%global checkout_date 20200807

%global debug_package %{nil}

Name:           neuroConstruct
Version:        1.7.2
Release:        1%{?dist}
Summary:        Biophysically detailed neuronal modelling in 3D

License:        GPLv2
URL:            http://www.neuroconstruct.org/

# Using the pre-built jar
Source0:        https://github.com/NeuralEnsemble/neuroConstruct/releases/download/v%{version}/neuroConstruct_%{version}.zip

Requires:       java-headless
Requires:       javapackages-filesystem

BuildArch:      noarch


%description
This is neuroConstruct, software for developing 3D networks for biologically realistic neuronal simulations.
Some of the key features of neuroConstruct are:

- neuroConstruct can import morphology files in GENESIS, NEURON, Neurolucida, SWC and MorphML format for inclusion in single cell or network models, or more abstract cells can also be built manually.
- Creation of networks of conductance based neurons positioned in 3D
- Complex connectivity patterns between cell groups can be specified for the networks
- Simulation scripts can be generated for NEURON, GENESIS, MOOSE, PSICS and PyNN based simulators (note: not every project can be generated for every simulator)
- Biophysically realistic cellular mechanisms (synapses/channel mechanisms) can be imported from native script files (*.mod or *.g) or created from templates using ChannelML
- Automatic generation of code to record simulation data and visualisation/analysis of data in neuroConstruct
- Recorded simulation runs can be viewed and managed through the Simulation Browser interface
- A Python based scripting interface can be used to control model generation and execution, allowing multiple simulations to be run for cell and network model optimisation

This package includes the pre-built Jar file along with the necessary dependencies.

%prep
%autosetup -n %{name}_%{version}
# Fix the path
sed -i 's|^export NC_HOME.*|export NC_HOME="%{_javadir}/%{name}/"|' nCenv.sh

%build
# Nothing to do here

%install
# Put stuff in the right place
install -p -m 0644 -D -T %{name}_%{version}.jar %{buildroot}/%{_javadir}/%{name}/%{name}_%{version}.jar

install -p -m 0755 -d %{buildroot}/%{_javadir}/%{name}/jNeuroMLJar/
cp -rv jNeuroMLJar/* %{buildroot}/%{_javadir}/%{name}/jNeuroMLJar/

install -p -m 0755 -d %{buildroot}/%{_javadir}/%{name}/lib/
cp -rv lib/* %{buildroot}/%{_javadir}/%{name}/lib/

install -p -m 0755 -D -T nC.sh %{buildroot}/%{_bindir}/nC.sh
install -p -m 0755 -D -T nCenv.sh %{buildroot}/%{_bindir}/nCenv.sh


%files
%license licence.txt
%{_javadir}/%{name}
%{_bindir}/nC.sh
%{_bindir}/nCenv.sh


%changelog
* Thu Sep 17 2020 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 1.7.2-1
- Initial build