%global jnml_version  0.12.0

%global _description %{expand:\
A single package in Python unifying scripts and modules for reading, writing, \
simulating and analysing NeuroML2/LEMS models.

Documentation is available at https://docs.neuroml.org
}

Name:           python-pyneuroml
Version:        0.7.3
Release:        1%{?dist}
Summary:        Read, write, simulate and analyze NeuroML2/LEMS models

License:        BSD
URL:            https://github.com/NeuroML/pyNeuroML/
Source0:        %{url}/archive/v%{version}/%{name}-%{version}.tar.gz
Patch0:         0001-Use-system-jnml-jar.patch

BuildRequires:  git-core

BuildArch:      noarch

%description
%{_description}

%package -n python3-pyneuroml
Summary:        %{summary}
BuildRequires:  python3-devel
BuildRequires:  python3-setuptools
# Version locked
Requires:       jneuroml => %{jnml_version}-1

%{?python_provide:%python_provide python3-pyNeuroML}
%{?python_provide:%python_provide python3-pyneuroml}

%description -n python3-pyneuroml
%{_description}

# write manually because we want to include the neuron base package also
%package -n python3-pyneuroml+neuron

Summary: Metapackage for python3-pyneuroml: neuron extras
Requires: python3-pyneuroml = %{version}-%{release}
Requires:  neuron

%description -n python3-pyneuroml+neuron
This is a metapackage bringing in neuron extras requires for python3-pyneuroml.
It makes sure the dependencies are installed.


%files -n python3-pyneuroml+neuron
%ghost %{python3_sitelib}/*.dist-info

# https://bugzilla.redhat.com/show_bug.cgi?id=2142632
# so automatic requires/br does not work
%package -n python3-pyneuroml+povray

Summary: Metapackage for python3-pyneuroml: povray extras
Requires: python3-pyneuroml = %{version}-%{release}
Requires:  python3-opencv
BuildRequires:  python3-opencv

%description -n python3-pyneuroml+povray
This is a metapackage bringing in povray extras requires for python3-pyneuroml.
It makes sure the dependencies are installed.


%files -n python3-pyneuroml+povray
%ghost %{python3_sitelib}/*.dist-info

%pyproject_extras_subpkg -n python3-pyneuroml brian

%pyproject_extras_subpkg -n python3-pyneuroml netpyne

%pyproject_extras_subpkg -n python3-pyneuroml hdf5

%pyproject_extras_subpkg -n python3-pyneuroml analysis

%pyproject_extras_subpkg -n python3-pyneuroml tune

%package doc
Summary:    Documentation for pyneuroml

%description doc
%{_description}

%prep
%autosetup -n pyNeuroML-%{version} -S git

# use latest jneuroml that we provide in the COPR
sed -i 's/JNEUROML_VERSION =.*$/JNEUROML_VERSION = "%{jnml_version}"/' pyneuroml/__init__.py

# Comment out to remove /usr/bin/env shebangs
find . -type f -name "*.py" -exec sed -i '/^#![  ]*\/usr\/bin\/env.*$/ d' {} 2>/dev/null ';'

# Correct encoding
sed -i 's/\r$//' examples/test.hoc

# remove exec perm
find examples/ -name "*.sh" -exec chmod -x '{}' \;
find examples/ -name "*.nml" -exec chmod -x '{}' \;

# Remove argparse: part of py3 now
# remove neuromllite req: cyclic dependency
# add inspyred as dep
# remove opencv-python
sed -i -e "/argparse/ d" -e 's/"opencv-python"/""/' -e '/neuromllite>=0.4.1/ d' -e 's/"ppft"/"ppft", "inspyred"/' setup.py

# remove bundled jnml jar
rm -f pyneuroml/lib/*jar -v


%generate_buildrequires
%pyproject_buildrequires -r -x neuron -x hdf5 -x analysis -x tune -x brian -x netpyne
#-x povray: https://bugzilla.redhat.com/show_bug.cgi?id=2142632

%build
%pyproject_wheel

%install
%pyproject_install
%pyproject_save_files pyneuroml

%check
# rely on upstream tests, require lots of data files
%pyproject_check_import

%files -n python3-pyneuroml -f %{pyproject_files}
%license LICENSE.lesser
%doc README.md
%{_bindir}/pynml
%{_bindir}/pynml-channelanalysis
%{_bindir}/pynml-channelml2nml
%{_bindir}/pynml-plotmorph
%{_bindir}/pynml-modchananalysis
%{_bindir}/pynml-povray
%{_bindir}/pynml-plotspikes
%{_bindir}/pynml-sonata
%{_bindir}/pynml-summary
%{_bindir}/pynml-tune
%{_mandir}/man1/pynml*.1*

%files doc
%license LICENSE.lesser
%doc README.md CONTRIBUTING.md
%doc examples

%changelog
* Fri Dec 02 2022 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.7.3-1
- Update to 0.7.3

* Tue Nov 22 2022 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.7.2-2
- Include patch to install all man pages

* Tue Nov 22 2022 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.7.2-1
- Update to latest release

* Tue Jan 04 2022 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.5.20-1
- Update to 0.5.20

* Mon Nov 29 2021 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.5.18-2
- Include patches from upstream

* Thu Nov 11 2021 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.5.18-1
- update to 0.5.18

* Tue Sep 07 2021 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.5.11-2
- Fix build

* Mon Mar 22 2021 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.5.11-1
- Update to latest release

* Tue Mar 02 2021 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.5.9-1
- Update to latest release

* Tue Jan 05 2021 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.5.6-3
- Update to use latest jnml version we provide

* Wed Aug 19 2020 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.5.6-2
- Fix patch

* Fri Aug 07 2020 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.5.6-1
- Update to 0.5.6
- remove kiwisolver version bind
- Use system copy of jneuroml

* Fri Aug 07 2020 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.3.15-2
- Remove argparse requirement

* Fri Aug 07 2020 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.3.15-1
- Update to new release

* Sat Oct 27 2018 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.3.13-1
- Initial build