s | 1.0 MB 00:00 (125/245): 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Running transaction test Transaction test succeeded. Running transaction Running scriptlet: copy-jdk-configs-4.1-2.fc38.noarch 1/1 Running scriptlet: java-1.8.0-openjdk-headless-1:1.8.0.362.b09-2.fc38.x 1/1 Preparing : 1/1 Installing : boost-system-1.81.0-1.fc39.x86_64 1/245 Installing : libicu-72.1-2.fc38.x86_64 2/245 Installing : boost-chrono-1.81.0-1.fc39.x86_64 3/245 Installing : boost-thread-1.81.0-1.fc39.x86_64 4/245 Installing : zlib-devel-1.2.13-3.fc38.x86_64 5/245 Installing : nspr-4.35.0-8.fc39.x86_64 6/245 Installing : cmake-filesystem-3.27.0~rc4-1.fc39.x86_64 7/245 Installing : nss-util-3.90.0-2.fc39.x86_64 8/245 Installing : xorg-x11-proto-devel-2023.2-1.fc39.noarch 9/245 Installing : libpng-2:1.6.37-14.fc38.x86_64 10/245 Installing : boost-regex-1.81.0-1.fc39.x86_64 11/245 Installing : libicu-devel-72.1-2.fc38.x86_64 12/245 Installing : python-rpm-macros-3.11-10.fc39.noarch 13/245 Installing : libmpc-1.3.1-2.fc38.x86_64 14/245 Installing : libjpeg-turbo-2.1.4-2.fc38.x86_64 15/245 Installing : 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libb2-0.98.1-8.fc38.x86_64 136/245 Verifying : libblkid-devel-2.39.1-1.fc39.x86_64 137/245 Verifying : libcloudproviders-0.3.1-7.fc38.x86_64 138/245 Verifying : libcom_err-devel-1.47.0-1.fc39.x86_64 139/245 Verifying : libdatrie-0.2.13-6.fc39.x86_64 140/245 Verifying : libepoxy-1.5.10-3.fc38.x86_64 141/245 Verifying : libffi-devel-3.4.4-2.fc38.x86_64 142/245 Verifying : libfontenc-1.1.6-2.fc38.x86_64 143/245 Verifying : libgfortran-13.1.1-4.fc39.x86_64 144/245 Verifying : libgusb-0.4.6-1.fc39.x86_64 145/245 Verifying : libicu-72.1-2.fc38.x86_64 146/245 Verifying : libicu-devel-72.1-2.fc38.x86_64 147/245 Verifying : libimagequant-4.0.1-4.fc39.x86_64 148/245 Verifying : libjpeg-turbo-2.1.4-2.fc38.x86_64 149/245 Verifying : libkadm5-1.21-1.fc39.x86_64 150/245 Verifying : libmount-devel-2.39.1-1.fc39.x86_64 151/245 Verifying : libmpc-1.3.1-2.fc38.x86_64 152/245 Verifying : libpng-2:1.6.37-14.fc38.x86_64 153/245 Verifying : libpng-devel-2:1.6.37-14.fc38.x86_64 154/245 Verifying : libquadmath-13.1.1-4.fc39.x86_64 155/245 Verifying : libquadmath-devel-13.1.1-4.fc39.x86_64 156/245 Verifying : libraqm-0.8.0-4.fc38.x86_64 157/245 Verifying : libselinux-devel-3.5-1.fc39.x86_64 158/245 Verifying : libsepol-devel-3.5-1.fc39.x86_64 159/245 Verifying : libsoup3-3.4.2-2.fc39.x86_64 160/245 Verifying : libstdc++-devel-13.1.1-4.fc39.x86_64 161/245 Verifying : libstemmer-2.2.0-5.fc38.x86_64 162/245 Verifying : libthai-0.1.29-5.fc39.x86_64 163/245 Verifying : libtiff-4.4.0-5.fc38.x86_64 164/245 Verifying : libtool-ltdl-2.4.7-6.fc38.x86_64 165/245 Verifying : libtracker-sparql-3.6~alpha-1.fc39.x86_64 166/245 Verifying : libusb1-1.0.26-2.fc39.x86_64 167/245 Verifying : libuv-1:1.45.0-2.fc39.x86_64 168/245 Verifying : libverto-devel-0.3.2-5.fc38.x86_64 169/245 Verifying : libwayland-client-1.22.0-1.fc39.x86_64 170/245 Verifying : libwayland-cursor-1.22.0-1.fc39.x86_64 171/245 Verifying : libwayland-egl-1.22.0-1.fc39.x86_64 172/245 Verifying : libwebp-1.3.1-1.fc39.x86_64 173/245 Verifying : libxcb-1.13.1-11.fc38.x86_64 174/245 Verifying : libxcb-devel-1.13.1-11.fc38.x86_64 175/245 Verifying : libxcrypt-devel-4.4.35-1.fc39.x86_64 176/245 Verifying : libxkbcommon-1.5.0-2.fc39.x86_64 177/245 Verifying : libxml2-devel-2.10.4-1.fc39.x86_64 178/245 Verifying : lksctp-tools-1.0.19-3.fc38.x86_64 179/245 Verifying : lua-5.4.4-9.fc39.x86_64 180/245 Verifying : lua-posix-36.2.1-2.fc39.x86_64 181/245 Verifying : m4-1.4.19-4.fc37.x86_64 182/245 Verifying : maeparser-1.3.1-2.fc39.x86_64 183/245 Verifying : maeparser-devel-1.3.1-2.fc39.x86_64 184/245 Verifying : make-1:4.4.1-1.fc39.x86_64 185/245 Verifying : mkfontscale-1.2.2-3.fc38.x86_64 186/245 Verifying : mpdecimal-2.5.1-6.fc38.x86_64 187/245 Verifying : nettle-3.9.1-1.fc39.x86_64 188/245 Verifying : nspr-4.35.0-8.fc39.x86_64 189/245 Verifying : nss-3.90.0-2.fc39.x86_64 190/245 Verifying : nss-softokn-3.90.0-2.fc39.x86_64 191/245 Verifying : nss-softokn-freebl-3.90.0-2.fc39.x86_64 192/245 Verifying : nss-sysinit-3.90.0-2.fc39.x86_64 193/245 Verifying : nss-util-3.90.0-2.fc39.x86_64 194/245 Verifying : openblas-0.3.21-4.fc38.x86_64 195/245 Verifying : openblas-openmp-0.3.21-4.fc38.x86_64 196/245 Verifying : openjpeg2-2.5.0-3.fc38.x86_64 197/245 Verifying : openssl-devel-1:3.0.8-2.fc39.x86_64 198/245 Verifying : pango-1.50.14-1.fc39.x86_64 199/245 Verifying : pcre2-devel-10.42-1.fc38.1.x86_64 200/245 Verifying : pcre2-utf16-10.42-1.fc38.1.x86_64 201/245 Verifying : pcre2-utf32-10.42-1.fc38.1.x86_64 202/245 Verifying : pixman-0.42.2-1.fc39.x86_64 203/245 Verifying : pixman-devel-0.42.2-1.fc39.x86_64 204/245 Verifying : postgresql-private-devel-15.3-1.fc39.x86_64 205/245 Verifying : postgresql-private-libs-15.3-1.fc39.x86_64 206/245 Verifying : postgresql-server-devel-15.3-1.fc39.x86_64 207/245 Verifying : pyproject-rpm-macros-1.9.0-1.fc39.noarch 208/245 Verifying : python-pip-wheel-23.1.2-1.fc39.noarch 209/245 Verifying : python-rpm-macros-3.11-10.fc39.noarch 210/245 Verifying : python-setuptools-wheel-67.7.2-2.fc39.noarch 211/245 Verifying : python3-3.11.4-1.fc39.x86_64 212/245 Verifying : python3-Bottleneck-1.3.7-1.fc39.x86_64 213/245 Verifying : python3-cairocffi-1.5.1-1.fc39.noarch 214/245 Verifying : python3-cffi-1.15.1-4.fc38.x86_64 215/245 Verifying : python3-dateutil-1:2.8.2-6.fc39.noarch 216/245 Verifying : python3-devel-3.11.4-1.fc39.x86_64 217/245 Verifying : python3-libs-3.11.4-1.fc39.x86_64 218/245 Verifying : python3-numexpr-2.8.4-1.fc38.x86_64 219/245 Verifying : python3-numpy-1:1.24.3-1.fc39.x86_64 220/245 Verifying : python3-numpy-f2py-1:1.24.3-1.fc39.x86_64 221/245 Verifying : python3-olefile-0.46-19.fc38.noarch 222/245 Verifying : python3-packaging-23.1-1.fc39.noarch 223/245 Verifying : python3-pandas-1.5.3-5.fc39.x86_64 224/245 Verifying : python3-pillow-9.5.0-1.fc39.x86_64 225/245 Verifying : python3-ply-3.11-18.fc38.noarch 226/245 Verifying : python3-pycparser-2.20-9.fc38.noarch 227/245 Verifying : python3-pytz-2023.3-1.fc39.noarch 228/245 Verifying : python3-rpm-generators-14-6.fc39.noarch 229/245 Verifying : python3-rpm-macros-3.11-10.fc39.noarch 230/245 Verifying : python3-scipy-1.10.1-2.fc39.x86_64 231/245 Verifying : python3-six-1.16.0-9.fc38.noarch 232/245 Verifying : rhash-1.4.3-2.fc38.x86_64 233/245 Verifying : shared-mime-info-2.2-3.fc38.x86_64 234/245 Verifying : sysprof-capture-devel-3.48.0-1.fc39.x86_64 235/245 Verifying : ttmkfdir-3.0.9-67.fc38.x86_64 236/245 Verifying : tzdata-java-2023c-1.fc39.noarch 237/245 Verifying : vim-filesystem-2:9.0.1671-1.fc39.noarch 238/245 Verifying : xkeyboard-config-2.39-1.fc39.noarch 239/245 Verifying : xml-common-0.6.3-60.fc38.noarch 240/245 Verifying : xorg-x11-fonts-Type1-7.5-35.fc38.noarch 241/245 Verifying : xorg-x11-proto-devel-2023.2-1.fc39.noarch 242/245 Verifying : xprop-1.2.5-3.fc38.x86_64 243/245 Verifying : xz-devel-5.4.3-1.fc39.x86_64 244/245 Verifying : zlib-devel-1.2.13-3.fc38.x86_64 245/245 Installed: adwaita-cursor-theme-44.0-1.fc39.noarch adwaita-icon-theme-44.0-1.fc39.noarch annobin-docs-12.17-1.fc39.noarch annobin-plugin-gcc-12.17-1.fc39.x86_64 at-spi2-atk-2.48.3-1.fc39.x86_64 at-spi2-core-2.48.3-1.fc39.x86_64 atk-2.48.3-1.fc39.x86_64 avahi-libs-0.8-23.fc39.x86_64 bison-3.8.2-4.fc38.x86_64 boost-1.81.0-1.fc39.x86_64 boost-atomic-1.81.0-1.fc39.x86_64 boost-chrono-1.81.0-1.fc39.x86_64 boost-container-1.81.0-1.fc39.x86_64 boost-context-1.81.0-1.fc39.x86_64 boost-contract-1.81.0-1.fc39.x86_64 boost-coroutine-1.81.0-1.fc39.x86_64 boost-date-time-1.81.0-1.fc39.x86_64 boost-devel-1.81.0-1.fc39.x86_64 boost-fiber-1.81.0-1.fc39.x86_64 boost-filesystem-1.81.0-1.fc39.x86_64 boost-graph-1.81.0-1.fc39.x86_64 boost-iostreams-1.81.0-1.fc39.x86_64 boost-json-1.81.0-1.fc39.x86_64 boost-locale-1.81.0-1.fc39.x86_64 boost-log-1.81.0-1.fc39.x86_64 boost-math-1.81.0-1.fc39.x86_64 boost-nowide-1.81.0-1.fc39.x86_64 boost-numpy3-1.81.0-1.fc39.x86_64 boost-program-options-1.81.0-1.fc39.x86_64 boost-python3-1.81.0-1.fc39.x86_64 boost-random-1.81.0-1.fc39.x86_64 boost-regex-1.81.0-1.fc39.x86_64 boost-serialization-1.81.0-1.fc39.x86_64 boost-stacktrace-1.81.0-1.fc39.x86_64 boost-system-1.81.0-1.fc39.x86_64 boost-test-1.81.0-1.fc39.x86_64 boost-thread-1.81.0-1.fc39.x86_64 boost-timer-1.81.0-1.fc39.x86_64 boost-type_erasure-1.81.0-1.fc39.x86_64 boost-wave-1.81.0-1.fc39.x86_64 brotli-1.0.9-11.fc38.x86_64 brotli-devel-1.0.9-11.fc38.x86_64 bzip2-devel-1.0.8-13.fc38.x86_64 cairo-1.17.8-4.fc39.x86_64 cairo-devel-1.17.8-4.fc39.x86_64 cairo-gobject-1.17.8-4.fc39.x86_64 catch2-devel-2.13.10-1.fc39.x86_64 chrpath-0.16-19.fc38.x86_64 cmake-3.27.0~rc4-1.fc39.x86_64 cmake-data-3.27.0~rc4-1.fc39.noarch cmake-filesystem-3.27.0~rc4-1.fc39.x86_64 cmake-rpm-macros-3.27.0~rc4-1.fc39.noarch colord-libs-1.4.6-4.fc39.x86_64 comic-neue-fonts-2.51-6.fc38.noarch comic-neue-fonts-common-2.51-6.fc38.noarch copy-jdk-configs-4.1-2.fc38.noarch cpp-13.1.1-4.fc39.x86_64 crypto-policies-scripts-20230614-1.git5f3458e.fc39.noarch cups-libs-1:2.4.6-1.fc39.x86_64 dbus-1:1.14.8-1.fc39.x86_64 dbus-broker-33-1.fc38.x86_64 dbus-common-1:1.14.8-1.fc39.noarch dbus-libs-1:1.14.8-1.fc39.x86_64 eigen3-devel-3.4.0-10.fc39.noarch emacs-filesystem-1:28.2-6.fc39.noarch expat-2.5.0-2.fc38.x86_64 flex-2.6.4-12.fc38.x86_64 flexiblas-3.3.1-3.fc39.x86_64 flexiblas-netlib-3.3.1-3.fc39.x86_64 flexiblas-openblas-openmp-3.3.1-3.fc39.x86_64 fontconfig-2.14.2-3.fc39.x86_64 fontconfig-devel-2.14.2-3.fc39.x86_64 fonts-filesystem-1:2.0.5-11.fc38.noarch freetype-2.13.1-1.fc39.x86_64 freetype-devel-2.13.1-1.fc39.x86_64 fribidi-1.0.13-1.fc39.x86_64 gc-8.2.2-3.fc38.x86_64 gcc-13.1.1-4.fc39.x86_64 gcc-c++-13.1.1-4.fc39.x86_64 gcc-plugin-annobin-13.1.1-4.fc39.x86_64 gdk-pixbuf2-2.42.10-2.fc38.x86_64 gdk-pixbuf2-modules-2.42.10-2.fc38.x86_64 gettext-0.22-1.fc39.x86_64 gettext-envsubst-0.22-1.fc39.x86_64 gettext-libs-0.22-1.fc39.x86_64 gettext-runtime-0.22-1.fc39.x86_64 glib2-2.76.3-1.fc39.x86_64 glib2-devel-2.76.3-1.fc39.x86_64 glibc-devel-2.37.9000-15.fc39.x86_64 glibc-headers-x86-2.37.9000-15.fc39.noarch gnutls-3.8.0-6.fc39.x86_64 google-noto-fonts-common-20230601-3.fc39.noarch google-noto-sans-vf-fonts-20230601-3.fc39.noarch graphite2-1.3.14-11.fc38.x86_64 graphite2-devel-1.3.14-11.fc38.x86_64 gtk-update-icon-cache-3.24.38-2.fc39.x86_64 gtk3-3.24.38-2.fc39.x86_64 guile22-2.2.7-8.fc39.x86_64 hamcrest-2.2-10.fc39.noarch harfbuzz-7.3.0-1.fc39.x86_64 harfbuzz-devel-7.3.0-1.fc39.x86_64 harfbuzz-icu-7.3.0-1.fc39.x86_64 hicolor-icon-theme-0.17-15.fc38.noarch inchi-devel-1.0.6-6.fc38.x86_64 inchi-libs-1.0.6-6.fc38.x86_64 java-1.8.0-openjdk-headless-1:1.8.0.362.b09-2.fc38.x86_64 javapackages-filesystem-6.1.0-8.fc39.noarch jbigkit-libs-2.1-25.fc38.x86_64 json-glib-1.6.6-4.fc38.x86_64 jsoncpp-1.9.5-4.fc38.x86_64 junit-1:4.13.2-1.fc39.noarch kernel-headers-6.4.0-1.fc39.x86_64 keyutils-libs-devel-1.6.1-6.fc38.x86_64 krb5-devel-1.21-1.fc39.x86_64 langpacks-core-font-en-3.0-35.fc39.noarch lcms2-2.15-1.fc39.x86_64 libX11-1.8.6-1.fc39.x86_64 libX11-common-1.8.6-1.fc39.noarch libX11-devel-1.8.6-1.fc39.x86_64 libX11-xcb-1.8.6-1.fc39.x86_64 libXau-1.0.11-2.fc38.x86_64 libXau-devel-1.0.11-2.fc38.x86_64 libXcomposite-0.4.5-9.fc38.x86_64 libXcursor-1.2.1-3.fc38.x86_64 libXdamage-1.1.5-9.fc38.x86_64 libXext-1.3.5-2.fc38.x86_64 libXext-devel-1.3.5-2.fc38.x86_64 libXfixes-6.0.0-5.fc38.x86_64 libXft-2.3.8-2.fc39.x86_64 libXi-1.8.1-1.fc39.x86_64 libXinerama-1.1.5-2.fc38.x86_64 libXrandr-1.5.2-10.fc38.x86_64 libXrender-0.9.11-2.fc38.x86_64 libXrender-devel-0.9.11-2.fc38.x86_64 libXtst-1.2.4-2.fc38.x86_64 libb2-0.98.1-8.fc38.x86_64 libblkid-devel-2.39.1-1.fc39.x86_64 libcloudproviders-0.3.1-7.fc38.x86_64 libcom_err-devel-1.47.0-1.fc39.x86_64 libdatrie-0.2.13-6.fc39.x86_64 libepoxy-1.5.10-3.fc38.x86_64 libffi-devel-3.4.4-2.fc38.x86_64 libfontenc-1.1.6-2.fc38.x86_64 libgfortran-13.1.1-4.fc39.x86_64 libgusb-0.4.6-1.fc39.x86_64 libicu-72.1-2.fc38.x86_64 libicu-devel-72.1-2.fc38.x86_64 libimagequant-4.0.1-4.fc39.x86_64 libjpeg-turbo-2.1.4-2.fc38.x86_64 libkadm5-1.21-1.fc39.x86_64 libmount-devel-2.39.1-1.fc39.x86_64 libmpc-1.3.1-2.fc38.x86_64 libpng-2:1.6.37-14.fc38.x86_64 libpng-devel-2:1.6.37-14.fc38.x86_64 libquadmath-13.1.1-4.fc39.x86_64 libquadmath-devel-13.1.1-4.fc39.x86_64 libraqm-0.8.0-4.fc38.x86_64 libselinux-devel-3.5-1.fc39.x86_64 libsepol-devel-3.5-1.fc39.x86_64 libsoup3-3.4.2-2.fc39.x86_64 libstdc++-devel-13.1.1-4.fc39.x86_64 libstemmer-2.2.0-5.fc38.x86_64 libthai-0.1.29-5.fc39.x86_64 libtiff-4.4.0-5.fc38.x86_64 libtool-ltdl-2.4.7-6.fc38.x86_64 libtracker-sparql-3.6~alpha-1.fc39.x86_64 libusb1-1.0.26-2.fc39.x86_64 libuv-1:1.45.0-2.fc39.x86_64 libverto-devel-0.3.2-5.fc38.x86_64 libwayland-client-1.22.0-1.fc39.x86_64 libwayland-cursor-1.22.0-1.fc39.x86_64 libwayland-egl-1.22.0-1.fc39.x86_64 libwebp-1.3.1-1.fc39.x86_64 libxcb-1.13.1-11.fc38.x86_64 libxcb-devel-1.13.1-11.fc38.x86_64 libxcrypt-devel-4.4.35-1.fc39.x86_64 libxkbcommon-1.5.0-2.fc39.x86_64 libxml2-devel-2.10.4-1.fc39.x86_64 lksctp-tools-1.0.19-3.fc38.x86_64 lua-5.4.4-9.fc39.x86_64 lua-posix-36.2.1-2.fc39.x86_64 m4-1.4.19-4.fc37.x86_64 maeparser-1.3.1-2.fc39.x86_64 maeparser-devel-1.3.1-2.fc39.x86_64 make-1:4.4.1-1.fc39.x86_64 mkfontscale-1.2.2-3.fc38.x86_64 mpdecimal-2.5.1-6.fc38.x86_64 nettle-3.9.1-1.fc39.x86_64 nspr-4.35.0-8.fc39.x86_64 nss-3.90.0-2.fc39.x86_64 nss-softokn-3.90.0-2.fc39.x86_64 nss-softokn-freebl-3.90.0-2.fc39.x86_64 nss-sysinit-3.90.0-2.fc39.x86_64 nss-util-3.90.0-2.fc39.x86_64 openblas-0.3.21-4.fc38.x86_64 openblas-openmp-0.3.21-4.fc38.x86_64 openjpeg2-2.5.0-3.fc38.x86_64 openssl-devel-1:3.0.8-2.fc39.x86_64 pango-1.50.14-1.fc39.x86_64 pcre2-devel-10.42-1.fc38.1.x86_64 pcre2-utf16-10.42-1.fc38.1.x86_64 pcre2-utf32-10.42-1.fc38.1.x86_64 pixman-0.42.2-1.fc39.x86_64 pixman-devel-0.42.2-1.fc39.x86_64 postgresql-private-devel-15.3-1.fc39.x86_64 postgresql-private-libs-15.3-1.fc39.x86_64 postgresql-server-devel-15.3-1.fc39.x86_64 pyproject-rpm-macros-1.9.0-1.fc39.noarch python-pip-wheel-23.1.2-1.fc39.noarch python-rpm-macros-3.11-10.fc39.noarch python-setuptools-wheel-67.7.2-2.fc39.noarch python3-3.11.4-1.fc39.x86_64 python3-Bottleneck-1.3.7-1.fc39.x86_64 python3-cairocffi-1.5.1-1.fc39.noarch python3-cffi-1.15.1-4.fc38.x86_64 python3-dateutil-1:2.8.2-6.fc39.noarch python3-devel-3.11.4-1.fc39.x86_64 python3-libs-3.11.4-1.fc39.x86_64 python3-numexpr-2.8.4-1.fc38.x86_64 python3-numpy-1:1.24.3-1.fc39.x86_64 python3-numpy-f2py-1:1.24.3-1.fc39.x86_64 python3-olefile-0.46-19.fc38.noarch python3-packaging-23.1-1.fc39.noarch python3-pandas-1.5.3-5.fc39.x86_64 python3-pillow-9.5.0-1.fc39.x86_64 python3-ply-3.11-18.fc38.noarch python3-pycparser-2.20-9.fc38.noarch python3-pytz-2023.3-1.fc39.noarch python3-rpm-generators-14-6.fc39.noarch python3-rpm-macros-3.11-10.fc39.noarch python3-scipy-1.10.1-2.fc39.x86_64 python3-six-1.16.0-9.fc38.noarch rhash-1.4.3-2.fc38.x86_64 shared-mime-info-2.2-3.fc38.x86_64 sysprof-capture-devel-3.48.0-1.fc39.x86_64 ttmkfdir-3.0.9-67.fc38.x86_64 tzdata-java-2023c-1.fc39.noarch vim-filesystem-2:9.0.1671-1.fc39.noarch xkeyboard-config-2.39-1.fc39.noarch xml-common-0.6.3-60.fc38.noarch xorg-x11-fonts-Type1-7.5-35.fc38.noarch xorg-x11-proto-devel-2023.2-1.fc39.noarch xprop-1.2.5-3.fc38.x86_64 xz-devel-5.4.3-1.fc39.x86_64 zlib-devel-1.2.13-3.fc38.x86_64 Complete! Finish: build setup for rdkit-2023.03.2-1.fc39.src.rpm Start: rpmbuild rdkit-2023.03.2-1.fc39.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1688342400 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.4hS30D + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf rdkit-Release_2023_03_2 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/rdkit-Release_2023_03_2.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd rdkit-Release_2023_03_2 + /usr/bin/mkdir -p SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . ++ find ./ -name '*.py' + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/utils/test_list.py ./rdkit/utils/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/utils/spiral.py ./rdkit/utils/spiral.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/utils/listutils.py ./rdkit/utils/listutils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/utils/fileutils.py ./rdkit/utils/fileutils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/utils/comhack.py ./rdkit/utils/comhack.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/utils/chemutils.py ./rdkit/utils/chemutils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/utils/chemdraw_qax.py ./rdkit/utils/chemdraw_qax.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/utils/chemdraw.py ./rdkit/utils/chemdraw.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/utils/cactvs.py ./rdkit/utils/cactvs.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/utils/__init__.py ./rdkit/utils/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/utils/UnitTestUtils.py ./rdkit/utils/UnitTestUtils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/test_list.py ./rdkit/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/utils.py ./rdkit/sping/utils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/util/__init__.py ./rdkit/sping/util/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/util/HTMLPiddler.py ./rdkit/sping/util/HTMLPiddler.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/tests/testallps.py ./rdkit/sping/tests/testallps.py: updating + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/tests/test_list.py ./rdkit/sping/tests/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/tests/pstests.py ./rdkit/sping/tests/pstests.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/tests/pidtest.py ./rdkit/sping/tests/pidtest.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/tests/__init__.py ./rdkit/sping/tests/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/test_list.py ./rdkit/sping/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/stringformat.py ./rdkit/sping/stringformat.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/pid.py ./rdkit/sping/pid.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/pagesizes.py ./rdkit/sping/pagesizes.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/examples/tkCanvasPIL-with-scrollbars.py ./rdkit/sping/examples/tkCanvasPIL-with-scrollbars.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/examples/tkCanvas-with-scrollbars.py ./rdkit/sping/examples/tkCanvas-with-scrollbars.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/examples/formatted-strings.py ./rdkit/sping/examples/formatted-strings.py: updating + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/colors.py ./rdkit/sping/colors.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/__init__.py ./rdkit/sping/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/WX/pidWxDc.py ./rdkit/sping/WX/pidWxDc.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/WX/pidWX.py ./rdkit/sping/WX/pidWX.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/WX/__init__.py ./rdkit/sping/WX/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/TK/pidTK.py ./rdkit/sping/TK/pidTK.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/TK/__init__.py ./rdkit/sping/TK/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/SVG/pidSVG.py ./rdkit/sping/SVG/pidSVG.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/SVG/__init__.py ./rdkit/sping/SVG/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/ReportLab/pidReportLab.py ./rdkit/sping/ReportLab/pidReportLab.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/ReportLab/__init__.py ./rdkit/sping/ReportLab/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/Qt/pidQt4.py ./rdkit/sping/Qt/pidQt4.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/Qt/pidQt.py ./rdkit/sping/Qt/pidQt.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/Qt/__init__.py ./rdkit/sping/Qt/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/Pyart/pidPyart.py ./rdkit/sping/Pyart/pidPyart.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/Pyart/__init__.py ./rdkit/sping/Pyart/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/Pyart/Fontmapping.py ./rdkit/sping/Pyart/Fontmapping.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/PS/psmetrics.py ./rdkit/sping/PS/psmetrics.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/PS/pidPS.py ./rdkit/sping/PS/pidPS.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/PS/latin1MetricsCache.py ./rdkit/sping/PS/latin1MetricsCache.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/PS/fontinfo.py ./rdkit/sping/PS/fontinfo.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/PS/__init__.py ./rdkit/sping/PS/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/PIL/pilfonts/removemedium.py ./rdkit/sping/PIL/pilfonts/removemedium.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/PIL/pidPIL.py ./rdkit/sping/PIL/pidPIL.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/PIL/__init__.py ./rdkit/sping/PIL/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/PDF/pidPDF.py ./rdkit/sping/PDF/pidPDF.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/PDF/pdfutils.py ./rdkit/sping/PDF/pdfutils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/PDF/pdfmetrics.py ./rdkit/sping/PDF/pdfmetrics.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/PDF/pdfgeom.py ./rdkit/sping/PDF/pdfgeom.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/PDF/pdfgen.py ./rdkit/sping/PDF/pdfgen.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/PDF/pdfdoc.py ./rdkit/sping/PDF/pdfdoc.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/sping/PDF/__init__.py ./rdkit/sping/PDF/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/six.py ./rdkit/six.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/__init__.py ./rdkit/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/test_list.py ./rdkit/VLib/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/__init__.py ./rdkit/VLib/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/UnitTestVLib.py ./rdkit/VLib/UnitTestVLib.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/Transform.py ./rdkit/VLib/Transform.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/Supply.py ./rdkit/VLib/Supply.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/Output.py ./rdkit/VLib/Output.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/NodeLib/test_list.py ./rdkit/VLib/NodeLib/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/NodeLib/demo.py ./rdkit/VLib/NodeLib/demo.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/NodeLib/__init__.py ./rdkit/VLib/NodeLib/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/NodeLib/UnitTestNodeLib.py ./rdkit/VLib/NodeLib/UnitTestNodeLib.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/NodeLib/SmilesSupply.py ./rdkit/VLib/NodeLib/SmilesSupply.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/NodeLib/SmilesOutput.py ./rdkit/VLib/NodeLib/SmilesOutput.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/NodeLib/SmilesDupeFilter.py ./rdkit/VLib/NodeLib/SmilesDupeFilter.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/NodeLib/SmartsRemover.py ./rdkit/VLib/NodeLib/SmartsRemover.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/NodeLib/SmartsMolFilter.py ./rdkit/VLib/NodeLib/SmartsMolFilter.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/NodeLib/SDSupply.py ./rdkit/VLib/NodeLib/SDSupply.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/NodeLib/DbPickleSupplier.py ./rdkit/VLib/NodeLib/DbPickleSupplier.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/NodeLib/DbMolSupply.py ./rdkit/VLib/NodeLib/DbMolSupply.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/Node.py ./rdkit/VLib/Node.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/VLib/Filter.py ./rdkit/VLib/Filter.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/UnitTestLogging.py ./rdkit/UnitTestLogging.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/TestRunner.py ./rdkit/TestRunner.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/SimDivFilters/test_list.py ./rdkit/SimDivFilters/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/SimDivFilters/test_data/genfps.py ./rdkit/SimDivFilters/test_data/genfps.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/SimDivFilters/__init__.py ./rdkit/SimDivFilters/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/SimDivFilters/UnitTestSimilarityPickers.py ./rdkit/SimDivFilters/UnitTestSimilarityPickers.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/SimDivFilters/SimilarityPickers.py ./rdkit/SimDivFilters/SimilarityPickers.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/RDRandom.py ./rdkit/RDRandom.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/RDLogger.py ./rdkit/RDLogger.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/RDConfig.py ./rdkit/RDConfig.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Numerics/__init__.py ./rdkit/Numerics/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/test_list.py ./rdkit/ML/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/test_data/populate.py ./rdkit/ML/test_data/populate.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/files.py ./rdkit/ML/files.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/__init__.py ./rdkit/ML/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/UnitTestScreenComposite.py ./rdkit/ML/UnitTestScreenComposite.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/UnitTestBuildComposite.py ./rdkit/ML/UnitTestBuildComposite.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/UnitTestAnalyzeComposite.py ./rdkit/ML/UnitTestAnalyzeComposite.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/ScreenComposite.py ./rdkit/ML/ScreenComposite.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Scoring/test_list.py ./rdkit/ML/Scoring/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Scoring/__init__.py ./rdkit/ML/Scoring/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Scoring/UnitTestScoring.py ./rdkit/ML/Scoring/UnitTestScoring.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Scoring/Scoring.py ./rdkit/ML/Scoring/Scoring.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/SLT/test_list.py ./rdkit/ML/SLT/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/SLT/__init__.py ./rdkit/ML/SLT/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/SLT/UnitTestRisk.py ./rdkit/ML/SLT/UnitTestRisk.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/SLT/Risk.py ./rdkit/ML/SLT/Risk.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Neural/test_list.py ./rdkit/ML/Neural/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Neural/__init__.py ./rdkit/ML/Neural/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Neural/UnitTestTrainer.py ./rdkit/ML/Neural/UnitTestTrainer.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Neural/UnitTestOther.py ./rdkit/ML/Neural/UnitTestOther.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Neural/Trainers.py ./rdkit/ML/Neural/Trainers.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Neural/Network.py ./rdkit/ML/Neural/Network.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Neural/NetNode.py ./rdkit/ML/Neural/NetNode.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Neural/CrossValidate.py ./rdkit/ML/Neural/CrossValidate.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Neural/ActFuncs.py ./rdkit/ML/Neural/ActFuncs.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/NaiveBayes/test_list.py ./rdkit/ML/NaiveBayes/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/NaiveBayes/__init__.py ./rdkit/ML/NaiveBayes/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/NaiveBayes/UnitTestNB.py ./rdkit/ML/NaiveBayes/UnitTestNB.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/NaiveBayes/CrossValidate.py ./rdkit/ML/NaiveBayes/CrossValidate.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/NaiveBayes/ClassificationModel.py ./rdkit/ML/NaiveBayes/ClassificationModel.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/ModelPackage/test_list.py ./rdkit/ML/ModelPackage/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/ModelPackage/__init__.py ./rdkit/ML/ModelPackage/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/ModelPackage/UnitTestPackage.py ./rdkit/ML/ModelPackage/UnitTestPackage.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/ModelPackage/Packager.py ./rdkit/ML/ModelPackage/Packager.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/ModelPackage/PackageUtils.py ./rdkit/ML/ModelPackage/PackageUtils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/MatOps.py ./rdkit/ML/MatOps.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/MLUtils/__init__.py ./rdkit/ML/MLUtils/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/MLUtils/VoteImg.py ./rdkit/ML/MLUtils/VoteImg.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/KNN/test_list.py ./rdkit/ML/KNN/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/KNN/__init__.py ./rdkit/ML/KNN/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/KNN/UnitTestKNN.py ./rdkit/ML/KNN/UnitTestKNN.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/KNN/KNNRegressionModel.py ./rdkit/ML/KNN/KNNRegressionModel.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/KNN/KNNModel.py ./rdkit/ML/KNN/KNNModel.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/KNN/KNNClassificationModel.py ./rdkit/ML/KNN/KNNClassificationModel.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/KNN/DistFunctions.py ./rdkit/ML/KNN/DistFunctions.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/KNN/CrossValidate.py ./rdkit/ML/KNN/CrossValidate.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/InfoTheory/test_list.py ./rdkit/ML/InfoTheory/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/InfoTheory/entropy.py ./rdkit/ML/InfoTheory/entropy.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/InfoTheory/__init__.py ./rdkit/ML/InfoTheory/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/InfoTheory/UnitTestCorrMatGen.py ./rdkit/ML/InfoTheory/UnitTestCorrMatGen.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/InfoTheory/UnitTestBitRanker.py ./rdkit/ML/InfoTheory/UnitTestBitRanker.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/InfoTheory/BitRank.py ./rdkit/ML/InfoTheory/BitRank.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/InfoTheory/BitClusterer.py ./rdkit/ML/InfoTheory/BitClusterer.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/GrowComposite.py ./rdkit/ML/GrowComposite.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/EnrichPlot.py ./rdkit/ML/EnrichPlot.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Descriptors/test_list.py ./rdkit/ML/Descriptors/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Descriptors/__init__.py ./rdkit/ML/Descriptors/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Descriptors/UnitTestParser.py ./rdkit/ML/Descriptors/UnitTestParser.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Descriptors/UnitTestMolDescriptors.py ./rdkit/ML/Descriptors/UnitTestMolDescriptors.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Descriptors/UnitTestDescriptors.py ./rdkit/ML/Descriptors/UnitTestDescriptors.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Descriptors/UnitTestCOMServer.py ./rdkit/ML/Descriptors/UnitTestCOMServer.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Descriptors/Parser.py ./rdkit/ML/Descriptors/Parser.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Descriptors/MoleculeDescriptors.py ./rdkit/ML/Descriptors/MoleculeDescriptors.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Descriptors/Descriptors.py ./rdkit/ML/Descriptors/Descriptors.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Descriptors/CompoundDescriptors.py ./rdkit/ML/Descriptors/CompoundDescriptors.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/test_list.py ./rdkit/ML/DecTree/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/randomtest.py ./rdkit/ML/DecTree/randomtest.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/__init__.py ./rdkit/ML/DecTree/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/UnitTestXVal.py ./rdkit/ML/DecTree/UnitTestXVal.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/UnitTestTreeUtils.py ./rdkit/ML/DecTree/UnitTestTreeUtils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/UnitTestTree.py ./rdkit/ML/DecTree/UnitTestTree.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/UnitTestSigTree.py ./rdkit/ML/DecTree/UnitTestSigTree.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/UnitTestQuantTree.py ./rdkit/ML/DecTree/UnitTestQuantTree.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/UnitTestPrune.py ./rdkit/ML/DecTree/UnitTestPrune.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/UnitTestID3.py ./rdkit/ML/DecTree/UnitTestID3.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/TreeVis.py ./rdkit/ML/DecTree/TreeVis.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/TreeUtils.py ./rdkit/ML/DecTree/TreeUtils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/Tree.py ./rdkit/ML/DecTree/Tree.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/SigTree.py ./rdkit/ML/DecTree/SigTree.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/QuantTree.py ./rdkit/ML/DecTree/QuantTree.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/PruneTree.py ./rdkit/ML/DecTree/PruneTree.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/ID3.py ./rdkit/ML/DecTree/ID3.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/Forest.py ./rdkit/ML/DecTree/Forest.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/DecTree.py ./rdkit/ML/DecTree/DecTree.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/CrossValidate.py ./rdkit/ML/DecTree/CrossValidate.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/BuildSigTree.py ./rdkit/ML/DecTree/BuildSigTree.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/DecTree/BuildQuantTree.py ./rdkit/ML/DecTree/BuildQuantTree.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Data/test_list.py ./rdkit/ML/Data/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Data/test_data/populate.py ./rdkit/ML/Data/test_data/populate.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Data/__init__.py ./rdkit/ML/Data/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Data/UnitTestStats.py ./rdkit/ML/Data/UnitTestStats.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Data/UnitTestQuantize.py ./rdkit/ML/Data/UnitTestQuantize.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Data/UnitTestMLData.py ./rdkit/ML/Data/UnitTestMLData.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Data/UnitTestFilter.py ./rdkit/ML/Data/UnitTestFilter.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Data/UnitTestDoctests.py ./rdkit/ML/Data/UnitTestDoctests.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Data/Transforms.py ./rdkit/ML/Data/Transforms.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Data/Stats.py ./rdkit/ML/Data/Stats.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Data/SplitData.py ./rdkit/ML/Data/SplitData.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Data/Quantize.py ./rdkit/ML/Data/Quantize.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Data/MLData.py ./rdkit/ML/Data/MLData.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Data/FindQuantBounds.py ./rdkit/ML/Data/FindQuantBounds.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Data/DataUtils.py ./rdkit/ML/Data/DataUtils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/CompositeRun.py ./rdkit/ML/CompositeRun.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Composite/test_list.py ./rdkit/ML/Composite/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Composite/__init__.py ./rdkit/ML/Composite/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Composite/UnitTestComposite.py ./rdkit/ML/Composite/UnitTestComposite.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Composite/UnitTestCOMServer.py ./rdkit/ML/Composite/UnitTestCOMServer.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Composite/Composite.py ./rdkit/ML/Composite/Composite.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Composite/BayesComposite.py ./rdkit/ML/Composite/BayesComposite.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Composite/AdjustComposite.py ./rdkit/ML/Composite/AdjustComposite.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Cluster/test_list.py ./rdkit/ML/Cluster/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Cluster/murtagh_test.py ./rdkit/ML/Cluster/murtagh_test.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Cluster/__init__.py ./rdkit/ML/Cluster/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Cluster/UnitTestCluster.py ./rdkit/ML/Cluster/UnitTestCluster.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Cluster/UnitTestButina.py ./rdkit/ML/Cluster/UnitTestButina.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Cluster/Standardize.py ./rdkit/ML/Cluster/Standardize.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Cluster/Resemblance.py ./rdkit/ML/Cluster/Resemblance.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Cluster/Murtagh.py ./rdkit/ML/Cluster/Murtagh.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Cluster/Clusters.py ./rdkit/ML/Cluster/Clusters.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Cluster/ClusterVis.py ./rdkit/ML/Cluster/ClusterVis.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Cluster/ClusterUtils.py ./rdkit/ML/Cluster/ClusterUtils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/Cluster/Butina.py ./rdkit/ML/Cluster/Butina.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/BuildComposite.py ./rdkit/ML/BuildComposite.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ML/AnalyzeComposite.py ./rdkit/ML/AnalyzeComposite.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Geometry/__init__.py ./rdkit/Geometry/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/ForceField/__init__.py ./rdkit/ForceField/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/DistanceGeometry/__init__.py ./rdkit/DistanceGeometry/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Dbase/test_list.py ./rdkit/Dbase/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Dbase/__init__.py ./rdkit/Dbase/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Dbase/UnitTestStorageUtils.py ./rdkit/Dbase/UnitTestStorageUtils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Dbase/UnitTestDbUtils.py ./rdkit/Dbase/UnitTestDbUtils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Dbase/UnitTestDbResultSet.py ./rdkit/Dbase/UnitTestDbResultSet.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Dbase/UnitTestDbInfo.py ./rdkit/Dbase/UnitTestDbInfo.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Dbase/UnitTestDbConnect.py ./rdkit/Dbase/UnitTestDbConnect.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Dbase/StorageUtils.py ./rdkit/Dbase/StorageUtils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Dbase/DbUtils.py ./rdkit/Dbase/DbUtils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Dbase/DbResultSet.py ./rdkit/Dbase/DbResultSet.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Dbase/DbReport.py ./rdkit/Dbase/DbReport.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Dbase/DbModule.py ./rdkit/Dbase/DbModule.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Dbase/DbInfo.py ./rdkit/Dbase/DbInfo.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Dbase/DbConnection.py ./rdkit/Dbase/DbConnection.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/DataStructs/test_list.py ./rdkit/DataStructs/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/DataStructs/__init__.py ./rdkit/DataStructs/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/DataStructs/VectCollection.py ./rdkit/DataStructs/VectCollection.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/DataStructs/UnitTestcBitVect.py ./rdkit/DataStructs/UnitTestcBitVect.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/DataStructs/UnitTestTopNContainer.py ./rdkit/DataStructs/UnitTestTopNContainer.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/DataStructs/UnitTestDocTests.py ./rdkit/DataStructs/UnitTestDocTests.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/DataStructs/UnitTestBitEnsemble.py ./rdkit/DataStructs/UnitTestBitEnsemble.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/DataStructs/TopNContainer.py ./rdkit/DataStructs/TopNContainer.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/DataStructs/LazySignature.py ./rdkit/DataStructs/LazySignature.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/DataStructs/HierarchyVis.py ./rdkit/DataStructs/HierarchyVis.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/DataStructs/BitUtils.py ./rdkit/DataStructs/BitUtils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/DataStructs/BitEnsembleDb.py ./rdkit/DataStructs/BitEnsembleDb.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/DataStructs/BitEnsemble.py ./rdkit/DataStructs/BitEnsemble.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/DataManip/__init__.py ./rdkit/DataManip/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/DataManip/Metric/__init__.py ./rdkit/DataManip/Metric/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/test_list.py ./rdkit/Chem/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/test_data/BuildDescrsTestSet.py ./rdkit/Chem/test_data/BuildDescrsTestSet.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/test_data/BuildDescrsTestSet.Crippen.py ./rdkit/Chem/test_data/BuildDescrsTestSet.Crippen.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/test_data/BuildCrippenTestSet.py ./rdkit/Chem/test_data/BuildCrippenTestSet.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/fmcs/fmcs.py ./rdkit/Chem/fmcs/fmcs.py: updating + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/fmcs/__init__.py ./rdkit/Chem/fmcs/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/__init__.py ./rdkit/Chem/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestSurf.py ./rdkit/Chem/UnitTestSurf.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestSuppliers.py ./rdkit/Chem/UnitTestSuppliers.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestSmiles.py ./rdkit/Chem/UnitTestSmiles.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestSaltRemover.py ./rdkit/Chem/UnitTestSaltRemover.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestSATIS.py ./rdkit/Chem/UnitTestSATIS.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestRegistrationHash.py ./rdkit/Chem/UnitTestRegistrationHash.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestQED.py ./rdkit/Chem/UnitTestQED.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestPandasTools.py ./rdkit/Chem/UnitTestPandasTools.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestOldBugs.py ./rdkit/Chem/UnitTestOldBugs.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestMol3D.py ./rdkit/Chem/UnitTestMol3D.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestMCS.py ./rdkit/Chem/UnitTestMCS.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestLipinski.py ./rdkit/Chem/UnitTestLipinski.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestInchi.py ./rdkit/Chem/UnitTestInchi.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestGraphDescriptors_2.py ./rdkit/Chem/UnitTestGraphDescriptors_2.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestFunctionalGroups.py ./rdkit/Chem/UnitTestFunctionalGroups.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestFragmentDescriptors.py ./rdkit/Chem/UnitTestFragmentDescriptors.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestFeatFinderCLI.py ./rdkit/Chem/UnitTestFeatFinderCLI.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestEnumerateHeterocycles.py ./rdkit/Chem/UnitTestEnumerateHeterocycles.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestDocTestsChem.py ./rdkit/Chem/UnitTestDocTestsChem.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestDescriptors.py ./rdkit/Chem/UnitTestDescriptors.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestCrippen.py ./rdkit/Chem/UnitTestCrippen.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestChemv2.py ./rdkit/Chem/UnitTestChemv2.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestChemSmarts.py ./rdkit/Chem/UnitTestChemSmarts.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestChemBond.py ./rdkit/Chem/UnitTestChemBond.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestChemAtom.py ./rdkit/Chem/UnitTestChemAtom.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestChem.py ./rdkit/Chem/UnitTestChem.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/UnitTestCatalog.py ./rdkit/Chem/UnitTestCatalog.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/TorsionFingerprints.py ./rdkit/Chem/TorsionFingerprints.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/TemplateAlign.py ./rdkit/Chem/TemplateAlign.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Suppliers/test_list.py ./rdkit/Chem/Suppliers/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Suppliers/__init__.py ./rdkit/Chem/Suppliers/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Suppliers/UnitTestSmilesMolSupplier.py ./rdkit/Chem/Suppliers/UnitTestSmilesMolSupplier.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Suppliers/UnitTestSDMolSupplier.py ./rdkit/Chem/Suppliers/UnitTestSDMolSupplier.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Suppliers/UnitTestDbMolSupplier.py ./rdkit/Chem/Suppliers/UnitTestDbMolSupplier.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Suppliers/MolSupplier.py ./rdkit/Chem/Suppliers/MolSupplier.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Suppliers/DbMolSupplier.py ./rdkit/Chem/Suppliers/DbMolSupplier.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Subshape/test_list.py ./rdkit/Chem/Subshape/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Subshape/testCombined.py ./rdkit/Chem/Subshape/testCombined.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Subshape/__init__.py ./rdkit/Chem/Subshape/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Subshape/UnitTestSubshape.py ./rdkit/Chem/Subshape/UnitTestSubshape.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Subshape/SubshapeObjects.py ./rdkit/Chem/Subshape/SubshapeObjects.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Subshape/SubshapeBuilder.py ./rdkit/Chem/Subshape/SubshapeBuilder.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Subshape/SubshapeAligner.py ./rdkit/Chem/Subshape/SubshapeAligner.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Subshape/BuilderUtils.py ./rdkit/Chem/Subshape/BuilderUtils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/SimpleEnum/test_list.py ./rdkit/Chem/SimpleEnum/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/SimpleEnum/__init__.py ./rdkit/Chem/SimpleEnum/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/SimpleEnum/UnitTestEnumerator.py ./rdkit/Chem/SimpleEnum/UnitTestEnumerator.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/SimpleEnum/Enumerator.py ./rdkit/Chem/SimpleEnum/Enumerator.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/ShowMols.py ./rdkit/Chem/ShowMols.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Scaffolds/test_list.py ./rdkit/Chem/Scaffolds/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Scaffolds/__init__.py ./rdkit/Chem/Scaffolds/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Scaffolds/UnitTestMurckoScaffold.py ./rdkit/Chem/Scaffolds/UnitTestMurckoScaffold.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Scaffolds/MurckoScaffold.py ./rdkit/Chem/Scaffolds/MurckoScaffold.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/SaltRemover.py ./rdkit/Chem/SaltRemover.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/SATIS.py ./rdkit/Chem/SATIS.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/RegistrationHash.py ./rdkit/Chem/RegistrationHash.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/ReducedGraphs.py ./rdkit/Chem/ReducedGraphs.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Recap.py ./rdkit/Chem/Recap.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Randomize.py ./rdkit/Chem/Randomize.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/QED.py ./rdkit/Chem/QED.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/PyMol.py ./rdkit/Chem/PyMol.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/PropertyMol.py ./rdkit/Chem/PropertyMol.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm3D/test_list.py ./rdkit/Chem/Pharm3D/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm3D/__init__.py ./rdkit/Chem/Pharm3D/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm3D/UnitTestPharmacophore.py ./rdkit/Chem/Pharm3D/UnitTestPharmacophore.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm3D/UnitTestExcludedVolume.py ./rdkit/Chem/Pharm3D/UnitTestExcludedVolume.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm3D/UnitTestEmbed.py ./rdkit/Chem/Pharm3D/UnitTestEmbed.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm3D/Pharmacophore.py ./rdkit/Chem/Pharm3D/Pharmacophore.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm3D/ExcludedVolume.py ./rdkit/Chem/Pharm3D/ExcludedVolume.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm3D/EmbedLib.py ./rdkit/Chem/Pharm3D/EmbedLib.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm2D/test_list.py ./rdkit/Chem/Pharm2D/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm2D/__init__.py ./rdkit/Chem/Pharm2D/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm2D/Utils.py ./rdkit/Chem/Pharm2D/Utils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm2D/UnitTestUtils.py ./rdkit/Chem/Pharm2D/UnitTestUtils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm2D/UnitTestSignature.py ./rdkit/Chem/Pharm2D/UnitTestSignature.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm2D/UnitTestMatcher.py ./rdkit/Chem/Pharm2D/UnitTestMatcher.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm2D/UnitTestLazyGenerator.py ./rdkit/Chem/Pharm2D/UnitTestLazyGenerator.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm2D/UnitTestGobbi.py ./rdkit/Chem/Pharm2D/UnitTestGobbi.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm2D/UnitTestGenerate.py ./rdkit/Chem/Pharm2D/UnitTestGenerate.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm2D/SigFactory.py ./rdkit/Chem/Pharm2D/SigFactory.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm2D/Matcher.py ./rdkit/Chem/Pharm2D/Matcher.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm2D/LazyGenerator.py ./rdkit/Chem/Pharm2D/LazyGenerator.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm2D/Gobbi_Pharm2D.py ./rdkit/Chem/Pharm2D/Gobbi_Pharm2D.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Pharm2D/Generate.py ./rdkit/Chem/Pharm2D/Generate.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/PandasTools.py ./rdkit/Chem/PandasTools.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/PandasPatcher.py ./rdkit/Chem/PandasPatcher.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolSurf.py ./rdkit/Chem/MolSurf.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolStandardize/validations.py ./rdkit/Chem/MolStandardize/validations.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolStandardize/validate.py ./rdkit/Chem/MolStandardize/validate.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolStandardize/utils.py ./rdkit/Chem/MolStandardize/utils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolStandardize/test_standardizer.py ./rdkit/Chem/MolStandardize/test_standardizer.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolStandardize/test_list.py ./rdkit/Chem/MolStandardize/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolStandardize/tautomer.py ./rdkit/Chem/MolStandardize/tautomer.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolStandardize/standardize.py ./rdkit/Chem/MolStandardize/standardize.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolStandardize/resonance.py ./rdkit/Chem/MolStandardize/resonance.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolStandardize/normalize.py ./rdkit/Chem/MolStandardize/normalize.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolStandardize/metal.py ./rdkit/Chem/MolStandardize/metal.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolStandardize/fragment.py ./rdkit/Chem/MolStandardize/fragment.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolStandardize/errors.py ./rdkit/Chem/MolStandardize/errors.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolStandardize/charge.py ./rdkit/Chem/MolStandardize/charge.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolStandardize/__init__.py ./rdkit/Chem/MolStandardize/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolStandardize/UnitTestMolVS.py ./rdkit/Chem/MolStandardize/UnitTestMolVS.py: updating + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolStandardize/UnitTestMolStandardize.py ./rdkit/Chem/MolStandardize/UnitTestMolStandardize.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolKey/test_list.py ./rdkit/Chem/MolKey/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolKey/__init__.py ./rdkit/Chem/MolKey/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolKey/UnitTestMolKey.py ./rdkit/Chem/MolKey/UnitTestMolKey.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolKey/MolKey.py ./rdkit/Chem/MolKey/MolKey.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolKey/InchiInfo.py ./rdkit/Chem/MolKey/InchiInfo.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolDb/__init__.py ./rdkit/Chem/MolDb/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolDb/Loader_sa.py ./rdkit/Chem/MolDb/Loader_sa.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolDb/Loader_orig.py ./rdkit/Chem/MolDb/Loader_orig.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolDb/Loader.py ./rdkit/Chem/MolDb/Loader.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolDb/FingerprintUtils.py ./rdkit/Chem/MolDb/FingerprintUtils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MolCatalog.py ./rdkit/Chem/MolCatalog.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MCS.py ./rdkit/Chem/MCS.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/MACCSkeys.py ./rdkit/Chem/MACCSkeys.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Lipinski.py ./rdkit/Chem/Lipinski.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Graphs.py ./rdkit/Chem/Graphs.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/GraphDescriptors.py ./rdkit/Chem/GraphDescriptors.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/FunctionalGroups.py ./rdkit/Chem/FunctionalGroups.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Fragments.py ./rdkit/Chem/Fragments.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/FragmentMatcher.py ./rdkit/Chem/FragmentMatcher.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/FragmentCatalog.py ./rdkit/Chem/FragmentCatalog.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Fraggle/test_list.py ./rdkit/Chem/Fraggle/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Fraggle/__init__.py ./rdkit/Chem/Fraggle/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Fraggle/UnitTestFraggle.py ./rdkit/Chem/Fraggle/UnitTestFraggle.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Fraggle/FraggleSim.py ./rdkit/Chem/Fraggle/FraggleSim.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Fingerprints/test_list.py ./rdkit/Chem/Fingerprints/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Fingerprints/__init__.py ./rdkit/Chem/Fingerprints/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Fingerprints/UnitTestSimScreener.py ./rdkit/Chem/Fingerprints/UnitTestSimScreener.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Fingerprints/UnitTestFingerprints.py ./rdkit/Chem/Fingerprints/UnitTestFingerprints.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Fingerprints/UnitTestDbFpSupplier.py ./rdkit/Chem/Fingerprints/UnitTestDbFpSupplier.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Fingerprints/SimilarityScreener.py ./rdkit/Chem/Fingerprints/SimilarityScreener.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Fingerprints/MolSimilarity.py ./rdkit/Chem/Fingerprints/MolSimilarity.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Fingerprints/FingerprintMols.py ./rdkit/Chem/Fingerprints/FingerprintMols.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Fingerprints/DbFpSupplier.py ./rdkit/Chem/Fingerprints/DbFpSupplier.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Fingerprints/ClusterMols.py ./rdkit/Chem/Fingerprints/ClusterMols.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/FilterCatalog.py ./rdkit/Chem/FilterCatalog.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Features/test_list.py ./rdkit/Chem/Features/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Features/__init__.py ./rdkit/Chem/Features/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Features/UnitTestFeatDirUtilsRD.py ./rdkit/Chem/Features/UnitTestFeatDirUtilsRD.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Features/ShowFeats.py ./rdkit/Chem/Features/ShowFeats.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Features/FeatDirUtilsRD.py ./rdkit/Chem/Features/FeatDirUtilsRD.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/FeatMaps/test_list.py ./rdkit/Chem/FeatMaps/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/FeatMaps/__init__.py ./rdkit/Chem/FeatMaps/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/FeatMaps/UnitTestFeatMapUtils.py ./rdkit/Chem/FeatMaps/UnitTestFeatMapUtils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/FeatMaps/UnitTestFeatMapPoint.py ./rdkit/Chem/FeatMaps/UnitTestFeatMapPoint.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/FeatMaps/UnitTestFeatMapParser.py ./rdkit/Chem/FeatMaps/UnitTestFeatMapParser.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/FeatMaps/UnitTestFeatMap.py ./rdkit/Chem/FeatMaps/UnitTestFeatMap.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/FeatMaps/FeatMaps.py ./rdkit/Chem/FeatMaps/FeatMaps.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/FeatMaps/FeatMapUtils.py ./rdkit/Chem/FeatMaps/FeatMapUtils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/FeatMaps/FeatMapPoint.py ./rdkit/Chem/FeatMaps/FeatMapPoint.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/FeatMaps/FeatMapParser.py ./rdkit/Chem/FeatMaps/FeatMapParser.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/FeatFinderCLI.py ./rdkit/Chem/FeatFinderCLI.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/FastSDMolSupplier.py ./rdkit/Chem/FastSDMolSupplier.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/EnumerateStereoisomers.py ./rdkit/Chem/EnumerateStereoisomers.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/EnumerateHeterocycles.py ./rdkit/Chem/EnumerateHeterocycles.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/EState/test_list.py ./rdkit/Chem/EState/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/EState/__init__.py ./rdkit/Chem/EState/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/EState/UnitTestVSA.py ./rdkit/Chem/EState/UnitTestVSA.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/EState/UnitTestTypes.py ./rdkit/Chem/EState/UnitTestTypes.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/EState/UnitTestFingerprints.py ./rdkit/Chem/EState/UnitTestFingerprints.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/EState/UnitTestEState.py ./rdkit/Chem/EState/UnitTestEState.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/EState/Fingerprinter.py ./rdkit/Chem/EState/Fingerprinter.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/EState/EState_VSA.py ./rdkit/Chem/EState/EState_VSA.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/EState/EState.py ./rdkit/Chem/EState/EState.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/EState/AtomTypes.py ./rdkit/Chem/EState/AtomTypes.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Draw/test_list.py ./rdkit/Chem/Draw/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Draw/spingCanvas.py ./rdkit/Chem/Draw/spingCanvas.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Draw/qtCanvas.py ./rdkit/Chem/Draw/qtCanvas.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Draw/mplCanvas.py ./rdkit/Chem/Draw/mplCanvas.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Draw/canvasbase.py ./rdkit/Chem/Draw/canvasbase.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Draw/cairoCanvas.py ./rdkit/Chem/Draw/cairoCanvas.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Draw/aggCanvas.py ./rdkit/Chem/Draw/aggCanvas.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Draw/__init__.py ./rdkit/Chem/Draw/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Draw/UnitTestSimilarityMaps.py ./rdkit/Chem/Draw/UnitTestSimilarityMaps.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Draw/UnitTestIPython.py ./rdkit/Chem/Draw/UnitTestIPython.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Draw/UnitTestDraw.py ./rdkit/Chem/Draw/UnitTestDraw.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Draw/SimilarityMaps.py ./rdkit/Chem/Draw/SimilarityMaps.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Draw/MolDrawing.py ./rdkit/Chem/Draw/MolDrawing.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Draw/InteractiveRenderer.py ./rdkit/Chem/Draw/InteractiveRenderer.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Draw/IPythonConsole.py ./rdkit/Chem/Draw/IPythonConsole.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Descriptors3D.py ./rdkit/Chem/Descriptors3D.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Descriptors.py ./rdkit/Chem/Descriptors.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/DSViewer.py ./rdkit/Chem/DSViewer.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/Crippen.py ./rdkit/Chem/Crippen.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/ChemicalForceFields.py ./rdkit/Chem/ChemicalForceFields.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/ChemicalFeatures.py ./rdkit/Chem/ChemicalFeatures.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/ChemUtils/test_list.py ./rdkit/Chem/ChemUtils/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/ChemUtils/__init__.py ./rdkit/Chem/ChemUtils/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/ChemUtils/UnitTestSDFToCSV.py ./rdkit/Chem/ChemUtils/UnitTestSDFToCSV.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/ChemUtils/UnitTestAlignDepict.py ./rdkit/Chem/ChemUtils/UnitTestAlignDepict.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/ChemUtils/TemplateExpand.py ./rdkit/Chem/ChemUtils/TemplateExpand.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/ChemUtils/SDFToCSV.py ./rdkit/Chem/ChemUtils/SDFToCSV.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/ChemUtils/DescriptorUtilities.py ./rdkit/Chem/ChemUtils/DescriptorUtilities.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/ChemUtils/BulkTester.py ./rdkit/Chem/ChemUtils/BulkTester.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/ChemUtils/AlignDepict.py ./rdkit/Chem/ChemUtils/AlignDepict.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/BuildFragmentCatalog.py ./rdkit/Chem/BuildFragmentCatalog.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/BRICS.py ./rdkit/Chem/BRICS.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/AtomPairs/test_list.py ./rdkit/Chem/AtomPairs/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/AtomPairs/__init__.py ./rdkit/Chem/AtomPairs/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/AtomPairs/Utils.py ./rdkit/Chem/AtomPairs/Utils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/AtomPairs/UnitTestDescriptors.py ./rdkit/Chem/AtomPairs/UnitTestDescriptors.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/AtomPairs/Torsions.py ./rdkit/Chem/AtomPairs/Torsions.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/AtomPairs/Sheridan.py ./rdkit/Chem/AtomPairs/Sheridan.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/AtomPairs/Pairs.py ./rdkit/Chem/AtomPairs/Pairs.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Chem/AllChem.py ./rdkit/Chem/AllChem.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./rdkit/Avalon/__init__.py ./rdkit/Avalon/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./build_support/pkg_version.py ./build_support/pkg_version.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Web/RDExtras/MolImage.py ./Web/RDExtras/MolImage.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Web/RDExtras/MolDepict.py ./Web/RDExtras/MolDepict.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Scripts/run_python_tests.py ./Scripts/run_python_tests.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Scripts/PythonFormat.py ./Scripts/PythonFormat.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Scripts/FeatFinderCLI.py ./Scripts/FeatFinderCLI.py: updating + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Regress/Scripts/timings.py ./Regress/Scripts/timings.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Regress/Scripts/new_timings.py ./Regress/Scripts/new_timings.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Regress/Scripts/fingerprint_screenout.py ./Regress/Scripts/fingerprint_screenout.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Regress/Scripts/chiral_embed.py ./Regress/Scripts/chiral_embed.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Projects/test_list.py ./Projects/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Projects/DbCLI/test_list.py ./Projects/DbCLI/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Projects/DbCLI/TestDbCLI.py ./Projects/DbCLI/TestDbCLI.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Projects/DbCLI/SearchDb.py ./Projects/DbCLI/SearchDb.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Projects/DbCLI/CreateDb.py ./Projects/DbCLI/CreateDb.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./External/pymol/modules/pymol/rpc.py ./External/pymol/modules/pymol/rpc.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./External/YAeHMOP/Wrap/testEHTTools.py ./External/YAeHMOP/Wrap/testEHTTools.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./External/INCHI-API/python/noinchi.py ./External/INCHI-API/python/noinchi.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./External/INCHI-API/python/inchi.py ./External/INCHI-API/python/inchi.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./External/FreeSASA/Wrap/testFreeSASA.py ./External/FreeSASA/Wrap/testFreeSASA.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./External/CoordGen/Wrap/testCoordGen.py ./External/CoordGen/Wrap/testCoordGen.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./External/AvalonTools/test_list.py ./External/AvalonTools/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./External/AvalonTools/Wrap/test_list.py ./External/AvalonTools/Wrap/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./External/AvalonTools/Wrap/testAvalonTools.py ./External/AvalonTools/Wrap/testAvalonTools.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Docs/Book_jp/conf.py ./Docs/Book_jp/conf.py: updating + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Docs/Book/exts/extapi.py ./Docs/Book/exts/extapi.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Docs/Book/data/test_multi_colours.py ./Docs/Book/data/test_multi_colours.py: updating + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Docs/Book/conf.py ./Docs/Book/conf.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Data/SmartsLib/tests/bench2.py ./Data/SmartsLib/tests/bench2.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Data/Pains/test_data/run_tests.py ./Data/Pains/test_data/run_tests.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Data/Fonts/font_dumper.py ./Data/Fonts/font_dumper.py: updating + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Data/DTDs/validate.py ./Data/DTDs/validate.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/pzc/p_con.py ./Contrib/pzc/p_con.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/mmpa/test_rfrag.py ./Contrib/mmpa/test_rfrag.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/mmpa/test_list.py ./Contrib/mmpa/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/mmpa/search_mmp_db.py ./Contrib/mmpa/search_mmp_db.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/mmpa/rfrag.py ./Contrib/mmpa/rfrag.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/mmpa/mol_transform.py ./Contrib/mmpa/mol_transform.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/mmpa/indexing.py ./Contrib/mmpa/indexing.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/mmpa/create_mmp_db.py ./Contrib/mmpa/create_mmp_db.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/mmpa/cansmirk.py ./Contrib/mmpa/cansmirk.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/fraggle/rdkit_tversky.py ./Contrib/fraggle/rdkit_tversky.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/fraggle/fraggle.py ./Contrib/fraggle/fraggle.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/fraggle/cxn_tversky.py ./Contrib/fraggle/cxn_tversky.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/fraggle/atomcontrib.py ./Contrib/fraggle/atomcontrib.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/SA_Score/sascorer.py ./Contrib/SA_Score/sascorer.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/SA_Score/UnitTestSAScore.py ./Contrib/SA_Score/UnitTestSAScore.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/RxnRoleAssignment/utils.py ./Contrib/RxnRoleAssignment/utils.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/RxnRoleAssignment/identifyReactants.py ./Contrib/RxnRoleAssignment/identifyReactants.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/RxnRoleAssignment/__init__.py ./Contrib/RxnRoleAssignment/__init__.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/PBF/pbf.py ./Contrib/PBF/pbf.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/NP_Score/npscorer.py ./Contrib/NP_Score/npscorer.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/NIBRSubstructureFilters/assignSubstructureFilters.py ./Contrib/NIBRSubstructureFilters/assignSubstructureFilters.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/MolVS/molvs_cli.py ./Contrib/MolVS/molvs_cli.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/M_Kossner/Frames.py ./Contrib/M_Kossner/Frames.py: updating + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/LEF/DistancePredict.py ./Contrib/LEF/DistancePredict.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/LEF/DistancePlot.py ./Contrib/LEF/DistancePlot.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/LEF/CreateFps.py ./Contrib/LEF/CreateFps.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/LEF/ClusterFps.py ./Contrib/LEF/ClusterFps.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/LEF/AddLabels.py ./Contrib/LEF/AddLabels.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/IFG/ifg.py ./Contrib/IFG/ifg.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/Glare/glare.py ./Contrib/Glare/glare.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/FreeWilson/test/test_freewilson.py ./Contrib/FreeWilson/test/test_freewilson.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/FreeWilson/setup.py ./Contrib/FreeWilson/setup.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/FreeWilson/freewilson.py ./Contrib/FreeWilson/freewilson.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/Fastcluster/testdata/sdf2smi.py ./Contrib/Fastcluster/testdata/sdf2smi.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/Fastcluster/fastcluster.py ./Contrib/Fastcluster/fastcluster.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/ConformerParser/test_list.py ./Contrib/ConformerParser/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/ConformerParser/Wrap/test_list.py ./Contrib/ConformerParser/Wrap/test_list.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/ConformerParser/Wrap/testConformerParser.py ./Contrib/ConformerParser/Wrap/testConformerParser.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/ChiralPairs/ChiralDescriptors.py ./Contrib/ChiralPairs/ChiralDescriptors.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/CalcLigRMSD/CalcLigRMSD.py ./Contrib/CalcLigRMSD/CalcLigRMSD.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Contrib/AtomAtomSimilarity/AtomAtomPathSimilarity.py ./Contrib/AtomAtomSimilarity/AtomAtomPathSimilarity.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/cmake/Modules/fixup_coverage.py ./Code/cmake/Modules/fixup_coverage.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/SimDivPickers/Wrap/testPickers.py ./Code/SimDivPickers/Wrap/testPickers.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/SimDivPickers/Wrap/testMaxMin.py ./Code/SimDivPickers/Wrap/testMaxMin.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/Numerics/Alignment/Wrap/testAlignment.py ./Code/Numerics/Alignment/Wrap/testAlignment.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/MinimalLib/simple.py ./Code/MinimalLib/simple.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/ML/InfoTheory/Wrap/testRanker.py ./Code/ML/InfoTheory/Wrap/testRanker.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/JavaWrappers/parse_doxy_html.py ./Code/JavaWrappers/parse_doxy_html.py: updating + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/JavaWrappers/make_templates.py ./Code/JavaWrappers/make_templates.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Wrap/test_data/do_smiles.py ./Code/GraphMol/Wrap/test_data/do_smiles.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Wrap/test_data/do_smiles.bomb.py ./Code/GraphMol/Wrap/test_data/do_smiles.bomb.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Wrap/test_cdxml.py ./Code/GraphMol/Wrap/test_cdxml.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Wrap/testTrajectory.py ./Code/GraphMol/Wrap/testTrajectory.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Wrap/testThreads.py ./Code/GraphMol/Wrap/testThreads.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Wrap/testSGroups.py ./Code/GraphMol/Wrap/testSGroups.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Wrap/testPropertyLists.py ./Code/GraphMol/Wrap/testPropertyLists.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Wrap/testMultithreadedMolSupplier.py ./Code/GraphMol/Wrap/testMultithreadedMolSupplier.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Wrap/testConformer.py ./Code/GraphMol/Wrap/testConformer.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Wrap/rough_test.py ./Code/GraphMol/Wrap/rough_test.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/UnitTestQueryMol.py ./Code/GraphMol/UnitTestQueryMol.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/TautomerQuery/Wrap/rough_test.py ./Code/GraphMol/TautomerQuery/Wrap/rough_test.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/SubstructLibrary/Wrap/rough_test.py ./Code/GraphMol/SubstructLibrary/Wrap/rough_test.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Substruct/UnitTestSubstruct.py ./Code/GraphMol/Substruct/UnitTestSubstruct.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/StructChecker/Wrap/rough_test.py ./Code/GraphMol/StructChecker/Wrap/rough_test.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/ShapeHelpers/Wrap/testShapeHelpers.py ./Code/GraphMol/ShapeHelpers/Wrap/testShapeHelpers.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/ScaffoldNetwork/Wrap/testScaffoldNetwork.py ./Code/GraphMol/ScaffoldNetwork/Wrap/testScaffoldNetwork.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/ScaffoldNetwork/Wrap/testPickleScaffoldNetwork.py ./Code/GraphMol/ScaffoldNetwork/Wrap/testPickleScaffoldNetwork.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/SLNParse/Wrap/testSLN.py ./Code/GraphMol/SLNParse/Wrap/testSLN.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/ReducedGraphs/Wrap/testReducedGraphs.py ./Code/GraphMol/ReducedGraphs/Wrap/testReducedGraphs.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/RGroupDecomposition/Wrap/test_rgroups.py ./Code/GraphMol/RGroupDecomposition/Wrap/test_rgroups.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/PartialCharges/Wrap/testPartialCharges.py ./Code/GraphMol/PartialCharges/Wrap/testPartialCharges.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/MolTransforms/Wrap/testMolTransforms.py ./Code/GraphMol/MolTransforms/Wrap/testMolTransforms.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/MolStandardize/Wrap/testMolStandardize.py ./Code/GraphMol/MolStandardize/Wrap/testMolStandardize.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/MolInterchange/Wrap/testMolInterchange.py ./Code/GraphMol/MolInterchange/Wrap/testMolInterchange.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/MolHash/Wrap/testMolHash.py ./Code/GraphMol/MolHash/Wrap/testMolHash.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/MolEnumerator/Wrap/rough_test.py ./Code/GraphMol/MolEnumerator/Wrap/rough_test.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/MolDraw2D/update_hash_codes.py ./Code/GraphMol/MolDraw2D/update_hash_codes.py: updating + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/MolDraw2D/test_dir/test_rdkit_draw.py ./Code/GraphMol/MolDraw2D/test_dir/test_rdkit_draw.py: updating + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/MolDraw2D/side_by_side_images.py ./Code/GraphMol/MolDraw2D/side_by_side_images.py: updating + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/MolDraw2D/Wrap/testMolDraw2D.py ./Code/GraphMol/MolDraw2D/Wrap/testMolDraw2D.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/MolDraw2D/Qt/Wrap/testMolDraw2DQt.py ./Code/GraphMol/MolDraw2D/Qt/Wrap/testMolDraw2DQt.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/MolChemicalFeatures/Wrap/testChemicalFeatures.py ./Code/GraphMol/MolChemicalFeatures/Wrap/testChemicalFeatures.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/MolCatalog/Wrap/rough_test.py ./Code/GraphMol/MolCatalog/Wrap/rough_test.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/MolAlign/Wrap/testMolAlign.py ./Code/GraphMol/MolAlign/Wrap/testMolAlign.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/MMPA/Wrap/testMMPA.py ./Code/GraphMol/MMPA/Wrap/testMMPA.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/FragCatalog/Wrap/rough_test.py ./Code/GraphMol/FragCatalog/Wrap/rough_test.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/ForceFieldHelpers/Wrap/testHelpers.py ./Code/GraphMol/ForceFieldHelpers/Wrap/testHelpers.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Fingerprints/Wrap/testMHFP.py ./Code/GraphMol/Fingerprints/Wrap/testMHFP.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Fingerprints/Wrap/testGenerators.py ./Code/GraphMol/Fingerprints/Wrap/testGenerators.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/FilterCatalog/update_pains.py ./Code/GraphMol/FilterCatalog/update_pains.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/FilterCatalog/Wrap/rough_test.py ./Code/GraphMol/FilterCatalog/Wrap/rough_test.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/FileParsers/mol.py ./Code/GraphMol/FileParsers/mol.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/FMCS/Wrap/testFMCS.py ./Code/GraphMol/FMCS/Wrap/testFMCS.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/DistGeomHelpers/Wrap/testDistGeom.py ./Code/GraphMol/DistGeomHelpers/Wrap/testDistGeom.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/DetermineBonds/Wrap/testDetermineBonds.py ./Code/GraphMol/DetermineBonds/Wrap/testDetermineBonds.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Descriptors/test_data/pmi.py ./Code/GraphMol/Descriptors/test_data/pmi.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Descriptors/test3D_old.py ./Code/GraphMol/Descriptors/test3D_old.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Descriptors/test3D.py ./Code/GraphMol/Descriptors/test3D.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Descriptors/Wrap/testMolDescriptors.py ./Code/GraphMol/Descriptors/Wrap/testMolDescriptors.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Descriptors/Wrap/test3D.py ./Code/GraphMol/Descriptors/Wrap/test3D.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Deprotect/Wrap/rough_test.py ./Code/GraphMol/Deprotect/Wrap/rough_test.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Depictor/Wrap/testDepictor.py ./Code/GraphMol/Depictor/Wrap/testDepictor.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/ChemReactions/Wrap/testSanitize.py ./Code/GraphMol/ChemReactions/Wrap/testSanitize.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/ChemReactions/Wrap/testReactionWrapper.py ./Code/GraphMol/ChemReactions/Wrap/testReactionWrapper.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/ChemReactions/Wrap/testEnumerations.py ./Code/GraphMol/ChemReactions/Wrap/testEnumerations.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/CIPLabeler/Wrap/pyCIPLabelsValidation.py ./Code/GraphMol/CIPLabeler/Wrap/pyCIPLabelsValidation.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/CIPLabeler/Wrap/pyCIPLabelWrapTest.py ./Code/GraphMol/CIPLabeler/Wrap/pyCIPLabelWrapTest.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/GraphMol/Abbreviations/Wrap/testAbbreviations.py ./Code/GraphMol/Abbreviations/Wrap/testAbbreviations.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/Geometry/Wrap/testGeometry.py ./Code/Geometry/Wrap/testGeometry.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/ForceField/Wrap/testConstraints.py ./Code/ForceField/Wrap/testConstraints.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/DistGeom/Wrap/rough_test.py ./Code/DistGeom/Wrap/rough_test.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/Demos/boost/smartPtrsAndIters/test.py ./Code/Demos/boost/smartPtrsAndIters/test.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/Demos/boost/smartPtrsAndIters/setup.py ./Code/Demos/boost/smartPtrsAndIters/setup.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/Demos/boost/python_objs/test.py ./Code/Demos/boost/python_objs/test.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/Demos/boost/python_objs/setup.py ./Code/Demos/boost/python_objs/setup.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/Demos/boost/overloads/test.py ./Code/Demos/boost/overloads/test.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/Demos/boost/overloads/setup.py ./Code/Demos/boost/overloads/setup.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/Demos/boost/numpy/test.py ./Code/Demos/boost/numpy/test.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/Demos/boost/numpy/setup.py ./Code/Demos/boost/numpy/setup.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/Demos/boost/cross_module/test.py ./Code/Demos/boost/cross_module/test.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/Demos/boost/cross_module/setup.py ./Code/Demos/boost/cross_module/setup.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/Demos/boost/cross_mod_err/test.py ./Code/Demos/boost/cross_mod_err/test.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/Demos/boost/cross_mod_err/setup.py ./Code/Demos/boost/cross_mod_err/setup.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/Demos/boost/EBV_err/test.py ./Code/Demos/boost/EBV_err/test.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/Demos/boost/EBV_err/setup.py ./Code/Demos/boost/EBV_err/setup.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/Demos/RDKit/MPI/rdkpympi.py ./Code/Demos/RDKit/MPI/rdkpympi.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/DataStructs/Wrap/testSparseIntVect.py ./Code/DataStructs/Wrap/testSparseIntVect.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/DataStructs/Wrap/testFPB.py ./Code/DataStructs/Wrap/testFPB.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/DataStructs/Wrap/testDiscreteValueVect.py ./Code/DataStructs/Wrap/testDiscreteValueVect.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/DataStructs/Wrap/testBV.py ./Code/DataStructs/Wrap/testBV.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/DataManip/MetricMatrixCalc/Wrap/testMatricCalc.py ./Code/DataManip/MetricMatrixCalc/Wrap/testMatricCalc.py: no change + for i in `find ./ -name '*.py'` + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./Code/ChemicalFeatures/Wrap/testFeatures.py ./Code/ChemicalFeatures/Wrap/testFeatures.py: no change + cp -p Code/PgSQL/rdkit/README.md Code/PgSQL/rdkit/README_PgSQL.md + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.B58yVP + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd rdkit-Release_2023_03_2 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX ++ /usr/bin/pg_server_config --includedir-server + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -D RDK_INSTALL_INTREE=OFF -D CMAKE_BUILD_TYPE=Release -D CMAKE_SKIP_RPATH:BOOL=ON -D RDK_BUILD_INCHI_SUPPORT:BOOL=ON -D RDK_BUILD_THREADSAFE_SSS:BOOL=OFF -D RDK_BUILD_CAIRO_SUPPORT:BOOL=ON -D RDK_BUILD_DESCRIPTORS3D:BOOL=OFF -D RDK_BUILD_COORDGEN_SUPPORT:BOOL=OFF -D RDK_BUILD_MOLINTERCHANGE_SUPPORT:BOOL=OFF -D RDK_OPTIMIZE_POPCNT:BOOL=OFF -D DRDK_BUILD_CPP_TESTS:BOOL=ON -D RDK_BUILD_THREADSAFE_SSS:BOOL=ON -D RDK_BUILD_PGSQL:BOOL=ON -D PostgreSQL_ROOT:PATH=/usr -D PostgreSQL_TYPE_INCLUDE_DIR:PATH=/usr/include/pgsql/server -D RDK_PGSQL_STATIC:BOOL=OFF -D RDK_INSTALL_STATIC_LIBS:BOOL=OFF -D RDK_USE_FLEXBISON:BOOL=OFF -D RDK_TEST_MULTITHREADED:BOOL=ON -D PYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3 -D RDK_BOOST_PYTHON3_NAME=python311 -D CATCH_DIR:FILEPATH=/usr/include/catch2 -D RDK_USE_URF:BOOL=OFF -D RDK_INSTALL_COMIC_FONTS:BOOL=OFF -D RDK_BUILD_SWIG_JAVA_WRAPPER:BOOL=OFF -D RDK_BUILD_SWIG_WRAPPERS=OFF CMake Warning: No source or binary directory provided. Both will be assumed to be the same as the current working directory, but note that this warning will become a fatal error in future CMake releases. -- The C compiler identification is GNU 13.1.1 -- The CXX compiler identification is GNU 13.1.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Catch2: /usr/include/catch2 CATCH: /usr/include/catch2 -- Found Inchi: /usr/lib64/libinchi.so CMake Warning (dev) at CMakeLists.txt:267 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/bin/python3 (found version "3.11.4") CMake Warning (dev) at CMakeLists.txt:276 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonLibs: /usr/lib64/libpython3.11.so (found version "3.11.4") CMake Warning (dev) at Code/cmake/Modules/FindNumPy.cmake:10 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): CMakeLists.txt:291 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. Python Install directory /usr/lib64/python3.11/site-packages PYTHON Py_ENABLE_SHARED: 1 PYTHON USING LINK LINE: -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g nbval not found, disabling the jupyter tests -- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0") -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Found Boost: /usr/lib64/cmake/Boost-1.81.0/BoostConfig.cmake (found suitable version "1.81.0", minimum required is "1.58.0") found components: system serialization iostreams CMake Warning (dev) at CMakeLists.txt:453 (find_package): Policy CMP0074 is not set: find_package uses _ROOT variables. Run "cmake --help-policy CMP0074" for policy details. Use the cmake_policy command to set the policy and suppress this warning. CMake variable PostgreSQL_ROOT is set to: /usr For compatibility, CMake is ignoring the variable. This warning is for project developers. Use -Wno-dev to suppress it. -- Found PostgreSQL: /usr/lib64/libpq.so (found version "15.3") == Using strict rotor definition -- Found Boost: /usr/lib64/cmake/Boost-1.81.0/BoostConfig.cmake (found suitable version "1.81.0", minimum required is "1.58.0") found components: system iostreams -- maeparser include dir set as '/usr/include' -- maeparser libraries set as '/usr/lib64/libmaeparser.so' -- Found maeparser: /usr/include -- Found Boost: /usr/lib64/cmake/Boost-1.81.0/BoostConfig.cmake (found suitable version "1.81.0", minimum required is "1.58.0") found components: iostreams -- Found Boost: /usr/lib64/cmake/Boost-1.81.0/BoostConfig.cmake (found suitable version "1.81.0", minimum required is "1.58.0") found components: system iostreams -- Found ZLIB: /usr/lib64/libz.so (found version "1.2.13") CMake Warning (dev) at Code/GraphMol/FilterCatalog/CMakeLists.txt:8 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found PkgConfig: /usr/bin/pkg-config (found version "1.9.4") -- Found Cairo: /usr/include/cairo -- Found Freetype: /usr/lib64/libfreetype.so (found version "2.13.1") -- Found Boost: /usr/lib64/cmake/Boost-1.81.0/BoostConfig.cmake (found suitable version "1.81.0", minimum required is "1.58.0") found components: program_options CMake Warning (dev) at Code/PgSQL/rdkit/CMakeLists.txt:23 (find_package): Policy CMP0074 is not set: find_package uses _ROOT variables. Run "cmake --help-policy CMP0074" for policy details. Use the cmake_policy command to set the policy and suppress this warning. CMake variable PostgreSQL_ROOT is set to: /usr For compatibility, CMake is ignoring the variable. This warning is for project developers. Use -Wno-dev to suppress it. postgres: /usr/include;/usr/include/pgsql/server -- Configuring done (1.2s) -- Generating done (0.4s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP DRDK_BUILD_CPP_TESTS INCLUDE_INSTALL_DIR LIB_INSTALL_DIR SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/rdkit-Release_2023_03_2 + /usr/bin/cmake --build . -j2 --verbose Change Dir: '/builddir/build/BUILD/rdkit-Release_2023_03_2' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j2 /usr/bin/cmake -S/builddir/build/BUILD/rdkit-Release_2023_03_2 -B/builddir/build/BUILD/rdkit-Release_2023_03_2 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/rdkit-Release_2023_03_2/CMakeFiles /builddir/build/BUILD/rdkit-Release_2023_03_2//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f External/catch/CMakeFiles/catch.dir/build.make External/catch/CMakeFiles/catch.dir/depend /usr/bin/gmake -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/External/catch /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/External/catch /builddir/build/BUILD/rdkit-Release_2023_03_2/External/catch/CMakeFiles/catch.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2023_03_2/External/INCHI-API/CMakeFiles/inchi_support.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f External/catch/CMakeFiles/catch.dir/build.make External/catch/CMakeFiles/catch.dir/build gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' gmake[2]: Nothing to be done for 'External/catch/CMakeFiles/catch.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2/External/INCHI-API && /usr/bin/cmake -E copy /builddir/build/BUILD/rdkit-Release_2023_03_2/External/INCHI-API/python/inchi.py /builddir/build/BUILD/rdkit-Release_2023_03_2/rdkit/Chem/inchi.py [ 0%] Built target catch gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/CMakeFiles/RDGeneral.dir/DependInfo.cmake "--color=" [ 0%] Built target inchi_support /usr/bin/gmake -f External/CoordGen/CMakeFiles/coordgen_support.dir/build.make External/CoordGen/CMakeFiles/coordgen_support.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/External/CoordGen /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/External/CoordGen /builddir/build/BUILD/rdkit-Release_2023_03_2/External/CoordGen/CMakeFiles/coordgen_support.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f External/CoordGen/CMakeFiles/coordgen_support.dir/build.make External/CoordGen/CMakeFiles/coordgen_support.dir/build [ 0%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/Invariant.cpp.o gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' gmake[2]: Nothing to be done for 'External/CoordGen/CMakeFiles/coordgen_support.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/RDGeneral/CMakeFiles/RDGeneral.dir/Invariant.cpp.o -MF CMakeFiles/RDGeneral.dir/Invariant.cpp.o.d -o CMakeFiles/RDGeneral.dir/Invariant.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/Invariant.cpp [ 0%] Built target coordgen_support annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/Invariant.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined /usr/bin/gmake -f External/RingFamilies/CMakeFiles/ringdecomposerlib_support.dir/build.make External/RingFamilies/CMakeFiles/ringdecomposerlib_support.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/External/RingFamilies /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/External/RingFamilies /builddir/build/BUILD/rdkit-Release_2023_03_2/External/RingFamilies/CMakeFiles/ringdecomposerlib_support.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f External/RingFamilies/CMakeFiles/ringdecomposerlib_support.dir/build.make External/RingFamilies/CMakeFiles/ringdecomposerlib_support.dir/build gmake[2]: Entering directory 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT External/GA/CMakeFiles/ga.dir/ga/IntegerStringChromosomePolicy.cpp.o -MF CMakeFiles/ga.dir/ga/IntegerStringChromosomePolicy.cpp.o.d -o CMakeFiles/ga.dir/ga/IntegerStringChromosomePolicy.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/External/GA/ga/IntegerStringChromosomePolicy.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/External/GA/ga/IntegerStringChromosomePolicy.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 1%] Building CXX object External/GA/CMakeFiles/ga.dir/ga/BinaryStringChromosomePolicy.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/External/GA && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 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-c /builddir/build/BUILD/rdkit-Release_2023_03_2/External/GA/ga/BinaryStringChromosomePolicy.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/External/GA/ga/BinaryStringChromosomePolicy.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 1%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/types.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security 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/usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/CMakeFiles/rdkitCatch.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/RDGeneral/CMakeFiles/rdkitCatch.dir/build.make Code/RDGeneral/CMakeFiles/rdkitCatch.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 1%] Building CXX object Code/RDGeneral/CMakeFiles/rdkitCatch.dir/catch_main.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdkitCatch_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/RDGeneral/CMakeFiles/rdkitCatch.dir/catch_main.cpp.o -MF CMakeFiles/rdkitCatch.dir/catch_main.cpp.o.d -o CMakeFiles/rdkitCatch.dir/catch_main.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/catch_main.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/catch_main.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 1%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/RDGeneralExceptions.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/RDGeneral/CMakeFiles/RDGeneral.dir/RDGeneralExceptions.cpp.o -MF CMakeFiles/RDGeneral.dir/RDGeneralExceptions.cpp.o.d -o CMakeFiles/RDGeneral.dir/RDGeneralExceptions.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/RDGeneralExceptions.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/RDGeneralExceptions.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/RDLog.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/RDGeneral/CMakeFiles/RDGeneral.dir/RDLog.cpp.o -MF CMakeFiles/RDGeneral.dir/RDLog.cpp.o.d -o CMakeFiles/RDGeneral.dir/RDLog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/RDLog.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/RDLog.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/RDGeneral/CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o -MF CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o.d -o CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/LocaleSwitcher.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/LocaleSwitcher.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/versions.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/RDGeneral/CMakeFiles/RDGeneral.dir/versions.cpp.o -MF CMakeFiles/RDGeneral.dir/versions.cpp.o.d -o CMakeFiles/RDGeneral.dir/versions.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/versions.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/versions.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 2%] Linking CXX shared library ../../lib/libRDKitRDGeneral.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDGeneral.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitRDGeneral.so.1 -o ../../lib/libRDKitRDGeneral.so.1.2023.03.2 CMakeFiles/RDGeneral.dir/Invariant.cpp.o CMakeFiles/RDGeneral.dir/types.cpp.o CMakeFiles/RDGeneral.dir/utils.cpp.o CMakeFiles/RDGeneral.dir/RDGeneralExceptions.cpp.o CMakeFiles/RDGeneral.dir/RDLog.cpp.o CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o CMakeFiles/RDGeneral.dir/versions.cpp.o -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDGeneral.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1 ../../lib/libRDKitRDGeneral.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 2%] Built target RDGeneral /usr/bin/gmake -f Code/RDStreams/CMakeFiles/RDStreams.dir/build.make Code/RDStreams/CMakeFiles/RDStreams.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDStreams /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDStreams /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDStreams/CMakeFiles/RDStreams.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/RDStreams/CMakeFiles/RDStreams.dir/build.make Code/RDStreams/CMakeFiles/RDStreams.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 2%] Building CXX object Code/RDStreams/CMakeFiles/RDStreams.dir/streams.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDStreams && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_RDSTREAMS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDStreams_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/RDStreams/CMakeFiles/RDStreams.dir/streams.cpp.o -MF CMakeFiles/RDStreams.dir/streams.cpp.o.d -o CMakeFiles/RDStreams.dir/streams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDStreams/streams.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDStreams/streams.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 2%] Linking CXX shared library ../../lib/libRDKitRDStreams.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDStreams && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDStreams.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitRDStreams.so.1 -o ../../lib/libRDKitRDStreams.so.1.2023.03.2 CMakeFiles/RDStreams.dir/streams.cpp.o /usr/lib64/libboost_iostreams.so.1.81.0 cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDStreams && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDStreams.so.1.2023.03.2 ../../lib/libRDKitRDStreams.so.1 ../../lib/libRDKitRDStreams.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 2%] Built target RDStreams /usr/bin/gmake -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make 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-DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/Numerics/CMakeFiles/testMatrices.dir/testMatrices.cpp.o -MF CMakeFiles/testMatrices.dir/testMatrices.cpp.o.d -o CMakeFiles/testMatrices.dir/testMatrices.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/testMatrices.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/testMatrices.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 2%] Linking CXX executable testMatrices cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMatrices.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testMatrices.dir/testMatrices.cpp.o -o testMatrices ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 2%] Built target testMatrices /usr/bin/gmake -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Catalogs /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Catalogs /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Catalogs/CMakeFiles/Catalogs.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 2%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/Catalog.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Catalogs && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DCatalogs_EXPORTS -DRDKIT_CATALOGS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/Catalogs/CMakeFiles/Catalogs.dir/Catalog.cpp.o -MF CMakeFiles/Catalogs.dir/Catalog.cpp.o.d -o CMakeFiles/Catalogs.dir/Catalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Catalogs/Catalog.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Catalogs/Catalog.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 2%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogParams.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Catalogs && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DCatalogs_EXPORTS -DRDKIT_CATALOGS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogParams.cpp.o -MF CMakeFiles/Catalogs.dir/CatalogParams.cpp.o.d -o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Catalogs/CatalogParams.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Catalogs/CatalogParams.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 2%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Catalogs && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DCatalogs_EXPORTS -DRDKIT_CATALOGS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o -MF CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o.d -o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Catalogs/CatalogEntry.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Catalogs/CatalogEntry.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 2%] Linking CXX shared library ../../lib/libRDKitCatalogs.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Catalogs && /usr/bin/cmake -E cmake_link_script CMakeFiles/Catalogs.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitCatalogs.so.1 -o ../../lib/libRDKitCatalogs.so.1.2023.03.2 CMakeFiles/Catalogs.dir/Catalog.cpp.o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Catalogs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../lib/libRDKitCatalogs.so.1 ../../lib/libRDKitCatalogs.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 2%] Built target Catalogs /usr/bin/gmake -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Query /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Query 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-grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/Query/CMakeFiles/testQuery.dir/test.cpp.o -MF CMakeFiles/testQuery.dir/test.cpp.o.d -o CMakeFiles/testQuery.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Query/test.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Query/test.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 2%] Linking CXX executable testQuery cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Query && /usr/bin/cmake -E cmake_link_script CMakeFiles/testQuery.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testQuery.dir/test.cpp.o -o testQuery ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 3%] Linking CXX shared library librdkitCatch.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdkitCatch.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC 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Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataManip/MetricMatrixCalc && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o -MF CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o.d -o CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataManip/MetricMatrixCalc/testMatCalc.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataManip/MetricMatrixCalc/testMatCalc.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 3%] Linking CXX executable testMatCalc cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataManip/MetricMatrixCalc && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMatCalc.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o -o testMatCalc ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 3%] Built target testMatCalc /usr/bin/gmake -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 3%] Building C object Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hc.c.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/Cluster/Murtagh && /usr/bin/gcc -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_HC_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Dhc_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hc.c.o -MF CMakeFiles/hc.dir/hc.c.o.d -o CMakeFiles/hc.dir/hc.c.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/Cluster/Murtagh/hc.c [ 3%] Building C object Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hcdriver.c.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/Cluster/Murtagh && /usr/bin/gcc -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_HC_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Dhc_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hcdriver.c.o -MF CMakeFiles/hc.dir/hcdriver.c.o.d -o CMakeFiles/hc.dir/hcdriver.c.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/Cluster/Murtagh/hcdriver.c [ 3%] Linking C shared library ../../../../lib/libRDKithc.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/Cluster/Murtagh && /usr/bin/cmake -E cmake_link_script CMakeFiles/hc.dir/link.txt --verbose=1 /usr/bin/gcc -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKithc.so.1 -o ../../../../lib/libRDKithc.so.1.2023.03.2 CMakeFiles/hc.dir/hc.c.o CMakeFiles/hc.dir/hcdriver.c.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/Cluster/Murtagh && /usr/bin/cmake -E cmake_symlink_library ../../../../lib/libRDKithc.so.1.2023.03.2 ../../../../lib/libRDKithc.so.1 ../../../../lib/libRDKithc.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 3%] Built target hc /usr/bin/gmake -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/CMakeFiles/DataStructs.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 3%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/BitVect.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/BitVect.cpp.o -MF CMakeFiles/DataStructs.dir/BitVect.cpp.o.d -o CMakeFiles/DataStructs.dir/BitVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/BitVect.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/BitVect.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 3%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o -MF CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o.d -o CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/SparseBitVect.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/SparseBitVect.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 3%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD 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CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/ExplicitBitVect.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/ExplicitBitVect.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 4%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/Utils.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/Utils.cpp.o -MF CMakeFiles/DataStructs.dir/Utils.cpp.o.d -o CMakeFiles/DataStructs.dir/Utils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Utils.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Utils.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 4%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/base64.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK 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Code/DataStructs/CMakeFiles/DataStructs.dir/base64.cpp.o -MF CMakeFiles/DataStructs.dir/base64.cpp.o.d -o CMakeFiles/DataStructs.dir/base64.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/base64.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/base64.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 4%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/BitOps.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/BitOps.cpp.o -MF CMakeFiles/DataStructs.dir/BitOps.cpp.o.d -o CMakeFiles/DataStructs.dir/BitOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/BitOps.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/BitOps.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 4%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o -MF CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o.d -o CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/DiscreteDistMat.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/DiscreteDistMat.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 4%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o -MF CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o.d -o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/DiscreteValueVect.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/DiscreteValueVect.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 4%] Built target rdkitCatch /usr/bin/gmake -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/EigenSolvers /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/EigenSolvers /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 4%] Building CXX object Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/EigenSolvers && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DEigenSolvers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_EIGENSOLVERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o -MF CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o.d -o CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/EigenSolvers/PowerEigenSolver.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/EigenSolvers/PowerEigenSolver.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 4%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/FPBReader.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/FPBReader.cpp.o -MF CMakeFiles/DataStructs.dir/FPBReader.cpp.o.d -o CMakeFiles/DataStructs.dir/FPBReader.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/FPBReader.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/FPBReader.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 5%] Linking CXX shared library ../../../lib/libRDKitEigenSolvers.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/EigenSolvers && /usr/bin/cmake -E cmake_link_script CMakeFiles/EigenSolvers.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitEigenSolvers.so.1 -o ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/EigenSolvers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1 ../../../lib/libRDKitEigenSolvers.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 5%] Built target EigenSolvers /usr/bin/gmake -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDBoost /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDBoost /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDBoost/CMakeFiles/RDBoost.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 5%] Building CXX object Code/RDBoost/CMakeFiles/RDBoost.dir/Wrap.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDBoost && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DRDBoost_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDBOOST_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG 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-ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o -MF CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o.d -o CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/MultiFPBReader.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/MultiFPBReader.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 5%] Linking CXX shared library ../../lib/libRDKitRDBoost.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDBoost && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDBoost.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitRDBoost.so.1 -o ../../lib/libRDKitRDBoost.so.1.2023.03.2 CMakeFiles/RDBoost.dir/Wrap.cpp.o ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.81.0 cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDBoost && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../lib/libRDKitRDBoost.so.1 ../../lib/libRDKitRDBoost.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 5%] Built target RDBoost /usr/bin/gmake -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral 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-g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/RDGeneral/CMakeFiles/testDict.dir/testDict.cpp.o -MF CMakeFiles/testDict.dir/testDict.cpp.o.d -o CMakeFiles/testDict.dir/testDict.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/testDict.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/testDict.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 5%] Linking CXX shared library ../../lib/libRDKitDataStructs.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/DataStructs.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitDataStructs.so.1 -o ../../lib/libRDKitDataStructs.so.1.2023.03.2 CMakeFiles/DataStructs.dir/BitVect.cpp.o CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o CMakeFiles/DataStructs.dir/Utils.cpp.o CMakeFiles/DataStructs.dir/base64.cpp.o CMakeFiles/DataStructs.dir/BitOps.cpp.o CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o CMakeFiles/DataStructs.dir/FPBReader.cpp.o CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1 ../../lib/libRDKitDataStructs.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 5%] Built target DataStructs /usr/bin/gmake -f Code/RDGeneral/CMakeFiles/testRDValue.dir/build.make Code/RDGeneral/CMakeFiles/testRDValue.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/CMakeFiles/testRDValue.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/RDGeneral/CMakeFiles/testRDValue.dir/build.make Code/RDGeneral/CMakeFiles/testRDValue.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 5%] Building CXX object Code/RDGeneral/CMakeFiles/testRDValue.dir/testRDValue.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/RDGeneral/CMakeFiles/testRDValue.dir/testRDValue.cpp.o -MF CMakeFiles/testRDValue.dir/testRDValue.cpp.o.d -o CMakeFiles/testRDValue.dir/testRDValue.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/testRDValue.cpp annobin: 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-specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testDict.dir/testDict.cpp.o -o testDict ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 5%] Built target testDict /usr/bin/gmake -f Code/RDGeneral/CMakeFiles/testConcurrentQueue.dir/build.make Code/RDGeneral/CMakeFiles/testConcurrentQueue.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/CMakeFiles/testConcurrentQueue.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/RDGeneral/CMakeFiles/testConcurrentQueue.dir/testConcurrentQueue.cpp.o -MF CMakeFiles/testConcurrentQueue.dir/testConcurrentQueue.cpp.o.d -o CMakeFiles/testConcurrentQueue.dir/testConcurrentQueue.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/testConcurrentQueue.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/testConcurrentQueue.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 5%] Linking CXX executable testRDValue cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/testRDValue.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testRDValue.dir/testRDValue.cpp.o -o testRDValue ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 5%] Linking CXX executable testConcurrentQueue cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/testConcurrentQueue.dir/link.txt --verbose=1 /usr/bin/g++ -O2 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Code/RDGeneral/CMakeFiles/dictTestsCatch.dir/build.make Code/RDGeneral/CMakeFiles/dictTestsCatch.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/CMakeFiles/dictTestsCatch.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/RDGeneral/CMakeFiles/dictTestsCatch.dir/build.make Code/RDGeneral/CMakeFiles/dictTestsCatch.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 5%] Building CXX object Code/RDGeneral/CMakeFiles/dictTestsCatch.dir/catch_dict.cpp.o cd 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-fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/RDGeneral/CMakeFiles/dictTestsCatch.dir/catch_dict.cpp.o -MF CMakeFiles/dictTestsCatch.dir/catch_dict.cpp.o.d -o CMakeFiles/dictTestsCatch.dir/catch_dict.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/catch_dict.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral/catch_dict.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 5%] Built target testRDValue /usr/bin/gmake -f Code/RDGeneral/CMakeFiles/logTestsCatch.dir/build.make Code/RDGeneral/CMakeFiles/logTestsCatch.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2023_03_2 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dictTestsCatch cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/dictTestsCatch.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/dictTestsCatch.dir/catch_dict.cpp.o -o dictTestsCatch librdkitCatch.so 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-Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o -o testDataStructs ../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 6%] Built target testDataStructs /usr/bin/gmake -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs 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Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 6%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DataStructs.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DataStructs.cpp.o -MF CMakeFiles/cDataStructs.dir/DataStructs.cpp.o.d -o CMakeFiles/cDataStructs.dir/DataStructs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/DataStructs.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/DataStructs.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 6%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o -MF CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o.d -o CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/DiscreteValueVect.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/DiscreteValueVect.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 6%] Built target rdBase /usr/bin/gmake -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataManip/MetricMatrixCalc/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataManip/MetricMatrixCalc/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 6%] Building CXX object Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataManip/MetricMatrixCalc/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMetricMatrixCalc_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o -MF CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o.d -o CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataManip/MetricMatrixCalc/Wrap/rdMetricMatrixCalc.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataManip/MetricMatrixCalc/Wrap/rdMetricMatrixCalc.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 7%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o -MF CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o.d -o CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp: In instantiation of 'boost::python::list {anonymous}::BulkDice(const T&, boost::python::list, bool) [with T = RDKit::SparseIntVect]': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:190:16: required from 'static void sparseIntVec_wrapper::wrapOne(const char*) [with IndexType = int]' /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:219:26: required from here /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:77:14: warning: possibly dangling reference to a temporary [-Wdangling-reference] 77 | const T &siv2 = python::extract(sivs[i])(); | ^~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:77:48: note: the temporary was destroyed at the end of the full expression 'boost::python::extract >(boost::python::api::proxy::operator boost::python::api::object() const [with Policies = boost::python::api::item_policies]()).boost::python::extract >::.boost::python::converter::extract_rvalue >::operator()()' 77 | const T &siv2 = python::extract(sivs[i])(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp: In instantiation of 'boost::python::list {anonymous}::BulkTanimoto(const T&, boost::python::list, bool) [with T = RDKit::SparseIntVect]': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:200:16: required from 'static void sparseIntVec_wrapper::wrapOne(const char*) [with IndexType = int]' /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:219:26: required from here /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:90:14: warning: possibly dangling reference to a temporary [-Wdangling-reference] 90 | const T &siv2 = python::extract(sivs[i])(); | ^~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:90:48: note: the temporary was destroyed at the end of the full expression 'boost::python::extract >(boost::python::api::proxy::operator boost::python::api::object() const [with Policies = boost::python::api::item_policies]()).boost::python::extract >::.boost::python::converter::extract_rvalue >::operator()()' 90 | const T &siv2 = python::extract(sivs[i])(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp: In instantiation of 'boost::python::list {anonymous}::BulkTversky(const T&, boost::python::list, double, double, bool) [with T = RDKit::SparseIntVect]': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:211:16: required from 'static void sparseIntVec_wrapper::wrapOne(const char*) [with IndexType = int]' /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:219:26: required from here /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:104:14: warning: possibly dangling reference to a temporary [-Wdangling-reference] 104 | const T &siv2 = python::extract(sivs[i])(); | ^~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:104:48: note: the temporary was destroyed at the end of the full expression 'boost::python::extract >(boost::python::api::proxy::operator boost::python::api::object() const [with Policies = boost::python::api::item_policies]()).boost::python::extract >::.boost::python::converter::extract_rvalue >::operator()()' 104 | const T &siv2 = python::extract(sivs[i])(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp: In instantiation of 'boost::python::list {anonymous}::BulkDice(const T&, boost::python::list, bool) [with T = RDKit::SparseIntVect]': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:190:16: required from 'static void sparseIntVec_wrapper::wrapOne(const char*) [with IndexType = long int]' /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:220:28: required from here /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:77:14: warning: possibly dangling reference to a temporary [-Wdangling-reference] 77 | const T &siv2 = python::extract(sivs[i])(); | ^~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:77:48: note: the temporary was destroyed at the end of the full expression 'boost::python::extract >(boost::python::api::proxy::operator boost::python::api::object() const [with Policies = boost::python::api::item_policies]()).boost::python::extract >::.boost::python::converter::extract_rvalue >::operator()()' 77 | const T &siv2 = python::extract(sivs[i])(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp: In instantiation of 'boost::python::list {anonymous}::BulkTanimoto(const T&, boost::python::list, bool) [with T = RDKit::SparseIntVect]': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:200:16: required from 'static void sparseIntVec_wrapper::wrapOne(const char*) [with IndexType = long int]' /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:220:28: required from here /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:90:14: warning: possibly dangling reference to a temporary [-Wdangling-reference] 90 | const T &siv2 = python::extract(sivs[i])(); | ^~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:90:48: note: the temporary was destroyed at the end of the full expression 'boost::python::extract >(boost::python::api::proxy::operator boost::python::api::object() const [with Policies = boost::python::api::item_policies]()).boost::python::extract >::.boost::python::converter::extract_rvalue >::operator()()' 90 | const T &siv2 = python::extract(sivs[i])(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp: In instantiation of 'boost::python::list {anonymous}::BulkTversky(const T&, boost::python::list, double, double, bool) [with T = RDKit::SparseIntVect]': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:211:16: required from 'static void sparseIntVec_wrapper::wrapOne(const char*) [with IndexType = long int]' /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:220:28: required from here /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:104:14: warning: possibly dangling reference to a temporary [-Wdangling-reference] 104 | const T &siv2 = python::extract(sivs[i])(); | ^~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:104:48: note: the temporary was destroyed at the end of the full expression 'boost::python::extract >(boost::python::api::proxy::operator boost::python::api::object() const [with Policies = boost::python::api::item_policies]()).boost::python::extract >::.boost::python::converter::extract_rvalue >::operator()()' 104 | const T &siv2 = python::extract(sivs[i])(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp: In instantiation of 'boost::python::list {anonymous}::BulkDice(const T&, boost::python::list, bool) [with T = RDKit::SparseIntVect]': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:190:16: required from 'static void sparseIntVec_wrapper::wrapOne(const char*) [with IndexType = unsigned int]' /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:221:27: required from here /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:77:14: warning: possibly dangling reference to a temporary [-Wdangling-reference] 77 | const T &siv2 = python::extract(sivs[i])(); | ^~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:77:48: note: the temporary was destroyed at the end of the full expression 'boost::python::extract >(boost::python::api::proxy::operator boost::python::api::object() const [with Policies = boost::python::api::item_policies]()).boost::python::extract >::.boost::python::converter::extract_rvalue >::operator()()' 77 | const T &siv2 = python::extract(sivs[i])(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp: In instantiation of 'boost::python::list {anonymous}::BulkTanimoto(const T&, boost::python::list, bool) [with T = RDKit::SparseIntVect]': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:200:16: required from 'static void sparseIntVec_wrapper::wrapOne(const char*) [with IndexType = unsigned int]' /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:221:27: required from here /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:90:14: warning: possibly dangling reference to a temporary [-Wdangling-reference] 90 | const T &siv2 = python::extract(sivs[i])(); | ^~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:90:48: note: the temporary was destroyed at the end of the full expression 'boost::python::extract >(boost::python::api::proxy::operator boost::python::api::object() const [with Policies = boost::python::api::item_policies]()).boost::python::extract >::.boost::python::converter::extract_rvalue >::operator()()' 90 | const T &siv2 = python::extract(sivs[i])(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp: In instantiation of 'boost::python::list {anonymous}::BulkTversky(const T&, boost::python::list, double, double, bool) [with T = RDKit::SparseIntVect]': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:211:16: required from 'static void sparseIntVec_wrapper::wrapOne(const char*) [with IndexType = unsigned int]' /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:221:27: required from here /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:104:14: warning: possibly dangling reference to a temporary [-Wdangling-reference] 104 | const T &siv2 = python::extract(sivs[i])(); | ^~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:104:48: note: the temporary was destroyed at the end of the full expression 'boost::python::extract >(boost::python::api::proxy::operator boost::python::api::object() const [with Policies = boost::python::api::item_policies]()).boost::python::extract >::.boost::python::converter::extract_rvalue >::operator()()' 104 | const T &siv2 = python::extract(sivs[i])(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp: In instantiation of 'boost::python::list {anonymous}::BulkDice(const T&, boost::python::list, bool) [with T = RDKit::SparseIntVect]': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:190:16: required from 'static void sparseIntVec_wrapper::wrapOne(const char*) [with IndexType = long unsigned int]' /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:222:29: required from here /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:77:14: warning: possibly dangling reference to a temporary [-Wdangling-reference] 77 | const T &siv2 = python::extract(sivs[i])(); | ^~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:77:48: note: the temporary was destroyed at the end of the full expression 'boost::python::extract >(boost::python::api::proxy::operator boost::python::api::object() const [with Policies = boost::python::api::item_policies]()).boost::python::extract >::.boost::python::converter::extract_rvalue >::operator()()' 77 | const T &siv2 = python::extract(sivs[i])(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp: In instantiation of 'boost::python::list {anonymous}::BulkTanimoto(const T&, boost::python::list, bool) [with T = RDKit::SparseIntVect]': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:200:16: required from 'static void sparseIntVec_wrapper::wrapOne(const char*) [with IndexType = long unsigned int]' /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:222:29: required from here /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:90:14: warning: possibly dangling reference to a temporary [-Wdangling-reference] 90 | const T &siv2 = python::extract(sivs[i])(); | ^~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:90:48: note: the temporary was destroyed at the end of the full expression 'boost::python::extract >(boost::python::api::proxy::operator boost::python::api::object() const [with Policies = boost::python::api::item_policies]()).boost::python::extract >::.boost::python::converter::extract_rvalue >::operator()()' 90 | const T &siv2 = python::extract(sivs[i])(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp: In instantiation of 'boost::python::list {anonymous}::BulkTversky(const T&, boost::python::list, double, double, bool) [with T = RDKit::SparseIntVect]': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:211:16: required from 'static void sparseIntVec_wrapper::wrapOne(const char*) [with IndexType = long unsigned int]' /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:222:29: required from here /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:104:14: warning: possibly dangling reference to a temporary [-Wdangling-reference] 104 | const T &siv2 = python::extract(sivs[i])(); | ^~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp:104:48: note: the temporary was destroyed at the end of the full expression 'boost::python::extract >(boost::python::api::proxy::operator boost::python::api::object() const [with Policies = boost::python::api::item_policies]()).boost::python::extract >::.boost::python::converter::extract_rvalue >::operator()()' 104 | const T &siv2 = python::extract(sivs[i])(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ [ 7%] Linking CXX shared module ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataManip/MetricMatrixCalc/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMetricMatrixCalc.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.81.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 7%] Built target rdMetricMatrixCalc /usr/bin/gmake -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 7%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/SimDivPickers && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_SIMDIVPICKERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o -MF CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o.d -o CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/SimDivPickers/DistPicker.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/SimDivPickers/DistPicker.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 7%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/SimDivPickers && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_SIMDIVPICKERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security 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Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o -MF CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o.d -o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/SimDivPickers/HierarchicalClusterPicker.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/SimDivPickers/HierarchicalClusterPicker.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 7%] Linking CXX shared library ../../lib/libRDKitSimDivPickers.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/SimDivPickers && /usr/bin/cmake -E cmake_link_script CMakeFiles/SimDivPickers.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitSimDivPickers.so.1 -o ../../lib/libRDKitSimDivPickers.so.1.2023.03.2 CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o ../../lib/libRDKithc.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/SimDivPickers && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitSimDivPickers.so.1.2023.03.2 ../../lib/libRDKitSimDivPickers.so.1 ../../lib/libRDKitSimDivPickers.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 7%] Built target SimDivPickers /usr/bin/gmake -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 7%] Building CXX object Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/Clustering.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/Cluster/Murtagh && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DClustering_EXPORTS -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic 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gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 7%] Building CXX object Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/InfoTheory && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DInfoTheory_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_INFOTHEORY_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic 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/builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/wrap_SparseBV.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/wrap_SparseBV.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 7%] Linking CXX shared library ../../../lib/libRDKitInfoTheory.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/InfoTheory && /usr/bin/cmake -E cmake_link_script CMakeFiles/InfoTheory.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitInfoTheory.so.1 -o ../../../lib/libRDKitInfoTheory.so.1.2023.03.2 CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/InfoTheory && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitInfoTheory.so.1.2023.03.2 ../../../lib/libRDKitInfoTheory.so.1 ../../../lib/libRDKitInfoTheory.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 7%] Built target InfoTheory /usr/bin/gmake -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/CMakeFiles/RDGeometryLib.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 7%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/point.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS 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/builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/point.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/point.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 7%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o -MF CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o.d -o CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/Transform2D.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/Transform2D.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 7%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o -MF CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o.d -o CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/wrap_ExplicitBV.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/wrap_ExplicitBV.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 7%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o -MF CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o.d -o CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/Transform3D.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/Transform3D.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 7%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/Geometry/CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o -MF CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o.d -o CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/UniformGrid3D.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/UniformGrid3D.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 7%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o -MF CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o.d -o CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/wrap_BitOps.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/wrap_BitOps.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 8%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/Geometry/CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o -MF CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o.d -o CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/GridUtils.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/GridUtils.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 8%] Linking CXX shared library ../../lib/libRDKitRDGeometryLib.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDGeometryLib.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall 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../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1 ../../lib/libRDKitRDGeometryLib.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 8%] Built target RDGeometryLib /usr/bin/gmake -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/SimDivPickers 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/usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o -MF CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o.d -o CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/SimDivPickers/testPickers.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/SimDivPickers/testPickers.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 9%] Linking CXX executable testSimDivPickers cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/SimDivPickers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSimDivPickers.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o -o testSimDivPickers ../../lib/libRDKitSimDivPickers.so.1.2023.03.2 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/SimDivPickers/CMakeFiles/pickersTestsCatch.dir/catch_tests.cpp.o -MF CMakeFiles/pickersTestsCatch.dir/catch_tests.cpp.o.d -o CMakeFiles/pickersTestsCatch.dir/catch_tests.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/SimDivPickers/catch_tests.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/SimDivPickers/catch_tests.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 9%] Linking CXX executable pickersTestsCatch cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/SimDivPickers && /usr/bin/cmake -E cmake_link_script CMakeFiles/pickersTestsCatch.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/pickersTestsCatch.dir/catch_tests.cpp.o -o pickersTestsCatch ../RDGeneral/librdkitCatch.so ../../lib/libRDKitSimDivPickers.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../lib/libRDKithc.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory 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Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 10%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/SimDivPickers/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong 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CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o.d -o CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/wrap_FPB.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/wrap_FPB.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 10%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/LeaderPicker.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/SimDivPickers/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto 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Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DataStructs/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection 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CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDBoost.so.1.2023.03.2 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.81.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 10%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/SimDivPickers/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 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CMakeFiles/rdSimDivPickers.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../rdkit/SimDivFilters/rdSimDivPickers.so CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/LeaderPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o ../../../lib/libRDKitSimDivPickers.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../lib/libRDKithc.so.1.2023.03.2 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.81.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 10%] Built target rdSimDivPickers /usr/bin/gmake -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 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-fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../rdkit/ML/Data/cQuantize.so CMakeFiles/cQuantize.dir/cQuantize.cpp.o ../../../lib/libRDKitInfoTheory.so.1.2023.03.2 ../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.81.0 gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 10%] Built target cQuantize /usr/bin/gmake -f 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Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ChemicalFeatures && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DChemicalFeatures_EXPORTS -DRDKIT_CHEMICALFEATURES_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o -MF CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o.d -o CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ChemicalFeatures/FreeChemicalFeature.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ChemicalFeatures/FreeChemicalFeature.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 10%] Linking CXX shared library ../../lib/libRDKitChemicalFeatures.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemicalFeatures.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitChemicalFeatures.so.1 -o ../../lib/libRDKitChemicalFeatures.so.1.2023.03.2 CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ChemicalFeatures && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitChemicalFeatures.so.1.2023.03.2 ../../lib/libRDKitChemicalFeatures.so.1 ../../lib/libRDKitChemicalFeatures.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 10%] Built target ChemicalFeatures /usr/bin/gmake -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CMakeFiles/GraphMol.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 10%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Atom.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Atom.cpp.o -MF CMakeFiles/GraphMol.dir/Atom.cpp.o.d -o CMakeFiles/GraphMol.dir/Atom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Atom.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Atom.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 10%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/InfoTheory/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD 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CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o.d -o CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/InfoTheory/Wrap/rdInfoTheory.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/InfoTheory/Wrap/rdInfoTheory.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 10%] Linking CXX shared module ../../../../rdkit/ML/InfoTheory/rdInfoTheory.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ML/InfoTheory/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdInfoTheory.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/ML/InfoTheory/rdInfoTheory.so CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o ../../../../lib/libRDKitInfoTheory.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.81.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 10%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryAtom.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/QueryAtom.cpp.o -MF CMakeFiles/GraphMol.dir/QueryAtom.cpp.o.d -o CMakeFiles/GraphMol.dir/QueryAtom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/QueryAtom.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/QueryAtom.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 10%] Built target rdInfoTheory /usr/bin/gmake -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/CMakeFiles/testTransforms.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 10%] Building CXX object Code/Geometry/CMakeFiles/testTransforms.dir/testTransforms.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/Geometry/CMakeFiles/testTransforms.dir/testTransforms.cpp.o -MF CMakeFiles/testTransforms.dir/testTransforms.cpp.o.d -o CMakeFiles/testTransforms.dir/testTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/testTransforms.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/testTransforms.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 10%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryBond.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/QueryBond.cpp.o -MF CMakeFiles/GraphMol.dir/QueryBond.cpp.o.d -o CMakeFiles/GraphMol.dir/QueryBond.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/QueryBond.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/QueryBond.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 10%] Linking CXX executable testTransforms cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/testTransforms.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testTransforms.dir/testTransforms.cpp.o -o testTransforms ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 10%] Built target testTransforms /usr/bin/gmake -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/CMakeFiles/testGrid.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 10%] Building CXX object Code/Geometry/CMakeFiles/testGrid.dir/testGrid.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 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/builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/testGrid.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/testGrid.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 11%] Linking CXX executable testGrid cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/testGrid.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testGrid.dir/testGrid.cpp.o -o testGrid ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 12%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Bond.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g 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/builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/geometryTestsCatch.dir/catch_tests.cpp.o -o geometryTestsCatch ../RDGeneral/librdkitCatch.so ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 12%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolOps.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED 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Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 12%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/Point.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/Point.cpp.o -MF CMakeFiles/rdGeometry.dir/Point.cpp.o.d -o CMakeFiles/rdGeometry.dir/Point.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/Wrap/Point.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/Wrap/Point.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 12%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK 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CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o.d -o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/Wrap/UniformGrid3D.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/Wrap/UniformGrid3D.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 12%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/FindRings.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/FindRings.cpp.o -MF CMakeFiles/GraphMol.dir/FindRings.cpp.o.d -o CMakeFiles/GraphMol.dir/FindRings.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FindRings.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FindRings.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FindRings.cpp: In function 'void RDKit::MolOps::findRingFamilies(const RDKit::ROMol&)': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FindRings.cpp:1348:36: warning: unused parameter 'mol' [-Wunused-parameter] 1348 | void findRingFamilies(const ROMol &mol) { | ~~~~~~~~~~~~~^~~ [ 13%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security 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-DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/ROMol.cpp.o -MF CMakeFiles/GraphMol.dir/ROMol.cpp.o.d -o CMakeFiles/GraphMol.dir/ROMol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ROMol.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ROMol.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 13%] Linking CXX shared module ../../../rdkit/Geometry/rdGeometry.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdGeometry.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../rdkit/Geometry/rdGeometry.so CMakeFiles/rdGeometry.dir/Point.cpp.o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.81.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 13%] Built target rdGeometry /usr/bin/gmake -f Code/Numerics/CMakeFiles/testConrec.dir/build.make Code/Numerics/CMakeFiles/testConrec.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/CMakeFiles/testConrec.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/Numerics/CMakeFiles/testConrec.dir/build.make Code/Numerics/CMakeFiles/testConrec.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 13%] Building CXX object Code/Numerics/CMakeFiles/testConrec.dir/testConrec.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC 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-isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/RWMol.cpp.o -MF CMakeFiles/GraphMol.dir/RWMol.cpp.o.d -o CMakeFiles/GraphMol.dir/RWMol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/RWMol.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/RWMol.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 13%] Linking CXX executable testConrec cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics && /usr/bin/cmake -E cmake_link_script CMakeFiles/testConrec.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testConrec.dir/testConrec.cpp.o -o testConrec ../RDGeneral/librdkitCatch.so ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/Numerics/Alignment/CMakeFiles/Alignment.dir/AlignPoints.cpp.o -MF CMakeFiles/Alignment.dir/AlignPoints.cpp.o.d -o CMakeFiles/Alignment.dir/AlignPoints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment/AlignPoints.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment/AlignPoints.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 13%] Linking CXX shared library ../../../lib/libRDKitAlignment.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_link_script CMakeFiles/Alignment.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitAlignment.so.1 -o ../../../lib/libRDKitAlignment.so.1.2023.03.2 CMakeFiles/Alignment.dir/AlignPoints.cpp.o ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitAlignment.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1 ../../../lib/libRDKitAlignment.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 13%] Built target Alignment /usr/bin/gmake -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ChemicalFeatures 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-I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o -MF CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o.d -o CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ChemicalFeatures/testChemicalFeatures.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ChemicalFeatures/testChemicalFeatures.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 13%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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testChemicalFeatures /usr/bin/gmake -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 13%] Building CXX object Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/testAlignment.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/testAlignment.cpp.o -MF CMakeFiles/testAlignment.dir/testAlignment.cpp.o.d -o CMakeFiles/testAlignment.dir/testAlignment.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment/testAlignment.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment/testAlignment.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 13%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/atomic_data.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/atomic_data.cpp.o -MF CMakeFiles/GraphMol.dir/atomic_data.cpp.o.d -o CMakeFiles/GraphMol.dir/atomic_data.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/atomic_data.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/atomic_data.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 13%] Linking CXX executable testAlignment cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_link_script CMakeFiles/testAlignment.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testAlignment.dir/testAlignment.cpp.o -o testAlignment ../../../lib/libRDKitAlignment.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 13%] Built target testAlignment /usr/bin/gmake -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 13%] Building CXX object Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdAlignment_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o -MF CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o.d -o CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment/Wrap/rdAlignment.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Alignment/Wrap/rdAlignment.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 13%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryOps.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Numerics/rdAlignment.so CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o ../../../../lib/libRDKitAlignment.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.81.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 13%] Built target rdAlignment [ 14%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolPickler.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/MolPickler.cpp.o -MF CMakeFiles/GraphMol.dir/MolPickler.cpp.o.d -o CMakeFiles/GraphMol.dir/MolPickler.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolPickler.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolPickler.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 14%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Canon.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Canon.cpp.o -MF CMakeFiles/GraphMol.dir/Canon.cpp.o.d -o CMakeFiles/GraphMol.dir/Canon.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Canon.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Canon.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolPickler.cpp: In instantiation of 'static RDKit::Atom* RDKit::MolPickler::_addAtomFromPickle(std::istream&, RDKit::ROMol*, RDGeom::Point3D&, int, bool) [with T = int; std::istream = std::basic_istream]': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolPickler.cpp:1081:39: required from 'static void RDKit::MolPickler::_depickle(std::istream&, RDKit::ROMol*, int, int, unsigned int) [with T = int; std::istream = std::basic_istream]' /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolPickler.cpp:854:27: required from here /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolPickler.cpp:1666:37: warning: comparison is always false due to limited range of data type [-Wtype-limits] 1666 | if ((tmpChar < 0 || tmpChar > 127) && version > 9000) { | ~~~~~~~~^~~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolPickler.cpp: In instantiation of 'static RDKit::Atom* RDKit::MolPickler::_addAtomFromPickle(std::istream&, RDKit::ROMol*, RDGeom::Point3D&, int, bool) [with T = unsigned char; std::istream = std::basic_istream]': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolPickler.cpp:1081:39: required from 'static void RDKit::MolPickler::_depickle(std::istream&, RDKit::ROMol*, int, int, unsigned int) [with T = unsigned char; std::istream = std::basic_istream]' /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolPickler.cpp:856:33: required from here /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolPickler.cpp:1666:37: warning: comparison is always false due to limited range of data type [-Wtype-limits] [ 14%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AtomIterators.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/AtomIterators.cpp.o -MF CMakeFiles/GraphMol.dir/AtomIterators.cpp.o.d -o CMakeFiles/GraphMol.dir/AtomIterators.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/AtomIterators.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/AtomIterators.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 14%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/BondIterators.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/BondIterators.cpp.o -MF CMakeFiles/GraphMol.dir/BondIterators.cpp.o.d -o CMakeFiles/GraphMol.dir/BondIterators.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/BondIterators.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/BondIterators.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 14%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Aromaticity.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Aromaticity.cpp.o -MF CMakeFiles/GraphMol.dir/Aromaticity.cpp.o.d -o CMakeFiles/GraphMol.dir/Aromaticity.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Aromaticity.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Aromaticity.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 14%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Kekulize.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Kekulize.cpp.o -MF CMakeFiles/GraphMol.dir/Kekulize.cpp.o.d -o CMakeFiles/GraphMol.dir/Kekulize.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Kekulize.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Kekulize.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 14%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o -MF CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o.d -o CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ConjugHybrid.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ConjugHybrid.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 14%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AddHs.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK 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CMakeFiles/GraphMol.dir/AddHs.cpp.o.d -o CMakeFiles/GraphMol.dir/AddHs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/AddHs.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/AddHs.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 15%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Matrices.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Matrices.cpp.o -MF CMakeFiles/GraphMol.dir/Matrices.cpp.o.d -o CMakeFiles/GraphMol.dir/Matrices.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Matrices.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Matrices.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 15%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Chirality.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Chirality.cpp.o -MF CMakeFiles/GraphMol.dir/Chirality.cpp.o.d -o CMakeFiles/GraphMol.dir/Chirality.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Chirality.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Chirality.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 15%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/RingInfo.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/RingInfo.cpp.o -MF CMakeFiles/GraphMol.dir/RingInfo.cpp.o.d -o CMakeFiles/GraphMol.dir/RingInfo.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/RingInfo.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/RingInfo.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 15%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Conformer.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Conformer.cpp.o -MF CMakeFiles/GraphMol.dir/Conformer.cpp.o.d -o CMakeFiles/GraphMol.dir/Conformer.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Conformer.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Conformer.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 15%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Renumber.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Renumber.cpp.o -MF CMakeFiles/GraphMol.dir/Renumber.cpp.o.d -o CMakeFiles/GraphMol.dir/Renumber.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Renumber.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Renumber.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 15%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o -MF CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o.d -o CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/AdjustQuery.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/AdjustQuery.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 15%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Resonance.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Resonance.cpp.o -MF CMakeFiles/GraphMol.dir/Resonance.cpp.o.d -o CMakeFiles/GraphMol.dir/Resonance.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Resonance.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Resonance.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 15%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/StereoGroup.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/StereoGroup.cpp.o -MF CMakeFiles/GraphMol.dir/StereoGroup.cpp.o.d -o CMakeFiles/GraphMol.dir/StereoGroup.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/StereoGroup.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/StereoGroup.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 15%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/new_canon.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/new_canon.cpp.o -MF CMakeFiles/GraphMol.dir/new_canon.cpp.o.d -o CMakeFiles/GraphMol.dir/new_canon.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/new_canon.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/new_canon.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 16%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/SubstanceGroup.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/SubstanceGroup.cpp.o -MF CMakeFiles/GraphMol.dir/SubstanceGroup.cpp.o.d -o CMakeFiles/GraphMol.dir/SubstanceGroup.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstanceGroup.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstanceGroup.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 16%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/FindStereo.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/FindStereo.cpp.o -MF CMakeFiles/GraphMol.dir/FindStereo.cpp.o.d -o CMakeFiles/GraphMol.dir/FindStereo.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FindStereo.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FindStereo.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 16%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MonomerInfo.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/MonomerInfo.cpp.o -MF CMakeFiles/GraphMol.dir/MonomerInfo.cpp.o.d -o CMakeFiles/GraphMol.dir/MonomerInfo.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MonomerInfo.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MonomerInfo.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 16%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/NontetrahedralStereo.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/NontetrahedralStereo.cpp.o -MF CMakeFiles/GraphMol.dir/NontetrahedralStereo.cpp.o.d -o CMakeFiles/GraphMol.dir/NontetrahedralStereo.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/NontetrahedralStereo.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/NontetrahedralStereo.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 16%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/WedgeBonds.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/WedgeBonds.cpp.o -MF CMakeFiles/GraphMol.dir/WedgeBonds.cpp.o.d -o CMakeFiles/GraphMol.dir/WedgeBonds.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/WedgeBonds.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/WedgeBonds.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 16%] Linking CXX shared library ../../lib/libRDKitGraphMol.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/GraphMol.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitGraphMol.so.1 -o ../../lib/libRDKitGraphMol.so.1.2023.03.2 CMakeFiles/GraphMol.dir/Atom.cpp.o CMakeFiles/GraphMol.dir/QueryAtom.cpp.o CMakeFiles/GraphMol.dir/QueryBond.cpp.o CMakeFiles/GraphMol.dir/Bond.cpp.o CMakeFiles/GraphMol.dir/MolOps.cpp.o CMakeFiles/GraphMol.dir/FindRings.cpp.o CMakeFiles/GraphMol.dir/ROMol.cpp.o CMakeFiles/GraphMol.dir/RWMol.cpp.o CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o CMakeFiles/GraphMol.dir/atomic_data.cpp.o CMakeFiles/GraphMol.dir/QueryOps.cpp.o CMakeFiles/GraphMol.dir/MolPickler.cpp.o CMakeFiles/GraphMol.dir/Canon.cpp.o CMakeFiles/GraphMol.dir/AtomIterators.cpp.o CMakeFiles/GraphMol.dir/BondIterators.cpp.o CMakeFiles/GraphMol.dir/Aromaticity.cpp.o CMakeFiles/GraphMol.dir/Kekulize.cpp.o CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o CMakeFiles/GraphMol.dir/AddHs.cpp.o CMakeFiles/GraphMol.dir/Matrices.cpp.o CMakeFiles/GraphMol.dir/Chirality.cpp.o CMakeFiles/GraphMol.dir/RingInfo.cpp.o CMakeFiles/GraphMol.dir/Conformer.cpp.o CMakeFiles/GraphMol.dir/Renumber.cpp.o CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o CMakeFiles/GraphMol.dir/Resonance.cpp.o CMakeFiles/GraphMol.dir/StereoGroup.cpp.o CMakeFiles/GraphMol.dir/new_canon.cpp.o CMakeFiles/GraphMol.dir/SubstanceGroup.cpp.o CMakeFiles/GraphMol.dir/FindStereo.cpp.o CMakeFiles/GraphMol.dir/MonomerInfo.cpp.o CMakeFiles/GraphMol.dir/NontetrahedralStereo.cpp.o CMakeFiles/GraphMol.dir/WedgeBonds.cpp.o ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl In function 'add_edge', inlined from 'addBond' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/RWMol.cpp:396:42: /usr/include/boost/graph/detail/adjacency_list.hpp:2271:20: warning: 'p' may be used uninitialized [-Wmaybe-uninitialized] 2271 | return add_edge(u, v, p, g_); | ^ /usr/include/boost/graph/detail/adjacency_list.hpp: In member function 'addBond': /usr/include/boost/graph/detail/adjacency_list.hpp:2252:60: note: by argument 3 of type 'struct Bond * const &' to 'add_edge' declared here 2252 | inline std::pair< typename Config::edge_descriptor, bool > add_edge( | ^ /usr/include/boost/graph/detail/adjacency_list.hpp:2270:41: note: 'p' declared here 2270 | typename Config::edge_property_type p; | ^ cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1 ../../lib/libRDKitGraphMol.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 16%] Built target GraphMol /usr/bin/gmake -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/depend /usr/bin/gmake -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 16%] Building CXX object Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolTransforms_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLTRANSFORMS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o -MF CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o.d -o CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms/MolTransforms.cpp [ 16%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o -MF CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o.d -o CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/SmilesParse.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms/MolTransforms.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/SmilesParse.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 16%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o -MF CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o.d -o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/SmilesParseOps.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/SmilesParseOps.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 16%] Linking CXX shared library ../../../lib/libRDKitMolTransforms.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolTransforms.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitMolTransforms.so.1 -o ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1 ../../../lib/libRDKitMolTransforms.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 16%] Built target MolTransforms /usr/bin/gmake -f Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/build.make Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/GenericGroups /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/GenericGroups /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/build.make Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 16%] Building CXX object Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/GenericGroups.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/GenericGroups && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGenericGroups_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GENERICGROUPS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/GenericGroups.cpp.o -MF CMakeFiles/GenericGroups.dir/GenericGroups.cpp.o.d -o CMakeFiles/GenericGroups.dir/GenericGroups.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/GenericGroups/GenericGroups.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/GenericGroups/GenericGroups.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 17%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o -MF CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o.d -o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/SmilesWrite.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/SmilesWrite.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 17%] Linking CXX shared library ../../../lib/libRDKitGenericGroups.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/GenericGroups && /usr/bin/cmake -E cmake_link_script CMakeFiles/GenericGroups.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitGenericGroups.so.1 -o ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 CMakeFiles/GenericGroups.dir/GenericGroups.cpp.o ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.81.0 cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/GenericGroups && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1 ../../../lib/libRDKitGenericGroups.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 17%] Built target GenericGroups /usr/bin/gmake -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 18%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SUBGRAPHS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubgraphs_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o -MF CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o.d -o CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs/Subgraphs.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs/Subgraphs.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 18%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o -MF CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o.d -o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/SmartsWrite.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/SmartsWrite.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 18%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SUBGRAPHS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubgraphs_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o -MF CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o.d -o CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs/SubgraphUtils.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs/SubgraphUtils.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 18%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o -MF CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o.d -o CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/CXSmilesOps.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/CXSmilesOps.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 18%] Linking CXX shared library ../../../lib/libRDKitSubgraphs.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/Subgraphs.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitSubgraphs.so.1 -o ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.81.0 cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1 ../../../lib/libRDKitSubgraphs.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 18%] Built target Subgraphs /usr/bin/gmake -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 19%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DPartialCharges_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_PARTIALCHARGES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o -MF CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o.d -o CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges/GasteigerCharges.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges/GasteigerCharges.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 19%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DPartialCharges_EXPORTS -DRDKIT_DYN_LINK 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-MF CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o.d -o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges/GasteigerParams.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges/GasteigerParams.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 19%] Linking CXX shared library ../../../lib/libRDKitPartialCharges.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_link_script CMakeFiles/PartialCharges.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitPartialCharges.so.1 -o ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.81.0 cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitPartialCharges.so.1 ../../../lib/libRDKitPartialCharges.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 19%] Built target PartialCharges /usr/bin/gmake -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 19%] Building CXX object Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/Trajectory.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Trajectory && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_TRAJECTORY_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DTrajectory_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/Trajectory.cpp.o -MF CMakeFiles/Trajectory.dir/Trajectory.cpp.o.d -o CMakeFiles/Trajectory.dir/Trajectory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Trajectory/Trajectory.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Trajectory/Trajectory.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 19%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o -MF CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o.d -o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/smarts.tab.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/smarts.tab.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 19%] Linking CXX shared library ../../../lib/libRDKitTrajectory.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Trajectory && /usr/bin/cmake -E cmake_link_script CMakeFiles/Trajectory.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitTrajectory.so.1 -o ../../../lib/libRDKitTrajectory.so.1.2023.03.2 CMakeFiles/Trajectory.dir/Trajectory.cpp.o ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.81.0 cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Trajectory && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../lib/libRDKitTrajectory.so.1 ../../../lib/libRDKitTrajectory.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 19%] Built target Trajectory /usr/bin/gmake -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 19%] Building CXX object Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdPartialCharges_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o -MF CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o.d -o CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges/Wrap/rdPartialCharges.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges/Wrap/rdPartialCharges.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 19%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o -MF CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o.d -o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/smiles.tab.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/smiles.tab.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 19%] Linking CXX shared module ../../../../rdkit/Chem/rdPartialCharges.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdPartialCharges.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/rdPartialCharges.so CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o ../../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.81.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 19%] Built target rdPartialCharges /usr/bin/gmake -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 19%] Building CXX object Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolTransforms_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o -MF CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o.d -o CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms/Wrap/rdMolTransforms.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms/Wrap/rdMolTransforms.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 19%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 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-DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o -MF CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o.d -o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/lex.yysmiles.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/lex.yysmiles.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 19%] Linking CXX shared module ../../../../rdkit/Chem/rdMolTransforms.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolTransforms.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/rdMolTransforms.so CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.81.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 19%] Built target rdMolTransforms /usr/bin/gmake -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 20%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SHAPEHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DShapeHelpers_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o -MF CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o.d -o CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/ShapeEncoder.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/ShapeEncoder.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 20%] Linking CXX shared library ../../../lib/libRDKitSmilesParse.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/SmilesParse.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitSmilesParse.so.1 -o ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.81.0 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/smarts.tab.hpp:104:7: warning: type 'union YYSTYPE' violates the C++ One Definition Rule [-Wodr] 104 | union YYSTYPE { | ^ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/smiles.tab.hpp:77:7: note: a different type is defined in another translation unit 77 | union YYSTYPE { | ^ smarts.yy:81:21: note: the first difference of corresponding definitions is field 'atom' 81 | RDKit::QueryAtom * atom; | ^ smiles.yy:84:16: note: a field of same name but different type is defined in another translation unit 84 | RDKit::Atom * atom; | ^ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/QueryAtom.h:28:29: note: type name 'RDKit::QueryAtom' should match type name 'RDKit::Atom' 28 | class RDKIT_GRAPHMOL_EXPORT QueryAtom : public Atom { | ^ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Atom.h:68:29: note: the incompatible type is defined here 68 | class RDKIT_GRAPHMOL_EXPORT Atom : public RDProps { | ^ /scratch/RDKit_git/Code/GraphMol/SmilesParse/smarts.tab.cpp:491:7: warning: type 'union yyalloc' violates the C++ One Definition Rule [-Wodr] /scratch/RDKit_git/Code/GraphMol/SmilesParse/smiles.tab.cpp:488:7: note: a different type is defined in another translation unit /scratch/RDKit_git/Code/GraphMol/SmilesParse/smarts.tab.cpp:492:14: note: the first difference of corresponding definitions is field 'yyss_alloc' /scratch/RDKit_git/Code/GraphMol/SmilesParse/smiles.tab.cpp:489:14: note: a field of same name but different type is defined in another translation unit [ 20%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SHAPEHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DShapeHelpers_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o -MF CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o.d -o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/ShapeUtils.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/ShapeUtils.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 20%] Linking CXX shared library ../../../lib/libRDKitShapeHelpers.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/ShapeHelpers.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitShapeHelpers.so.1 -o ../../../lib/libRDKitShapeHelpers.so.1.2023.03.2 CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitShapeHelpers.so.1.2023.03.2 ../../../lib/libRDKitShapeHelpers.so.1 ../../../lib/libRDKitShapeHelpers.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 20%] Built target ShapeHelpers /usr/bin/gmake -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 20%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o -MF CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o.d -o CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog/MolCatalogEntry.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog/MolCatalogEntry.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 20%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o -MF CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o.d -o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog/MolCatalogParams.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog/MolCatalogParams.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 20%] Linking CXX shared library ../../../lib/libRDKitMolCatalog.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolCatalog.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitMolCatalog.so.1 -o ../../../lib/libRDKitMolCatalog.so.1.2023.03.2 CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolCatalog.so.1.2023.03.2 ../../../lib/libRDKitMolCatalog.so.1 ../../../lib/libRDKitMolCatalog.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 20%] Built target MolCatalog /usr/bin/gmake -f Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/build.make Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/build.make Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 20%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/CIPMol.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/CIPMol.cpp.o -MF CMakeFiles/CIPLabeler.dir/CIPMol.cpp.o.d -o CMakeFiles/CIPLabeler.dir/CIPMol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/CIPMol.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/CIPMol.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1 ../../../lib/libRDKitSmilesParse.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 20%] Built target SmilesParse /usr/bin/gmake -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 20%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNParse.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNParse.cpp.o -MF CMakeFiles/SLNParse.dir/SLNParse.cpp.o.d -o CMakeFiles/SLNParse.dir/SLNParse.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse/SLNParse.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse/SLNParse.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 20%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/CIPLabeler.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security 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-DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Mancude.cpp.o -MF CMakeFiles/CIPLabeler.dir/Mancude.cpp.o.d -o CMakeFiles/CIPLabeler.dir/Mancude.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/Mancude.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/Mancude.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 20%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o -MF CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o.d -o CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse/SLNAttribs.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse/SLNAttribs.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 21%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Digraph.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Digraph.cpp.o -MF CMakeFiles/CIPLabeler.dir/Digraph.cpp.o.d -o CMakeFiles/CIPLabeler.dir/Digraph.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/Digraph.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/Digraph.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 21%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Node.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Node.cpp.o -MF CMakeFiles/CIPLabeler.dir/Node.cpp.o.d -o CMakeFiles/CIPLabeler.dir/Node.cpp.o -c 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Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Edge.cpp.o -MF CMakeFiles/CIPLabeler.dir/Edge.cpp.o.d -o CMakeFiles/CIPLabeler.dir/Edge.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/Edge.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/Edge.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 21%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Sort.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Sort.cpp.o -MF CMakeFiles/CIPLabeler.dir/Sort.cpp.o.d -o CMakeFiles/CIPLabeler.dir/Sort.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/Sort.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/Sort.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 21%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/configs/Configuration.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/configs/Sp2Bond.cpp.o -MF CMakeFiles/CIPLabeler.dir/configs/Sp2Bond.cpp.o.d -o CMakeFiles/CIPLabeler.dir/configs/Sp2Bond.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/configs/Sp2Bond.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/configs/Sp2Bond.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 21%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/configs/Tetrahedral.cpp.o cd 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-Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/configs/Tetrahedral.cpp.o -MF CMakeFiles/CIPLabeler.dir/configs/Tetrahedral.cpp.o.d -o CMakeFiles/CIPLabeler.dir/configs/Tetrahedral.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/configs/Tetrahedral.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/configs/Tetrahedral.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 21%] Linking CXX shared library ../../../lib/libRDKitSLNParse.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/SLNParse.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitSLNParse.so.1 -o ../../../lib/libRDKitSLNParse.so.1.2023.03.2 CMakeFiles/SLNParse.dir/SLNParse.cpp.o CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o CMakeFiles/SLNParse.dir/sln.tab.cpp.o CMakeFiles/SLNParse.dir/lex.yysln.cpp.o ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.81.0 [ 21%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule1a.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule1a.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule1a.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule1a.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule1a.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule1a.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 22%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule1b.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule1b.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule1b.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule1b.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule1b.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule1b.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 22%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule2.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule2.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule2.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule2.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule2.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule2.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSLNParse.so.1.2023.03.2 ../../../lib/libRDKitSLNParse.so.1 ../../../lib/libRDKitSLNParse.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 22%] Built target SLNParse /usr/bin/gmake -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 22%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/rdqueries.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdqueries_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/rdqueries.cpp.o -MF CMakeFiles/rdqueries.dir/rdqueries.cpp.o.d -o CMakeFiles/rdqueries.dir/rdqueries.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/rdqueries.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/rdqueries.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 22%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule3.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB 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Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule3.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule3.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule3.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule3.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule3.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 22%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule4a.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule4a.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule4a.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule4a.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule4a.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule4a.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 22%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule4b.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule4b.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule4b.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule4b.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule4b.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule4b.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 22%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/Queries.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdqueries_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/Queries.cpp.o -MF CMakeFiles/rdqueries.dir/Queries.cpp.o.d -o CMakeFiles/rdqueries.dir/Queries.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/Queries.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/Queries.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 22%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule4c.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule4c.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule4c.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule4c.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule4c.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule4c.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 22%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule5.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && 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-I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule5New.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule5New.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule5New.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule5New.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule5New.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 22%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule6.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule6.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule6.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule6.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule6.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule6.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 23%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/SequenceRule.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD 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-mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitCIPLabeler.so.1 -o ../../../lib/libRDKitCIPLabeler.so.1.2023.03.2 CMakeFiles/CIPLabeler.dir/CIPMol.cpp.o CMakeFiles/CIPLabeler.dir/CIPLabeler.cpp.o CMakeFiles/CIPLabeler.dir/Mancude.cpp.o CMakeFiles/CIPLabeler.dir/Digraph.cpp.o CMakeFiles/CIPLabeler.dir/Node.cpp.o CMakeFiles/CIPLabeler.dir/Edge.cpp.o CMakeFiles/CIPLabeler.dir/Sort.cpp.o CMakeFiles/CIPLabeler.dir/configs/Configuration.cpp.o CMakeFiles/CIPLabeler.dir/configs/Sp2Bond.cpp.o CMakeFiles/CIPLabeler.dir/configs/Tetrahedral.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule1a.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule1b.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule2.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule3.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule4a.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule4b.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule4c.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule5.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule5New.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule6.cpp.o CMakeFiles/CIPLabeler.dir/rules/SequenceRule.cpp.o ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.81.0 [ 23%] Linking CXX shared module ../../../rdkit/Chem/rdqueries.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdqueries.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../rdkit/Chem/rdqueries.so CMakeFiles/rdqueries.dir/rdqueries.cpp.o CMakeFiles/rdqueries.dir/Queries.cpp.o ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.81.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitCIPLabeler.so.1.2023.03.2 ../../../lib/libRDKitCIPLabeler.so.1 ../../../lib/libRDKitCIPLabeler.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 23%] Built target CIPLabeler /usr/bin/gmake -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 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-I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o -MF CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o.d -o CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/Trajectory.cpp annobin: 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-DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemicalFeatures_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o -MF CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o.d -o CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ChemicalFeatures/Wrap/FreeChemicalFeature.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ChemicalFeatures/Wrap/FreeChemicalFeature.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 23%] Linking CXX shared module ../../../rdkit/Chem/rdtrajectory.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdtrajectory.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../rdkit/Chem/rdtrajectory.so CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o ../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.81.0 gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 23%] Built target rdtrajectory /usr/bin/gmake -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 23%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Substruct && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTMATCH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructMatch_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o -MF CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o.d -o CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Substruct/SubstructMatch.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Substruct/SubstructMatch.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 23%] Linking CXX shared module ../../../rdkit/Chem/rdChemicalFeatures.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ChemicalFeatures/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdChemicalFeatures.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 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../../../lib/libRDKitChemicalFeatures.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.81.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 23%] Built target rdChemicalFeatures /usr/bin/gmake -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2023_03_2 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-I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o -MF CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o.d -o CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Optimizer/BFGSOpt.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Optimizer/BFGSOpt.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 23%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/LinearSearch.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Optimizer && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DOptimizer_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_OPTIMIZER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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-fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitOptimizer.so.1 -o ../../../lib/libRDKitOptimizer.so.1.2023.03.2 CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o ../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.81.0 cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../../lib/libRDKitOptimizer.so.1 ../../../lib/libRDKitOptimizer.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 23%] Built target Optimizer /usr/bin/gmake -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/graphmolcpTest.dir/cptest.cpp.o -MF CMakeFiles/graphmolcpTest.dir/cptest.cpp.o.d -o CMakeFiles/graphmolcpTest.dir/cptest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/cptest.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/cptest.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 23%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Substruct && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTMATCH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructMatch_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o -MF CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o.d -o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Substruct/SubstructUtils.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Substruct/SubstructUtils.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 23%] Linking CXX executable graphmolcpTest cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolcpTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/graphmolcpTest.dir/cptest.cpp.o -o graphmolcpTest ../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 23%] Built target graphmolcpTest /usr/bin/gmake -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CMakeFiles/graphmolIterTest.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 23%] Building CXX object Code/GraphMol/CMakeFiles/graphmolIterTest.dir/itertest.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/graphmolIterTest.dir/itertest.cpp.o -MF CMakeFiles/graphmolIterTest.dir/itertest.cpp.o.d -o CMakeFiles/graphmolIterTest.dir/itertest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/itertest.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/itertest.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 23%] Linking CXX shared library ../../../lib/libRDKitSubstructMatch.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/SubstructMatch.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection 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CMakeFiles/graphmolIterTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/graphmolIterTest.dir/itertest.cpp.o -o graphmolIterTest ../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 23%] Built target graphmolIterTest /usr/bin/gmake -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 23%] Building CXX object Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o -MF CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o.d -o CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/memtest1.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/memtest1.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1 ../../../lib/libRDKitSubstructMatch.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 23%] Built target SubstructMatch /usr/bin/gmake -f Code/GraphMol/CMakeFiles/test-valgrind.dir/build.make Code/GraphMol/CMakeFiles/test-valgrind.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CMakeFiles/test-valgrind.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/CMakeFiles/test-valgrind.dir/build.make Code/GraphMol/CMakeFiles/test-valgrind.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 23%] Building CXX object Code/GraphMol/CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o -MF CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o.d -o CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/test-valgrind.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/test-valgrind.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 23%] Linking CXX executable graphmolMemTest1 cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolMemTest1.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o -o graphmolMemTest1 ../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 23%] Built target graphmolMemTest1 /usr/bin/gmake -f Code/GraphMol/CMakeFiles/moliteratorTestsCatch.dir/build.make 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/builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/moliteratorTestsCatch.dir/catch_moliterators.cpp.o -MF CMakeFiles/moliteratorTestsCatch.dir/catch_moliterators.cpp.o.d -o CMakeFiles/moliteratorTestsCatch.dir/catch_moliterators.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/catch_moliterators.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/catch_moliterators.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 23%] Linking CXX executable test-valgrind cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-valgrind.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o" -o test-valgrind ../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 23%] Linking CXX executable moliteratorTestsCatch cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/moliteratorTestsCatch.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/moliteratorTestsCatch.dir/catch_moliterators.cpp.o -o moliteratorTestsCatch ../RDGeneral/librdkitCatch.so ../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 23%] Built target test-valgrind /usr/bin/gmake -f Code/GraphMol/CMakeFiles/queryTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/queryTestsCatch.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CMakeFiles/queryTestsCatch.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory 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Linking CXX executable smaTest1 cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/smaTest1.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/smaTest1.dir/smatest.cpp.o -o smaTest1 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 25%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o -MF CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o.d -o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/AtomPairs.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/AtomPairs.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 25%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MACCS.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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'/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 25%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/Filters.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer 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CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog/FilterCatalog.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog/FilterCatalog.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 26%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MHFP.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code 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defined [ 26%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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-DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o -MF 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalogRunner.cpp.o -MF CMakeFiles/FilterCatalog.dir/FilterCatalogRunner.cpp.o.d -o CMakeFiles/FilterCatalog.dir/FilterCatalogRunner.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog/FilterCatalogRunner.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog/FilterCatalogRunner.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 26%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o -MF CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o.d -o CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 26%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o -MF CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o.d -o CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog/FilterMatchers.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog/FilterMatchers.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 26%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o -MF CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o.d -o CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/FingerprintUtil.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/FingerprintUtil.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 26%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o -MF CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o.d -o CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog/FunctionalGroupHierarchy.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog/FunctionalGroupHierarchy.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 27%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o -MF CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o.d -o CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 27%] Linking CXX shared library ../../../lib/libRDKitFilterCatalog.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/FilterCatalog.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitFilterCatalog.so.1 -o ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 CMakeFiles/FilterCatalog.dir/Filters.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalogRunner.cpp.o CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 27%] Linking CXX shared library ../../../lib/libRDKitFingerprints.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/Fingerprints.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitFingerprints.so.1 -o ../../../lib/libRDKitFingerprints.so.1.2023.03.2 CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o CMakeFiles/Fingerprints.dir/MACCS.cpp.o CMakeFiles/Fingerprints.dir/MHFP.cpp.o CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1 ../../../lib/libRDKitFilterCatalog.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 27%] Built target FilterCatalog /usr/bin/gmake -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 27%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/test1.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/test1.cpp.o -MF CMakeFiles/testSubgraphs1.dir/test1.cpp.o.d -o CMakeFiles/testSubgraphs1.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs/test1.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs/test1.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1 ../../../lib/libRDKitFingerprints.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 27%] Built target Fingerprints /usr/bin/gmake -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 27%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/test2.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/test2.cpp.o -MF CMakeFiles/testSubgraphs2.dir/test2.cpp.o.d -o CMakeFiles/testSubgraphs2.dir/test2.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs/test2.cpp annobin: 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-I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o -MF CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o.d -o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog/FragCatalogEntry.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog/FragCatalogEntry.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 29%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o -MF CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o.d -o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog/FragCatParams.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog/FragCatParams.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 29%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o -MF CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o.d -o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog/FragFPGenerator.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog/FragFPGenerator.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 29%] Linking CXX shared library ../../../lib/libRDKitFragCatalog.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/FragCatalog.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitFragCatalog.so.1 -o ../../../lib/libRDKitFragCatalog.so.1.2023.03.2 CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 29%] Linking CXX shared module ../../../../rdkit/Chem/rdfiltercatalog.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdfiltercatalog.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/rdfiltercatalog.so CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o ../../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../../lib/libRDKitCatalogs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.81.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFragCatalog.so.1.2023.03.2 ../../../lib/libRDKitFragCatalog.so.1 ../../../lib/libRDKitFragCatalog.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 29%] Built target FragCatalog /usr/bin/gmake -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 30%] Building CXX object Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdFingerprintGenerator_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o -MF CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o.d -o CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp: In function 'boost::python::api::object RDKit::FingerprintWrapper::getBitPathsHelper(const RDKit::AdditionalOutput&)': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp:381:19: warning: redundant move in return statement [-Wredundant-move] 381 | return std::move(res); | ~~~~~~~~~^~~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp:381:19: note: remove 'std::move' call /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp: In function 'boost::python::api::object RDKit::FingerprintWrapper::getBitInfoMapHelper(const RDKit::AdditionalOutput&)': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp:396:19: warning: redundant move in return statement [-Wredundant-move] 396 | return std::move(res); | ~~~~~~~~~^~~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp:396:19: note: remove 'std::move' call gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 30%] Built target rdfiltercatalog /usr/bin/gmake -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 30%] Building CXX object Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/MHFPWrapper.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMHFPFingerprint_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/MHFPWrapper.cpp.o -MF CMakeFiles/rdMHFPFingerprint.dir/MHFPWrapper.cpp.o.d -o CMakeFiles/rdMHFPFingerprint.dir/MHFPWrapper.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap/MHFPWrapper.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap/MHFPWrapper.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 30%] Linking CXX shared module ../../../../rdkit/Chem/rdFingerprintGenerator.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdFingerprintGenerator.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/rdFingerprintGenerator.so CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o ../../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.81.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 30%] Built target rdFingerprintGenerator /usr/bin/gmake -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 30%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/test1.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/test1.cpp.o -MF CMakeFiles/testPartialCharges.dir/test1.cpp.o.d -o CMakeFiles/testPartialCharges.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges/test1.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges/test1.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 30%] Linking CXX executable testPartialCharges cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_link_script CMakeFiles/testPartialCharges.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testPartialCharges.dir/test1.cpp.o -o testPartialCharges ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 30%] Built target testPartialCharges /usr/bin/gmake -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 30%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o -MF CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o.d -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 30%] Linking CXX shared module ../../../../rdkit/Chem/rdMHFPFingerprint.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMHFPFingerprint.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/rdMHFPFingerprint.so CMakeFiles/rdMHFPFingerprint.dir/MHFPWrapper.cpp.o ../../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.81.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl In member function 'construct', inlined from 'construct' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from '_M_create_node' at /usr/include/c++/13/bits/stl_list.h:713:33, inlined from '_M_insert' at /usr/include/c++/13/bits/stl_list.h:2005:32, inlined from 'push_back' at /usr/include/c++/13/bits/stl_list.h:1306:24, inlined from 'push_dispatch' at /usr/include/boost/pending/container_traits.hpp:574:20, inlined from 'push' at /usr/include/boost/pending/container_traits.hpp:606:29, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:1073:29, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:2263:20, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:2271:20, inlined from 'copy_impl' at /usr/include/boost/graph/detail/adjacency_list.hpp:2198:27, inlined from '__ct ' at /usr/include/boost/graph/detail/adjacency_list.hpp:2123:69, inlined from '__ct ' at /usr/include/boost/graph/adjacency_list.hpp:321:65, inlined from '__ct_base ' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ROMol.h:348:9: /usr/include/c++/13/bits/new_allocator.h:187:11: warning: 'p' may be used uninitialized [-Wmaybe-uninitialized] 187 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^ /usr/include/boost/graph/detail/adjacency_list.hpp: In member function '__ct_base ': /usr/include/boost/graph/detail/adjacency_list.hpp:2270:41: note: 'p' was declared here 2270 | typename Config::edge_property_type p; | ^ [ 30%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o -MF CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o.d -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 30%] Built target rdMHFPFingerprint /usr/bin/gmake -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 30%] Building CXX object Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdShapeHelpers_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o -MF CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o.d -o CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 31%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -MF CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o.d -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 31%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o -MF CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o.d -o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/FeatureParser.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/FeatureParser.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 31%] Linking CXX shared module ../../../../rdkit/Chem/rdShapeHelpers.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdShapeHelpers.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/rdShapeHelpers.so CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o ../../../../lib/libRDKitShapeHelpers.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.81.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl In member function '__ct ', inlined from 'getUnionOfTwoBox' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:98:67: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/point.h:66:31: warning: 'MEM [(double *)&D.12526 + 32B]' may be used uninitialized [-Wmaybe-uninitialized] 66 | : Point(other), x(other.x), y(other.y), z(other.z) {} | ^ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp: In function 'getUnionOfTwoBox': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:98:67: note: '' declared here 98 | python::extract(box2.attr("__getitem__")(1)); | ^ In member function '__ct ', inlined from 'getUnionOfTwoBox' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:98:67: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/point.h:66:55: warning: 'MEM[(const struct Point3D &)&D.12526 + 24].z' may be used uninitialized [-Wmaybe-uninitialized] 66 | : Point(other), x(other.x), y(other.y), z(other.z) {} | ^ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp: In function 'getUnionOfTwoBox': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:98:67: note: '' declared here 98 | python::extract(box2.attr("__getitem__")(1)); | ^ In member function '__ct ', inlined from 'getUnionOfTwoBox' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:96:67: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/point.h:66:31: warning: 'MEM [(double *)&D.12522 + 32B]' may be used uninitialized [-Wmaybe-uninitialized] 66 | : Point(other), x(other.x), y(other.y), z(other.z) {} | ^ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp: In function 'getUnionOfTwoBox': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:96:67: note: '' declared here 96 | python::extract(box2.attr("__getitem__")(0)); | ^ In member function '__ct ', inlined from 'getUnionOfTwoBox' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:96:67: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/point.h:66:55: warning: 'MEM[(const struct Point3D &)&D.12522 + 24].z' may be used uninitialized [-Wmaybe-uninitialized] 66 | : Point(other), x(other.x), y(other.y), z(other.z) {} | ^ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp: In function 'getUnionOfTwoBox': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:96:67: note: '' declared here 96 | python::extract(box2.attr("__getitem__")(0)); | ^ In member function '__ct ', inlined from 'getUnionOfTwoBox' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:93:67: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/point.h:66:31: warning: 'MEM [(double *)&D.12518 + 32B]' may be used uninitialized [-Wmaybe-uninitialized] 66 | : Point(other), x(other.x), y(other.y), z(other.z) {} | ^ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp: In function 'getUnionOfTwoBox': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:93:67: note: '' declared here 93 | python::extract(box1.attr("__getitem__")(1)); | ^ In member function '__ct ', inlined from 'getUnionOfTwoBox' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:93:67: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/point.h:66:55: warning: 'MEM[(const struct Point3D &)&D.12518 + 24].z' may be used uninitialized [-Wmaybe-uninitialized] 66 | : Point(other), x(other.x), y(other.y), z(other.z) {} | ^ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp: In function 'getUnionOfTwoBox': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:93:67: note: '' declared here 93 | python::extract(box1.attr("__getitem__")(1)); | ^ In member function '__ct ', inlined from 'getUnionOfTwoBox' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:91:67: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/point.h:66:31: warning: 'MEM [(double *)&D.12514 + 32B]' may be used uninitialized [-Wmaybe-uninitialized] 66 | : Point(other), x(other.x), y(other.y), z(other.z) {} | ^ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp: In function 'getUnionOfTwoBox': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:91:67: note: '' declared here 91 | python::extract(box1.attr("__getitem__")(0)); | ^ In member function '__ct ', inlined from 'getUnionOfTwoBox' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:91:67: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/point.h:66:55: warning: 'MEM[(const struct Point3D &)&D.12514 + 24].z' may be used uninitialized [-Wmaybe-uninitialized] 66 | : Point(other), x(other.x), y(other.y), z(other.z) {} | ^ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp: In function 'getUnionOfTwoBox': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:91:67: note: '' declared here 91 | python::extract(box1.attr("__getitem__")(0)); | ^ gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 31%] Built target rdShapeHelpers /usr/bin/gmake -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 31%] Building CXX object Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolCatalog_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o -MF CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o.d -o CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog/Wrap/rdMolCatalog.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog/Wrap/rdMolCatalog.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 31%] Linking CXX shared library ../../../lib/libRDKitMolChemicalFeatures.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolChemicalFeatures.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitMolChemicalFeatures.so.1 -o ../../../lib/libRDKitMolChemicalFeatures.so.1.2023.03.2 CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolChemicalFeatures.so.1.2023.03.2 ../../../lib/libRDKitMolChemicalFeatures.so.1 ../../../lib/libRDKitMolChemicalFeatures.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 31%] Built target MolChemicalFeatures /usr/bin/gmake -f Code/GraphMol/CIPLabeler/Wrap/CMakeFiles/rdCIPLabeler.dir/build.make Code/GraphMol/CIPLabeler/Wrap/CMakeFiles/rdCIPLabeler.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/Wrap 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-I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/CIPLabeler/Wrap/CMakeFiles/rdCIPLabeler.dir/rdCIPLabeler.cpp.o -MF CMakeFiles/rdCIPLabeler.dir/rdCIPLabeler.cpp.o.d -o CMakeFiles/rdCIPLabeler.dir/rdCIPLabeler.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/Wrap/rdCIPLabeler.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/Wrap/rdCIPLabeler.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 32%] Linking CXX shared module ../../../../rdkit/Chem/rdMolCatalog.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolCatalog.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed 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CMakeFiles/rdCIPLabeler.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/rdCIPLabeler.so CMakeFiles/rdCIPLabeler.dir/rdCIPLabeler.cpp.o ../../../../lib/libRDKitCIPLabeler.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.81.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 32%] Built target rdCIPLabeler /usr/bin/gmake -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ReducedGraphs 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../../../lib/libRDKitReducedGraphs.so.1.2023.03.2 CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitReducedGraphs.so.1.2023.03.2 ../../../lib/libRDKitReducedGraphs.so.1 ../../../lib/libRDKitReducedGraphs.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 34%] Built target ReducedGraphs /usr/bin/gmake -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/depend gmake[2]: 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CMakeFiles/Abbreviations.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitAbbreviations.so.1 -o ../../../lib/libRDKitAbbreviations.so.1.2023.03.2 CMakeFiles/Abbreviations.dir/Abbreviations.cpp.o CMakeFiles/Abbreviations.dir/AbbreviationsUtils.cpp.o ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Abbreviations && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitAbbreviations.so.1.2023.03.2 ../../../lib/libRDKitAbbreviations.so.1 ../../../lib/libRDKitAbbreviations.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 35%] Built target Abbreviations /usr/bin/gmake -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd 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-I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/ForceField.cpp.o -MF CMakeFiles/ForceField.dir/ForceField.cpp.o.d -o CMakeFiles/ForceField.dir/ForceField.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/ForceField.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/ForceField.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined In file included from 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/builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/ForceField.cpp:281:10: note: 'finalForce' was declared here 281 | double finalForce; | ^~~~~~~~~~ [ 35%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o -MF CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o.d -o CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/UFF/AngleBend.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/UFF/AngleBend.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 35%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB 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Code/ForceField/CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o -MF CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o.d -o CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/UFF/BondStretch.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/UFF/BondStretch.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 35%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o -MF CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o.d -o CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/UFF/Nonbonded.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/UFF/Nonbonded.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 35%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DepictUtils.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Depictor && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDepictor_EXPORTS -DRDKIT_DEPICTOR_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DepictUtils.cpp.o -MF CMakeFiles/Depictor.dir/DepictUtils.cpp.o.d -o CMakeFiles/Depictor.dir/DepictUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Depictor/DepictUtils.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Depictor/DepictUtils.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 35%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED 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/builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/UFF/Inversion.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/UFF/Inversion.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 35%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o -MF CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o.d -o CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/UFF/TorsionAngle.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/UFF/TorsionAngle.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 35%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField && /usr/bin/g++ 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-fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o -MF CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o.d -o CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/UFF/DistanceConstraint.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/UFF/DistanceConstraint.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 35%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/Templates.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Depictor && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDepictor_EXPORTS -DRDKIT_DEPICTOR_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/Templates.cpp.o -MF CMakeFiles/Depictor.dir/Templates.cpp.o.d -o CMakeFiles/Depictor.dir/Templates.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Depictor/Templates.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Depictor/Templates.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 36%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o -MF CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o.d -o CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/UFF/AngleConstraint.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/UFF/AngleConstraint.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 36%] Linking CXX shared library ../../../lib/libRDKitDepictor.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_link_script CMakeFiles/Depictor.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security 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../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 36%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o -MF CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o.d -o CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/UFF/TorsionConstraint.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/UFF/TorsionConstraint.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 36%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o -MF CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o.d -o CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/UFF/PositionConstraint.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/UFF/PositionConstraint.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 36%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Params.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/UFF/Params.cpp.o -MF CMakeFiles/ForceField.dir/UFF/Params.cpp.o.d -o CMakeFiles/ForceField.dir/UFF/Params.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/UFF/Params.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/UFF/Params.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1 ../../../lib/libRDKitDepictor.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 36%] Built target Depictor /usr/bin/gmake -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign 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-I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o -MF CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o.d -o CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign/AlignMolecules.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign/AlignMolecules.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 36%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o -MF CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o.d -o CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/MMFF/AngleBend.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/MMFF/AngleBend.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 36%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o -MF CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o.d -o CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/MMFF/BondStretch.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/MMFF/BondStretch.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 36%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o -MF CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o.d -o CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/MMFF/StretchBend.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/MMFF/StretchBend.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 36%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o -MF CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o.d -o CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/MMFF/OopBend.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/MMFF/OopBend.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 36%] Linking CXX shared library ../../../lib/libRDKitMolAlign.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolAlign.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitMolAlign.so.1 -o ../../../lib/libRDKitMolAlign.so.1.2023.03.2 CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../lib/libRDKitMolAlign.so.1 ../../../lib/libRDKitMolAlign.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 36%] Built target MolAlign /usr/bin/gmake -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 37%] Building CXX object Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o -MF CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o.d -o CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/querytest.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/querytest.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 38%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o -MF CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o.d -o CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/MMFF/TorsionAngle.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/MMFF/TorsionAngle.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 38%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o -MF CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o.d -o CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/MMFF/Nonbonded.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/MMFF/Nonbonded.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 38%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o -MF CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o.d -o CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/MMFF/DistanceConstraint.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/MMFF/DistanceConstraint.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 38%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o -MF CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o.d -o CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/MMFF/AngleConstraint.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/MMFF/AngleConstraint.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 38%] Linking CXX executable graphmolqueryTest cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolqueryTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o -o graphmolqueryTest ../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 38%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o -MF CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o.d -o CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/MMFF/TorsionConstraint.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/MMFF/TorsionConstraint.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 38%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o -MF CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o.d -o CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/MMFF/PositionConstraint.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/MMFF/PositionConstraint.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 38%] Built target graphmolqueryTest /usr/bin/gmake -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Depictor/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Depictor/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 38%] Building CXX object Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Depictor/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdDepictor_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o -MF CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o.d -o CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 38%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Params.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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void setPreferCoordGen(bool value) { | ~~~~~^~~~~ [ 38%] Linking CXX shared library ../../lib/libRDKitForceField.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField && /usr/bin/cmake -E cmake_link_script CMakeFiles/ForceField.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitForceField.so.1 -o ../../lib/libRDKitForceField.so.1.2023.03.2 CMakeFiles/ForceField.dir/ForceField.cpp.o CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/Params.cpp.o CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/Params.cpp.o ../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl In function 'minimize', inlined from 'minimize' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/ForceField.cpp:289:24: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Optimizer/BFGSOpt.h:273:36: warning: 'finalForce' may be used uninitialized [-Wmaybe-uninitialized] 273 | double term = std::max(funcVal * gradScale, 1.0); | ^ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/ForceField.cpp: In member function 'minimize': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/ForceField.cpp:281:10: note: 'finalForce' was declared here 281 | double finalForce; | ^ [ 39%] Linking CXX shared module ../../../../rdkit/Chem/rdDepictor.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Depictor/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdDepictor.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/rdDepictor.so CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.81.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 39%] Built target rdDepictor /usr/bin/gmake -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 39%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o -MF CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o.d -o CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/Wrap/rdMolChemicalFeatures.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/Wrap/rdMolChemicalFeatures.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitForceField.so.1.2023.03.2 ../../lib/libRDKitForceField.so.1 ../../lib/libRDKitForceField.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 39%] Built target ForceField [ 40%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION 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RDKit::GetAtomMatch(boost::python::api::object, int)': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/Wrap/ChemicalFeatureUtils.cpp:45:19: warning: redundant move in return statement [-Wredundant-move] 45 | return std::move(res); | ~~~~~~~~~^~~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/Wrap/ChemicalFeatureUtils.cpp:45:19: note: remove 'std::move' call [ 40%] Linking CXX shared module ../../../../rdkit/Chem/rdMolChemicalFeatures.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolChemicalFeatures.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic 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/builddir/build/BUILD/rdkit-Release_2023_03_2/External/INCHI-API/inchi.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/External/INCHI-API/inchi.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 41%] Linking CXX shared module ../../../../rdkit/Chem/rdAbbreviations.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Abbreviations/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdAbbreviations.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro 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41%] Linking CXX shared library ../../lib/libRDKitRDInchiLib.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/External/INCHI-API && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDInchiLib.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitRDInchiLib.so.1 -o ../../lib/libRDKitRDInchiLib.so.1.2023.03.2 CMakeFiles/RDInchiLib.dir/inchi.cpp.o /usr/lib64/libinchi.so ../../lib/libRDKitDepictor.so.1.2023.03.2 ../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 41%] Built target rdAbbreviations /usr/bin/gmake -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && 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Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o -MF CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o.d -o CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemTransforms/ChemTransforms.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemTransforms/ChemTransforms.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined cd /builddir/build/BUILD/rdkit-Release_2023_03_2/External/INCHI-API && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDInchiLib.so.1.2023.03.2 ../../lib/libRDKitRDInchiLib.so.1 ../../lib/libRDKitRDInchiLib.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 41%] Built target RDInchiLib /usr/bin/gmake -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/depend gmake[2]: Entering directory 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Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic 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Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o -MF CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o.d -o CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/MMFF/Builder.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/MMFF/Builder.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 43%] Linking CXX shared library ../../../lib/libRDKitChemTransforms.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemTransforms.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic 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/usr/lib64/libboost_serialization.so.1.81.0 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 43%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o -MF CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o.d -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 43%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o -MF CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o.d -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1 ../../../lib/libRDKitChemTransforms.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 43%] Built target ChemTransforms /usr/bin/gmake -f External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build.make External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/External/INCHI-API/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/External/INCHI-API/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build.make 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/pyInchi.cpp.o -MF CMakeFiles/rdinchi.dir/pyInchi.cpp.o.d -o CMakeFiles/rdinchi.dir/pyInchi.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/External/INCHI-API/Wrap/pyInchi.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/External/INCHI-API/Wrap/pyInchi.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 44%] Linking CXX shared library ../../../lib/libRDKitForceFieldHelpers.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/ForceFieldHelpers.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitForceFieldHelpers.so.1 -o ../../../lib/libRDKitForceFieldHelpers.so.1.2023.03.2 CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitForceField.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 44%] Linking CXX shared module ../../../rdkit/Chem/rdinchi.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/External/INCHI-API/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdinchi.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g 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../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.81.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 44%] Built target rdinchi /usr/bin/gmake -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 44%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/rdchem.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/rdchem.cpp.o -MF CMakeFiles/rdchem.dir/rdchem.cpp.o.d -o CMakeFiles/rdchem.dir/rdchem.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/rdchem.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/rdchem.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitForceFieldHelpers.so.1.2023.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1 ../../../lib/libRDKitForceFieldHelpers.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 44%] Built target ForceFieldHelpers [ 44%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Table.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap && /usr/bin/g++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED 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Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/CDXMLParser.cpp.o -MF CMakeFiles/FileParsers.dir/CDXMLParser.cpp.o.d -o CMakeFiles/FileParsers.dir/CDXMLParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/CDXMLParser.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/CDXMLParser.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 46%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Chirality.cpp.o -MF CMakeFiles/rdchem.dir/Chirality.cpp.o.d -o CMakeFiles/rdchem.dir/Chirality.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/Chirality.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/Chirality.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 46%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileParser.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileParser.cpp.o -MF CMakeFiles/FileParsers.dir/MolFileParser.cpp.o.d -o CMakeFiles/FileParsers.dir/MolFileParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/MolFileParser.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/MolFileParser.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 46%] Linking CXX shared module ../../../rdkit/Chem/rdchem.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdchem.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../rdkit/Chem/rdchem.so CMakeFiles/rdchem.dir/rdchem.cpp.o CMakeFiles/rdchem.dir/Table.cpp.o CMakeFiles/rdchem.dir/Atom.cpp.o CMakeFiles/rdchem.dir/Bond.cpp.o CMakeFiles/rdchem.dir/Mol.cpp.o CMakeFiles/rdchem.dir/Conformer.cpp.o CMakeFiles/rdchem.dir/RingInfo.cpp.o CMakeFiles/rdchem.dir/EditableMol.cpp.o CMakeFiles/rdchem.dir/MonomerInfo.cpp.o CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o CMakeFiles/rdchem.dir/MolBundle.cpp.o CMakeFiles/rdchem.dir/StereoGroup.cpp.o CMakeFiles/rdchem.dir/SubstanceGroup.cpp.o CMakeFiles/rdchem.dir/Chirality.cpp.o ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.81.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl In member function '__ct ', inlined from 'dereference' at /usr/include/boost/python/stl_iterator.hpp:48:61, inlined from 'dereference' at /usr/include/boost/iterator/iterator_facade.hpp:631:32, inlined from 'operator*' at /usr/include/boost/iterator/iterator_facade.hpp:737:69, inlined from 'addBracketHelper' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/SubstanceGroup.cpp:73:14: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/point.h:66:31: warning: 'MEM[(const struct Point3D &)&D.20593 + 24].x' may be used uninitialized [-Wmaybe-uninitialized] 66 | : Point(other), x(other.x), y(other.y), z(other.z) {} | ^ /usr/include/boost/python/stl_iterator.hpp: In function 'addBracketHelper': /usr/include/boost/python/stl_iterator.hpp:48:16: note: '' declared here 48 | return extract(this->impl_.current().get())(); | ^ In member function '__ct ', inlined from 'dereference' at /usr/include/boost/python/stl_iterator.hpp:48:61, inlined from 'dereference' at /usr/include/boost/iterator/iterator_facade.hpp:631:32, inlined from 'operator*' at /usr/include/boost/iterator/iterator_facade.hpp:737:69, inlined from 'addBracketHelper' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/SubstanceGroup.cpp:73:14: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/point.h:66:43: warning: 'MEM[(const struct Point3D &)&D.20593 + 24].y' may be used uninitialized [-Wmaybe-uninitialized] 66 | : Point(other), x(other.x), y(other.y), z(other.z) {} | ^ /usr/include/boost/python/stl_iterator.hpp: In function 'addBracketHelper': /usr/include/boost/python/stl_iterator.hpp:48:16: note: '' declared here 48 | return extract(this->impl_.current().get())(); | ^ In member function '__ct ', inlined from 'dereference' at /usr/include/boost/python/stl_iterator.hpp:48:61, inlined from 'dereference' at /usr/include/boost/iterator/iterator_facade.hpp:631:32, inlined from 'operator*' at /usr/include/boost/iterator/iterator_facade.hpp:737:69, inlined from 'addBracketHelper' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/SubstanceGroup.cpp:73:14: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/point.h:66:55: warning: 'MEM[(const struct Point3D &)&D.20593 + 24].z' may be used uninitialized [-Wmaybe-uninitialized] 66 | : Point(other), x(other.x), y(other.y), z(other.z) {} | ^ /usr/include/boost/python/stl_iterator.hpp: In function 'addBracketHelper': /usr/include/boost/python/stl_iterator.hpp:48:16: note: '' declared here 48 | return extract(this->impl_.current().get())(); | ^ [ 46%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolSGroupParsing.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD 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CMakeFiles/FileParsers.dir/MolSGroupParsing.cpp.o.d -o CMakeFiles/FileParsers.dir/MolSGroupParsing.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/MolSGroupParsing.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/MolSGroupParsing.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 46%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolSGroupWriting.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolSGroupWriting.cpp.o -MF CMakeFiles/FileParsers.dir/MolSGroupWriting.cpp.o.d -o CMakeFiles/FileParsers.dir/MolSGroupWriting.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/MolSGroupWriting.cpp annobin: 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-grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o -MF CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o.d -o CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/MolFileStereochem.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/MolFileStereochem.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 46%] Built target rdchem /usr/bin/gmake -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DistGeom/CMakeFiles/DistGeometry.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 46%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DistGeom && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/DistGeom/CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o -MF CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o.d -o CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DistGeom/DistGeomUtils.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DistGeom/DistGeomUtils.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 46%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 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-c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/MolFileWriter.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/MolFileWriter.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 46%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DistGeom && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/DistGeom/CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o -MF CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o.d -o CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DistGeom/TriangleSmooth.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DistGeom/TriangleSmooth.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 46%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DistGeom && /usr/bin/g++ 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-I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/DistGeom/CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o -MF CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o.d -o CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DistGeom/ChiralViolationContrib.cpp annobin: 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-Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitDistGeometry.so.1 -o ../../lib/libRDKitDistGeometry.so.1.2023.03.2 CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o ../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../lib/libRDKitForceFieldHelpers.so.1.2023.03.2 ../../lib/libRDKitForceField.so.1.2023.03.2 ../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.81.0 cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/DistGeom && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitDistGeometry.so.1.2023.03.2 ../../lib/libRDKitDistGeometry.so.1 ../../lib/libRDKitDistGeometry.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 46%] Built target DistGeometry /usr/bin/gmake -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/DependInfo.cmake "--color=" gmake[2]: 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../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.81.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 47%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDWriter.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDWriter.cpp.o -MF CMakeFiles/FileParsers.dir/SDWriter.cpp.o.d -o CMakeFiles/FileParsers.dir/SDWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/SDWriter.cpp annobin: 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CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp: In function 'boost::python::api::object RDKit::UFFConfsHelper(ROMol&, int, int, double, bool)': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp:49:19: warning: redundant move in return statement [-Wredundant-move] 49 | return std::move(pyres); | ~~~~~~~~~^~~~~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp:49:19: note: remove 'std::move' call /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp: In function 'boost::python::api::object RDKit::MMFFConfsHelper(ROMol&, int, int, std::string, double, bool)': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp:66:19: warning: redundant move in return statement [-Wredundant-move] 66 | return std::move(pyres); | ~~~~~~~~~^~~~~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp:66:19: note: remove 'std::move' call /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp: In function 'boost::python::api::object RDKit::FFConfsHelper(ROMol&, ForceFields::PyForceField&, int, int)': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp:86:19: warning: redundant move in return statement [-Wredundant-move] 86 | return std::move(pyres); | ~~~~~~~~~^~~~~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp:86:19: note: remove 'std::move' call [ 48%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTWriter.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTWriter.cpp.o -MF CMakeFiles/FileParsers.dir/TDTWriter.cpp.o.d -o CMakeFiles/FileParsers.dir/TDTWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/TDTWriter.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/TDTWriter.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 48%] Linking CXX shared module ../../../../rdkit/Chem/rdForceFieldHelpers.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdForceFieldHelpers.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/rdForceFieldHelpers.so CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o ../../../../lib/libRDKitForceFieldHelpers.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitForceField.so.1.2023.03.2 ../../../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.81.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 48%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileParser.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileParser.cpp.o -MF CMakeFiles/FileParsers.dir/TplFileParser.cpp.o.d -o CMakeFiles/FileParsers.dir/TplFileParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/TplFileParser.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/TplFileParser.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 48%] Built target rdForceFieldHelpers /usr/bin/gmake -f Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 48%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/O3AAlignMolecules.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DO3AAlign_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLALIGN_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/O3AAlignMolecules.cpp.o -MF CMakeFiles/O3AAlign.dir/O3AAlignMolecules.cpp.o.d -o 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-I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o -MF CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o.d -o CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/TplFileWriter.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/TplFileWriter.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 48%] Linking CXX shared library ../../../lib/libRDKitO3AAlign.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/O3AAlign.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitO3AAlign.so.1 -o ../../../lib/libRDKitO3AAlign.so.1.2023.03.2 CMakeFiles/O3AAlign.dir/O3AAlignMolecules.cpp.o ../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitForceField.so.1.2023.03.2 ../../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 48%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBParser.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic 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Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 48%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/DistGeomHelpers && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDistGeomHelpers_EXPORTS -DRDKIT_DISTGEOMHELPERS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/CMLWriter.cpp.o -MF CMakeFiles/FileParsers.dir/CMLWriter.cpp.o.d -o CMakeFiles/FileParsers.dir/CMLWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/CMLWriter.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/CMLWriter.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 50%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/EmbedderUtils.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/DistGeomHelpers && /usr/bin/g++ -DBOOST_SERIALIZATION_DYN_LINK 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Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/EmbedderUtils.cpp.o -MF CMakeFiles/DistGeomHelpers.dir/EmbedderUtils.cpp.o.d -o CMakeFiles/DistGeomHelpers.dir/EmbedderUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/DistGeomHelpers/EmbedderUtils.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/DistGeomHelpers/EmbedderUtils.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 50%] Linking CXX shared library ../../../lib/libRDKitDistGeomHelpers.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeomHelpers.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic 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../../../lib/libRDKitForceField.so.1.2023.03.2 ../../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 50%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/XYZFileWriter.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/XYZFileWriter.cpp.o -MF CMakeFiles/FileParsers.dir/XYZFileWriter.cpp.o.d -o CMakeFiles/FileParsers.dir/XYZFileWriter.cpp.o -c 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-I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o -MF CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o.d -o CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o -c 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Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/AtomFeat.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitDescriptors.so.1 -o ../../../lib/libRDKitDescriptors.so.1.2023.03.2 CMakeFiles/Descriptors.dir/Crippen.cpp.o CMakeFiles/Descriptors.dir/BCUT.cpp.o CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o CMakeFiles/Descriptors.dir/MolSurf.cpp.o CMakeFiles/Descriptors.dir/Lipinski.cpp.o CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o CMakeFiles/Descriptors.dir/MQN.cpp.o CMakeFiles/Descriptors.dir/Property.cpp.o 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../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1 ../../../lib/libRDKitDescriptors.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 53%] Built target Descriptors /usr/bin/gmake -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2 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/builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/testChirality.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/testChirality.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 53%] Linking CXX executable graphmolMolOpsTest cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolMolOpsTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o -o graphmolMolOpsTest ../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../lib/libRDKitDepictor.so.1.2023.03.2 ../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so [ 53%] Linking CXX executable graphmoltestChirality cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestChirality.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o -o graphmoltestChirality ../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../lib/libRDKitDepictor.so.1.2023.03.2 ../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 53%] Built target graphmoltestChirality /usr/bin/gmake -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 53%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o -MF CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o.d -o CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/testPickler.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/testPickler.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 53%] Built target graphmolMolOpsTest /usr/bin/gmake -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol 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CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o.d -o CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/testPicklerGlobalSettings.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/testPicklerGlobalSettings.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 53%] Linking CXX executable graphmoltestPicklerGlobalSetting cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestPicklerGlobalSetting.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o -o graphmoltestPicklerGlobalSetting ../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../lib/libRDKitDepictor.so.1.2023.03.2 ../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so [ 53%] Linking CXX executable graphmoltestPickler cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestPickler.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o -o graphmoltestPickler ../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../lib/libRDKitDepictor.so.1.2023.03.2 ../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 53%] Built target graphmoltestPicklerGlobalSetting /usr/bin/gmake -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CMakeFiles/hanoiTest.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 54%] Building CXX object Code/GraphMol/CMakeFiles/hanoiTest.dir/hanoitest.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/hanoiTest.dir/hanoitest.cpp.o -MF CMakeFiles/hanoiTest.dir/hanoitest.cpp.o.d -o CMakeFiles/hanoiTest.dir/hanoitest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/hanoitest.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/hanoitest.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined In member function 'construct', inlined from 'construct' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from '_M_create_node' at /usr/include/c++/13/bits/stl_list.h:713:33, inlined from '_M_insert' at /usr/include/c++/13/bits/stl_list.h:2005:32, inlined from 'push_back' at /usr/include/c++/13/bits/stl_list.h:1306:24, inlined from 'push_dispatch' at /usr/include/boost/pending/container_traits.hpp:574:20, inlined from 'push' at /usr/include/boost/pending/container_traits.hpp:606:29, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:1073:29, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:2263:20, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:2271:20, inlined from 'copy_impl' at /usr/include/boost/graph/detail/adjacency_list.hpp:2198:27, inlined from '__ct ' at /usr/include/boost/graph/detail/adjacency_list.hpp:2123:69, inlined from '__ct ' at /usr/include/boost/graph/adjacency_list.hpp:321:65, inlined from '__ct_base ' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ROMol.h:348:9: /usr/include/c++/13/bits/new_allocator.h:187:11: warning: 'p' may be used uninitialized [-Wmaybe-uninitialized] 187 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^ /usr/include/boost/graph/detail/adjacency_list.hpp: In member function '__ct_base ': /usr/include/boost/graph/detail/adjacency_list.hpp:2270:41: note: 'p' was declared here 2270 | typename Config::edge_property_type p; | ^ gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 54%] Built target graphmoltestPickler /usr/bin/gmake -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 55%] Building CXX object Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o -MF CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o.d -o CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/resMolSupplierTest.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/resMolSupplierTest.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 55%] Linking CXX executable hanoiTest cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/hanoiTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/hanoiTest.dir/hanoitest.cpp.o -o hanoiTest ../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../lib/libRDKitDepictor.so.1.2023.03.2 ../../lib/libRDKitSubstructMatch.so.1.2023.03.2 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molBundleTest cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/molBundleTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o -o molBundleTest ../../lib/libRDKitFileParsers.so.1.2023.03.2 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Code/GraphMol/CMakeFiles/graphmolOrganometallicsCatch.dir/catch_organometallics.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 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-grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/graphmolTestsCatch.dir/catch_graphmol.cpp.o -o graphmolTestsCatch ../RDGeneral/librdkitCatch.so ../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../lib/libRDKitDepictor.so.1.2023.03.2 ../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so [ 57%] Linking CXX executable graphmolOrganometallicsCatch cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolOrganometallicsCatch.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/graphmolOrganometallicsCatch.dir/catch_organometallics.cpp.o -o graphmolOrganometallicsCatch ../RDGeneral/librdkitCatch.so ../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../lib/libRDKitDepictor.so.1.2023.03.2 ../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so In member function 'construct', inlined from 'construct' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from '_M_create_node' at /usr/include/c++/13/bits/stl_list.h:713:33, inlined from '_M_insert' at /usr/include/c++/13/bits/stl_list.h:2005:32, inlined from 'push_back' at /usr/include/c++/13/bits/stl_list.h:1306:24, inlined from 'push_dispatch' at /usr/include/boost/pending/container_traits.hpp:574:20, inlined from 'push' at /usr/include/boost/pending/container_traits.hpp:606:29, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:1073:29, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:2263:20, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:2271:20, inlined from 'copy_impl' at /usr/include/boost/graph/detail/adjacency_list.hpp:2198:27: /usr/include/c++/13/bits/new_allocator.h:187:11: warning: 'p' may be used uninitialized [-Wmaybe-uninitialized] 187 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^ /usr/include/boost/graph/detail/adjacency_list.hpp: In member function 'copy_impl': /usr/include/boost/graph/detail/adjacency_list.hpp:2270:41: note: 'p' was declared here 2270 | typename Config::edge_property_type p; | ^ gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 57%] Built target graphmolOrganometallicsCatch /usr/bin/gmake -f Code/GraphMol/CMakeFiles/graphmolSGroupCatch.dir/build.make Code/GraphMol/CMakeFiles/graphmolSGroupCatch.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CMakeFiles/graphmolSGroupCatch.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/CMakeFiles/graphmolSGroupCatch.dir/build.make Code/GraphMol/CMakeFiles/graphmolSGroupCatch.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 57%] Building CXX object Code/GraphMol/CMakeFiles/graphmolSGroupCatch.dir/catch_sgroups.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD 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CMakeFiles/graphmolSGroupCatch.dir/catch_sgroups.cpp.o.d -o CMakeFiles/graphmolSGroupCatch.dir/catch_sgroups.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/catch_sgroups.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/catch_sgroups.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 57%] Linking CXX executable graphmolSGroupCatch cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolSGroupCatch.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/graphmolSGroupCatch.dir/catch_sgroups.cpp.o -o graphmolSGroupCatch ../RDGeneral/librdkitCatch.so ../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../lib/libRDKitDepictor.so.1.2023.03.2 ../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 57%] Built target graphmolSGroupCatch /usr/bin/gmake -f Code/GraphMol/CMakeFiles/graphmolAdjustQueryCatch.dir/build.make Code/GraphMol/CMakeFiles/graphmolAdjustQueryCatch.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CMakeFiles/graphmolAdjustQueryCatch.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f 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-grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/graphmolAdjustQueryCatch.dir/catch_adjustquery.cpp.o -MF CMakeFiles/graphmolAdjustQueryCatch.dir/catch_adjustquery.cpp.o.d -o CMakeFiles/graphmolAdjustQueryCatch.dir/catch_adjustquery.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/catch_adjustquery.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/catch_adjustquery.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 57%] Built target graphmolTestsCatch /usr/bin/gmake -f Code/GraphMol/CMakeFiles/chiralityTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/chiralityTestsCatch.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CMakeFiles/chiralityTestsCatch.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/CMakeFiles/chiralityTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/chiralityTestsCatch.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 57%] Building CXX object Code/GraphMol/CMakeFiles/chiralityTestsCatch.dir/catch_chirality.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/CMakeFiles/chiralityTestsCatch.dir/catch_chirality.cpp.o -MF CMakeFiles/chiralityTestsCatch.dir/catch_chirality.cpp.o.d -o CMakeFiles/chiralityTestsCatch.dir/catch_chirality.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/catch_chirality.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/catch_chirality.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 58%] Linking CXX executable graphmolAdjustQueryCatch cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolAdjustQueryCatch.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/graphmolAdjustQueryCatch.dir/catch_adjustquery.cpp.o -o graphmolAdjustQueryCatch ../RDGeneral/librdkitCatch.so ../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../lib/libRDKitDepictor.so.1.2023.03.2 ../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../lib/libRDKitSmilesParse.so.1.2023.03.2 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/builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/testMolSupplier.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/testMolSupplier.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 62%] Linking CXX executable testMolSupplier cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolSupplier.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o -o testMolSupplier ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitRDStreams.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.81.0 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libz.so 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/testGeneralFileReader.dir/testGeneralFileReader.cpp.o -MF CMakeFiles/testGeneralFileReader.dir/testGeneralFileReader.cpp.o.d -o CMakeFiles/testGeneralFileReader.dir/testGeneralFileReader.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/testGeneralFileReader.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/testGeneralFileReader.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 62%] Linking CXX executable testGeneralFileReader cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testGeneralFileReader.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testGeneralFileReader.dir/testGeneralFileReader.cpp.o -o testGeneralFileReader ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitRDStreams.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.81.0 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libz.so /usr/lib64/libboost_iostreams.so.1.81.0 gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 62%] Built target testGeneralFileReader /usr/bin/gmake -f Code/GraphMol/FileParsers/CMakeFiles/testMultithreadedMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMultithreadedMolSupplier.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/CMakeFiles/testMultithreadedMolSupplier.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/FileParsers/CMakeFiles/testMultithreadedMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMultithreadedMolSupplier.dir/build gmake[2]: Entering directory 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/testMultithreadedMolSupplier.dir/testMultithreadedMolSupplier.cpp.o -MF CMakeFiles/testMultithreadedMolSupplier.dir/testMultithreadedMolSupplier.cpp.o.d -o CMakeFiles/testMultithreadedMolSupplier.dir/testMultithreadedMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/testMultithreadedMolSupplier.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/testMultithreadedMolSupplier.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 62%] Linking CXX executable fileParsersTest1 cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileParsersTest1.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/fileParsersTest1.dir/test1.cpp.o -o fileParsersTest1 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.81.0 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so [ 63%] Linking CXX executable testMultithreadedMolSupplier cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMultithreadedMolSupplier.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testMultithreadedMolSupplier.dir/testMultithreadedMolSupplier.cpp.o -o testMultithreadedMolSupplier ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitRDStreams.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libz.so ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_iostreams.so.1.81.0 gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 63%] Built target testMultithreadedMolSupplier /usr/bin/gmake -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make 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Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o -MF CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o.d -o CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/testMolWriter.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/testMolWriter.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 63%] Built target fileParsersTest1 /usr/bin/gmake -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 63%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/testTpls.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/g++ 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-Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/testTpls.cpp.o -MF CMakeFiles/testTplParser.dir/testTpls.cpp.o.d -o CMakeFiles/testTplParser.dir/testTpls.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/testTpls.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/testTpls.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 63%] Linking CXX executable testMolWriter cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolWriter.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic 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../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.81.0 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so [ 64%] Linking CXX executable testTplParser cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testTplParser.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testTplParser.dir/testTpls.cpp.o -o testTplParser ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.81.0 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 64%] Built target testTplParser /usr/bin/gmake -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o -MF CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o.d -o CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/testMol2ToMol.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/testMol2ToMol.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 65%] Built target testMolWriter /usr/bin/gmake -f 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Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/testSequence.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.81.0 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 65%] Built target testSequence /usr/bin/gmake -f Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers 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-DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/testExtendedStereoParsing.cpp.o -MF CMakeFiles/testExtendedStereoParsing.dir/testExtendedStereoParsing.cpp.o.d -o CMakeFiles/testExtendedStereoParsing.dir/testExtendedStereoParsing.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/testExtendedStereoParsing.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/testExtendedStereoParsing.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 65%] Linking CXX executable testMol2ToMol cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMol2ToMol.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o -o testMol2ToMol ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.81.0 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 65%] Built target testMol2ToMol /usr/bin/gmake -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/DependInfo.cmake "--color=" gmake[2]: 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Code/GraphMol/FileParsers/CMakeFiles/XYZFileParserCatchTest.dir/XYZFileParserCatchTest.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong 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../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.81.0 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so [ 66%] Linking CXX executable fileParsersCatchTest cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileParsersCatchTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 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Code/GraphMol/FileParsers/CMakeFiles/cdxmlParserCatchTest.dir/cdxml_parser_catch.cpp.o -MF CMakeFiles/cdxmlParserCatchTest.dir/cdxml_parser_catch.cpp.o.d -o CMakeFiles/cdxmlParserCatchTest.dir/cdxml_parser_catch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/cdxml_parser_catch.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/cdxml_parser_catch.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 66%] Linking CXX executable cdxmlParserCatchTest cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/cdxmlParserCatchTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic 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Code/GraphMol/FileParsers/CMakeFiles/molfileStereoCatchTest.dir/molfile_stereo_catch.cpp.o -MF CMakeFiles/molfileStereoCatchTest.dir/molfile_stereo_catch.cpp.o.d -o CMakeFiles/molfileStereoCatchTest.dir/molfile_stereo_catch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/molfile_stereo_catch.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/molfile_stereo_catch.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 66%] Built target fileParsersCatchTest /usr/bin/gmake -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 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CMakeFiles/testSubstructMatch.dir/test1.cpp.o -o testSubstructMatch ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.81.0 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so [ 66%] Linking CXX executable substructTestCatch cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_link_script 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Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MDLParser.cpp.o -MF CMakeFiles/ChemReactions.dir/MDLParser.cpp.o.d -o CMakeFiles/ChemReactions.dir/MDLParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/MDLParser.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/MDLParser.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 66%] Linking CXX executable testGenericGroups cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/GenericGroups && /usr/bin/cmake -E cmake_link_script CMakeFiles/testGenericGroups.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection 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../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so [ 68%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK 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-fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o -MF CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o.d -o CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/ReactionWriter.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/ReactionWriter.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 68%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB 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-Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o -MF CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o.d -o CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/ReactionDepict.cpp [ 68%] Built target testChemTransforms /usr/bin/gmake -f Code/GraphMol/ChemTransforms/CMakeFiles/chemTransformsTestCatch.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/chemTransformsTestCatch.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2023_03_2 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chemTransformsTestCatch ../../RDGeneral/librdkitCatch.so ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so [ 68%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions && 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/usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 70%] Built target testFragCatalog /usr/bin/gmake -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory 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Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog/Wrap && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security 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Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o -MF CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o.d -o CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog/Wrap/FragCatGenerator.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog/Wrap/FragCatGenerator.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 70%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 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-Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/rdfragcatalog.so CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o ../../../../lib/libRDKitFragCatalog.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.81.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 70%] Linking CXX shared library ../../../lib/libRDKitChemReactions.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemReactions.dir/link.txt --verbose=1 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CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o CMakeFiles/ChemReactions.dir/PNGParser.cpp.o CMakeFiles/ChemReactions.dir/CDXMLParser.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 70%] Built target rdfragcatalog /usr/bin/gmake -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make 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Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/test.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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-Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testDescriptors.dir/test.cpp.o -o testDescriptors ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 72%] Linking CXX executable testBCUT cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testBCUT.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld 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-I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/Descriptors/CMakeFiles/descriptorsTestCatch.dir/catch_tests.cpp.o -MF CMakeFiles/descriptorsTestCatch.dir/catch_tests.cpp.o.d -o CMakeFiles/descriptorsTestCatch.dir/catch_tests.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors/catch_tests.cpp annobin: 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-I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o -MF CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o.d -o CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o -c 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-Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/descriptorsTestCatch.dir/catch_tests.cpp.o -o descriptorsTestCatch ../../RDGeneral/librdkitCatch.so ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 72%] Built target descriptorsTestCatch /usr/bin/gmake -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 73%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/test1.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/test1.cpp.o -MF CMakeFiles/testFingerprints.dir/test1.cpp.o.d -o CMakeFiles/testFingerprints.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/test1.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/test1.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 73%] Linking CXX shared module ../../../../rdkit/Chem/rdMolDescriptors.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolDescriptors.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/rdMolDescriptors.so CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o ../../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.81.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 73%] Linking CXX executable testFingerprints cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFingerprints.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 73%] Built target testFingerprints /usr/bin/gmake -f Code/GraphMol/Fingerprints/CMakeFiles/testMHFPFingerprint.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testMHFPFingerprint.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 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-DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/testFingerprintGenerators.cpp.o -MF CMakeFiles/testFingerprintGenerators.dir/testFingerprintGenerators.cpp.o.d -o CMakeFiles/testFingerprintGenerators.dir/testFingerprintGenerators.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/testFingerprintGenerators.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/testFingerprintGenerators.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 73%] Linking CXX executable testMHFPFingerprint cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMHFPFingerprint.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testMHFPFingerprint.dir/testMHFPFingerprint.cpp.o -o testMHFPFingerprint ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 73%] Built target testMHFPFingerprint /usr/bin/gmake -f Code/GraphMol/Fingerprints/CMakeFiles/fpTestCatch.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/fpTestCatch.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 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Code/GraphMol/Fingerprints/CMakeFiles/fpTestCatch.dir/catch_tests.cpp.o -MF CMakeFiles/fpTestCatch.dir/catch_tests.cpp.o.d -o CMakeFiles/fpTestCatch.dir/catch_tests.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/catch_tests.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/catch_tests.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 73%] Linking CXX executable fpTestCatch cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/fpTestCatch.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/fpTestCatch.dir/catch_tests.cpp.o -o fpTestCatch ../../RDGeneral/librdkitCatch.so ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so [ 73%] Linking CXX executable testFingerprintGenerators cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFingerprintGenerators.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testFingerprintGenerators.dir/testFingerprintGenerators.cpp.o -o testFingerprintGenerators ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 73%] Built target fpTestCatch /usr/bin/gmake -f Code/GraphMol/Fingerprints/CMakeFiles/fpGenTestCatch.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/fpGenTestCatch.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints 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-I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/fpGenTestCatch.dir/fpgen_catch_tests.cpp.o -MF CMakeFiles/fpGenTestCatch.dir/fpgen_catch_tests.cpp.o.d -o CMakeFiles/fpGenTestCatch.dir/fpgen_catch_tests.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/fpgen_catch_tests.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/fpgen_catch_tests.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 73%] Built target testFingerprintGenerators /usr/bin/gmake -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms 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-I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/test1.cpp.o -MF CMakeFiles/testMolTransforms.dir/test1.cpp.o.d -o CMakeFiles/testMolTransforms.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms/test1.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms/test1.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 73%] Linking CXX executable fpGenTestCatch cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/fpGenTestCatch.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 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[ 73%] Linking CXX executable testMolTransforms cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolTransforms.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testMolTransforms.dir/test1.cpp.o -o testMolTransforms ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 73%] Built target fpGenTestCatch /usr/bin/gmake -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make 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'/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 73%] Building CXX object Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/MMFF && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 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Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpersMultiThread.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpersMultiThread.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/MMFF /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/MMFF /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpersMultiThread.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpersMultiThread.dir/build.make 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defined [ 73%] Linking CXX executable testMMFFForceFieldHelpersMultiThread cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/MMFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMFFForceFieldHelpersMultiThread.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testMMFFForceFieldHelpersMultiThread.dir/testMultiThread.cpp.o -o testMMFFForceFieldHelpersMultiThread ../../../../lib/libRDKitDistGeomHelpers.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../../lib/libRDKitDistGeometry.so.1.2023.03.2 ../../../../lib/libRDKitForceFieldHelpers.so.1.2023.03.2 ../../../../lib/libRDKitForceField.so.1.2023.03.2 ../../../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../../lib/libRDKitAlignment.so.1.2023.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 73%] Built target testMMFFForceFieldHelpersMultiThread /usr/bin/gmake -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/UFF /builddir/build/BUILD/rdkit-Release_2023_03_2 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-DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o -MF CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o.d -o CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/UFF/testUFFHelpers.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/UFF/testUFFHelpers.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 74%] Linking CXX executable testMMFFForceFieldHelpers cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/MMFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMFFForceFieldHelpers.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection 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/builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/CrystalFF && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection 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Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 75%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/DistGeomHelpers && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 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cmake_link_script CMakeFiles/testUFFForceFieldHelpers.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o -o testUFFForceFieldHelpers ../../../../lib/libRDKitDistGeomHelpers.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 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distGeomHelpersCatch cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/distGeomHelpersCatch.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/distGeomHelpersCatch.dir/catch_tests.cpp.o -o distGeomHelpersCatch 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../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so [ 75%] Linking CXX executable testDistGeomHelpers cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDistGeomHelpers.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld 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../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 75%] Built target distGeomHelpersCatch /usr/bin/gmake -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/DistGeomHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 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CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o.d -o CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 75%] Built target testDistGeomHelpers /usr/bin/gmake -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign 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-I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o -MF CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o.d -o CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign/testMolAlign.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign/testMolAlign.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 75%] Linking CXX executable testMolAlign cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolAlign.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o -o testMolAlign ../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitDistGeomHelpers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 ../../../lib/libRDKitDistGeometry.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitForceField.so.1.2023.03.2 ../../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 75%] Linking CXX shared module ../../../../rdkit/Chem/rdDistGeom.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/DistGeomHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdDistGeom.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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../../../../lib/libRDKitForceFieldHelpers.so.1.2023.03.2 ../../../../lib/libRDKitForceField.so.1.2023.03.2 ../../../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../../lib/libRDKitAlignment.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.81.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 75%] Built target testMolAlign /usr/bin/gmake -f Code/GraphMol/MolAlign/CMakeFiles/testO3AAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testO3AAlign.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign/CMakeFiles/testO3AAlign.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f 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/usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/MolAlign/CMakeFiles/testO3AAlign.dir/testO3AAlign.cpp.o -MF CMakeFiles/testO3AAlign.dir/testO3AAlign.cpp.o.d -o CMakeFiles/testO3AAlign.dir/testO3AAlign.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign/testO3AAlign.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign/testO3AAlign.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 75%] Built target rdDistGeom /usr/bin/gmake -f Code/GraphMol/MolAlign/CMakeFiles/molAlignCatchTest.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/molAlignCatchTest.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign/CMakeFiles/molAlignCatchTest.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/MolAlign/CMakeFiles/molAlignCatchTest.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/molAlignCatchTest.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 75%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/molAlignCatchTest.dir/catch_tests.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/MolAlign/CMakeFiles/molAlignCatchTest.dir/catch_tests.cpp.o -MF CMakeFiles/molAlignCatchTest.dir/catch_tests.cpp.o.d -o CMakeFiles/molAlignCatchTest.dir/catch_tests.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign/catch_tests.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign/catch_tests.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 75%] Linking CXX executable molAlignCatchTest cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/molAlignCatchTest.dir/link.txt --verbose=1 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../../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../../lib/libRDKitAlignment.so.1.2023.03.2 ../../../../lib/libRDKitForceFieldHelpers.so.1.2023.03.2 ../../../../lib/libRDKitForceField.so.1.2023.03.2 ../../../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o -MF CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o.d -o CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/MolDraw2DDetails.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/MolDraw2DDetails.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 75%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/freetype2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o -MF CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o.d -o CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/MolDraw2DUtils.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/MolDraw2DUtils.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 75%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DFMCS_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o -MF CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o.d -o CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/SubstructMatchCustom.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/SubstructMatchCustom.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 75%] Linking CXX shared library ../../../lib/libRDKitFMCS.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_link_script CMakeFiles/FMCS.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitFMCS.so.1 -o ../../../lib/libRDKitFMCS.so.1.2023.03.2 CMakeFiles/FMCS.dir/FMCS.cpp.o CMakeFiles/FMCS.dir/Seed.cpp.o CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so [ 75%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/AtomSymbol.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/freetype2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/AtomSymbol.cpp.o -MF CMakeFiles/MolDraw2D.dir/AtomSymbol.cpp.o.d -o CMakeFiles/MolDraw2D.dir/AtomSymbol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/AtomSymbol.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/AtomSymbol.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined In member function 'construct', inlined from 'construct' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from '_M_create_node' at /usr/include/c++/13/bits/stl_list.h:713:33, inlined from '_M_insert' at /usr/include/c++/13/bits/stl_list.h:2005:32, inlined from 'push_back' at /usr/include/c++/13/bits/stl_list.h:1306:24, inlined from 'push_dispatch' at /usr/include/boost/pending/container_traits.hpp:574:20, inlined from 'push' at /usr/include/boost/pending/container_traits.hpp:606:29, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:1073:29, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:2263:20, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:2271:20, inlined from 'addBond' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Graph.h:38:45, inlined from 'addBond' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Seed.cpp:46:19: /usr/include/c++/13/bits/new_allocator.h:187:11: warning: 'p' may be used uninitialized [-Wmaybe-uninitialized] 187 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^ /usr/include/boost/graph/detail/adjacency_list.hpp: In member function 'addBond': /usr/include/boost/graph/detail/adjacency_list.hpp:2270:41: note: 'p' was declared here 2270 | typename Config::edge_property_type p; | ^ In member function 'construct', inlined from 'construct' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from '_M_create_node' at /usr/include/c++/13/bits/stl_list.h:713:33, inlined from '_M_insert' at /usr/include/c++/13/bits/stl_list.h:2005:32, inlined from 'push_back' at /usr/include/c++/13/bits/stl_list.h:1306:24, inlined from 'push_dispatch' at /usr/include/boost/pending/container_traits.hpp:574:20, inlined from 'push' at /usr/include/boost/pending/container_traits.hpp:606:29, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:1073:29, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:2263:20, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:2271:20, inlined from 'copy_impl' at /usr/include/boost/graph/detail/adjacency_list.hpp:2198:27: /usr/include/c++/13/bits/new_allocator.h:187:11: warning: 'p' may be used uninitialized [-Wmaybe-uninitialized] 187 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^ /usr/include/boost/graph/detail/adjacency_list.hpp: In member function 'copy_impl': /usr/include/boost/graph/detail/adjacency_list.hpp:2270:41: note: 'p' was declared here 2270 | typename Config::edge_property_type p; | ^ In member function 'construct', inlined from 'construct' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from '_M_create_node' at /usr/include/c++/13/bits/stl_list.h:713:33, inlined from '_M_insert' at /usr/include/c++/13/bits/stl_list.h:2005:32, inlined from 'push_back' at /usr/include/c++/13/bits/stl_list.h:1306:24, inlined from 'push_dispatch' at /usr/include/boost/pending/container_traits.hpp:574:20, inlined from 'push' at /usr/include/boost/pending/container_traits.hpp:606:29, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:1073:29, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:2263:20, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:2271:20, inlined from 'addBond' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Graph.h:38:45, inlined from 'init' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/MaximumCommonSubgraph.cpp:227:34: /usr/include/c++/13/bits/new_allocator.h:187:11: warning: 'p' may be used uninitialized [-Wmaybe-uninitialized] 187 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^ /usr/include/boost/graph/detail/adjacency_list.hpp: In member function 'init': /usr/include/boost/graph/detail/adjacency_list.hpp:2270:41: note: 'p' was declared here 2270 | typename Config::edge_property_type p; | ^ [ 76%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawAnnotation.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/freetype2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawAnnotation.cpp.o -MF CMakeFiles/MolDraw2D.dir/DrawAnnotation.cpp.o.d -o CMakeFiles/MolDraw2D.dir/DrawAnnotation.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/DrawAnnotation.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/DrawAnnotation.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined In member function 'construct', inlined from 'construct' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from '_M_create_node' at /usr/include/c++/13/bits/stl_list.h:713:33, inlined from '_M_insert' at /usr/include/c++/13/bits/stl_list.h:2005:32, inlined from 'push_back' at /usr/include/c++/13/bits/stl_list.h:1306:24, inlined from 'push_dispatch' at /usr/include/boost/pending/container_traits.hpp:574:20, inlined from 'push' at /usr/include/boost/pending/container_traits.hpp:606:29, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:1073:29, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:2263:20, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:2271:20, inlined from 'addBond' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Graph.h:38:45, inlined from 'makeRingGraph.isra' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/RingMatchTableSet.h:231:16: /usr/include/c++/13/bits/new_allocator.h:187:11: warning: 'p' may be used uninitialized [-Wmaybe-uninitialized] 187 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^ /usr/include/boost/graph/detail/adjacency_list.hpp: In function 'makeRingGraph.isra': /usr/include/boost/graph/detail/adjacency_list.hpp:2270:41: note: 'p' was declared here 2270 | typename Config::edge_property_type p; | ^ cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFMCS.so.1.2023.03.2 ../../../lib/libRDKitFMCS.so.1 ../../../lib/libRDKitFMCS.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 76%] Built target FMCS /usr/bin/gmake -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 76%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/hashfunctions.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolHash && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolHash_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLHASH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/hashfunctions.cpp.o -MF CMakeFiles/MolHash.dir/hashfunctions.cpp.o.d -o CMakeFiles/MolHash.dir/hashfunctions.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolHash/hashfunctions.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolHash/hashfunctions.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 76%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawMol.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT 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-I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/normalize.cpp.o -MF CMakeFiles/MolHash.dir/normalize.cpp.o.d -o CMakeFiles/MolHash.dir/normalize.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolHash/normalize.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolHash/normalize.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 76%] Linking CXX shared library ../../../lib/libRDKitMolHash.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolHash.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitMolHash.so.1 -o ../../../lib/libRDKitMolHash.so.1.2023.03.2 CMakeFiles/MolHash.dir/hashfunctions.cpp.o CMakeFiles/MolHash.dir/normalize.cpp.o ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolHash.so.1.2023.03.2 ../../../lib/libRDKitMolHash.so.1 ../../../lib/libRDKitMolHash.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 76%] Built target MolHash /usr/bin/gmake -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 77%] Building CXX object Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/MMPA.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MMPA && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMMPA_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MMPA_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/MMPA.cpp.o -MF CMakeFiles/MMPA.dir/MMPA.cpp.o.d -o CMakeFiles/MMPA.dir/MMPA.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MMPA/MMPA.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MMPA/MMPA.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 77%] Linking CXX shared library ../../../lib/libRDKitMMPA.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMPA.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitMMPA.so.1 -o ../../../lib/libRDKitMMPA.so.1.2023.03.2 CMakeFiles/MMPA.dir/MMPA.cpp.o ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MMPA && /usr/bin/cmake 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/usr/bin/gmake -f Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/build.make Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 77%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/catch_tests.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 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Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawMolMCH.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/freetype2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches 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Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/Edge.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong 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Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule2.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong 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../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.81.0 /usr/lib64/libcairo.so [ 79%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule3.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK 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/builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables 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/builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables 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CMakeFiles/testCIPLabeler.dir/configs/Sp2Bond.cpp.o CMakeFiles/testCIPLabeler.dir/configs/Tetrahedral.cpp.o CMakeFiles/testCIPLabeler.dir/rules/Rule1a.cpp.o CMakeFiles/testCIPLabeler.dir/rules/Rule1b.cpp.o CMakeFiles/testCIPLabeler.dir/rules/Rule2.cpp.o CMakeFiles/testCIPLabeler.dir/rules/Rule3.cpp.o CMakeFiles/testCIPLabeler.dir/rules/Rule4a.cpp.o CMakeFiles/testCIPLabeler.dir/rules/Rule4b.cpp.o CMakeFiles/testCIPLabeler.dir/rules/Rule4c.cpp.o CMakeFiles/testCIPLabeler.dir/rules/Rule5.cpp.o CMakeFiles/testCIPLabeler.dir/rules/Rule5New.cpp.o CMakeFiles/testCIPLabeler.dir/rules/Rule6.cpp.o CMakeFiles/testCIPLabeler.dir/rules/SequenceRule.cpp.o -o testCIPLabeler ../../RDGeneral/librdkitCatch.so ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolDraw2D.so.1.2023.03.2 ../../../lib/libRDKitMolDraw2D.so.1 ../../../lib/libRDKitMolDraw2D.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 80%] Built target MolDraw2D /usr/bin/gmake -f Code/GraphMol/Deprotect/CMakeFiles/Deprotect.dir/build.make Code/GraphMol/Deprotect/CMakeFiles/Deprotect.dir/depend gmake[2]: Entering directory 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CMakeFiles/RGroupDecomposition.dir/RGroupScore.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/RGroupDecomposition/RGroupScore.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/RGroupDecomposition/RGroupScore.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined In member function '__ct ', inlined from 'dereference' at /usr/include/boost/python/stl_iterator.hpp:48:61, inlined from 'dereference' at /usr/include/boost/iterator/iterator_facade.hpp:631:32, inlined from 'operator*' at /usr/include/boost/iterator/iterator_facade.hpp:737:69, inlined from '_M_range_initialize' at /usr/include/c++/13/bits/stl_vector.h:1670:20, inlined from '__ct ' at /usr/include/c++/13/bits/stl_vector.h:708:23, inlined from 'pythonObjectToVect' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDBoost/Wrap.h:140:15, inlined from 'molzipHelper' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/MolOps.cpp:951:51: /usr/include/boost/smart_ptr/shared_ptr.hpp:458:66: warning: 'MEM[(const struct shared_ptr &)&D.17790 + 24].px' may be used uninitialized [-Wmaybe-uninitialized] 458 | shared_ptr( shared_ptr const & r ) BOOST_SP_NOEXCEPT : px( r.px ), pn( r.pn ) | ^ /usr/include/boost/python/stl_iterator.hpp: In function 'molzipHelper': /usr/include/boost/python/stl_iterator.hpp:48:16: note: '' declared here 48 | return extract(this->impl_.current().get())(); | ^ gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 83%] Built target rdmolops /usr/bin/gmake -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap 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-isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o -MF CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o.d -o CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/SmilesMolSupplier.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/SmilesMolSupplier.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 84%] Linking CXX shared library ../../../lib/libRDKitMolEnumerator.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolEnumerator && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolEnumerator.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitMolEnumerator.so.1 -o ../../../lib/libRDKitMolEnumerator.so.1.2023.03.2 CMakeFiles/MolEnumerator.dir/MolEnumerator.cpp.o CMakeFiles/MolEnumerator.dir/PositionVariation.cpp.o CMakeFiles/MolEnumerator.dir/LinkNode.cpp.o CMakeFiles/MolEnumerator.dir/RepeatUnit.cpp.o ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 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-I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o -MF CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o.d -o CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/SmilesWriter.cpp annobin: 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/builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2023.03.2\" -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/usr/include/pgsql/server -I/usr/include/python3.11 -I/usr/include/freetype2 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/adapter.cpp.o -MF CMakeFiles/rdkit.dir/adapter.cpp.o.d -o CMakeFiles/rdkit.dir/adapter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/adapter.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/adapter.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 85%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap && /usr/bin/g++ 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-mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o -MF CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o.d -o CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/TDTWriter.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/TDTWriter.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/adapter.cpp: In function 'const char* makeMolJSON(CROMol)': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/adapter.cpp:433:43: warning: unused parameter 'data' [-Wunused-parameter] 433 | extern "C" const char *makeMolJSON(CROMol data) { | ~~~~~~~^~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/adapter.cpp: In function 'void* parseMolJSON(char*, bool)': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/adapter.cpp:450:38: warning: unused parameter 'data' [-Wunused-parameter] 450 | extern "C" CROMol parseMolJSON(char *data, bool warnOnFail) { | ~~~~~~^~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/adapter.cpp:450:49: warning: unused parameter 'warnOnFail' [-Wunused-parameter] 450 | extern "C" CROMol parseMolJSON(char *data, bool warnOnFail) { | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/adapter.cpp: In function 'void* makeAvalonBFP(CROMol, bool, unsigned int)': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/adapter.cpp:1584:38: warning: unused parameter 'data' [-Wunused-parameter] 1584 | extern "C" CBfp makeAvalonBFP(CROMol data, bool isQuery, | ~~~~~~~^~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/adapter.cpp:1584:49: warning: unused parameter 'isQuery' [-Wunused-parameter] 1584 | extern "C" CBfp makeAvalonBFP(CROMol data, bool isQuery, | ~~~~~^~~~~~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/adapter.cpp:1585:44: warning: unused parameter 'bitFlags' [-Wunused-parameter] 1585 | unsigned int bitFlags) { | ~~~~~~~~~~~~~^~~~~~~~ [ 85%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_op.c.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit && /usr/bin/gcc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2023.03.2\" -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/usr/include/pgsql/server -I/usr/include/python3.11 -I/usr/include/freetype2 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_op.c.o -MF CMakeFiles/rdkit.dir/bfp_op.c.o.d -o CMakeFiles/rdkit.dir/bfp_op.c.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/bfp_op.c [ 85%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/cache.c.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit && /usr/bin/gcc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2023.03.2\" -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/usr/include/pgsql/server -I/usr/include/python3.11 -I/usr/include/freetype2 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/cache.c.o -MF CMakeFiles/rdkit.dir/cache.c.o.d -o CMakeFiles/rdkit.dir/cache.c.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/cache.c [ 85%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/guc.c.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit && /usr/bin/gcc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB 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-DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/usr/include/pgsql/server -I/usr/include/python3.11 -I/usr/include/freetype2 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/low_gist.c.o -MF CMakeFiles/rdkit.dir/low_gist.c.o.d -o CMakeFiles/rdkit.dir/low_gist.c.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/low_gist.c [ 85%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/mol_op.c.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit && /usr/bin/gcc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2023.03.2\" -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/usr/include/pgsql/server -I/usr/include/python3.11 -I/usr/include/freetype2 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/mol_op.c.o -MF CMakeFiles/rdkit.dir/mol_op.c.o.d -o CMakeFiles/rdkit.dir/mol_op.c.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/mol_op.c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/mol_op.c: In function 'mol_nm_hash': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/mol_op.c:358:7: warning: unused variable 'len' [-Wunused-variable] 358 | int len; | ^~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_smiles_transition': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/mol_op.c:455:1: warning: control reaches end of non-void function [-Wreturn-type] 455 | } | ^ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_mol_transition': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/mol_op.c:590:1: warning: control reaches end of non-void function [-Wreturn-type] 590 | } | ^ [ 85%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rdkit_gist.c.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit && /usr/bin/gcc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2023.03.2\" -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/usr/include/pgsql/server -I/usr/include/python3.11 -I/usr/include/freetype2 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rdkit_gist.c.o -MF CMakeFiles/rdkit.dir/rdkit_gist.c.o.d -o CMakeFiles/rdkit.dir/rdkit_gist.c.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/rdkit_gist.c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/rdkit_gist.c: In function 'soergeldist': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/rdkit_gist.c:237:10: warning: unused variable 'd' [-Wunused-variable] 237 | double d; | ^ [ 86%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_gist.c.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit && /usr/bin/gcc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_gist.c.o -MF CMakeFiles/rdkit.dir/bfp_gist.c.o.d -o CMakeFiles/rdkit.dir/bfp_gist.c.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/bfp_gist.c [ 86%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o -MF CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o.d -o CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/PDBWriter.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/PDBWriter.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 86%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_gin.c.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit && /usr/bin/gcc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2023.03.2\" -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/usr/include/pgsql/server -I/usr/include/python3.11 -I/usr/include/freetype2 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_gin.c.o -MF CMakeFiles/rdkit.dir/bfp_gin.c.o.d -o CMakeFiles/rdkit.dir/bfp_gin.c.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/bfp_gin.c [ 86%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bitstring.c.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit && /usr/bin/gcc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2023.03.2\" -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/usr/include/pgsql/server -I/usr/include/python3.11 -I/usr/include/freetype2 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bitstring.c.o -MF CMakeFiles/rdkit.dir/bitstring.c.o.d -o CMakeFiles/rdkit.dir/bitstring.c.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/bitstring.c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/bitstring.c: In function 'bitstringUnion': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/bitstring.c:64:7: warning: unused variable 'i' [-Wunused-variable] 64 | int i; | ^ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/bitstring.c: In function 'bitstringIntersection': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/bitstring.c:96:7: warning: unused variable 'i' [-Wunused-variable] 96 | int i; | ^ [ 86%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rdkit_io.c.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit && /usr/bin/gcc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2023.03.2\" -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/usr/include/pgsql/server -I/usr/include/python3.11 -I/usr/include/freetype2 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rdkit_io.c.o -MF CMakeFiles/rdkit.dir/rdkit_io.c.o.d -o CMakeFiles/rdkit.dir/rdkit_io.c.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/rdkit_io.c [ 86%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rxn_op.c.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit && /usr/bin/gcc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2023.03.2\" -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/usr/include/pgsql/server -I/usr/include/python3.11 -I/usr/include/freetype2 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rxn_op.c.o -MF CMakeFiles/rdkit.dir/rxn_op.c.o.d -o CMakeFiles/rdkit.dir/rxn_op.c.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/rxn_op.c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/rxn_op.c:134:3: warning: multi-line comment [-Wcomment] 134 | // /* keep compiler quiet - no extra ; */ \ | ^ [ 86%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/sfp_op.c.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit && /usr/bin/gcc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2023.03.2\" -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/usr/include/pgsql/server -I/usr/include/python3.11 -I/usr/include/freetype2 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/sfp_op.c.o -MF CMakeFiles/rdkit.dir/sfp_op.c.o.d -o CMakeFiles/rdkit.dir/sfp_op.c.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/sfp_op.c [ 86%] Linking CXX shared library librdkit.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/sql /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/sql cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/data /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/data cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/expected /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/expected cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdkit.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,librdkit.so -o librdkit.so CMakeFiles/rdkit.dir/adapter.cpp.o CMakeFiles/rdkit.dir/bfp_op.c.o CMakeFiles/rdkit.dir/cache.c.o CMakeFiles/rdkit.dir/guc.c.o CMakeFiles/rdkit.dir/low_gist.c.o CMakeFiles/rdkit.dir/mol_op.c.o CMakeFiles/rdkit.dir/rdkit_gist.c.o CMakeFiles/rdkit.dir/bfp_gist.c.o CMakeFiles/rdkit.dir/bfp_gin.c.o CMakeFiles/rdkit.dir/bitstring.c.o CMakeFiles/rdkit.dir/rdkit_io.c.o CMakeFiles/rdkit.dir/rxn_op.c.o CMakeFiles/rdkit.dir/sfp_op.c.o -L/builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/lib64 /usr/lib64/libpq.so ../../../lib/libRDKitRDInchiLib.so.1.2023.03.2 /usr/lib64/libinchi.so ../../../lib/libRDKitMolDraw2D.so.1.2023.03.2 ../../../lib/libRDKitMolHash.so.1.2023.03.2 ../../../lib/libRDKitFMCS.so.1.2023.03.2 ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 /usr/lib64/libcairo.so /usr/lib64/libfreetype.so ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 86%] Built target rdkit /usr/bin/gmake -f External/INCHI-API/CMakeFiles/testInchi.dir/build.make External/INCHI-API/CMakeFiles/testInchi.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2023_03_2/External/INCHI-API/CMakeFiles/testInchi.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f 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/builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic 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/usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so ../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 86%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MultithreadedSDMolSupplier.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK 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Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MultithreadedSDMolSupplier.cpp.o -MF CMakeFiles/rdmolfiles.dir/MultithreadedSDMolSupplier.cpp.o.d -o CMakeFiles/rdmolfiles.dir/MultithreadedSDMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/MultithreadedSDMolSupplier.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/MultithreadedSDMolSupplier.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 86%] Built target testInchi /usr/bin/gmake -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 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-fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../rdkit/Chem/rdmolfiles.so CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/MaeMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/MaeWriter.cpp.o CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o 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/usr/lib64/libboost_python311.so.1.81.0 gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 87%] Built target rdmolfiles /usr/bin/gmake -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f 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-I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o -MF CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o.d -o CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/testReactionFingerprints.cpp annobin: 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../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.81.0 gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 87%] Built target testReactionFingerprints /usr/bin/gmake -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2023_03_2 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../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.81.0 gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 87%] Built target testEnumeration /usr/bin/gmake -f Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.81.0 [ 87%] Linking CXX executable rxnTestCatch cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/rxnTestCatch.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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/usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.81.0 gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 87%] Built target testReaction /usr/bin/gmake -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 87%] Building CXX object Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o cd 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'/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 87%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o -MF CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o.d -o CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/MolStandardize.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/MolStandardize.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined In file included from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/smart_ptr.hpp:19, from /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Numerics/Vector.h:23, from /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/point.h:24, from /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolPickler.h:14, from /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp:34: In member function 'boost::shared_ptr::shared_ptr(boost::shared_ptr const&)', inlined from 'RDKit::RunReactant(RDKit::ChemicalReaction*, boost::python::api::object, unsigned int)_object*' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp:129:14: /usr/include/boost/smart_ptr/shared_ptr.hpp:458:66: warning: 'MEM[(const struct shared_ptr &)&D.538227 + 24].px' may be used uninitialized [-Wmaybe-uninitialized] 458 | shared_ptr( shared_ptr const & r ) BOOST_SP_NOEXCEPT : px( r.px ), pn( r.pn ) | ~~^~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp: In function 'RDKit::RunReactant(RDKit::ChemicalReaction*, boost::python::api::object, unsigned int)_object*': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp:129:30: note: '' declared here 129 | ROMOL_SPTR react = python::extract(reactant); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/shared_ptr.hpp:17: In member function 'boost::detail::shared_count::shared_count(boost::detail::shared_count const&)', inlined from 'boost::shared_ptr::shared_ptr(boost::shared_ptr const&)' at /usr/include/boost/smart_ptr/shared_ptr.hpp:458:72, inlined from 'RDKit::RunReactant(RDKit::ChemicalReaction*, boost::python::api::object, unsigned int)_object*' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp:129:14: /usr/include/boost/smart_ptr/detail/shared_count.hpp:438:67: warning: 'MEM[(const struct shared_count &)&D.538227 + 32].pi_' may be used uninitialized [-Wmaybe-uninitialized] 438 | shared_count(shared_count const & r) BOOST_SP_NOEXCEPT: pi_(r.pi_) | ~~^~~ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp: In function 'RDKit::RunReactant(RDKit::ChemicalReaction*, boost::python::api::object, unsigned int)_object*': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp:129:30: note: '' declared here 129 | ROMOL_SPTR react = python::extract(reactant); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 87%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Metal.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Metal.cpp.o -MF CMakeFiles/MolStandardize.dir/Metal.cpp.o.d -o CMakeFiles/MolStandardize.dir/Metal.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Metal.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Metal.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 87%] Linking CXX shared module ../../../../rdkit/Chem/rdChemReactions.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdChemReactions.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/rdChemReactions.so CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o ../../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.81.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 88%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Normalize.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Normalize.cpp.o -MF CMakeFiles/MolStandardize.dir/Normalize.cpp.o.d -o CMakeFiles/MolStandardize.dir/Normalize.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Normalize.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Normalize.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 88%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Validate.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Validate.cpp.o -MF CMakeFiles/MolStandardize.dir/Validate.cpp.o.d -o CMakeFiles/MolStandardize.dir/Validate.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Validate.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Validate.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined In member function '__ct ', inlined from 'RunReactant' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp:129:14: /usr/include/boost/smart_ptr/shared_ptr.hpp:458:66: warning: 'MEM[(const struct shared_ptr &)&D.13060 + 24].px' may be used uninitialized [-Wmaybe-uninitialized] 458 | shared_ptr( shared_ptr const & r ) BOOST_SP_NOEXCEPT : px( r.px ), pn( r.pn ) | ^ /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp: In function 'RunReactant': /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp:129:30: note: '' declared here 129 | ROMOL_SPTR react = python::extract(reactant); | ^ gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 88%] Built target rdChemReactions /usr/bin/gmake -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 88%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/test1.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/freetype2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/test1.cpp.o -MF CMakeFiles/moldraw2DTest1.dir/test1.cpp.o.d -o CMakeFiles/moldraw2DTest1.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/test1.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/test1.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 88%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Charge.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Charge.cpp.o -MF CMakeFiles/MolStandardize.dir/Charge.cpp.o.d -o CMakeFiles/MolStandardize.dir/Charge.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Charge.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Charge.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 88%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Tautomer.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Tautomer.cpp.o -MF CMakeFiles/MolStandardize.dir/Tautomer.cpp.o.d -o CMakeFiles/MolStandardize.dir/Tautomer.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Tautomer.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Tautomer.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 88%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Fragment.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Fragment.cpp.o -MF CMakeFiles/MolStandardize.dir/Fragment.cpp.o.d -o CMakeFiles/MolStandardize.dir/Fragment.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Fragment.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Fragment.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 88%] Linking CXX executable moldraw2DTest1 cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldraw2DTest1.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/moldraw2DTest1.dir/test1.cpp.o -o moldraw2DTest1 ../../../lib/libRDKitMolDraw2D.so.1.2023.03.2 ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libcairo.so /usr/lib64/libfreetype.so [ 88%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogEntry.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong 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/builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogParams.cpp.o -MF CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogParams.cpp.o.d -o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogParams.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogParams.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 88%] Built target moldraw2DTest1 /usr/bin/gmake -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTestCatch.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTestCatch.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTestCatch.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTestCatch.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTestCatch.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 88%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTestCatch.dir/catch_tests.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/usr/include/freetype2 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe 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cmake_link_script CMakeFiles/moldraw2DTestCatch.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/moldraw2DTestCatch.dir/catch_tests.cpp.o -o moldraw2DTestCatch ../../RDGeneral/librdkitCatch.so ../../../lib/libRDKitMolDraw2D.so.1.2023.03.2 ../../../lib/libRDKitCIPLabeler.so.1.2023.03.2 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../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 90%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogEntry.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code 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../../../lib/libRDKitFileParsers.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.81.0 gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 92%] Built target testFMCS /usr/bin/gmake -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 92%] Building CXX object Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Wrap && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdFMCS_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o -MF CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o.d -o CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Wrap/rdFMCS.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Wrap/rdFMCS.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 92%] Linking CXX shared module ../../../../rdkit/Chem/Draw/rdMolDraw2D.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolDraw2D.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/Draw/rdMolDraw2D.so CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o ../../../../lib/libRDKitMolDraw2D.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 /usr/lib64/libcairo.so /usr/lib64/libfreetype.so /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.81.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 92%] Linking CXX shared module ../../../../rdkit/Chem/rdFMCS.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdFMCS.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/rdFMCS.so CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o ../../../../lib/libRDKitFMCS.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.81.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl In member function '__ct ', inlined from 'dereference' at /usr/include/boost/python/stl_iterator.hpp:48:61, inlined from 'dereference' at /usr/include/boost/iterator/iterator_facade.hpp:631:32, inlined from 'operator*' at /usr/include/boost/iterator/iterator_facade.hpp:737:69, inlined from '_M_range_initialize' at /usr/include/c++/13/bits/stl_vector.h:1670:20, inlined from '__ct ' at /usr/include/c++/13/bits/stl_vector.h:708:23, inlined from 'pythonObjectToVect' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDBoost/Wrap.h:140:15: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/point.h:283:57: warning: 'MEM[(const struct Point2D &)&D.24885 + 24].x' may be used uninitialized [-Wmaybe-uninitialized] 283 | Point2D(const Point2D &other) : Point(other), x(other.x), y(other.y) {} | ^ /usr/include/boost/python/stl_iterator.hpp: In function 'pythonObjectToVect': /usr/include/boost/python/stl_iterator.hpp:48:16: note: '' declared here 48 | return extract(this->impl_.current().get())(); | ^ In member function '__ct ', inlined from 'dereference' at /usr/include/boost/python/stl_iterator.hpp:48:61, inlined from 'dereference' at /usr/include/boost/iterator/iterator_facade.hpp:631:32, inlined from 'operator*' at /usr/include/boost/iterator/iterator_facade.hpp:737:69, inlined from '_M_range_initialize' at /usr/include/c++/13/bits/stl_vector.h:1670:20, inlined from '__ct ' at /usr/include/c++/13/bits/stl_vector.h:708:23, inlined from 'pythonObjectToVect' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDBoost/Wrap.h:140:15: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/Geometry/point.h:283:69: warning: 'MEM[(const struct Point2D &)&D.24885 + 24].y' may be used uninitialized [-Wmaybe-uninitialized] 283 | Point2D(const Point2D &other) : Point(other), x(other.x), y(other.y) {} | ^ /usr/include/boost/python/stl_iterator.hpp: In function 'pythonObjectToVect': /usr/include/boost/python/stl_iterator.hpp:48:16: note: '' declared here 48 | return extract(this->impl_.current().get())(); | ^ In member function 'construct', inlined from 'construct' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from '_M_create_node' at /usr/include/c++/13/bits/stl_list.h:713:33, inlined from '_M_insert' at /usr/include/c++/13/bits/stl_list.h:2005:32, inlined from 'push_back' at /usr/include/c++/13/bits/stl_list.h:1306:24, inlined from 'push_dispatch' at /usr/include/boost/pending/container_traits.hpp:574:20, inlined from 'push' at /usr/include/boost/pending/container_traits.hpp:606:29, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:1073:29, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:2263:20, inlined from 'add_edge' at /usr/include/boost/graph/detail/adjacency_list.hpp:2271:20, inlined from 'addBond' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Graph.h:38:45, inlined from 'makeRingGraph.isra' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/RingMatchTableSet.h:231:16: /usr/include/c++/13/bits/new_allocator.h:187:11: warning: 'p' may be used uninitialized [-Wmaybe-uninitialized] 187 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^ /usr/include/boost/graph/detail/adjacency_list.hpp: In function 'makeRingGraph.isra': /usr/include/boost/graph/detail/adjacency_list.hpp:2270:41: note: 'p' was declared here 2270 | typename Config::edge_property_type p; | ^ gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 92%] Built target rdFMCS /usr/bin/gmake -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Test /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Test /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 92%] Building CXX object Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/testFMCS.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Test && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/testFMCS.cpp.o -MF CMakeFiles/FMCStest.dir/testFMCS.cpp.o.d -o CMakeFiles/FMCStest.dir/testFMCS.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Test/testFMCS.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Test/testFMCS.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 92%] Built target rdMolDraw2D /usr/bin/gmake -f Code/GraphMol/MolHash/CMakeFiles/molHashCatchTest.dir/build.make Code/GraphMol/MolHash/CMakeFiles/molHashCatchTest.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolHash/CMakeFiles/molHashCatchTest.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/MolHash/CMakeFiles/molHashCatchTest.dir/build.make Code/GraphMol/MolHash/CMakeFiles/molHashCatchTest.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 92%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/molHashCatchTest.dir/catch_tests.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolHash && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/MolHash/CMakeFiles/molHashCatchTest.dir/catch_tests.cpp.o -MF CMakeFiles/molHashCatchTest.dir/catch_tests.cpp.o.d -o CMakeFiles/molHashCatchTest.dir/catch_tests.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolHash/catch_tests.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolHash/catch_tests.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 92%] Linking CXX executable FMCStest cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Test && /usr/bin/cmake -E cmake_link_script CMakeFiles/FMCStest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/FMCStest.dir/testFMCS.cpp.o -o FMCStest ../../../../lib/libRDKitFMCS.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.81.0 gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 92%] Built target FMCStest /usr/bin/gmake -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolHash/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolHash/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f 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CMakeFiles/molHashCatchTest.dir/catch_tests.cpp.o -o molHashCatchTest ../../RDGeneral/librdkitCatch.so ../../../lib/libRDKitMolHash.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl 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gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 92%] Building CXX object Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MMPA && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/RGroupDecomposition && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 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../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.81.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 93%] Built target rdDeprotect /usr/bin/gmake -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecompInternals.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecompInternals.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2023_03_2 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gaExample ../../../lib/libRDKitRGroupDecomposition.so.1.2023.03.2 /usr/lib64/libboost_program_options.so.1.81.0 ../../../lib/libRDKitFMCS.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl ../../../lib/libRDKitga.so.1.2023.03.2 gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 93%] Built target gaExample /usr/bin/gmake -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 93%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/test1.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/test1.cpp.o -MF CMakeFiles/molStandardizeTest.dir/test1.cpp.o.d -o CMakeFiles/molStandardizeTest.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/test1.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/test1.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 93%] Linking CXX shared module ../../../../rdkit/Chem/rdRGroupDecomposition.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/RGroupDecomposition/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdRGroupDecomposition.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/rdRGroupDecomposition.so CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o ../../../../lib/libRDKitRGroupDecomposition.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitFMCS.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../../lib/libRDKitga.so.1.2023.03.2 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.81.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl In member function '__ct ', inlined from 'dereference' at /usr/include/boost/python/stl_iterator.hpp:48:61, inlined from 'dereference' at /usr/include/boost/iterator/iterator_facade.hpp:631:32, inlined from 'operator*' at /usr/include/boost/iterator/iterator_facade.hpp:737:69, inlined from '__ct_base ' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/RGroupDecomposition/Wrap/rdRGroupComposition.cpp:73:28: /usr/include/boost/smart_ptr/shared_ptr.hpp:458:66: warning: 'MEM[(const struct shared_ptr &)&D.20339 + 24].px' may be used uninitialized [-Wmaybe-uninitialized] 458 | shared_ptr( shared_ptr const & r ) BOOST_SP_NOEXCEPT : px( r.px ), pn( r.pn ) | ^ /usr/include/boost/python/stl_iterator.hpp: In member function '__ct_base ': /usr/include/boost/python/stl_iterator.hpp:48:16: note: '' declared here 48 | return extract(this->impl_.current().get())(); | ^ In member function '__ct ', inlined from 'dereference' at /usr/include/boost/python/stl_iterator.hpp:48:61, inlined from 'dereference' at /usr/include/boost/iterator/iterator_facade.hpp:631:32, inlined from 'operator*' at /usr/include/boost/iterator/iterator_facade.hpp:737:69, inlined from '__ct_base ' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/RGroupDecomposition/Wrap/rdRGroupComposition.cpp:70:14: /usr/include/boost/smart_ptr/shared_ptr.hpp:458:66: warning: 'MEM[(const struct shared_ptr &)&D.20131 + 24].px' may be used uninitialized [-Wmaybe-uninitialized] 458 | shared_ptr( shared_ptr const & r ) BOOST_SP_NOEXCEPT : px( r.px ), pn( r.pn ) | ^ /usr/include/boost/python/stl_iterator.hpp: In member function '__ct_base ': /usr/include/boost/python/stl_iterator.hpp:48:16: note: '' declared here 48 | return extract(this->impl_.current().get())(); | ^ In member function '__ct ', inlined from 'dereference' at /usr/include/boost/python/stl_iterator.hpp:48:61, inlined from 'dereference' at /usr/include/boost/iterator/iterator_facade.hpp:631:32, inlined from 'operator*' at /usr/include/boost/iterator/iterator_facade.hpp:737:69, inlined from 'RGroupDecomp' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/RGroupDecomposition/Wrap/rdRGroupComposition.cpp:156:22: /usr/include/boost/smart_ptr/shared_ptr.hpp:458:66: warning: 'MEM[(const struct shared_ptr &)&D.41937 + 24].px' may be used uninitialized [-Wmaybe-uninitialized] 458 | shared_ptr( shared_ptr const & r ) BOOST_SP_NOEXCEPT : px( r.px ), pn( r.pn ) | ^ /usr/include/boost/python/stl_iterator.hpp: In function 'RGroupDecomp': /usr/include/boost/python/stl_iterator.hpp:48:16: note: '' declared here 48 | return extract(this->impl_.current().get())(); | ^ In member function '__ct ', inlined from 'dereference' at /usr/include/boost/python/stl_iterator.hpp:48:61, inlined from 'dereference' at /usr/include/boost/iterator/iterator_facade.hpp:631:32, inlined from 'operator*' at /usr/include/boost/iterator/iterator_facade.hpp:737:69, inlined from 'RGroupDecomp' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/RGroupDecomposition/Wrap/rdRGroupComposition.cpp:153:10: /usr/include/boost/smart_ptr/shared_ptr.hpp:458:66: warning: 'MEM[(const struct shared_ptr &)&D.41827 + 24].px' may be used uninitialized [-Wmaybe-uninitialized] 458 | shared_ptr( shared_ptr const & r ) BOOST_SP_NOEXCEPT : px( r.px ), pn( r.pn ) | ^ /usr/include/boost/python/stl_iterator.hpp: In function 'RGroupDecomp': /usr/include/boost/python/stl_iterator.hpp:48:16: note: '' declared here 48 | return extract(this->impl_.current().get())(); | ^ [ 93%] Linking CXX executable molStandardizeTest cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molStandardizeTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/molStandardizeTest.dir/test1.cpp.o -o molStandardizeTest ../../../lib/libRDKitMolStandardize.so.1.2023.03.2 ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 93%] Built target rdRGroupDecomposition /usr/bin/gmake -f Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 94%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/testNormalize.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/testNormalize.cpp.o -MF CMakeFiles/molNormalizeTest.dir/testNormalize.cpp.o.d -o CMakeFiles/molNormalizeTest.dir/testNormalize.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/testNormalize.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/testNormalize.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 94%] Built target molStandardizeTest /usr/bin/gmake -f Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 94%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/testValidate.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/testValidate.cpp.o -MF CMakeFiles/molValidateTest.dir/testValidate.cpp.o.d -o CMakeFiles/molValidateTest.dir/testValidate.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/testValidate.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/testValidate.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 94%] Linking CXX executable molNormalizeTest cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molNormalizeTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/molNormalizeTest.dir/testNormalize.cpp.o -o molNormalizeTest ../../../lib/libRDKitMolStandardize.so.1.2023.03.2 ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 94%] Linking CXX executable molValidateTest cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molValidateTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/molValidateTest.dir/testValidate.cpp.o -o molValidateTest ../../../lib/libRDKitMolStandardize.so.1.2023.03.2 ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 94%] Built target molNormalizeTest /usr/bin/gmake -f Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 94%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/testCharge.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/testCharge.cpp.o -MF CMakeFiles/molChargeTest.dir/testCharge.cpp.o.d -o CMakeFiles/molChargeTest.dir/testCharge.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/testCharge.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/testCharge.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 94%] Built target molValidateTest /usr/bin/gmake -f Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 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Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/testTautomer.cpp.o -MF CMakeFiles/molTautomerTest.dir/testTautomer.cpp.o.d -o CMakeFiles/molTautomerTest.dir/testTautomer.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/testTautomer.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/testTautomer.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 94%] Linking CXX executable molChargeTest cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molChargeTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/molChargeTest.dir/testCharge.cpp.o -o molChargeTest ../../../lib/libRDKitMolStandardize.so.1.2023.03.2 ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 94%] Built target molChargeTest /usr/bin/gmake -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd 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/usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/test2.cpp.o -MF CMakeFiles/molStandardizeSmallTest.dir/test2.cpp.o.d -o CMakeFiles/molStandardizeSmallTest.dir/test2.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/test2.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/test2.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 94%] Linking CXX executable molStandardizeSmallTest cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molStandardizeSmallTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/molStandardizeSmallTest.dir/test2.cpp.o -o molStandardizeSmallTest ../../../lib/libRDKitMolStandardize.so.1.2023.03.2 ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 94%] Built target molStandardizeSmallTest /usr/bin/gmake -f Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 94%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/testFragment.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 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--verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/molTautomerTest.dir/testTautomer.cpp.o -o molTautomerTest ../../../lib/libRDKitMolStandardize.so.1.2023.03.2 ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 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../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 95%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Charge.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Wrap && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION 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/builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Wrap/Charge.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Wrap/Charge.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 95%] Built target molStandardizeCatchTest /usr/bin/gmake -f Code/GraphMol/ScaffoldNetwork/CMakeFiles/ScaffoldNetwork.dir/build.make Code/GraphMol/ScaffoldNetwork/CMakeFiles/ScaffoldNetwork.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ScaffoldNetwork /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ScaffoldNetwork 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-DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DScaffoldNetwork_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/ScaffoldNetwork/CMakeFiles/ScaffoldNetwork.dir/ScaffoldNetwork.cpp.o -MF CMakeFiles/ScaffoldNetwork.dir/ScaffoldNetwork.cpp.o.d -o CMakeFiles/ScaffoldNetwork.dir/ScaffoldNetwork.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ScaffoldNetwork/ScaffoldNetwork.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ScaffoldNetwork/ScaffoldNetwork.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 95%] Linking CXX shared library ../../../lib/libRDKitScaffoldNetwork.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ScaffoldNetwork && /usr/bin/cmake -E cmake_link_script CMakeFiles/ScaffoldNetwork.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitScaffoldNetwork.so.1 -o ../../../lib/libRDKitScaffoldNetwork.so.1.2023.03.2 CMakeFiles/ScaffoldNetwork.dir/ScaffoldNetwork.cpp.o ../../../lib/libRDKitMolStandardize.so.1.2023.03.2 ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 95%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Wrap && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK 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-Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o -MF CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o.d -o CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Wrap/Fragment.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Wrap/Fragment.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ScaffoldNetwork && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitScaffoldNetwork.so.1.2023.03.2 ../../../lib/libRDKitScaffoldNetwork.so.1 ../../../lib/libRDKitScaffoldNetwork.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 95%] Built target ScaffoldNetwork /usr/bin/gmake -f Code/GraphMol/MolEnumerator/CMakeFiles/testMolEnumerator.dir/build.make 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Code/GraphMol/MolEnumerator/CMakeFiles/testMolEnumerator.dir/enumerator_catch.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolEnumerator && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/MolEnumerator/CMakeFiles/testMolEnumerator.dir/enumerator_catch.cpp.o -MF CMakeFiles/testMolEnumerator.dir/enumerator_catch.cpp.o.d -o CMakeFiles/testMolEnumerator.dir/enumerator_catch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolEnumerator/enumerator_catch.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolEnumerator/enumerator_catch.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 95%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Normalize.cpp.o cd 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../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 96%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Metal.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Wrap && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Metal.cpp.o -MF CMakeFiles/rdMolStandardize.dir/Metal.cpp.o.d -o CMakeFiles/rdMolStandardize.dir/Metal.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Wrap/Metal.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Wrap/Metal.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 96%] Built target testMolEnumerator /usr/bin/gmake -f Code/GraphMol/MolEnumerator/Wrap/CMakeFiles/rdMolEnumerator.dir/build.make Code/GraphMol/MolEnumerator/Wrap/CMakeFiles/rdMolEnumerator.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolEnumerator/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolEnumerator/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolEnumerator/Wrap/CMakeFiles/rdMolEnumerator.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/MolEnumerator/Wrap/CMakeFiles/rdMolEnumerator.dir/build.make Code/GraphMol/MolEnumerator/Wrap/CMakeFiles/rdMolEnumerator.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 96%] Building CXX object Code/GraphMol/MolEnumerator/Wrap/CMakeFiles/rdMolEnumerator.dir/rdMolEnumerator.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolEnumerator/Wrap && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolEnumerator_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolEnumerator/Wrap/CMakeFiles/rdMolEnumerator.dir/rdMolEnumerator.cpp.o -MF CMakeFiles/rdMolEnumerator.dir/rdMolEnumerator.cpp.o.d -o CMakeFiles/rdMolEnumerator.dir/rdMolEnumerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolEnumerator/Wrap/rdMolEnumerator.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolEnumerator/Wrap/rdMolEnumerator.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 96%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Tautomer.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Wrap && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Tautomer.cpp.o -MF CMakeFiles/rdMolStandardize.dir/Tautomer.cpp.o.d -o CMakeFiles/rdMolStandardize.dir/Tautomer.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Wrap/Tautomer.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Wrap/Tautomer.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 97%] Linking CXX shared module ../../../../rdkit/Chem/rdMolEnumerator.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolEnumerator/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolEnumerator.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/rdMolEnumerator.so CMakeFiles/rdMolEnumerator.dir/rdMolEnumerator.cpp.o ../../../../lib/libRDKitMolEnumerator.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so ../../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.81.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 97%] Built target rdMolEnumerator /usr/bin/gmake -f Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/build.make Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/build.make Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 98%] Building CXX object Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/TautomerQuery.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_TAUTOMERQUERY_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DTautomerQuery_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/TautomerQuery.cpp.o -MF CMakeFiles/TautomerQuery.dir/TautomerQuery.cpp.o.d -o CMakeFiles/TautomerQuery.dir/TautomerQuery.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery/TautomerQuery.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery/TautomerQuery.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 98%] Linking CXX shared module ../../../../rdkit/Chem/MolStandardize/rdMolStandardize.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolStandardize.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/MolStandardize/rdMolStandardize.so CMakeFiles/rdMolStandardize.dir/rdMolStandardize.cpp.o CMakeFiles/rdMolStandardize.dir/Validate.cpp.o CMakeFiles/rdMolStandardize.dir/Charge.cpp.o CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o CMakeFiles/rdMolStandardize.dir/Normalize.cpp.o CMakeFiles/rdMolStandardize.dir/Metal.cpp.o CMakeFiles/rdMolStandardize.dir/Tautomer.cpp.o ../../../../lib/libRDKitMolStandardize.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so ../../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.81.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl [ 98%] Linking CXX shared library ../../../lib/libRDKitTautomerQuery.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery && /usr/bin/cmake -E cmake_link_script CMakeFiles/TautomerQuery.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitTautomerQuery.so.1 -o ../../../lib/libRDKitTautomerQuery.so.1.2023.03.2 CMakeFiles/TautomerQuery.dir/TautomerQuery.cpp.o ../../../lib/libRDKitMolStandardize.so.1.2023.03.2 ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitTautomerQuery.so.1.2023.03.2 ../../../lib/libRDKitTautomerQuery.so.1 ../../../lib/libRDKitTautomerQuery.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 98%] Built target TautomerQuery /usr/bin/gmake -f Code/GraphMol/ScaffoldNetwork/CMakeFiles/testScaffoldNetwork.dir/build.make Code/GraphMol/ScaffoldNetwork/CMakeFiles/testScaffoldNetwork.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ScaffoldNetwork /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ScaffoldNetwork /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ScaffoldNetwork/CMakeFiles/testScaffoldNetwork.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/ScaffoldNetwork/CMakeFiles/testScaffoldNetwork.dir/build.make Code/GraphMol/ScaffoldNetwork/CMakeFiles/testScaffoldNetwork.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 98%] Building CXX object Code/GraphMol/ScaffoldNetwork/CMakeFiles/testScaffoldNetwork.dir/catch_tests.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ScaffoldNetwork && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/ScaffoldNetwork/CMakeFiles/testScaffoldNetwork.dir/catch_tests.cpp.o -MF CMakeFiles/testScaffoldNetwork.dir/catch_tests.cpp.o.d -o CMakeFiles/testScaffoldNetwork.dir/catch_tests.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ScaffoldNetwork/catch_tests.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ScaffoldNetwork/catch_tests.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 98%] Built target rdMolStandardize /usr/bin/gmake -f Code/GraphMol/ScaffoldNetwork/Wrap/CMakeFiles/rdScaffoldNetwork.dir/build.make Code/GraphMol/ScaffoldNetwork/Wrap/CMakeFiles/rdScaffoldNetwork.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ScaffoldNetwork/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ScaffoldNetwork/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ScaffoldNetwork/Wrap/CMakeFiles/rdScaffoldNetwork.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/ScaffoldNetwork/Wrap/CMakeFiles/rdScaffoldNetwork.dir/build.make Code/GraphMol/ScaffoldNetwork/Wrap/CMakeFiles/rdScaffoldNetwork.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 98%] Building CXX object Code/GraphMol/ScaffoldNetwork/Wrap/CMakeFiles/rdScaffoldNetwork.dir/rdScaffoldNetwork.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ScaffoldNetwork/Wrap && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdScaffoldNetwork_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto 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../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 98%] Built target testScaffoldNetwork /usr/bin/gmake -f Code/GraphMol/TautomerQuery/CMakeFiles/tautomerQueryTestCatch.dir/build.make Code/GraphMol/TautomerQuery/CMakeFiles/tautomerQueryTestCatch.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery 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CMakeFiles/tautomerQueryTestCatch.dir/catch_tests.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery/catch_tests.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery/catch_tests.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 98%] Linking CXX shared module ../../../../rdkit/Chem/Scaffolds/rdScaffoldNetwork.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/ScaffoldNetwork/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdScaffoldNetwork.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/Scaffolds/rdScaffoldNetwork.so CMakeFiles/rdScaffoldNetwork.dir/rdScaffoldNetwork.cpp.o ../../../../lib/libRDKitScaffoldNetwork.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitMolStandardize.so.1.2023.03.2 ../../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.81.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl In member function '__ct ', inlined from 'dereference' at /usr/include/boost/python/stl_iterator.hpp:48:61, inlined from 'dereference' at /usr/include/boost/iterator/iterator_facade.hpp:631:32, inlined from 'operator*' at /usr/include/boost/iterator/iterator_facade.hpp:737:69, inlined from '_M_range_initialize' at /usr/include/c++/13/bits/stl_vector.h:1670:20, inlined from '__ct ' at /usr/include/c++/13/bits/stl_vector.h:708:23, inlined from 'pythonObjectToVect' at /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/RDBoost/Wrap.h:140:15: /usr/include/boost/smart_ptr/shared_ptr.hpp:458:66: warning: 'MEM[(const struct shared_ptr &)&D.12759 + 24].px' may be used uninitialized [-Wmaybe-uninitialized] 458 | shared_ptr( shared_ptr const & r ) BOOST_SP_NOEXCEPT : px( r.px ), pn( r.pn ) | ^ /usr/include/boost/python/stl_iterator.hpp: In function 'pythonObjectToVect': /usr/include/boost/python/stl_iterator.hpp:48:16: note: '' declared here 48 | return extract(this->impl_.current().get())(); | ^ gmake[2]: Leaving directory 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-I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/rdTautomerQuery.cpp.o -MF CMakeFiles/rdTautomerQuery.dir/rdTautomerQuery.cpp.o.d -o CMakeFiles/rdTautomerQuery.dir/rdTautomerQuery.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery/Wrap/rdTautomerQuery.cpp annobin: 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../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.81.0 gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 98%] Built target tautomerQueryTestCatch /usr/bin/gmake -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 98%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTLIBRARY_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructLibrary_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o -MF CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o.d -o CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/SubstructLibrary.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/SubstructLibrary.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 99%] Linking CXX shared module ../../../../rdkit/Chem/rdTautomerQuery.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdTautomerQuery.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/rdTautomerQuery.so CMakeFiles/rdTautomerQuery.dir/rdTautomerQuery.cpp.o ../../../../lib/libRDKitTautomerQuery.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitMolStandardize.so.1.2023.03.2 ../../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so ../../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.81.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 99%] Built target rdTautomerQuery [ 99%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/PatternFactory.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTLIBRARY_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructLibrary_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/PatternFactory.cpp.o -MF CMakeFiles/SubstructLibrary.dir/PatternFactory.cpp.o.d -o CMakeFiles/SubstructLibrary.dir/PatternFactory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/PatternFactory.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/PatternFactory.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [ 99%] Linking CXX shared library ../../../lib/libRDKitSubstructLibrary.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_link_script CMakeFiles/SubstructLibrary.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libRDKitSubstructLibrary.so.1 -o ../../../lib/libRDKitSubstructLibrary.so.1.2023.03.2 CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o CMakeFiles/SubstructLibrary.dir/PatternFactory.cpp.o ../../../lib/libRDKitTautomerQuery.so.1.2023.03.2 ../../../lib/libRDKitMolStandardize.so.1.2023.03.2 ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.81.0 cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubstructLibrary.so.1.2023.03.2 ../../../lib/libRDKitSubstructLibrary.so.1 ../../../lib/libRDKitSubstructLibrary.so gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 99%] Built target SubstructLibrary /usr/bin/gmake -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/depend /usr/bin/gmake -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryCatchTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryCatchTest.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryCatchTest.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryCatchTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryCatchTest.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [ 99%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryCatchTest.dir/catch_tests.cpp.o [ 99%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o -MF CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o.d -o CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/substructLibraryTest.cpp cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/catch2 -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryCatchTest.dir/catch_tests.cpp.o -MF CMakeFiles/substructLibraryCatchTest.dir/catch_tests.cpp.o.d -o CMakeFiles/substructLibraryCatchTest.dir/catch_tests.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/catch_tests.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/catch_tests.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/substructLibraryTest.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [100%] Linking CXX executable substructLibraryCatchTest cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_link_script CMakeFiles/substructLibraryCatchTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/substructLibraryCatchTest.dir/catch_tests.cpp.o -o substructLibraryCatchTest ../../RDGeneral/librdkitCatch.so ../../../lib/libRDKitSubstructLibrary.so.1.2023.03.2 ../../../lib/libRDKitTautomerQuery.so.1.2023.03.2 ../../../lib/libRDKitMolStandardize.so.1.2023.03.2 ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/lib64/libboost_serialization.so.1.81.0 [100%] Linking CXX executable substructLibraryTest cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_link_script CMakeFiles/substructLibraryTest.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o -o substructLibraryTest ../../../lib/libRDKitSubstructLibrary.so.1.2023.03.2 ../../../lib/libRDKitTautomerQuery.so.1.2023.03.2 ../../../lib/libRDKitMolStandardize.so.1.2023.03.2 ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [100%] Built target substructLibraryCatchTest /usr/bin/gmake -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' cd /builddir/build/BUILD/rdkit-Release_2023_03_2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2 /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/Wrap /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/gmake -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [100%] Building CXX object Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSubstructLibrary_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o -MF CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o.d -o CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/Wrap/rdSubstructLibrary.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/Wrap/rdSubstructLibrary.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [100%] Built target substructLibraryTest [100%] Building CXX object Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSubstructLibrary_EXPORTS -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External -I/usr/include/inchi -I/usr/include/python3.11 -I/builddir/build/BUILD/rdkit-Release_2023_03_2/Code -I/builddir/build/BUILD/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -std=gnu++17 -fPIC -MD -MT Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o -MF CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o.d -o CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o -c /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/Wrap/SubstructLibraryWrap.cpp annobin: /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/Wrap/SubstructLibraryWrap.cpp: Warning: -D_GLIBCXX_ASSERTIONS not defined [100%] Linking CXX shared module ../../../../rdkit/Chem/rdSubstructLibrary.so cd /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSubstructLibrary.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../../../rdkit/Chem/rdSubstructLibrary.so CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o ../../../../lib/libRDKitSubstructLibrary.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitTautomerQuery.so.1.2023.03.2 ../../../../lib/libRDKitMolStandardize.so.1.2023.03.2 ../../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 /usr/lib64/libmaeparser.so /usr/lib64/libboost_system.so.1.81.0 /usr/lib64/libboost_iostreams.so.1.81.0 /usr/lib64/libz.so ../../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/lib64/libboost_serialization.so.1.81.0 /usr/lib64/libpython3.11.so /usr/lib64/libboost_python311.so.1.81.0 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' [100%] Built target rdSubstructLibrary gmake[1]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2023_03_2' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/rdkit-Release_2023_03_2/CMakeFiles 0 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.ZippoI + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64 ++ dirname /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd rdkit-Release_2023_03_2 + DESTDIR=/builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64 + /usr/bin/cmake --install . -- Install configuration: "Release" -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11/site-packages/rdkit -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11/site-packages/rdkit/rdBase.so -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11/site-packages/rdkit/CTestTestfile.cmake -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11/site-packages/rdkit/cmake_install.cmake -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11/site-packages/rdkit/Makefile -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11/site-packages/rdkit/RDPaths.py -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11/site-packages/rdkit/utils -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11/site-packages/rdkit/utils/spiral.py -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11/site-packages/rdkit/utils/retest.txt -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11/site-packages/rdkit/utils/listutils.py -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11/site-packages/rdkit/utils/fileutils.py -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11/site-packages/rdkit/utils/comhack.py -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11/site-packages/rdkit/utils/chemutils.py -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11/site-packages/rdkit/utils/chemdraw_qax.py -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11/site-packages/rdkit/utils/chemdraw.py -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11/site-packages/rdkit/utils/cactvs.py -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11/site-packages/rdkit/utils/__init__.py -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11/site-packages/rdkit/sping -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11/site-packages/rdkit/sping/utils.py -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11/site-packages/rdkit/sping/util -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11/site-packages/rdkit/sping/util/__init__.py -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11/site-packages/rdkit/sping/util/HTMLPiddler.py -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11/site-packages/rdkit/sping/tests -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11/site-packages/rdkit/sping/tests/testallps.py -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11/site-packages/rdkit/sping/tests/pstests.py -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11/site-packages/rdkit/sping/tests/pidtest.py -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11/site-packages/rdkit/sping/tests/__init__.py -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11/site-packages/rdkit/sping/stringformat.py -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11/site-packages/rdkit/sping/pid.py -- Installing: 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/builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/include/rdkit/GraphMol/RGroupDecomposition/RGroupDecompParams.h -- Up-to-date: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/rdRGroupDecomposition.so -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/libRDKitSLNParse.so.1.2023.03.2 -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/libRDKitSLNParse.so.1 -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/libRDKitSLNParse.so -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/include/rdkit/GraphMol/SLNParse/SLNAttribs.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/include/rdkit/GraphMol/SLNParse/SLNParse.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/include/rdkit/GraphMol/SLNParse/SLNParseOps.h -- Up-to-date: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/rdSLNParse.so -- Up-to-date: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/rdchem.so -- Up-to-date: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/rdmolops.so -- Up-to-date: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/rdqueries.so -- Up-to-date: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/rdmolfiles.so -- Up-to-date: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/rdtrajectory.so -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/libRDKitMolStandardize.so.1.2023.03.2 -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/libRDKitMolStandardize.so.1 -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/libRDKitMolStandardize.so -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/include/rdkit/GraphMol/MolStandardize/MolStandardize.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/include/rdkit/GraphMol/MolStandardize/Metal.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/include/rdkit/GraphMol/MolStandardize/Normalize.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/include/rdkit/GraphMol/MolStandardize/Validate.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/include/rdkit/GraphMol/MolStandardize/Charge.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/include/rdkit/GraphMol/MolStandardize/Tautomer.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/include/rdkit/GraphMol/MolStandardize/Fragment.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/include/rdkit/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogEntry.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/include/rdkit/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogParams.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/include/rdkit/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogUtils.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/include/rdkit/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogEntry.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/include/rdkit/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogParams.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/include/rdkit/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogUtils.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/include/rdkit/GraphMol/MolStandardize/TransformCatalog/TransformCatalogEntry.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/include/rdkit/GraphMol/MolStandardize/TransformCatalog/TransformCatalogParams.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/include/rdkit/GraphMol/MolStandardize/TransformCatalog/TransformCatalogUtils.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/include/rdkit/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogEntry.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/include/rdkit/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogParams.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/include/rdkit/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogUtils.h -- Up-to-date: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/MolStandardize/rdMolStandardize.so -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/libRDKitScaffoldNetwork.so.1.2023.03.2 -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/libRDKitScaffoldNetwork.so.1 -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/libRDKitScaffoldNetwork.so -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/include/rdkit/GraphMol/ScaffoldNetwork/ScaffoldNetwork.h -- Up-to-date: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/Scaffolds/rdScaffoldNetwork.so -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/libRDKitMolEnumerator.so.1.2023.03.2 -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/libRDKitMolEnumerator.so.1 -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/libRDKitMolEnumerator.so -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/include/rdkit/GraphMol/MolEnumerator/MolEnumerator.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/include/rdkit/GraphMol/MolEnumerator/LinkNode.h -- Up-to-date: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/rdMolEnumerator.so -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/libRDKitAbbreviations.so.1.2023.03.2 -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/libRDKitAbbreviations.so.1 -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/libRDKitAbbreviations.so -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/include/rdkit/GraphMol/Abbreviations/Abbreviations.h -- Up-to-date: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/rdAbbreviations.so -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/include/rdkit/Query/AndQuery.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/include/rdkit/Query/EqualityQuery.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/include/rdkit/Query/GreaterEqualQuery.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/include/rdkit/Query/GreaterQuery.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/include/rdkit/Query/LessEqualQuery.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/include/rdkit/Query/LessQuery.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/include/rdkit/Query/NullQueryAlgebra.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/include/rdkit/Query/OrQuery.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/include/rdkit/Query/Query.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/include/rdkit/Query/QueryObjects.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/include/rdkit/Query/RangeQuery.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/include/rdkit/Query/SetQuery.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/include/rdkit/Query/XOrQuery.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/include/rdkit/Features/Feature.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/include/rdkit/DataManip/MetricMatrixCalc/MetricFuncs.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/include/rdkit/DataManip/MetricMatrixCalc/MetricMatrixCalc.h -- Up-to-date: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11/site-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.so -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/libRDKitSimDivPickers.so.1.2023.03.2 -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/libRDKitSimDivPickers.so.1 -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/libRDKitSimDivPickers.so -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/include/rdkit/SimDivPickers/DistPicker.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/include/rdkit/SimDivPickers/LeaderPicker.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/include/rdkit/SimDivPickers/HierarchicalClusterPicker.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/include/rdkit/SimDivPickers/MaxMinPicker.h -- Up-to-date: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11/site-packages/rdkit/SimDivFilters/rdSimDivPickers.so -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/libRDKithc.so.1.2023.03.2 -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/libRDKithc.so.1 -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/libRDKithc.so -- Up-to-date: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11/site-packages/rdkit/ML/Cluster/Clustering.so -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/libRDKitInfoTheory.so.1.2023.03.2 -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/libRDKitInfoTheory.so.1 -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/libRDKitInfoTheory.so -- Up-to-date: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11/site-packages/rdkit/ML/InfoTheory/rdInfoTheory.so -- Up-to-date: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11/site-packages/rdkit/ML/Data/cQuantize.so -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/libRDKitChemicalFeatures.so.1.2023.03.2 -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/libRDKitChemicalFeatures.so.1 -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/libRDKitChemicalFeatures.so -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/include/rdkit/ChemicalFeatures/ChemicalFeature.h -- Installing: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/include/rdkit/ChemicalFeatures/FreeChemicalFeature.h -- Up-to-date: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/rdChemicalFeatures.so ===================================================================== PostgreSQL cartridge installation succeeded. ===================================================================== Restart the PostgreSQL service before using the PostgreSQL RDKit cartridge. ===================================================================== -- Up-to-date: /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11/site-packages/rdkit/RDPaths.py + mkdir -p /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/share/pgsql/extension + install -pm 644 Code/PgSQL/rdkit/rdkit--4.3.0.sql /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/share/pgsql/extension/ + install -pm 644 Code/PgSQL/rdkit/rdkit.control /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/share/pgsql/extension/ + install -pm 644 Code/PgSQL/rdkit/update_sql/rdkit--3.8--4.0.sql Code/PgSQL/rdkit/update_sql/rdkit--4.0--4.0.1.sql Code/PgSQL/rdkit/update_sql/rdkit--4.0.1--4.1.sql Code/PgSQL/rdkit/update_sql/rdkit--4.1--4.1.1.sql Code/PgSQL/rdkit/update_sql/rdkit--4.1.1--4.2.sql Code/PgSQL/rdkit/update_sql/rdkit--4.2--4.3.0.sql /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/share/pgsql/extension/ + install -Dpm 755 Code/PgSQL/rdkit/librdkit.so /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/pgsql/rdkit.so + chrpath -d /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/pgsql/rdkit.so + rm -r /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/share/RDKit + FMCS=/builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/fmcs/fmcs + sed '1{\@^#!/usr/bin/python3@d}' /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/fmcs/fmcs.py + touch -r /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/fmcs/fmcs.py /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/fmcs/fmcs.new + mv /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/fmcs/fmcs.new /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/fmcs/fmcs.py + rm /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11/site-packages/rdkit/Chem/fmcs/fmcs + install -pm 755 Code/RDGeneral/librdkitCatch.so /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/librdkitCatch.so.1.2023.03.2 + install -pm 755 Code/RDGeneral/librdkitCatch.so /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/librdkitCatch.so.1 + install -pm 755 Code/RDGeneral/librdkitCatch.so /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/librdkitCatch.so + pushd /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64 ~/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64 ~/build/BUILD/rdkit-Release_2023_03_2 + ln -fs librdkitCatch.so.1.2023.03.2 librdkitCatch.so + ln -fs librdkitCatch.so.1.2023.03.2 librdkitCatch.so.1 + popd ~/build/BUILD/rdkit-Release_2023_03_2 + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 2023.03.2-1.fc39 --unique-debug-suffix -2023.03.2-1.fc39.x86_64 --unique-debug-src-base rdkit-2023.03.2-1.fc39.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/rdkit-Release_2023_03_2 find-debuginfo: starting Extracting debug info from 105 files /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal DWARF-compressing 105 files sepdebugcrcfix: Updated 105 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/rdkit-2023.03.2-1.fc39.x86_64 cpio: Code/GraphMol/SmilesParse/C:/Users/glandrum/RDKit_git/Code/GraphMol/SmilesParse/smiles.tab.hpp: Cannot stat: No such file or directory 21036 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs *** WARNING: ./usr/src/debug/rdkit-2023.03.2-1.fc39.x86_64/Code/GraphMol/MolDraw2D/DrawMol.h is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/rdkit-2023.03.2-1.fc39.x86_64/Code/GraphMol/MolDraw2D/DrawMol.cpp is executable but has no shebang, removing executable bit + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib/debug/usr/lib64/python3.11 using python3.11 Bytecompiling .py files below /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11 using python3.11 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.LfsS5t + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd rdkit-Release_2023_03_2 + export LD_LIBRARY_PATH=/builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64 + LD_LIBRARY_PATH=/builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64 + export PYTHONPATH=/builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11/site-packages + PYTHONPATH=/builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/lib64/python3.11/site-packages + export RDBASE=/builddir/build/BUILD/rdkit-Release_2023_03_2 + RDBASE=/builddir/build/BUILD/rdkit-Release_2023_03_2 + /usr/bin/ctest --test-dir . --output-on-failure --force-new-ctest-process -j2 -- -E 'pythonTestDirChem|pythonTestDirDBase|testPgSQL' Test project /builddir/build/BUILD/rdkit-Release_2023_03_2 Start 1: testInchi Start 2: testDict 1/198 Test #2: testDict ............................... Passed 3.01 sec Start 3: testRDValue 2/198 Test #3: testRDValue ............................ Passed 0.01 sec Start 4: testConcurrentQueue 3/198 Test #1: testInchi .............................. Passed 16.65 sec Start 5: dictTestsCatch 4/198 Test #5: dictTestsCatch ......................... Passed 0.00 sec Start 6: logTestsCatch 5/198 Test #6: logTestsCatch .......................... Passed 0.00 sec Start 7: testDataStructs 6/198 Test #7: testDataStructs ........................ Passed 0.01 sec Start 8: testFPB 7/198 Test #8: testFPB ................................ Passed 0.01 sec Start 9: testMultiFPB 8/198 Test #9: testMultiFPB ........................... Passed 0.01 sec Start 10: pyBV 9/198 Test #10: pyBV ................................... Passed 2.92 sec Start 11: pyDiscreteValueVect 10/198 Test #11: pyDiscreteValueVect .................... Passed 0.18 sec Start 12: pySparseIntVect 11/198 Test #12: pySparseIntVect ........................ Passed 0.18 sec Start 13: pyFPB 12/198 Test #13: pyFPB .................................. Passed 0.18 sec Start 14: testTransforms 13/198 Test #14: testTransforms ......................... Passed 0.01 sec Start 15: testGrid 14/198 Test #15: testGrid ............................... Passed 0.02 sec Start 16: geometryTestsCatch 15/198 Test #16: geometryTestsCatch ..................... Passed 0.01 sec Start 17: testPyGeometry 16/198 Test #17: testPyGeometry ......................... Passed 0.19 sec Start 18: testMatrices 17/198 Test #18: testMatrices ........................... Passed 0.00 sec Start 19: testConrec 18/198 Test #19: testConrec ............................. Passed 0.02 sec Start 20: testAlignment 19/198 Test #20: testAlignment .......................... Passed 0.01 sec Start 21: pyAlignment 20/198 Test #21: pyAlignment ............................ Passed 0.18 sec Start 22: testOptimizer 21/198 Test #22: testOptimizer .......................... Passed 0.00 sec Start 23: testUFFForceField 22/198 Test #23: testUFFForceField ...................... Passed 0.21 sec Start 24: testMMFFForceField 23/198 Test #24: testMMFFForceField ..................... Passed 9.43 sec Start 25: pyForceFieldConstraints 24/198 Test #4: testConcurrentQueue .................... Passed 27.51 sec Start 26: testDistGeom 25/198 Test #26: testDistGeom ........................... Passed 0.01 sec Start 27: pyDistGeom 26/198 Test #27: pyDistGeom ............................. Passed 0.11 sec Start 28: graphmolTest1 27/198 Test #25: pyForceFieldConstraints ................ Passed 0.73 sec Start 29: graphmolcpTest 28/198 Test #29: graphmolcpTest ......................... Passed 0.02 sec Start 30: graphmolqueryTest 29/198 Test #30: graphmolqueryTest ...................... Passed 0.02 sec Start 31: graphmolMolOpsTest 30/198 Test #31: graphmolMolOpsTest ..................... Passed 0.73 sec Start 32: graphmoltestChirality 31/198 Test #32: graphmoltestChirality .................. Passed 0.05 sec Start 33: graphmoltestPickler 32/198 Test #33: graphmoltestPickler .................... Passed 0.20 sec Start 34: graphmoltestPicklerGlobalSetting 33/198 Test #34: graphmoltestPicklerGlobalSetting ....... Passed 0.02 sec Start 35: graphmolIterTest 34/198 Test #35: graphmolIterTest ....................... Passed 0.02 sec Start 36: hanoiTest 35/198 Test #36: hanoiTest .............................. Passed 2.19 sec Start 37: graphmolMemTest1 36/198 Test #37: graphmolMemTest1 ....................... Passed 0.01 sec Start 38: resMolSupplierTest 37/198 Test #38: resMolSupplierTest ..................... Passed 3.02 sec Start 39: molBundleTest 38/198 Test #39: molBundleTest .......................... Passed 0.02 sec Start 40: testSGroup 39/198 Test #40: testSGroup ............................. Passed 0.02 sec Start 41: test-valgrind 40/198 Test #41: test-valgrind .......................... Passed 0.02 sec Start 42: graphmolTestsCatch 41/198 Test #42: graphmolTestsCatch ..................... Passed 0.06 sec Start 43: graphmolOrganometallicsCatch 42/198 Test #43: graphmolOrganometallicsCatch ........... Passed 0.03 sec Start 44: graphmolSGroupCatch 43/198 Test #44: graphmolSGroupCatch .................... Passed 0.02 sec Start 45: graphmolAdjustQueryCatch 44/198 Test #45: graphmolAdjustQueryCatch ............... Passed 0.04 sec Start 46: chiralityTestsCatch 45/198 Test #46: chiralityTestsCatch .................... Passed 0.05 sec Start 47: canonTestsCatch 46/198 Test #47: canonTestsCatch ........................ Passed 0.02 sec Start 48: moliteratorTestsCatch 47/198 Test #48: moliteratorTestsCatch .................. Passed 0.02 sec Start 49: queryTestsCatch 48/198 Test #49: queryTestsCatch ........................ Passed 0.02 sec Start 50: smiTest1 49/198 Test #50: smiTest1 ............................... Passed 0.15 sec Start 51: smiTest2 50/198 Test #51: smiTest2 ............................... Passed 0.01 sec Start 52: cxsmilesTest 51/198 Test #52: cxsmilesTest ........................... Passed 0.02 sec Start 53: smaTest1 52/198 Test #53: smaTest1 ............................... Passed 0.10 sec Start 54: smiTestCatch 53/198 Test #54: smiTestCatch ........................... Passed 0.09 sec Start 55: nontetrahedralCatch 54/198 Test #55: nontetrahedralCatch .................... Passed 0.04 sec Start 56: testDepictor 55/198 Test #56: testDepictor ........................... Passed 0.28 sec Start 57: depictorCatch 56/198 Test #57: depictorCatch .......................... Passed 0.05 sec Start 58: pyDepictor 57/198 Test #58: pyDepictor ............................. Passed 0.40 sec Start 59: fileParsersTest1 58/198 Test #59: fileParsersTest1 ....................... Passed 5.14 sec Start 60: testMolSupplier 59/198 Test #60: testMolSupplier ........................ Passed 0.19 sec Start 61: testGeneralFileReader 60/198 Test #61: testGeneralFileReader .................. Passed 0.08 sec Start 62: testMultithreadedMolSupplier 61/198 Test #28: graphmolTest1 .......................... Passed 14.25 sec Start 63: testMolWriter 62/198 Test #63: testMolWriter .......................... Passed 0.20 sec Start 64: testTplParser 63/198 Test #64: testTplParser .......................... Passed 0.02 sec Start 65: testMol2ToMol 64/198 Test #65: testMol2ToMol .......................... Passed 0.03 sec Start 66: testSequence 65/198 Test #66: testSequence ........................... Passed 0.03 sec Start 67: testExtendedStereoParsing 66/198 Test #67: testExtendedStereoParsing .............. Passed 0.02 sec Start 68: fileParsersCatchTest 67/198 Test #68: fileParsersCatchTest ................... Passed 0.12 sec Start 69: testPropertyLists 68/198 Test #69: testPropertyLists ...................... Passed 0.02 sec Start 70: XYZFileParserCatchTest 69/198 Test #70: XYZFileParserCatchTest ................. Passed 0.02 sec Start 71: cdxmlParserCatchTest 70/198 Test #71: cdxmlParserCatchTest ................... Passed 0.09 sec Start 72: molfileStereoCatchTest 71/198 Test #72: molfileStereoCatchTest ................. Passed 0.02 sec Start 73: testSubstructMatch 72/198 Test #73: testSubstructMatch ..................... Passed 0.24 sec Start 74: substructTestCatch 73/198 Test #74: substructTestCatch ..................... Passed 0.23 sec Start 75: testGenericGroups 74/198 Test #75: testGenericGroups ...................... Passed 0.04 sec Start 76: testReaction 75/198 Test #76: testReaction ........................... Passed 0.31 sec Start 77: testReactionFingerprints 76/198 Test #77: testReactionFingerprints ............... Passed 0.03 sec Start 78: testEnumeration 77/198 Test #62: testMultithreadedMolSupplier ........... Passed 6.81 sec Start 79: rxnTestCatch 78/198 Test #79: rxnTestCatch ........................... Passed 0.06 sec Start 80: pyChemReactions 79/198 Test #80: pyChemReactions ........................ Passed 0.32 sec Start 81: pyChemReactionEnumerations 80/198 Test #81: pyChemReactionEnumerations ............. Passed 1.04 sec Start 82: pyChemReactionSanitize 81/198 Test #82: pyChemReactionSanitize ................. Passed 0.23 sec Start 83: testChemTransforms 82/198 Test #83: testChemTransforms ..................... Passed 0.05 sec Start 84: chemTransformsTestCatch 83/198 Test #78: testEnumeration ........................ Passed 6.31 sec Start 85: tautomerQueryTestCatch 84/198 Test #84: chemTransformsTestCatch ................ Passed 0.06 sec Start 86: pyTautomerQuery 85/198 Test #85: tautomerQueryTestCatch ................. Passed 0.12 sec Start 87: testSubgraphs1 86/198 Test #86: pyTautomerQuery ........................ Passed 0.22 sec Start 88: testSubgraphs2 87/198 Test #88: testSubgraphs2 ......................... Passed 0.02 sec Start 89: subgraphsCatch 88/198 Test #89: subgraphsCatch ......................... Passed 0.02 sec Start 90: filterCatalogTest 89/198 Test #87: testSubgraphs1 ......................... Passed 0.21 sec Start 91: pyFilterCatalog 90/198 Test #90: filterCatalogTest ...................... Passed 0.16 sec Start 92: testFragCatalog 91/198 Test #92: testFragCatalog ........................ Passed 0.44 sec Start 93: pyFragCatalog 92/198 Test #93: pyFragCatalog .......................... Passed 0.23 sec Start 94: testDescriptors 93/198 Test #91: pyFilterCatalog ........................ Passed 0.78 sec Start 95: testAUTOCORR2D 94/198 Test #95: testAUTOCORR2D ......................... Passed 0.40 sec Start 96: testATF 95/198 Test #96: testATF ................................ Passed 0.05 sec Start 97: testBCUT 96/198 Test #97: testBCUT ............................... Passed 0.89 sec Start 98: descriptorsTestCatch 97/198 Test #98: descriptorsTestCatch ................... Passed 0.06 sec Start 99: pyMolDescriptors 98/198 Test #99: pyMolDescriptors ....................... Passed 0.68 sec Start 100: pyMolDescriptors3D 99/198 Test #100: pyMolDescriptors3D ..................... Passed 0.56 sec Start 101: testFingerprints 100/198 Test #94: testDescriptors ........................ Passed 3.59 sec Start 102: testMHFPFingerprint 101/198 Test #102: testMHFPFingerprint .................... Passed 0.13 sec Start 103: testFingerprintGenerators 102/198 Test #103: testFingerprintGenerators .............. Passed 1.44 sec Start 104: fpTestCatch 103/198 Test #104: fpTestCatch ............................ Passed 0.05 sec Start 105: fpGenTestCatch 104/198 Test #105: fpGenTestCatch ......................... Passed 0.06 sec Start 106: pyTestGenerator 105/198 Test #106: pyTestGenerator ........................ Passed 0.60 sec Start 107: pyTestMHFP 106/198 Test #107: pyTestMHFP ............................. Passed 0.54 sec Start 108: testPartialCharges 107/198 Test #108: testPartialCharges ..................... Passed 0.05 sec Start 109: pyPartialCharges 108/198 Test #109: pyPartialCharges ....................... Passed 0.69 sec Start 110: testMolTransforms 109/198 Test #110: testMolTransforms ...................... Passed 0.08 sec Start 111: pyMolTransforms 110/198 Test #111: pyMolTransforms ........................ Passed 0.56 sec Start 112: testMMFFForceFieldHelpers 111/198 Test #101: testFingerprints ....................... Passed 6.30 sec Start 113: testMMFFForceFieldHelpersMultiThread 112/198 Test #113: testMMFFForceFieldHelpersMultiThread ... Passed 0.45 sec Start 114: testUFFForceFieldHelpers 113/198 Test #112: testMMFFForceFieldHelpers .............. Passed 7.70 sec Start 115: testCrystalForceField 114/198 Test #115: testCrystalForceField .................. Passed 0.08 sec Start 116: pyForceFieldHelpers 115/198 Test #116: pyForceFieldHelpers .................... Passed 0.37 sec Start 117: testDistGeomHelpers 116/198 Test #114: testUFFForceFieldHelpers ............... Passed 7.69 sec Start 118: distGeomHelpersCatch 117/198 Test #118: distGeomHelpersCatch ................... Passed 82.44 sec Start 119: pyDistGeomHelpers 118/198 Test #119: pyDistGeomHelpers ...................... Passed 38.65 sec Start 120: testMolAlign 119/198 Test #120: testMolAlign ........................... Passed 0.10 sec Start 121: testO3AAlign 120/198 Test #121: testO3AAlign ........................... Passed 33.43 sec Start 122: molAlignCatchTest 121/198 Test #122: molAlignCatchTest ...................... Passed 0.02 sec Start 123: pyMolAlign 122/198 Test #117: testDistGeomHelpers .................... Passed 163.88 sec Start 124: testFeatures 123/198 Test #124: testFeatures ........................... Passed 0.02 sec Start 125: pyChemicalFeatures 124/198 Test #125: pyChemicalFeatures ..................... Passed 0.26 sec Start 126: testShapeHelpers 125/198 Test #126: testShapeHelpers ....................... Passed 0.02 sec Start 127: pyShapeHelpers 126/198 Test #123: pyMolAlign ............................. Passed 8.48 sec Start 128: testMolCatalog 127/198 Test #128: testMolCatalog ......................... Passed 0.02 sec Start 129: pyMolCatalog 128/198 Test #127: pyShapeHelpers ......................... Passed 0.23 sec Start 130: moldraw2DTest1 129/198 Test #129: pyMolCatalog ........................... Passed 0.19 sec Start 131: moldraw2DTestCatch 130/198 Test #131: moldraw2DTestCatch ..................... Passed 3.20 sec Start 132: moldraw2DRxnTest1 131/198 Test #132: moldraw2DRxnTest1 ...................... Passed 0.88 sec Start 133: pyMolDraw2D 132/198 Test #133: pyMolDraw2D ............................ Passed 1.09 sec Start 134: testFMCS 133/198 Test #130: moldraw2DTest1 ......................... Passed 9.72 sec Start 135: pyFMCS 134/198 Test #134: testFMCS ............................... Passed 4.52 sec Start 136: FMCStest 135/198 Test #136: FMCStest ............................... Passed 0.02 sec Start 137: molHashCatchTest 136/198 Test #137: molHashCatchTest ....................... Passed 0.04 sec Start 138: pyMolHash 137/198 Test #138: pyMolHash .............................. Passed 0.19 sec Start 139: testMMPA 138/198 Test #139: testMMPA ............................... Passed 0.08 sec Start 140: pyMMPA 139/198 Test #140: pyMMPA ................................. Passed 1.04 sec Start 141: testCIPLabeler 140/198 Test #141: testCIPLabeler ......................... Passed 0.09 sec Start 142: pyCIPLabelsWrapTest 141/198 Test #142: pyCIPLabelsWrapTest .................... Passed 0.19 sec Start 143: pyCIPLabelsValidation 142/198 Test #135: pyFMCS ................................. Passed 3.07 sec Start 144: deprotectTest 143/198 Test #144: deprotectTest .......................... Passed 0.05 sec Start 145: pyDeprotect 144/198 Test #145: pyDeprotect ............................ Passed 0.21 sec Start 146: testReducedGraphs 145/198 Test #146: testReducedGraphs ...................... Passed 0.06 sec Start 147: pyReducedGraphs 146/198 Test #147: pyReducedGraphs ........................ Passed 0.19 sec Start 148: trajectoryTest 147/198 Test #148: trajectoryTest ......................... Passed 0.21 sec Start 149: substructLibraryTest 148/198 Test #143: pyCIPLabelsValidation .................. Passed 5.04 sec Start 150: substructLibraryCatchTest 149/198 Test #150: substructLibraryCatchTest .............. Passed 0.03 sec Start 151: pySubstructLibrary 150/198 Test #149: substructLibraryTest ................... Passed 4.22 sec Start 152: testRGroupDecomp 151/198 Test #151: pySubstructLibrary ..................... Passed 3.69 sec Start 153: testRGroupDecompInternals 152/198 Test #153: testRGroupDecompInternals .............. Passed 0.02 sec Start 154: rgroupCatchTests 153/198 Test #154: rgroupCatchTests ....................... Passed 0.14 sec Start 155: pyRGroupDecomposition 154/198 Test #155: pyRGroupDecomposition .................. Passed 1.45 sec Start 156: testSLNParse 155/198 Test #156: testSLNParse ........................... Passed 0.02 sec Start 157: pySLNParse 156/198 Test #157: pySLNParse ............................. Passed 0.19 sec Start 158: pyGraphMolWrap 157/198 Test #152: testRGroupDecomp ....................... Passed 5.39 sec Start 159: pyTestConformerWrap 158/198 Test #159: pyTestConformerWrap .................... Passed 0.20 sec Start 160: pyTestTrajectory 159/198 Test #160: pyTestTrajectory ....................... Passed 0.40 sec Start 161: pyTestSGroups 160/198 Test #161: pyTestSGroups .......................... Passed 0.21 sec Start 162: pyTestThreads 161/198 Test #162: pyTestThreads .......................... Passed 0.20 sec Start 163: pyTestMultithreadedMolSupplier 162/198 Test #163: pyTestMultithreadedMolSupplier ......... Passed 0.25 sec Start 164: pyTestPropertyLists 163/198 Test #164: pyTestPropertyLists .................... Passed 0.19 sec Start 165: pyCDXMLTest 164/198 Test #165: pyCDXMLTest ............................ Passed 0.20 sec Start 166: molStandardizeTest 165/198 Test #166: molStandardizeTest ..................... Passed 0.70 sec Start 167: molNormalizeTest 166/198 Test #167: molNormalizeTest ....................... Passed 0.10 sec Start 168: molValidateTest 167/198 Test #168: molValidateTest ........................ Passed 0.03 sec Start 169: molChargeTest 168/198 Test #169: molChargeTest .......................... Passed 0.06 sec Start 170: molTautomerTest 169/198 Test #170: molTautomerTest ........................ Passed 1.67 sec Start 171: molStandardizeSmallTest 170/198 Test #171: molStandardizeSmallTest ................ Passed 0.03 sec Start 172: molFragmentTest 171/198 Test #172: molFragmentTest ........................ Passed 0.04 sec Start 173: molStandardizeCatchTest 172/198 Test #173: molStandardizeCatchTest ................ Passed 0.15 sec Start 174: pyMolStandardize 173/198 Test #174: pyMolStandardize ....................... Passed 1.61 sec Start 175: testScaffoldNetwork 174/198 Test #175: testScaffoldNetwork .................... Passed 0.67 sec Start 176: pyScaffoldNetwork 175/198 Test #176: pyScaffoldNetwork ...................... Passed 0.21 sec Start 177: pyScaffoldNetworkPickling 176/198 Test #177: pyScaffoldNetworkPickling .............. Passed 0.19 sec Start 178: testMolEnumerator 177/198 Test #178: testMolEnumerator ...................... Passed 0.04 sec Start 179: pyMolEnumerator 178/198 Test #179: pyMolEnumerator ........................ Passed 0.19 sec Start 180: testAbbreviations 179/198 Test #180: testAbbreviations ...................... Passed 0.03 sec Start 181: pyAbbreviations 180/198 Test #181: pyAbbreviations ........................ Passed 0.19 sec Start 182: testQuery 181/198 Test #182: testQuery .............................. Passed 0.00 sec Start 183: testMatCalc 182/198 Test #183: testMatCalc ............................ Passed 0.00 sec Start 184: pyMatCalc 183/198 Test #184: pyMatCalc .............................. Passed 0.45 sec Start 185: testSimDivPickers 184/198 Test #185: testSimDivPickers ...................... Passed 0.00 sec Start 186: pickersTestsCatch 185/198 Test #186: pickersTestsCatch ...................... Passed 0.06 sec Start 187: pySimDivPickers 186/198 Test #158: pyGraphMolWrap ......................... Passed 9.57 sec Start 188: pyRanker 187/198 Test #188: pyRanker ............................... Passed 0.19 sec Start 189: testChemicalFeatures 188/198 Test #189: testChemicalFeatures ................... Passed 0.00 sec Start 190: pyFeatures 189/198 Test #190: pyFeatures ............................. Passed 0.19 sec Start 191: pythonTestDbCLI 190/198 Test #187: pySimDivPickers ........................ Passed 0.92 sec Start 192: pythonTestDirRoot 191/198 Test #192: pythonTestDirRoot ...................... Passed 0.20 sec Start 193: pythonTestDirML 192/198 Test #193: pythonTestDirML ........................ Passed 8.79 sec Start 194: pythonTestDirDataStructs 193/198 Test #194: pythonTestDirDataStructs ............... Passed 0.79 sec Start 195: pythonTestDirDbase 194/198 Test #195: pythonTestDirDbase ..................... Passed 0.46 sec Start 196: pythonTestDirSimDivFilters 195/198 Test #196: pythonTestDirSimDivFilters ............. Passed 0.26 sec Start 197: pythonTestDirVLib 196/198 Test #197: pythonTestDirVLib ...................... Passed 0.44 sec Start 198: pythonTestSping 197/198 Test #191: pythonTestDbCLI ........................ Passed 11.13 sec 198/198 Test #198: pythonTestSping ........................ Passed 0.29 sec 100% tests passed, 0 tests failed out of 198 Total Test time (real) = 277.54 sec + RPM_EC=0 ++ jobs -p + exit 0 Processing files: rdkit-2023.03.2-1.fc39.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.ZzT3Gm + umask 022 + cd /builddir/build/BUILD + cd rdkit-Release_2023_03_2 + DOCDIR=/builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/share/doc/rdkit + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/share/doc/rdkit + cp -pr /builddir/build/BUILD/rdkit-Release_2023_03_2/ReleaseNotes.md /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/share/doc/rdkit + cp -pr /builddir/build/BUILD/rdkit-Release_2023_03_2/README /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/share/doc/rdkit + cp -pr /builddir/build/BUILD/rdkit-Release_2023_03_2/README.md /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/share/doc/rdkit + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.oYn7BA + umask 022 + cd /builddir/build/BUILD + cd rdkit-Release_2023_03_2 + LICENSEDIR=/builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/share/licenses/rdkit + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/share/licenses/rdkit + cp -pr /builddir/build/BUILD/rdkit-Release_2023_03_2/license.txt /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/share/licenses/rdkit + RPM_EC=0 ++ jobs -p + exit 0 Provides: libRDKitAbbreviations.so.1()(64bit) libRDKitAlignment.so.1()(64bit) libRDKitCIPLabeler.so.1()(64bit) libRDKitCatalogs.so.1()(64bit) libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitChemicalFeatures.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDeprotect.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitDistGeomHelpers.so.1()(64bit) libRDKitDistGeometry.so.1()(64bit) libRDKitEigenSolvers.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFilterCatalog.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitForceField.so.1()(64bit) libRDKitForceFieldHelpers.so.1()(64bit) libRDKitFragCatalog.so.1()(64bit) libRDKitGenericGroups.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitInfoTheory.so.1()(64bit) libRDKitMMPA.so.1()(64bit) libRDKitMolAlign.so.1()(64bit) libRDKitMolCatalog.so.1()(64bit) libRDKitMolChemicalFeatures.so.1()(64bit) libRDKitMolDraw2D.so.1()(64bit) libRDKitMolEnumerator.so.1()(64bit) libRDKitMolHash.so.1()(64bit) libRDKitMolStandardize.so.1()(64bit) libRDKitMolTransforms.so.1()(64bit) libRDKitO3AAlign.so.1()(64bit) libRDKitOptimizer.so.1()(64bit) libRDKitPartialCharges.so.1()(64bit) libRDKitRDBoost.so.1()(64bit) libRDKitRDGeneral.so.1()(64bit) libRDKitRDGeometryLib.so.1()(64bit) libRDKitRDInchiLib.so.1()(64bit) libRDKitRDStreams.so.1()(64bit) libRDKitRGroupDecomposition.so.1()(64bit) libRDKitReducedGraphs.so.1()(64bit) libRDKitSLNParse.so.1()(64bit) libRDKitScaffoldNetwork.so.1()(64bit) libRDKitShapeHelpers.so.1()(64bit) libRDKitSimDivPickers.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitSubgraphs.so.1()(64bit) libRDKitSubstructLibrary.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libRDKitTautomerQuery.so.1()(64bit) libRDKitTrajectory.so.1()(64bit) libRDKitga.so.1()(64bit) libRDKithc.so.1()(64bit) librdkitCatch.so()(64bit) rdkit = 2023.03.2-1.fc39 rdkit(x86-64) = 2023.03.2-1.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: glibc >= 2.37.9000-15 ld-linux-x86-64.so.2()(64bit) ld-linux-x86-64.so.2(GLIBC_2.3)(64bit) libRDKitAlignment.so.1()(64bit) libRDKitCatalogs.so.1()(64bit) libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitDistGeometry.so.1()(64bit) libRDKitEigenSolvers.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFilterCatalog.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitForceField.so.1()(64bit) libRDKitForceFieldHelpers.so.1()(64bit) libRDKitGenericGroups.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitMolAlign.so.1()(64bit) libRDKitMolStandardize.so.1()(64bit) libRDKitMolTransforms.so.1()(64bit) libRDKitPartialCharges.so.1()(64bit) libRDKitRDGeneral.so.1()(64bit) libRDKitRDGeometryLib.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitSubgraphs.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libRDKitTautomerQuery.so.1()(64bit) libRDKitga.so.1()(64bit) libRDKithc.so.1()(64bit) libboost_iostreams.so.1.81.0()(64bit) libboost_python311.so.1.81.0()(64bit) libboost_serialization.so.1.81.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libcairo.so.2()(64bit) libfreetype.so.6()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgcc_s.so.1(GCC_3.4)(64bit) libinchi.so.1()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.38)(64bit) libmaeparser.so.1()(64bit) libpython3.11.so.1.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.11)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.7)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.17)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.5)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Processing files: rdkit-devel-2023.03.2-1.fc39.x86_64 Provides: cmake(rdkit) = 2023.03.2 rdkit-devel = 2023.03.2-1.fc39 rdkit-devel(x86-64) = 2023.03.2-1.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: cmake-filesystem(x86-64) libRDKitAbbreviations.so.1()(64bit) libRDKitAlignment.so.1()(64bit) libRDKitCIPLabeler.so.1()(64bit) libRDKitCatalogs.so.1()(64bit) libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitChemicalFeatures.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDeprotect.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitDistGeomHelpers.so.1()(64bit) libRDKitDistGeometry.so.1()(64bit) libRDKitEigenSolvers.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFilterCatalog.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitForceField.so.1()(64bit) libRDKitForceFieldHelpers.so.1()(64bit) libRDKitFragCatalog.so.1()(64bit) libRDKitGenericGroups.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitInfoTheory.so.1()(64bit) libRDKitMMPA.so.1()(64bit) libRDKitMolAlign.so.1()(64bit) libRDKitMolCatalog.so.1()(64bit) libRDKitMolChemicalFeatures.so.1()(64bit) libRDKitMolDraw2D.so.1()(64bit) libRDKitMolEnumerator.so.1()(64bit) libRDKitMolHash.so.1()(64bit) libRDKitMolStandardize.so.1()(64bit) libRDKitMolTransforms.so.1()(64bit) libRDKitO3AAlign.so.1()(64bit) libRDKitOptimizer.so.1()(64bit) libRDKitPartialCharges.so.1()(64bit) libRDKitRDBoost.so.1()(64bit) libRDKitRDGeneral.so.1()(64bit) libRDKitRDGeometryLib.so.1()(64bit) libRDKitRDInchiLib.so.1()(64bit) libRDKitRDStreams.so.1()(64bit) libRDKitRGroupDecomposition.so.1()(64bit) libRDKitReducedGraphs.so.1()(64bit) libRDKitSLNParse.so.1()(64bit) libRDKitScaffoldNetwork.so.1()(64bit) libRDKitShapeHelpers.so.1()(64bit) libRDKitSimDivPickers.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitSubgraphs.so.1()(64bit) libRDKitSubstructLibrary.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libRDKitTautomerQuery.so.1()(64bit) libRDKitTrajectory.so.1()(64bit) libRDKitga.so.1()(64bit) libRDKithc.so.1()(64bit) librdkitCatch.so()(64bit) Processing files: rdkit-doc-2023.03.2-1.fc39.noarch Processing files: python3-rdkit-2023.03.2-1.fc39.x86_64 Provides: python-rdkit = 2023.03.2-1.fc39 python3-rdkit = 2023.03.2-1.fc39 python3-rdkit(x86-64) = 2023.03.2-1.fc39 python3.11-rdkit = 2023.03.2-1.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-x86-64.so.2()(64bit) ld-linux-x86-64.so.2(GLIBC_2.3)(64bit) libRDKitAbbreviations.so.1()(64bit) libRDKitAlignment.so.1()(64bit) libRDKitCIPLabeler.so.1()(64bit) libRDKitCatalogs.so.1()(64bit) libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitChemicalFeatures.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDeprotect.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitDistGeomHelpers.so.1()(64bit) libRDKitDistGeometry.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFilterCatalog.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitForceField.so.1()(64bit) libRDKitForceFieldHelpers.so.1()(64bit) libRDKitFragCatalog.so.1()(64bit) libRDKitGenericGroups.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitInfoTheory.so.1()(64bit) libRDKitMMPA.so.1()(64bit) libRDKitMolAlign.so.1()(64bit) libRDKitMolCatalog.so.1()(64bit) libRDKitMolChemicalFeatures.so.1()(64bit) libRDKitMolDraw2D.so.1()(64bit) libRDKitMolEnumerator.so.1()(64bit) libRDKitMolHash.so.1()(64bit) libRDKitMolStandardize.so.1()(64bit) libRDKitMolTransforms.so.1()(64bit) libRDKitO3AAlign.so.1()(64bit) libRDKitPartialCharges.so.1()(64bit) libRDKitRDBoost.so.1()(64bit) libRDKitRDGeneral.so.1()(64bit) libRDKitRDGeometryLib.so.1()(64bit) libRDKitRDInchiLib.so.1()(64bit) libRDKitRGroupDecomposition.so.1()(64bit) libRDKitReducedGraphs.so.1()(64bit) libRDKitSLNParse.so.1()(64bit) libRDKitScaffoldNetwork.so.1()(64bit) libRDKitShapeHelpers.so.1()(64bit) libRDKitSimDivPickers.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitSubgraphs.so.1()(64bit) libRDKitSubstructLibrary.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libRDKitTautomerQuery.so.1()(64bit) libRDKitTrajectory.so.1()(64bit) libRDKithc.so.1()(64bit) libboost_python311.so.1.81.0()(64bit) libboost_serialization.so.1.81.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libcairo.so.2()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libpython3.11.so.1.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.7)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.17)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) python(abi) = 3.11 rtld(GNU_HASH) Processing files: rdkit-postgresql-2023.03.2-1.fc39.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.qneGf0 + umask 022 + cd /builddir/build/BUILD + cd rdkit-Release_2023_03_2 + DOCDIR=/builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/share/doc/rdkit-postgresql + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/share/doc/rdkit-postgresql + cp -pr /builddir/build/BUILD/rdkit-Release_2023_03_2/Code/PgSQL/rdkit/README_PgSQL.md /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64/usr/share/doc/rdkit-postgresql + RPM_EC=0 ++ jobs -p + exit 0 Provides: librdkit.so()(64bit) rdkit-postgresql = 2023.03.2-1.fc39 rdkit-postgresql(x86-64) = 2023.03.2-1.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitGenericGroups.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitMolDraw2D.so.1()(64bit) libRDKitMolHash.so.1()(64bit) libRDKitRDInchiLib.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) rtld(GNU_HASH) Processing files: rdkit-debugsource-2023.03.2-1.fc39.x86_64 Provides: rdkit-debugsource = 2023.03.2-1.fc39 rdkit-debugsource(x86-64) = 2023.03.2-1.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: rdkit-debuginfo-2023.03.2-1.fc39.x86_64 Provides: debuginfo(build-id) = 028134d9844f47b751c6c6fc6faaf9f12bb82e5d debuginfo(build-id) = 04ee2eb0c2580e9fd8535a99f2761e65f6534e9e debuginfo(build-id) = 066b94e1b61ee5a660a059e31e8793d1e5c31d83 debuginfo(build-id) = 06fa36c7ac3490444cd2a226176b7ee7366f9d32 debuginfo(build-id) = 0e8151605dc7f279ded593df2d4f1bd71effbc7d debuginfo(build-id) = 0f0e96e5dd582488cc49c5edce7d55674ae3c6f4 debuginfo(build-id) = 19aab2d605b750165dd2e849de43aa8a81f97582 debuginfo(build-id) = 293856aafe16ecdaad6b385e20e8a235bc368811 debuginfo(build-id) = 29513b5d19ab1649c38361ae92c548ff1ebfa7de debuginfo(build-id) = 2b6b3d5f2ca9fd8d3a453078513bf8e14011f520 debuginfo(build-id) = 3164cb5eefbcc997e4fc479d34a69296df77495e debuginfo(build-id) = 368369baf4962125b0ce1e7e239ad21f54398345 debuginfo(build-id) = 3ab9f24e4354de357cbea3678f4c5a0d0cfd220a debuginfo(build-id) = 3b47f22faa6869f2f6cb69f1532b1e6fa54ae74e debuginfo(build-id) = 46569049315e16196ca9d4755d1820493b1981ea debuginfo(build-id) = 483081de8e7df3a1bd50f11f09a53dbe15d6852a debuginfo(build-id) = 4f3c001f6bcbc8d4f29bdbe80fd02958acec5c76 debuginfo(build-id) = 5397373f588020fc7691b8e0013c6ae27ad228ab debuginfo(build-id) = 55b49973b8337d2e1d88b696445cb12bf9cf65f8 debuginfo(build-id) = 57b8b5724893a0b15124f8c245d7ed538e1e15c9 debuginfo(build-id) = 5d9aa76ebbd64000eee9a5e1ca1f3a8e7e9b89e5 debuginfo(build-id) = 63f854cfdd60f7813c801d271db5c46718edba9f debuginfo(build-id) = 64cfe11519958be18ed23c14f482fc5c613f493e debuginfo(build-id) = 6d40ffb9f8b9450d7ba292467ef5c98189cc5594 debuginfo(build-id) = 6e22a743bc523a4993bb16ad01ac51d453a6136b debuginfo(build-id) = 729c95595a9c9769b5707aad65427acea128e209 debuginfo(build-id) = 7623eecb602793872c91e2671af6940069ebc8b5 debuginfo(build-id) = 7b4d39d85cc7816d00713ef95558c8b94226ce94 debuginfo(build-id) = 7bc43d85bb707c65ab0e0c31d74375ba82bde811 debuginfo(build-id) = 7fb1939729929d10db4188f86782d843c63619ea debuginfo(build-id) = 81a2f979ca6c3b5e6c151e66603a5cf45caf7878 debuginfo(build-id) = 85d1931e0daa0f72a9e03dac802167f1c3950a67 debuginfo(build-id) = 8bc21d77700b2502023025b0c98b1969dc7be4ab debuginfo(build-id) = 8cb7d2179c627aced390a60d46c796d387c82b40 debuginfo(build-id) = a6a5947151296cda098da3f025e6144d630e6e5d debuginfo(build-id) = a95093cf5ec802db14637d711fd44f9cfa1d5074 debuginfo(build-id) = ab8ace8a5455769c7d206676f6f3bff12ad36a0a debuginfo(build-id) = af28ef6d1fd89d1b727a9dd2b3f775094bd7a17f debuginfo(build-id) = b08455a733fe7758c5d3168a3dacb84a900a997e debuginfo(build-id) = b37629ae688adc42ef702b01fb0b7cce6cfaa018 debuginfo(build-id) = b5b8009a2f119a62c887a90ed9bf3945940059e7 debuginfo(build-id) = b98eb5c8822d6935c906ab74c8c2c8513111d79b debuginfo(build-id) = b9a1bd910c368b07c01fb755064b9d563340af75 debuginfo(build-id) = bd84192378d0598224c7a97250c47025bd012b2e debuginfo(build-id) = bff97095bcc9eea816bb44f4686f2a518b0b62fe debuginfo(build-id) = c3c9e2f7f8d2f32fad17d86884793ca45c8ed5d1 debuginfo(build-id) = cf33fa9dd86ace4c21a39c5046b19d897b71f782 debuginfo(build-id) = d27bf6010476d633f505afbcc664fdcee7cd0ae3 debuginfo(build-id) = d360a34a979aa437bb301d1f455ee4bc52b42cba debuginfo(build-id) = e3c16f999f4bc70a48ac24d0c0fec23585234d08 debuginfo(build-id) = e6328a1812d37d01e66adba07b2a377fe6f1942c debuginfo(build-id) = ed10de3b77e816b02f41b511167db204ce571c09 debuginfo(build-id) = f43d43f7b6361ddcfac1ee7c6d38d4e8744d21b5 debuginfo(build-id) = f91c7d5025126a64b0904f7b90a38e81691a4fa6 debuginfo(build-id) = ff65b3f9aa832431e0dd898c493db939ff97ad65 debuginfo(build-id) = ffecf1216b40031d7accd1a1bc750ff632612e4d libRDKitAbbreviations.so.1.2023.03.2-2023.03.2-1.fc39.x86_64.debug()(64bit) libRDKitAlignment.so.1.2023.03.2-2023.03.2-1.fc39.x86_64.debug()(64bit) libRDKitCIPLabeler.so.1.2023.03.2-2023.03.2-1.fc39.x86_64.debug()(64bit) libRDKitCatalogs.so.1.2023.03.2-2023.03.2-1.fc39.x86_64.debug()(64bit) libRDKitChemReactions.so.1.2023.03.2-2023.03.2-1.fc39.x86_64.debug()(64bit) libRDKitChemTransforms.so.1.2023.03.2-2023.03.2-1.fc39.x86_64.debug()(64bit) libRDKitChemicalFeatures.so.1.2023.03.2-2023.03.2-1.fc39.x86_64.debug()(64bit) libRDKitDataStructs.so.1.2023.03.2-2023.03.2-1.fc39.x86_64.debug()(64bit) libRDKitDepictor.so.1.2023.03.2-2023.03.2-1.fc39.x86_64.debug()(64bit) libRDKitDeprotect.so.1.2023.03.2-2023.03.2-1.fc39.x86_64.debug()(64bit) libRDKitDescriptors.so.1.2023.03.2-2023.03.2-1.fc39.x86_64.debug()(64bit) libRDKitDistGeomHelpers.so.1.2023.03.2-2023.03.2-1.fc39.x86_64.debug()(64bit) libRDKitDistGeometry.so.1.2023.03.2-2023.03.2-1.fc39.x86_64.debug()(64bit) libRDKitEigenSolvers.so.1.2023.03.2-2023.03.2-1.fc39.x86_64.debug()(64bit) libRDKitFMCS.so.1.2023.03.2-2023.03.2-1.fc39.x86_64.debug()(64bit) libRDKitFileParsers.so.1.2023.03.2-2023.03.2-1.fc39.x86_64.debug()(64bit) libRDKitFilterCatalog.so.1.2023.03.2-2023.03.2-1.fc39.x86_64.debug()(64bit) libRDKitFingerprints.so.1.2023.03.2-2023.03.2-1.fc39.x86_64.debug()(64bit) libRDKitForceField.so.1.2023.03.2-2023.03.2-1.fc39.x86_64.debug()(64bit) libRDKitForceFieldHelpers.so.1.2023.03.2-2023.03.2-1.fc39.x86_64.debug()(64bit) libRDKitFragCatalog.so.1.2023.03.2-2023.03.2-1.fc39.x86_64.debug()(64bit) libRDKitGenericGroups.so.1.2023.03.2-2023.03.2-1.fc39.x86_64.debug()(64bit) libRDKitGraphMol.so.1.2023.03.2-2023.03.2-1.fc39.x86_64.debug()(64bit) libRDKitInfoTheory.so.1.2023.03.2-2023.03.2-1.fc39.x86_64.debug()(64bit) libRDKitMMPA.so.1.2023.03.2-2023.03.2-1.fc39.x86_64.debug()(64bit) libRDKitMolAlign.so.1.2023.03.2-2023.03.2-1.fc39.x86_64.debug()(64bit) libRDKitMolCatalog.so.1.2023.03.2-2023.03.2-1.fc39.x86_64.debug()(64bit) libRDKitMolChemicalFeatures.so.1.2023.03.2-2023.03.2-1.fc39.x86_64.debug()(64bit) libRDKitMolDraw2D.so.1.2023.03.2-2023.03.2-1.fc39.x86_64.debug()(64bit) libRDKitMolEnumerator.so.1.2023.03.2-2023.03.2-1.fc39.x86_64.debug()(64bit) libRDKitMolHash.so.1.2023.03.2-2023.03.2-1.fc39.x86_64.debug()(64bit) libRDKitMolStandardize.so.1.2023.03.2-2023.03.2-1.fc39.x86_64.debug()(64bit) libRDKitMolTransforms.so.1.2023.03.2-2023.03.2-1.fc39.x86_64.debug()(64bit) libRDKitO3AAlign.so.1.2023.03.2-2023.03.2-1.fc39.x86_64.debug()(64bit) libRDKitOptimizer.so.1.2023.03.2-2023.03.2-1.fc39.x86_64.debug()(64bit) libRDKitPartialCharges.so.1.2023.03.2-2023.03.2-1.fc39.x86_64.debug()(64bit) libRDKitRDBoost.so.1.2023.03.2-2023.03.2-1.fc39.x86_64.debug()(64bit) libRDKitRDGeneral.so.1.2023.03.2-2023.03.2-1.fc39.x86_64.debug()(64bit) libRDKitRDGeometryLib.so.1.2023.03.2-2023.03.2-1.fc39.x86_64.debug()(64bit) libRDKitRDInchiLib.so.1.2023.03.2-2023.03.2-1.fc39.x86_64.debug()(64bit) libRDKitRDStreams.so.1.2023.03.2-2023.03.2-1.fc39.x86_64.debug()(64bit) libRDKitRGroupDecomposition.so.1.2023.03.2-2023.03.2-1.fc39.x86_64.debug()(64bit) libRDKitReducedGraphs.so.1.2023.03.2-2023.03.2-1.fc39.x86_64.debug()(64bit) libRDKitSLNParse.so.1.2023.03.2-2023.03.2-1.fc39.x86_64.debug()(64bit) libRDKitScaffoldNetwork.so.1.2023.03.2-2023.03.2-1.fc39.x86_64.debug()(64bit) libRDKitShapeHelpers.so.1.2023.03.2-2023.03.2-1.fc39.x86_64.debug()(64bit) libRDKitSimDivPickers.so.1.2023.03.2-2023.03.2-1.fc39.x86_64.debug()(64bit) libRDKitSmilesParse.so.1.2023.03.2-2023.03.2-1.fc39.x86_64.debug()(64bit) libRDKitSubgraphs.so.1.2023.03.2-2023.03.2-1.fc39.x86_64.debug()(64bit) libRDKitSubstructLibrary.so.1.2023.03.2-2023.03.2-1.fc39.x86_64.debug()(64bit) libRDKitSubstructMatch.so.1.2023.03.2-2023.03.2-1.fc39.x86_64.debug()(64bit) libRDKitTautomerQuery.so.1.2023.03.2-2023.03.2-1.fc39.x86_64.debug()(64bit) libRDKitTrajectory.so.1.2023.03.2-2023.03.2-1.fc39.x86_64.debug()(64bit) libRDKitga.so.1.2023.03.2-2023.03.2-1.fc39.x86_64.debug()(64bit) libRDKithc.so.1.2023.03.2-2023.03.2-1.fc39.x86_64.debug()(64bit) librdkitCatch.so.1.2023.03.2-2023.03.2-1.fc39.x86_64.debug()(64bit) rdkit-debuginfo = 2023.03.2-1.fc39 rdkit-debuginfo(x86-64) = 2023.03.2-1.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: rdkit-debugsource(x86-64) = 2023.03.2-1.fc39 Processing files: python3-rdkit-debuginfo-2023.03.2-1.fc39.x86_64 Provides: debuginfo(build-id) = 034e12095e887b190ce325d2e8f0286341044419 debuginfo(build-id) = 0f7cee213fd5c5fbee65119c69b35bfbd1195140 debuginfo(build-id) = 2344f930fe0f362a4cf07f6af23cbeef00d9bcaa debuginfo(build-id) = 25af856a629d9b1bc5d93060d5c46a7b0d9d8f7b debuginfo(build-id) = 25c263a16b88977397803adaffcba97df9b6ff96 debuginfo(build-id) = 27b32429b8cba39ed8f291f0106a6bcd1b43bca4 debuginfo(build-id) = 29ec437513c44fa4e8cafab056e137f1d6cee9ad debuginfo(build-id) = 2ada1809c05883710aca1120ec5e86dc4d30953a debuginfo(build-id) = 2dd24614a77f4bdb21e1800424ba5146ac80b636 debuginfo(build-id) = 347a846adb5a28d1be36945236070e6de1e799bb debuginfo(build-id) = 380f4508aa97302f80b011336ef41a83901f60e7 debuginfo(build-id) = 3930a465cfc4039142f0443255cb5f75b29f33ee debuginfo(build-id) = 3b5bcb2a9f380bfcf9fd63aa08928d53caaede10 debuginfo(build-id) = 4048474d740545488fe2094edf6bc8b8347ef270 debuginfo(build-id) = 50bbc185b9cf56bba7ea9e5ae79300c44c19cb50 debuginfo(build-id) = 51636b8c5e0b5831f75528774208d310f10fef85 debuginfo(build-id) = 586708c96e736a8abf00cd5c2730549e7e78ce03 debuginfo(build-id) = 59b08d08848fe24abc1e0faadb4a7da4075dc40e debuginfo(build-id) = 5c0d6622c771a482a08a581ae326b0ced18f5899 debuginfo(build-id) = 5d6c984dab72ceb30efa5cff43174093fc376c12 debuginfo(build-id) = 5e6bd086b859be9b1ed01ea7802367f94656f7c8 debuginfo(build-id) = 5fc9e7eaf2dea7f65b9bfe3a3cdaa7ec61af426e debuginfo(build-id) = 6c5f7af2efebf82ee1cbe12dd1a19f04b3abfe4f debuginfo(build-id) = 7623058095b82092c25c4f5736a001624b729ac1 debuginfo(build-id) = 76a3ac03cc66d5e732bfc38a372c9f3b2badae48 debuginfo(build-id) = 7b08c51bf813303a9ea4d305914794de9f4e98b8 debuginfo(build-id) = 859b94a2c503bfd7dd29582e09584c520b2ad661 debuginfo(build-id) = 94485fc7fa31255a08ce2f10c2ef2d6b7ad496a7 debuginfo(build-id) = a010cea843cf77a9fe270ac8d3cd8504bc60a9c2 debuginfo(build-id) = a8991cb9f70175534e946cfa9a9cd4f358c90158 debuginfo(build-id) = ab500839b43495ffe749f6ea9410928867cb7434 debuginfo(build-id) = b143993955803010031eddc76bb8edc9a4bb5910 debuginfo(build-id) = b32cf54a76ec82c719adbfa060ecd910243e7288 debuginfo(build-id) = bba646dc1d0110eb9ced6c5dcae2bed3a2fd7a4a debuginfo(build-id) = c4ce5fd0623e27795b088330be594dc8ac26d56d debuginfo(build-id) = d29fe8ea1e44133b4dd1621f25cde37a5229e2f9 debuginfo(build-id) = da937b0fb4532d1c73dd2937171ea1a85d156bdf debuginfo(build-id) = dad80391da1d6038953d0ec9166c5b09785d6aaa debuginfo(build-id) = e016eef12fe6e7af9ea49ba9529219fb903abeba debuginfo(build-id) = e54ba6c91c5e21550cb65b48ce523b8e3b6db485 debuginfo(build-id) = e662b85e483ad47e37d06ea667eea4b414ca62fa debuginfo(build-id) = ea6c3f11c99e6322332edb976112dde1662e1105 debuginfo(build-id) = ebdfa90fc340c03523cdacb188f0f2ba6d83e52c debuginfo(build-id) = efca2d2453b2bcdd094103cc5a91e2679a1c8e37 debuginfo(build-id) = f1c520f8fc66da2f82280a21b2eb47fcf0caf23a debuginfo(build-id) = f4cb9e2d1789ff33f1af8b8e673b1a04437fcb22 debuginfo(build-id) = f8249d72259d7ef6af494f91c5f4ec45573cd249 debuginfo(build-id) = fbabc3f7695f872707903bccf95b529c9fb2f9de python-rdkit-debuginfo = 2023.03.2-1.fc39 python3-rdkit-debuginfo = 2023.03.2-1.fc39 python3-rdkit-debuginfo(x86-64) = 2023.03.2-1.fc39 python3.11-rdkit-debuginfo = 2023.03.2-1.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: rdkit-debugsource(x86-64) = 2023.03.2-1.fc39 Processing files: rdkit-postgresql-debuginfo-2023.03.2-1.fc39.x86_64 Provides: debuginfo(build-id) = 1131ab2716f8098ab26fb0dd2407acfa2286d18c rdkit-postgresql-debuginfo = 2023.03.2-1.fc39 rdkit-postgresql-debuginfo(x86-64) = 2023.03.2-1.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: rdkit-debugsource(x86-64) = 2023.03.2-1.fc39 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64 Wrote: /builddir/build/RPMS/rdkit-debuginfo-2023.03.2-1.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/python3-rdkit-2023.03.2-1.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/python3-rdkit-debuginfo-2023.03.2-1.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/rdkit-2023.03.2-1.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/rdkit-postgresql-debuginfo-2023.03.2-1.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/rdkit-devel-2023.03.2-1.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/rdkit-postgresql-2023.03.2-1.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/rdkit-doc-2023.03.2-1.fc39.noarch.rpm Wrote: /builddir/build/RPMS/rdkit-debugsource-2023.03.2-1.fc39.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.Fs7w1W + umask 022 + cd /builddir/build/BUILD + cd rdkit-Release_2023_03_2 + /usr/bin/rm -rf /builddir/build/BUILDROOT/rdkit-2023.03.2-1.fc39.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.sX2YwL + umask 022 + cd /builddir/build/BUILD + rm -rf rdkit-Release_2023_03_2 rdkit-Release_2023_03_2.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild rdkit-2023.03.2-1.fc39.src.rpm Finish: build phase for rdkit-2023.03.2-1.fc39.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1688587310.274239/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-x86_64-1688587310.274239/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-x86_64-1688587310.274239/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/rdkit-2023.03.2-1.fc39.src.rpm) Config(child) 66 minutes 2 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running FedoraReview tool Running: fedora-review --no-colors --prebuilt --rpm-spec --name rdkit --mock-config /var/lib/copr-rpmbuild/results/configs/child.cfg cmd: ['fedora-review', '--no-colors', '--prebuilt', '--rpm-spec', '--name', 'rdkit', '--mock-config', '/var/lib/copr-rpmbuild/results/configs/child.cfg'] cwd: /var/lib/copr-rpmbuild/results rc: 1 stdout: stderr: INFO: Processing local files: rdkit INFO: Getting .spec and .srpm Urls from : Local files in /var/lib/copr-rpmbuild/results INFO: --> SRPM url: file:///var/lib/copr-rpmbuild/results/rdkit-2023.03.2-1.fc39.src.rpm INFO: Using review directory: /var/lib/copr-rpmbuild/results/rdkit INFO: Downloading (Source0): https://github.com/rdkit/rdkit/archive/Release_2023_03_2/rdkit-Release_2023_03_2.tar.gz INFO: Running checks and generating report INFO: Installing built package(s) INFO: Reading configuration from /etc/mock/site-defaults.cfg INFO: Reading configuration from /etc/mock/chroot-aliases.cfg INFO: Reading configuration from /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: Active plugins: Generic, C/C++, Shell-api, Python Unknown argument "-l" for command "repoquery". Add "--help" for more information about the arguments. ERROR: Exception down the road... (logs in /var/lib/copr-rpmbuild/workspace/workdir-m4cdisd6/.cache/fedora-review.log) Fedora review failed err: INFO: Processing local files: rdkit INFO: Getting .spec and .srpm Urls from : Local files in /var/lib/copr-rpmbuild/results INFO: --> SRPM url: file:///var/lib/copr-rpmbuild/results/rdkit-2023.03.2-1.fc39.src.rpm INFO: Using review directory: /var/lib/copr-rpmbuild/results/rdkit INFO: Downloading (Source0): https://github.com/rdkit/rdkit/archive/Release_2023_03_2/rdkit-Release_2023_03_2.tar.gz INFO: Running checks and generating report INFO: Installing built package(s) INFO: Reading configuration from /etc/mock/site-defaults.cfg INFO: Reading configuration from /etc/mock/chroot-aliases.cfg INFO: Reading configuration from /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: Active plugins: Generic, C/C++, Shell-api, Python Unknown argument "-l" for command "repoquery". Add "--help" for more information about the arguments. ERROR: Exception down the road... (logs in /var/lib/copr-rpmbuild/workspace/workdir-m4cdisd6/.cache/fedora-review.log) The build itself will not be marked as failed because of this Running RPMResults tool