Warning: Permanently added '54.167.51.53' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/9505275-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64 Version: 1.4 PID: 18988 Logging PID: 18990 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'build_id': 9505275, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '2352b79ff7e983e66623bcc1295c0f4f27f4066a', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/@python/python-in-pulp/python-xbout', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'python-xbout', 'package_version': '0.3.6-6', 'project_dirname': 'python-in-pulp', 'project_name': 'python-in-pulp', 'project_owner': '@python', 'repo_priority': None, 'repos': [{'baseurl': 'https://console.redhat.com/api/pulp-content/public-copr/@python/python-in-pulp/fedora-rawhide-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': '@python/python-in-pulp--frostyx', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': 1, 'submitter': 'frostyx', 'tags': [], 'task_id': '9505275-fedora-rawhide-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/@python/python-in-pulp/python-xbout /var/lib/copr-rpmbuild/workspace/workdir-d367oozo/python-xbout --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/@python/python-in-pulp/python-xbout', '/var/lib/copr-rpmbuild/workspace/workdir-d367oozo/python-xbout', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-d367oozo/python-xbout'... Running: git checkout 2352b79ff7e983e66623bcc1295c0f4f27f4066a -- cmd: ['git', 'checkout', '2352b79ff7e983e66623bcc1295c0f4f27f4066a', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-d367oozo/python-xbout rc: 0 stdout: stderr: Note: switching to '2352b79ff7e983e66623bcc1295c0f4f27f4066a'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 2352b79 automatic import of python-xbout Running: dist-git-client sources cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-d367oozo/python-xbout rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading xbout-0.3.6.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o xbout-0.3.6.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/@python/python-in-pulp/python-xbout/xbout-0.3.6.tar.gz/md5/f4970400bb7c6d2380b222c0bb98302a/xbout-0.3.6.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 4692k 100 4692k 0 0 25.8M 0 --:--:-- --:--:-- --:--:-- 25.8M INFO: Reading stdout from command: md5sum xbout-0.3.6.tar.gz tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-d367oozo/python-xbout/python-xbout.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-d367oozo/python-xbout --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1756533364.710581 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 6.3 starting (python version = 3.13.5, NVR = mock-6.3-1.fc42), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-d367oozo/python-xbout/python-xbout.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-d367oozo/python-xbout --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1756533364.710581 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-d367oozo/python-xbout/python-xbout.spec) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 6.3 INFO: Mock Version: 6.3 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1756533364.710581/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using container image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Tagging container image as mock-bootstrap-1fd90af1-812c-43b7-8c8f-2ce25ee98401 INFO: Checking that 5fd7cde98a42b20c1eeb54bd26e59dc8ee0f1e400933713a63dd571cf8fd884e image matches host's architecture INFO: Copy content of container 5fd7cde98a42b20c1eeb54bd26e59dc8ee0f1e400933713a63dd571cf8fd884e to /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1756533364.710581/root INFO: mounting 5fd7cde98a42b20c1eeb54bd26e59dc8ee0f1e400933713a63dd571cf8fd884e with podman image mount INFO: image 5fd7cde98a42b20c1eeb54bd26e59dc8ee0f1e400933713a63dd571cf8fd884e as /var/lib/containers/storage/overlay/bea370efd1e053defc420152826c8bdce8885f847ce76d164de4f71f92dba958/merged INFO: umounting image 5fd7cde98a42b20c1eeb54bd26e59dc8ee0f1e400933713a63dd571cf8fd884e (/var/lib/containers/storage/overlay/bea370efd1e053defc420152826c8bdce8885f847ce76d164de4f71f92dba958/merged) with podman image umount INFO: Removing image mock-bootstrap-1fd90af1-812c-43b7-8c8f-2ce25ee98401 INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1756533364.710581/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-5.99.92-1.fc44.x86_64 rpm-sequoia-1.9.0-2.fc43.x86_64 dnf5-5.2.16.0-3.fc44.x86_64 dnf5-plugins-5.2.16.0-3.fc44.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: Copr repository 100% | 128.0 B/s | 1.6 KiB | 00m12s fedora 100% | 2.2 KiB/s | 27.3 KiB | 00m12s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash x86_64 5.3.0-2.fc43 fedora 8.4 MiB bzip2 x86_64 1.0.8-21.fc43 fedora 95.3 KiB coreutils x86_64 9.7-5.fc43 fedora 5.4 MiB cpio x86_64 2.15-6.fc43 fedora 1.1 MiB diffutils x86_64 3.12-3.fc43 fedora 1.6 MiB fedora-release-common noarch 44-0.2 fedora 20.4 KiB findutils x86_64 1:4.10.0-6.fc43 fedora 1.8 MiB gawk x86_64 5.3.2-2.fc43 fedora 1.8 MiB glibc-minimal-langpack x86_64 2.42.9000-3.fc44 fedora 0.0 B grep x86_64 3.12-2.fc43 fedora 1.0 MiB gzip x86_64 1.14-1.fc44 fedora 397.8 KiB info x86_64 7.2-6.fc43 fedora 353.9 KiB patch x86_64 2.8-2.fc43 fedora 222.8 KiB redhat-rpm-config noarch 343-13.fc44 fedora 183.2 KiB rpm-build x86_64 5.99.92-1.fc44 copr_base 285.5 KiB sed x86_64 4.9-5.fc43 fedora 857.3 KiB shadow-utils x86_64 2:4.18.0-3.fc43 fedora 3.9 MiB tar x86_64 2:1.35-6.fc43 fedora 2.9 MiB unzip x86_64 6.0-68.fc44 fedora 390.3 KiB util-linux x86_64 2.41.1-16.fc44 fedora 3.5 MiB which x86_64 2.23-3.fc43 fedora 83.5 KiB xz x86_64 1:5.8.1-2.fc43 fedora 1.3 MiB Installing dependencies: add-determinism x86_64 0.6.0-2.fc43 fedora 2.4 MiB alternatives x86_64 1.33-2.fc43 fedora 62.2 KiB ansible-srpm-macros noarch 1-18.1.fc43 fedora 35.7 KiB audit-libs x86_64 4.1.1-2.fc44 copr_base 378.9 KiB binutils x86_64 2.45-3.fc44 fedora 26.5 MiB build-reproducibility-srpm-macros noarch 0.6.0-2.fc43 fedora 735.0 B bzip2-libs x86_64 1.0.8-21.fc43 fedora 80.6 KiB ca-certificates noarch 2025.2.80_v9.0.304-2.fc44 fedora 2.7 MiB coreutils-common x86_64 9.7-5.fc43 fedora 11.3 MiB crypto-policies noarch 20250714-4.gitcd6043a.fc44 fedora 146.9 KiB curl x86_64 8.16.0~rc2-1.fc44 fedora 475.3 KiB cyrus-sasl-lib x86_64 2.1.28-33.fc44 fedora 2.3 MiB debugedit x86_64 5.2-3.fc44 fedora 214.0 KiB dwz x86_64 0.16-2.fc43 fedora 287.1 KiB ed x86_64 1.22.2-1.fc44 fedora 148.1 KiB efi-srpm-macros noarch 6-4.fc43 fedora 40.1 KiB elfutils x86_64 0.193-3.fc43 fedora 2.9 MiB elfutils-debuginfod-client x86_64 0.193-3.fc43 fedora 83.9 KiB elfutils-default-yama-scope noarch 0.193-3.fc43 fedora 1.8 KiB elfutils-libelf x86_64 0.193-3.fc43 fedora 1.2 MiB elfutils-libs x86_64 0.193-3.fc43 fedora 683.4 KiB fedora-gpg-keys noarch 44-0.1 fedora 131.2 KiB fedora-release noarch 44-0.2 fedora 0.0 B fedora-release-identity-basic noarch 44-0.2 fedora 664.0 B fedora-repos noarch 44-0.1 fedora 4.9 KiB fedora-repos-rawhide noarch 44-0.1 fedora 2.2 KiB file x86_64 5.46-7.fc44 copr_base 100.2 KiB file-libs x86_64 5.46-7.fc44 copr_base 11.9 MiB filesystem x86_64 3.18-50.fc43 fedora 112.0 B filesystem-srpm-macros noarch 3.18-50.fc43 fedora 38.2 KiB fonts-srpm-macros noarch 1:2.0.5-23.fc43 fedora 55.8 KiB forge-srpm-macros noarch 0.4.0-3.fc43 fedora 38.9 KiB fpc-srpm-macros noarch 1.3-15.fc43 fedora 144.0 B gap-srpm-macros noarch 1-1.fc44 fedora 2.0 KiB gdb-minimal x86_64 16.3-5.fc44 copr_base 13.3 MiB gdbm-libs x86_64 1:1.23-10.fc43 fedora 129.9 KiB ghc-srpm-macros noarch 1.9.2-3.fc43 fedora 779.0 B glibc x86_64 2.42.9000-3.fc44 fedora 6.7 MiB glibc-common x86_64 2.42.9000-3.fc44 fedora 1.0 MiB glibc-gconv-extra x86_64 2.42.9000-3.fc44 fedora 7.2 MiB gmp x86_64 1:6.3.0-4.fc43 fedora 811.2 KiB gnat-srpm-macros noarch 6-8.fc43 fedora 1.0 KiB gnupg2 x86_64 2.4.8-4.fc43 fedora 6.5 MiB gnupg2-dirmngr x86_64 2.4.8-4.fc43 fedora 618.4 KiB gnupg2-gpg-agent x86_64 2.4.8-4.fc43 fedora 671.4 KiB gnupg2-gpgconf x86_64 2.4.8-4.fc43 fedora 250.0 KiB gnupg2-keyboxd x86_64 2.4.8-4.fc43 fedora 201.4 KiB gnupg2-verify x86_64 2.4.8-4.fc43 fedora 348.5 KiB gnutls x86_64 3.8.10-3.fc43 fedora 3.8 MiB go-srpm-macros noarch 3.7.0-4.fc43 fedora 61.6 KiB gpgverify noarch 2.2-3.fc43 fedora 8.7 KiB ima-evm-utils-libs x86_64 1.6.2-6.fc43 fedora 60.7 KiB jansson x86_64 2.14-3.fc43 fedora 89.1 KiB java-srpm-macros noarch 1-7.fc43 fedora 870.0 B json-c x86_64 0.18-7.fc43 fedora 82.7 KiB kernel-srpm-macros noarch 1.0-27.fc43 fedora 1.9 KiB keyutils-libs x86_64 1.6.3-6.fc43 fedora 54.3 KiB krb5-libs x86_64 1.21.3-7.fc43 fedora 2.3 MiB libacl x86_64 2.3.2-4.fc43 fedora 35.9 KiB libarchive x86_64 3.8.1-3.fc43 fedora 951.1 KiB libassuan x86_64 2.5.7-4.fc43 fedora 163.8 KiB libattr x86_64 2.5.2-6.fc43 fedora 24.4 KiB libblkid x86_64 2.41.1-16.fc44 fedora 262.4 KiB libbrotli x86_64 1.1.0-9.fc44 copr_base 833.3 KiB libcap x86_64 2.76-3.fc44 fedora 209.1 KiB libcap-ng x86_64 0.8.5-7.fc44 copr_base 68.9 KiB libcom_err x86_64 1.47.3-2.fc43 fedora 63.1 KiB libcurl x86_64 8.16.0~rc2-1.fc44 fedora 919.7 KiB libeconf x86_64 0.7.9-2.fc43 fedora 64.9 KiB libevent x86_64 2.1.12-16.fc43 fedora 883.1 KiB libfdisk x86_64 2.41.1-16.fc44 fedora 380.4 KiB libffi x86_64 3.5.1-2.fc43 fedora 83.6 KiB libfsverity x86_64 1.6-3.fc43 fedora 28.5 KiB libgcc x86_64 15.2.1-1.fc44.1 fedora 266.6 KiB libgcrypt x86_64 1.11.1-2.fc43 fedora 1.6 MiB libgomp x86_64 15.2.1-1.fc44.1 fedora 541.1 KiB libgpg-error x86_64 1.55-2.fc43 fedora 915.3 KiB libidn2 x86_64 2.3.8-2.fc43 fedora 552.5 KiB libksba x86_64 1.6.7-4.fc43 fedora 398.5 KiB liblastlog2 x86_64 2.41.1-16.fc44 fedora 33.9 KiB libmount x86_64 2.41.1-16.fc44 fedora 372.7 KiB libnghttp2 x86_64 1.66.0-2.fc43 fedora 162.2 KiB libpkgconf x86_64 2.3.0-3.fc43 fedora 78.1 KiB libpsl x86_64 0.21.5-6.fc43 fedora 76.4 KiB libselinux x86_64 3.9-4.fc44 copr_base 193.1 KiB libsemanage x86_64 3.9-3.fc44 copr_base 308.5 KiB libsepol x86_64 3.9-2.fc43 fedora 822.0 KiB libsmartcols x86_64 2.41.1-16.fc44 fedora 180.5 KiB libssh x86_64 0.11.2-2.fc43 fedora 566.7 KiB libssh-config noarch 0.11.2-2.fc43 fedora 277.0 B libstdc++ x86_64 15.2.1-1.fc44.1 fedora 2.8 MiB libtasn1 x86_64 4.20.0-2.fc43 fedora 176.3 KiB libtool-ltdl x86_64 2.5.4-7.fc43 fedora 70.1 KiB libunistring x86_64 1.1-10.fc43 fedora 1.7 MiB libusb1 x86_64 1.0.29-4.fc44 fedora 171.3 KiB libuuid x86_64 2.41.1-16.fc44 fedora 37.4 KiB libverto x86_64 0.3.2-11.fc43 fedora 25.4 KiB libxcrypt x86_64 4.4.38-8.fc43 fedora 284.5 KiB libxml2 x86_64 2.12.10-4.fc44 copr_base 1.7 MiB libzstd x86_64 1.5.7-2.fc43 fedora 799.9 KiB lua-libs x86_64 5.4.8-2.fc43 fedora 280.8 KiB lua-srpm-macros noarch 1-16.fc43 fedora 1.3 KiB lz4-libs x86_64 1.10.0-3.fc43 fedora 161.4 KiB mpfr x86_64 4.2.2-2.fc43 fedora 832.8 KiB ncurses-base noarch 6.5-7.20250614.fc43 fedora 328.1 KiB ncurses-libs x86_64 6.5-7.20250614.fc43 fedora 946.3 KiB nettle x86_64 3.10.1-2.fc43 fedora 790.6 KiB npth x86_64 1.8-3.fc43 fedora 49.6 KiB ocaml-srpm-macros noarch 11-2.fc43 fedora 1.9 KiB openblas-srpm-macros noarch 2-20.fc43 fedora 112.0 B openldap x86_64 2.6.10-3.fc43 fedora 655.8 KiB openssl-libs x86_64 1:3.5.1-3.fc44 fedora 9.2 MiB p11-kit x86_64 0.25.5-9.fc43 fedora 2.2 MiB p11-kit-trust x86_64 0.25.5-9.fc43 fedora 395.5 KiB package-notes-srpm-macros noarch 0.5-14.fc43 fedora 1.6 KiB pam-libs x86_64 1.7.1-3.fc43 fedora 126.8 KiB pcre2 x86_64 10.45-1.fc43.1 fedora 697.7 KiB pcre2-syntax noarch 10.45-1.fc43.1 fedora 273.9 KiB perl-srpm-macros noarch 1-60.fc43 fedora 861.0 B pkgconf x86_64 2.3.0-3.fc43 fedora 88.5 KiB pkgconf-m4 noarch 2.3.0-3.fc43 fedora 14.4 KiB pkgconf-pkg-config x86_64 2.3.0-3.fc43 fedora 989.0 B popt x86_64 1.19-9.fc43 fedora 132.8 KiB publicsuffix-list-dafsa noarch 20250616-2.fc43 fedora 69.1 KiB pyproject-srpm-macros noarch 1.18.3-2.fc43 fedora 1.9 KiB python-srpm-macros noarch 3.14-7.fc44 fedora 51.5 KiB qt5-srpm-macros noarch 5.15.17-2.fc43 fedora 500.0 B qt6-srpm-macros noarch 6.9.1-2.fc43 fedora 464.0 B readline x86_64 8.3-2.fc43 fedora 511.7 KiB rpm x86_64 5.99.92-1.fc44 copr_base 3.0 MiB rpm-build-libs x86_64 5.99.92-1.fc44 copr_base 272.4 KiB rpm-libs x86_64 5.99.92-1.fc44 copr_base 933.7 KiB rpm-sequoia x86_64 1.9.0-2.fc43 fedora 2.5 MiB rpm-sign-libs x86_64 5.99.92-1.fc44 copr_base 39.7 KiB rust-srpm-macros noarch 26.4-1.fc44 fedora 4.8 KiB setup noarch 2.15.0-26.fc43 fedora 725.0 KiB sqlite-libs x86_64 3.50.2-2.fc43 fedora 1.5 MiB systemd-libs x86_64 258~rc3-2.fc44 fedora 2.3 MiB systemd-standalone-sysusers x86_64 258~rc3-2.fc44 fedora 293.5 KiB tpm2-tss x86_64 4.1.3-8.fc43 fedora 1.6 MiB tree-sitter-srpm-macros noarch 0.4.2-1.fc43 fedora 8.3 KiB util-linux-core x86_64 2.41.1-16.fc44 fedora 1.5 MiB xxhash-libs x86_64 0.8.3-3.fc43 fedora 90.2 KiB xz-libs x86_64 1:5.8.1-2.fc43 fedora 217.8 KiB zig-srpm-macros noarch 1-5.fc43 fedora 1.1 KiB zip x86_64 3.0-44.fc43 fedora 694.5 KiB zlib-ng-compat x86_64 2.2.5-1.fc43 fedora 137.6 KiB zstd x86_64 1.5.7-2.fc43 fedora 1.7 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 170 packages Total size of inbound packages is 59 MiB. Need to download 0 B. After this operation, 198 MiB extra will be used (install 198 MiB, remove 0 B). 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B | 00m00s >>> Already downloaded [170/170] libbrotli-0:1.1.0-9.fc44.x86_ 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [170/170] Total 100% | 0.0 B/s | 0.0 B | 00m00s Running transaction Importing OpenPGP key 0x6D9F90A6: UserID : "Fedora (44) " Fingerprint: 36F612DCF27F7D1A48A835E4DBFCF71C6D9F90A6 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-44-primary The key was successfully imported. Importing OpenPGP key 0x6D9F90A6: UserID : "Fedora (44) " Fingerprint: 36F612DCF27F7D1A48A835E4DBFCF71C6D9F90A6 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-44-primary The key was successfully imported. Importing OpenPGP key 0x31645531: UserID : "Fedora (43) " Fingerprint: C6E7F081CF80E13146676E88829B606631645531 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-43-primary The key was successfully imported. Importing OpenPGP key 0xF577861E: UserID : "Fedora (45) " Fingerprint: 4F50A6114CD5C6976A7F1179655A4B02F577861E From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-45-primary The key was successfully imported. [ 1/172] Verify package files 100% | 762.0 B/s | 170.0 B | 00m00s >>> Running %pretrans scriptlet: filesystem-0:3.18-50.fc43.x86_64 >>> Finished %pretrans scriptlet: filesystem-0:3.18-50.fc43.x86_64 >>> [RPM] /var/lib/mock/fedora-rawhide-x86_64-1756533364.710581/root/var/cache/d [ 2/172] Prepare transaction 100% | 4.0 KiB/s | 170.0 B | 00m00s [ 3/172] Installing libgcc-0:15.2.1-1. 100% | 262.0 MiB/s | 268.3 KiB | 00m00s [ 4/172] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 5/172] Installing publicsuffix-list- 100% | 0.0 B/s | 69.8 KiB | 00m00s [ 6/172] Installing fedora-release-ide 100% | 0.0 B/s | 920.0 B | 00m00s [ 7/172] Installing fedora-repos-rawhi 100% | 0.0 B/s | 2.4 KiB | 00m00s [ 8/172] Installing fedora-gpg-keys-0: 100% | 43.7 MiB/s | 179.0 KiB | 00m00s [ 9/172] Installing fedora-repos-0:44- 100% | 0.0 B/s | 5.7 KiB | 00m00s [ 10/172] Installing fedora-release-com 100% | 24.2 MiB/s | 24.8 KiB | 00m00s [ 11/172] Installing fedora-release-0:4 100% | 17.3 KiB/s | 124.0 B | 00m00s >>> Running sysusers scriptlet: setup-0:2.15.0-26.fc43.noarch >>> Finished sysusers scriptlet: setup-0:2.15.0-26.fc43.noarch >>> Scriptlet output: >>> Creating group 'adm' with GID 4. >>> Creating group 'audio' with GID 63. >>> Creating group 'cdrom' with GID 11. >>> Creating group 'clock' with GID 103. >>> Creating group 'dialout' with GID 18. >>> Creating group 'disk' with GID 6. >>> Creating group 'floppy' with GID 19. >>> Creating group 'ftp' with GID 50. >>> Creating group 'games' with GID 20. >>> Creating group 'input' with GID 104. >>> Creating group 'kmem' with GID 9. >>> Creating group 'kvm' with GID 36. >>> Creating group 'lock' with GID 54. >>> Creating group 'lp' with GID 7. >>> Creating group 'mail' with GID 12. >>> Creating group 'man' with GID 15. >>> Creating group 'mem' with GID 8. >>> Creating group 'nobody' with GID 65534. >>> Creating group 'render' with GID 105. >>> Creating group 'root' with GID 0. >>> Creating group 'sgx' with GID 106. >>> Creating group 'sys' with GID 3. >>> Creating group 'tape' with GID 33. >>> Creating group 'tty' with GID 5. >>> Creating group 'users' with GID 100. >>> Creating group 'utmp' with GID 22. >>> Creating group 'video' with GID 39. >>> Creating group 'wheel' with GID 10. >>> Creating user 'adm' (adm) with UID 3 and GID 4. >>> Creating group 'bin' with GID 1. >>> Creating user 'bin' (bin) with UID 1 and GID 1. >>> Creating group 'daemon' with GID 2. >>> Creating user 'daemon' (daemon) with UID 2 and GID 2. >>> Creating user 'ftp' (FTP User) with UID 14 and GID 50. >>> Creating user 'games' (games) with UID 12 and GID 100. >>> Creating user 'halt' (halt) with UID 7 and GID 0. >>> Creating user 'lp' (lp) with UID 4 and GID 7. >>> Creating user 'mail' (mail) with UID 8 and GID 12. >>> Creating user 'nobody' (Kernel Overflow User) with UID 65534 and GID 65534. >>> Creating user 'operator' (operator) with UID 11 and GID 0. >>> Creating user 'root' (Super User) with UID 0 and GID 0. >>> Creating user 'shutdown' (shutdown) with UID 6 and GID 0. >>> Creating user 'sync' (sync) with UID 5 and GID 0. >>> [ 12/172] Installing setup-0:2.15.0-26. 100% | 51.0 MiB/s | 730.6 KiB | 00m00s >>> [RPM] /etc/hosts created as /etc/hosts.rpmnew [ 13/172] Installing filesystem-0:3.18- 100% | 2.9 MiB/s | 212.8 KiB | 00m00s [ 14/172] Installing pkgconf-m4-0:2.3.0 100% | 0.0 B/s | 14.8 KiB | 00m00s [ 15/172] Installing pcre2-syntax-0:10. 100% | 269.9 MiB/s | 276.4 KiB | 00m00s [ 16/172] Installing ncurses-base-0:6.5 100% | 86.3 MiB/s | 353.5 KiB | 00m00s [ 17/172] Installing bash-0:5.3.0-2.fc4 100% | 255.5 MiB/s | 8.4 MiB | 00m00s [ 18/172] Installing glibc-common-0:2.4 100% | 63.8 MiB/s | 1.0 MiB | 00m00s [ 19/172] Installing glibc-gconv-extra- 100% | 292.4 MiB/s | 7.3 MiB | 00m00s [ 20/172] Installing glibc-0:2.42.9000- 100% | 186.2 MiB/s | 6.7 MiB | 00m00s [ 21/172] Installing ncurses-libs-0:6.5 100% | 310.1 MiB/s | 952.8 KiB | 00m00s [ 22/172] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 23/172] Installing zlib-ng-compat-0:2 100% | 135.2 MiB/s | 138.4 KiB | 00m00s [ 24/172] Installing bzip2-libs-0:1.0.8 100% | 79.8 MiB/s | 81.7 KiB | 00m00s [ 25/172] Installing libgpg-error-0:1.5 100% | 60.0 MiB/s | 921.1 KiB | 00m00s [ 26/172] Installing libstdc++-0:15.2.1 100% | 406.3 MiB/s | 2.8 MiB | 00m00s [ 27/172] Installing xz-libs-1:5.8.1-2. 100% | 213.8 MiB/s | 218.9 KiB | 00m00s [ 28/172] Installing libassuan-0:2.5.7- 100% | 161.7 MiB/s | 165.6 KiB | 00m00s [ 29/172] Installing libgcrypt-0:1.11.1 100% | 393.8 MiB/s | 1.6 MiB | 00m00s [ 30/172] Installing readline-0:8.3-2.f 100% | 250.9 MiB/s | 513.9 KiB | 00m00s [ 31/172] Installing gmp-1:6.3.0-4.fc43 100% | 397.2 MiB/s | 813.5 KiB | 00m00s [ 32/172] Installing libuuid-0:2.41.1-1 100% | 0.0 B/s | 38.5 KiB | 00m00s [ 33/172] Installing popt-0:1.19-9.fc43 100% | 68.1 MiB/s | 139.4 KiB | 00m00s [ 34/172] Installing npth-0:1.8-3.fc43. 100% | 0.0 B/s | 50.7 KiB | 00m00s [ 35/172] Installing libblkid-0:2.41.1- 100% | 257.3 MiB/s | 263.5 KiB | 00m00s [ 36/172] Installing libxcrypt-0:4.4.38 100% | 280.4 MiB/s | 287.2 KiB | 00m00s [ 37/172] Installing libzstd-0:1.5.7-2. 100% | 391.2 MiB/s | 801.1 KiB | 00m00s [ 38/172] Installing elfutils-libelf-0: 100% | 388.8 MiB/s | 1.2 MiB | 00m00s [ 39/172] Installing sqlite-libs-0:3.50 100% | 379.1 MiB/s | 1.5 MiB | 00m00s [ 40/172] Installing gnupg2-gpgconf-0:2 100% | 20.5 MiB/s | 252.0 KiB | 00m00s [ 41/172] Installing libattr-0:2.5.2-6. 100% | 0.0 B/s | 25.4 KiB | 00m00s [ 42/172] Installing libacl-0:2.3.2-4.f 100% | 0.0 B/s | 36.8 KiB | 00m00s [ 43/172] Installing libtasn1-0:4.20.0- 100% | 173.9 MiB/s | 178.1 KiB | 00m00s [ 44/172] Installing libunistring-0:1.1 100% | 345.3 MiB/s | 1.7 MiB | 00m00s [ 45/172] Installing libidn2-0:2.3.8-2. 100% | 60.6 MiB/s | 558.7 KiB | 00m00s [ 46/172] Installing crypto-policies-0: 100% | 42.0 MiB/s | 172.0 KiB | 00m00s [ 47/172] Installing dwz-0:0.16-2.fc43. 100% | 21.7 MiB/s | 288.5 KiB | 00m00s [ 48/172] Installing gnupg2-verify-0:2. 100% | 28.5 MiB/s | 349.9 KiB | 00m00s [ 49/172] Installing mpfr-0:4.2.2-2.fc4 100% | 271.6 MiB/s | 834.4 KiB | 00m00s [ 50/172] Installing gawk-0:5.3.2-2.fc4 100% | 106.8 MiB/s | 1.8 MiB | 00m00s [ 51/172] Installing libksba-0:1.6.7-4. 100% | 391.7 MiB/s | 401.1 KiB | 00m00s [ 52/172] Installing unzip-0:6.0-68.fc4 100% | 32.1 MiB/s | 393.8 KiB | 00m00s [ 53/172] Installing file-libs-0:5.46-7 100% | 658.7 MiB/s | 11.9 MiB | 00m00s [ 54/172] Installing file-0:5.46-7.fc44 100% | 9.0 MiB/s | 101.7 KiB | 00m00s [ 55/172] Installing pcre2-0:10.45-1.fc 100% | 341.4 MiB/s | 699.1 KiB | 00m00s [ 56/172] Installing grep-0:3.12-2.fc43 100% | 66.8 MiB/s | 1.0 MiB | 00m00s [ 57/172] Installing xz-1:5.8.1-2.fc43. 100% | 78.3 MiB/s | 1.3 MiB | 00m00s [ 58/172] Installing libeconf-0:0.7.9-2 100% | 65.0 MiB/s | 66.5 KiB | 00m00s [ 59/172] Installing lz4-libs-0:1.10.0- 100% | 158.6 MiB/s | 162.5 KiB | 00m00s [ 60/172] Installing json-c-0:0.18-7.fc 100% | 82.0 MiB/s | 84.0 KiB | 00m00s [ 61/172] Installing libsepol-0:3.9-2.f 100% | 401.8 MiB/s | 822.9 KiB | 00m00s [ 62/172] Installing libselinux-0:3.9-4 100% | 189.8 MiB/s | 194.4 KiB | 00m00s [ 63/172] Installing sed-0:4.9-5.fc43.x 100% | 56.3 MiB/s | 865.5 KiB | 00m00s [ 64/172] Installing findutils-1:4.10.0 100% | 116.1 MiB/s | 1.9 MiB | 00m00s [ 65/172] Installing libmount-0:2.41.1- 100% | 364.9 MiB/s | 373.7 KiB | 00m00s [ 66/172] Installing libsmartcols-0:2.4 100% | 177.3 MiB/s | 181.6 KiB | 00m00s [ 67/172] Installing libcap-ng-0:0.8.5- 100% | 69.2 MiB/s | 70.8 KiB | 00m00s [ 68/172] Installing audit-libs-0:4.1.1 100% | 372.6 MiB/s | 381.5 KiB | 00m00s [ 69/172] Installing pam-libs-0:1.7.1-3 100% | 126.0 MiB/s | 129.0 KiB | 00m00s [ 70/172] Installing libcap-0:2.76-3.fc 100% | 16.1 MiB/s | 214.3 KiB | 00m00s [ 71/172] Installing systemd-libs-0:258 100% | 389.4 MiB/s | 2.3 MiB | 00m00s [ 72/172] Installing alternatives-0:1.3 100% | 5.7 MiB/s | 63.8 KiB | 00m00s [ 73/172] Installing libffi-0:3.5.1-2.f 100% | 83.0 MiB/s | 85.0 KiB | 00m00s [ 74/172] Installing p11-kit-0:0.25.5-9 100% | 121.4 MiB/s | 2.2 MiB | 00m00s [ 75/172] Installing p11-kit-trust-0:0. 100% | 19.4 MiB/s | 397.1 KiB | 00m00s [ 76/172] Installing lua-libs-0:5.4.8-2 100% | 137.6 MiB/s | 281.9 KiB | 00m00s [ 77/172] Installing util-linux-core-0: 100% | 82.2 MiB/s | 1.5 MiB | 00m00s [ 78/172] Installing libusb1-0:1.0.29-4 100% | 168.9 MiB/s | 172.9 KiB | 00m00s [ 79/172] Installing systemd-standalone 100% | 22.1 MiB/s | 294.1 KiB | 00m00s [ 80/172] Installing libsemanage-0:3.9- 100% | 151.5 MiB/s | 310.2 KiB | 00m00s [ 81/172] Installing tar-2:1.35-6.fc43. 100% | 147.9 MiB/s | 3.0 MiB | 00m00s [ 82/172] Installing zstd-0:1.5.7-2.fc4 100% | 106.9 MiB/s | 1.7 MiB | 00m00s [ 83/172] Installing zip-0:3.0-44.fc43. 100% | 48.7 MiB/s | 698.4 KiB | 00m00s [ 84/172] Installing gnupg2-keyboxd-0:2 100% | 28.3 MiB/s | 202.7 KiB | 00m00s [ 85/172] Installing libpsl-0:0.21.5-6. 100% | 75.7 MiB/s | 77.5 KiB | 00m00s [ 86/172] Installing liblastlog2-0:2.41 100% | 7.0 MiB/s | 36.0 KiB | 00m00s [ 87/172] Installing libfdisk-0:2.41.1- 100% | 186.3 MiB/s | 381.5 KiB | 00m00s [ 88/172] Installing nettle-0:3.10.1-2. 100% | 258.4 MiB/s | 793.7 KiB | 00m00s [ 89/172] Installing gnutls-0:3.8.10-3. 100% | 349.0 MiB/s | 3.8 MiB | 00m00s [ 90/172] Installing libxml2-0:2.12.10- 100% | 94.7 MiB/s | 1.7 MiB | 00m00s [ 91/172] Installing bzip2-0:1.0.8-21.f 100% | 7.5 MiB/s | 99.8 KiB | 00m00s [ 92/172] Installing add-determinism-0: 100% | 128.6 MiB/s | 2.4 MiB | 00m00s [ 93/172] Installing build-reproducibil 100% | 0.0 B/s | 1.0 KiB | 00m00s [ 94/172] Installing cpio-0:2.15-6.fc43 100% | 68.7 MiB/s | 1.1 MiB | 00m00s [ 95/172] Installing diffutils-0:3.12-3 100% | 91.8 MiB/s | 1.6 MiB | 00m00s [ 96/172] Installing ed-0:1.22.2-1.fc44 100% | 11.3 MiB/s | 150.4 KiB | 00m00s [ 97/172] Installing patch-0:2.8-2.fc43 100% | 16.9 MiB/s | 224.3 KiB | 00m00s [ 98/172] Installing jansson-0:2.14-3.f 100% | 88.3 MiB/s | 90.5 KiB | 00m00s [ 99/172] Installing libgomp-0:15.2.1-1 100% | 264.9 MiB/s | 542.5 KiB | 00m00s [100/172] Installing libpkgconf-0:2.3.0 100% | 77.4 MiB/s | 79.2 KiB | 00m00s [101/172] Installing pkgconf-0:2.3.0-3. 100% | 6.8 MiB/s | 91.0 KiB | 00m00s [102/172] Installing pkgconf-pkg-config 100% | 147.8 KiB/s | 1.8 KiB | 00m00s [103/172] Installing libtool-ltdl-0:2.5 100% | 69.6 MiB/s | 71.2 KiB | 00m00s [104/172] Installing gdbm-libs-1:1.23-1 100% | 128.5 MiB/s | 131.6 KiB | 00m00s [105/172] Installing cyrus-sasl-lib-0:2 100% | 127.8 MiB/s | 2.3 MiB | 00m00s [106/172] Installing libnghttp2-0:1.66. 100% | 159.5 MiB/s | 163.3 KiB | 00m00s [107/172] Installing keyutils-libs-0:1. 100% | 54.4 MiB/s | 55.7 KiB | 00m00s [108/172] Installing libcom_err-0:1.47. 100% | 0.0 B/s | 64.2 KiB | 00m00s [109/172] Installing libverto-0:0.3.2-1 100% | 26.6 MiB/s | 27.2 KiB | 00m00s [110/172] Installing xxhash-libs-0:0.8. 100% | 89.4 MiB/s | 91.6 KiB | 00m00s [111/172] Installing libbrotli-0:1.1.0- 100% | 272.0 MiB/s | 835.6 KiB | 00m00s [112/172] Installing filesystem-srpm-ma 100% | 0.0 B/s | 38.9 KiB | 00m00s [113/172] Installing elfutils-default-y 100% | 408.6 KiB/s | 2.0 KiB | 00m00s [114/172] Installing elfutils-libs-0:0. 100% | 223.1 MiB/s | 685.2 KiB | 00m00s [115/172] Installing coreutils-common-0 100% | 376.4 MiB/s | 11.3 MiB | 00m00s [116/172] Installing openssl-libs-1:3.5 100% | 384.2 MiB/s | 9.2 MiB | 00m00s [117/172] Installing coreutils-0:9.7-5. 100% | 155.6 MiB/s | 5.4 MiB | 00m00s [118/172] Installing ca-certificates-0: 100% | 2.1 MiB/s | 2.5 MiB | 00m01s [119/172] Installing libarchive-0:3.8.1 100% | 232.7 MiB/s | 953.1 KiB | 00m00s [120/172] Installing krb5-libs-0:1.21.3 100% | 152.8 MiB/s | 2.3 MiB | 00m00s >>> Running sysusers scriptlet: tpm2-tss-0:4.1.3-8.fc43.x86_64 >>> Finished sysusers scriptlet: tpm2-tss-0:4.1.3-8.fc43.x86_64 >>> Scriptlet output: >>> Creating group 'tss' with GID 59. >>> Creating user 'tss' (Account used for TPM access) with UID 59 and GID 59. >>> [121/172] Installing tpm2-tss-0:4.1.3-8 100% | 262.0 MiB/s | 1.6 MiB | 00m00s [122/172] Installing ima-evm-utils-libs 100% | 60.5 MiB/s | 62.0 KiB | 00m00s [123/172] Installing gnupg2-gpg-agent-0 100% | 30.0 MiB/s | 675.4 KiB | 00m00s [124/172] Installing libssh-0:0.11.2-2. 100% | 277.7 MiB/s | 568.7 KiB | 00m00s [125/172] Installing gzip-0:1.14-1.fc44 100% | 30.3 MiB/s | 403.3 KiB | 00m00s [126/172] Installing rpm-sequoia-0:1.9. 100% | 354.1 MiB/s | 2.5 MiB | 00m00s [127/172] Installing rpm-libs-0:5.99.92 100% | 304.4 MiB/s | 935.3 KiB | 00m00s [128/172] Installing libfsverity-0:1.6- 100% | 0.0 B/s | 29.5 KiB | 00m00s [129/172] Installing libevent-0:2.1.12- 100% | 288.7 MiB/s | 886.8 KiB | 00m00s [130/172] Installing openldap-0:2.6.10- 100% | 214.7 MiB/s | 659.6 KiB | 00m00s [131/172] Installing libcurl-0:8.16.0~r 100% | 299.7 MiB/s | 920.8 KiB | 00m00s [132/172] Installing elfutils-debuginfo 100% | 6.5 MiB/s | 86.2 KiB | 00m00s [133/172] Installing elfutils-0:0.193-3 100% | 153.6 MiB/s | 2.9 MiB | 00m00s [134/172] Installing binutils-0:2.45-3. 100% | 323.7 MiB/s | 26.5 MiB | 00m00s [135/172] Installing gdb-minimal-0:16.3 100% | 276.2 MiB/s | 13.3 MiB | 00m00s [136/172] Installing debugedit-0:5.2-3. 100% | 16.3 MiB/s | 217.3 KiB | 00m00s [137/172] Installing curl-0:8.16.0~rc2- 100% | 21.2 MiB/s | 478.1 KiB | 00m00s [138/172] Installing rpm-0:5.99.92-1.fc 100% | 73.3 MiB/s | 2.5 MiB | 00m00s [139/172] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.1 KiB | 00m00s [140/172] Installing java-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [141/172] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [142/172] Installing tree-sitter-srpm-m 100% | 0.0 B/s | 9.3 KiB | 00m00s [143/172] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.7 KiB | 00m00s [144/172] Installing gnupg2-dirmngr-0:2 100% | 28.9 MiB/s | 621.1 KiB | 00m00s [145/172] Installing gnupg2-0:2.4.8-4.f 100% | 211.3 MiB/s | 6.6 MiB | 00m00s [146/172] Installing rpm-sign-libs-0:5. 100% | 39.6 MiB/s | 40.6 KiB | 00m00s [147/172] Installing rpm-build-libs-0:5 100% | 266.8 MiB/s | 273.2 KiB | 00m00s [148/172] Installing gpgverify-0:2.2-3. 100% | 0.0 B/s | 9.4 KiB | 00m00s [149/172] Installing rust-srpm-macros-0 100% | 0.0 B/s | 5.6 KiB | 00m00s [150/172] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 740.0 B | 00m00s [151/172] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [152/172] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [153/172] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s [154/172] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [155/172] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.1 KiB | 00m00s [156/172] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [157/172] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [158/172] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [159/172] Installing gap-srpm-macros-0: 100% | 0.0 B/s | 2.6 KiB | 00m00s [160/172] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [161/172] Installing ansible-srpm-macro 100% | 0.0 B/s | 36.2 KiB | 00m00s [162/172] Installing rpm-build-0:5.99.9 100% | 19.2 MiB/s | 294.3 KiB | 00m00s [163/172] Installing pyproject-srpm-mac 100% | 2.4 MiB/s | 2.5 KiB | 00m00s [164/172] Installing redhat-rpm-config- 100% | 92.5 MiB/s | 189.4 KiB | 00m00s [165/172] Installing forge-srpm-macros- 100% | 39.3 MiB/s | 40.3 KiB | 00m00s [166/172] Installing fonts-srpm-macros- 100% | 55.7 MiB/s | 57.0 KiB | 00m00s [167/172] Installing go-srpm-macros-0:3 100% | 61.3 MiB/s | 62.7 KiB | 00m00s [168/172] Installing python-srpm-macros 100% | 51.6 MiB/s | 52.8 KiB | 00m00s [169/172] Installing which-0:2.23-3.fc4 100% | 6.0 MiB/s | 85.7 KiB | 00m00s [170/172] Installing util-linux-0:2.41. 100% | 96.5 MiB/s | 3.6 MiB | 00m00s [171/172] Installing shadow-utils-2:4.1 100% | 132.3 MiB/s | 4.0 MiB | 00m00s [172/172] Installing info-0:7.2-6.fc43. 100% | 231.9 KiB/s | 354.3 KiB | 00m02s Warning: skipped OpenPGP checks for 14 packages from repository: copr_base Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.6.0-2.fc43.x86_64 alternatives-1.33-2.fc43.x86_64 ansible-srpm-macros-1-18.1.fc43.noarch audit-libs-4.1.1-2.fc44.x86_64 bash-5.3.0-2.fc43.x86_64 binutils-2.45-3.fc44.x86_64 build-reproducibility-srpm-macros-0.6.0-2.fc43.noarch bzip2-1.0.8-21.fc43.x86_64 bzip2-libs-1.0.8-21.fc43.x86_64 ca-certificates-2025.2.80_v9.0.304-2.fc44.noarch coreutils-9.7-5.fc43.x86_64 coreutils-common-9.7-5.fc43.x86_64 cpio-2.15-6.fc43.x86_64 crypto-policies-20250714-4.gitcd6043a.fc44.noarch curl-8.16.0~rc2-1.fc44.x86_64 cyrus-sasl-lib-2.1.28-33.fc44.x86_64 debugedit-5.2-3.fc44.x86_64 diffutils-3.12-3.fc43.x86_64 dwz-0.16-2.fc43.x86_64 ed-1.22.2-1.fc44.x86_64 efi-srpm-macros-6-4.fc43.noarch elfutils-0.193-3.fc43.x86_64 elfutils-debuginfod-client-0.193-3.fc43.x86_64 elfutils-default-yama-scope-0.193-3.fc43.noarch elfutils-libelf-0.193-3.fc43.x86_64 elfutils-libs-0.193-3.fc43.x86_64 fedora-gpg-keys-44-0.1.noarch fedora-release-44-0.2.noarch fedora-release-common-44-0.2.noarch fedora-release-identity-basic-44-0.2.noarch fedora-repos-44-0.1.noarch fedora-repos-rawhide-44-0.1.noarch file-5.46-7.fc44.x86_64 file-libs-5.46-7.fc44.x86_64 filesystem-3.18-50.fc43.x86_64 filesystem-srpm-macros-3.18-50.fc43.noarch findutils-4.10.0-6.fc43.x86_64 fonts-srpm-macros-2.0.5-23.fc43.noarch forge-srpm-macros-0.4.0-3.fc43.noarch fpc-srpm-macros-1.3-15.fc43.noarch gap-srpm-macros-1-1.fc44.noarch gawk-5.3.2-2.fc43.x86_64 gdb-minimal-16.3-5.fc44.x86_64 gdbm-libs-1.23-10.fc43.x86_64 ghc-srpm-macros-1.9.2-3.fc43.noarch glibc-2.42.9000-3.fc44.x86_64 glibc-common-2.42.9000-3.fc44.x86_64 glibc-gconv-extra-2.42.9000-3.fc44.x86_64 glibc-minimal-langpack-2.42.9000-3.fc44.x86_64 gmp-6.3.0-4.fc43.x86_64 gnat-srpm-macros-6-8.fc43.noarch gnupg2-2.4.8-4.fc43.x86_64 gnupg2-dirmngr-2.4.8-4.fc43.x86_64 gnupg2-gpg-agent-2.4.8-4.fc43.x86_64 gnupg2-gpgconf-2.4.8-4.fc43.x86_64 gnupg2-keyboxd-2.4.8-4.fc43.x86_64 gnupg2-verify-2.4.8-4.fc43.x86_64 gnutls-3.8.10-3.fc43.x86_64 go-srpm-macros-3.7.0-4.fc43.noarch gpg-pubkey-36f612dcf27f7d1a48a835e4dbfcf71c6d9f90a6-6786af3b gpg-pubkey-4f50a6114cd5c6976a7f1179655a4b02f577861e-6888bc98 gpg-pubkey-c6e7f081cf80e13146676e88829b606631645531-66b6dccf gpgverify-2.2-3.fc43.noarch grep-3.12-2.fc43.x86_64 gzip-1.14-1.fc44.x86_64 ima-evm-utils-libs-1.6.2-6.fc43.x86_64 info-7.2-6.fc43.x86_64 jansson-2.14-3.fc43.x86_64 java-srpm-macros-1-7.fc43.noarch json-c-0.18-7.fc43.x86_64 kernel-srpm-macros-1.0-27.fc43.noarch keyutils-libs-1.6.3-6.fc43.x86_64 krb5-libs-1.21.3-7.fc43.x86_64 libacl-2.3.2-4.fc43.x86_64 libarchive-3.8.1-3.fc43.x86_64 libassuan-2.5.7-4.fc43.x86_64 libattr-2.5.2-6.fc43.x86_64 libblkid-2.41.1-16.fc44.x86_64 libbrotli-1.1.0-9.fc44.x86_64 libcap-2.76-3.fc44.x86_64 libcap-ng-0.8.5-7.fc44.x86_64 libcom_err-1.47.3-2.fc43.x86_64 libcurl-8.16.0~rc2-1.fc44.x86_64 libeconf-0.7.9-2.fc43.x86_64 libevent-2.1.12-16.fc43.x86_64 libfdisk-2.41.1-16.fc44.x86_64 libffi-3.5.1-2.fc43.x86_64 libfsverity-1.6-3.fc43.x86_64 libgcc-15.2.1-1.fc44.1.x86_64 libgcrypt-1.11.1-2.fc43.x86_64 libgomp-15.2.1-1.fc44.1.x86_64 libgpg-error-1.55-2.fc43.x86_64 libidn2-2.3.8-2.fc43.x86_64 libksba-1.6.7-4.fc43.x86_64 liblastlog2-2.41.1-16.fc44.x86_64 libmount-2.41.1-16.fc44.x86_64 libnghttp2-1.66.0-2.fc43.x86_64 libpkgconf-2.3.0-3.fc43.x86_64 libpsl-0.21.5-6.fc43.x86_64 libselinux-3.9-4.fc44.x86_64 libsemanage-3.9-3.fc44.x86_64 libsepol-3.9-2.fc43.x86_64 libsmartcols-2.41.1-16.fc44.x86_64 libssh-0.11.2-2.fc43.x86_64 libssh-config-0.11.2-2.fc43.noarch libstdc++-15.2.1-1.fc44.1.x86_64 libtasn1-4.20.0-2.fc43.x86_64 libtool-ltdl-2.5.4-7.fc43.x86_64 libunistring-1.1-10.fc43.x86_64 libusb1-1.0.29-4.fc44.x86_64 libuuid-2.41.1-16.fc44.x86_64 libverto-0.3.2-11.fc43.x86_64 libxcrypt-4.4.38-8.fc43.x86_64 libxml2-2.12.10-4.fc44.x86_64 libzstd-1.5.7-2.fc43.x86_64 lua-libs-5.4.8-2.fc43.x86_64 lua-srpm-macros-1-16.fc43.noarch lz4-libs-1.10.0-3.fc43.x86_64 mpfr-4.2.2-2.fc43.x86_64 ncurses-base-6.5-7.20250614.fc43.noarch ncurses-libs-6.5-7.20250614.fc43.x86_64 nettle-3.10.1-2.fc43.x86_64 npth-1.8-3.fc43.x86_64 ocaml-srpm-macros-11-2.fc43.noarch openblas-srpm-macros-2-20.fc43.noarch openldap-2.6.10-3.fc43.x86_64 openssl-libs-3.5.1-3.fc44.x86_64 p11-kit-0.25.5-9.fc43.x86_64 p11-kit-trust-0.25.5-9.fc43.x86_64 package-notes-srpm-macros-0.5-14.fc43.noarch pam-libs-1.7.1-3.fc43.x86_64 patch-2.8-2.fc43.x86_64 pcre2-10.45-1.fc43.1.x86_64 pcre2-syntax-10.45-1.fc43.1.noarch perl-srpm-macros-1-60.fc43.noarch pkgconf-2.3.0-3.fc43.x86_64 pkgconf-m4-2.3.0-3.fc43.noarch pkgconf-pkg-config-2.3.0-3.fc43.x86_64 popt-1.19-9.fc43.x86_64 publicsuffix-list-dafsa-20250616-2.fc43.noarch pyproject-srpm-macros-1.18.3-2.fc43.noarch python-srpm-macros-3.14-7.fc44.noarch qt5-srpm-macros-5.15.17-2.fc43.noarch qt6-srpm-macros-6.9.1-2.fc43.noarch readline-8.3-2.fc43.x86_64 redhat-rpm-config-343-13.fc44.noarch rpm-5.99.92-1.fc44.x86_64 rpm-build-5.99.92-1.fc44.x86_64 rpm-build-libs-5.99.92-1.fc44.x86_64 rpm-libs-5.99.92-1.fc44.x86_64 rpm-sequoia-1.9.0-2.fc43.x86_64 rpm-sign-libs-5.99.92-1.fc44.x86_64 rust-srpm-macros-26.4-1.fc44.noarch sed-4.9-5.fc43.x86_64 setup-2.15.0-26.fc43.noarch shadow-utils-4.18.0-3.fc43.x86_64 sqlite-libs-3.50.2-2.fc43.x86_64 systemd-libs-258~rc3-2.fc44.x86_64 systemd-standalone-sysusers-258~rc3-2.fc44.x86_64 tar-1.35-6.fc43.x86_64 tpm2-tss-4.1.3-8.fc43.x86_64 tree-sitter-srpm-macros-0.4.2-1.fc43.noarch unzip-6.0-68.fc44.x86_64 util-linux-2.41.1-16.fc44.x86_64 util-linux-core-2.41.1-16.fc44.x86_64 which-2.23-3.fc43.x86_64 xxhash-libs-0.8.3-3.fc43.x86_64 xz-5.8.1-2.fc43.x86_64 xz-libs-5.8.1-2.fc43.x86_64 zig-srpm-macros-1-5.fc43.noarch zip-3.0-44.fc43.x86_64 zlib-ng-compat-2.2.5-1.fc43.x86_64 zstd-1.5.7-2.fc43.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1753401600 Wrote: /builddir/build/SRPMS/python-xbout-0.3.6-6.fc44.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1756533364.710581/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-d367oozo/python-xbout/python-xbout.spec) Config(child) 0 minutes 23 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/python-xbout-0.3.6-6.fc44.src.rpm) Config(fedora-rawhide-x86_64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1756533364.710581/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1756533364.710581/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1756533364.710581/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-5.99.92-1.fc44.x86_64 rpm-sequoia-1.9.0-2.fc43.x86_64 dnf5-5.2.16.0-3.fc44.x86_64 dnf5-plugins-5.2.16.0-3.fc44.x86_64 Finish: chroot init Start: build phase for python-xbout-0.3.6-6.fc44.src.rpm Start: build setup for python-xbout-0.3.6-6.fc44.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1753401600 Wrote: /builddir/build/SRPMS/python-xbout-0.3.6-6.fc44.src.rpm Updating and loading repositories: Copr repository 100% | 23.5 KiB/s | 1.6 KiB | 00m00s fedora 100% | 209.7 KiB/s | 27.3 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: python3-boutdata noarch 0.3.0-5.fc44 fedora 1.2 MiB python3-devel x86_64 3.14.0~rc2-1.fc44 copr_base 1.9 MiB python3-pytest noarch 8.3.5-8.fc44 fedora 21.6 MiB python3-sphinx noarch 1:8.2.3-10.fc44 fedora 12.3 MiB python3-sphinx-autodoc-typehints noarch 3.1.0-4.fc44 fedora 129.1 KiB Installing dependencies: abattis-cantarell-vf-fonts noarch 0.301-15.fc43 fedora 192.7 KiB blosc x86_64 1.21.6-7.fc43 fedora 126.2 KiB cairo x86_64 1.18.4-2.fc43 fedora 1.8 MiB default-fonts-core-sans noarch 4.2-5.fc43 fedora 11.9 KiB dejavu-sans-fonts noarch 2.37-26.fc43 fedora 5.5 MiB expat x86_64 2.7.1-3.fc43 fedora 294.2 KiB flexiblas x86_64 3.4.5-5.fc44 fedora 50.4 KiB flexiblas-netlib x86_64 3.4.5-5.fc44 fedora 10.9 MiB flexiblas-openblas-openmp x86_64 3.4.5-5.fc44 fedora 39.2 KiB fontconfig x86_64 2.17.0-3.fc43 fedora 765.9 KiB fonts-filesystem noarch 1:2.0.5-23.fc43 fedora 0.0 B freetype x86_64 2.13.3-3.fc43 fedora 850.2 KiB fribidi x86_64 1.0.16-3.fc43 fedora 190.3 KiB glib2 x86_64 2.85.4-1.fc44 fedora 14.7 MiB google-noto-fonts-common noarch 20250801-4.fc43 fedora 17.7 KiB google-noto-sans-vf-fonts noarch 20250801-4.fc43 fedora 1.4 MiB graphite2 x86_64 1.3.14-19.fc43 fedora 191.8 KiB harfbuzz x86_64 11.4.4-1.fc44 fedora 2.8 MiB hdf-libs x86_64 4.3.0-4.fc43 fedora 687.2 KiB hdf5 x86_64 1.14.6-6.fc43 fedora 6.4 MiB jbigkit-libs x86_64 2.1-32.fc43 fedora 113.5 KiB lcms2 x86_64 2.16-6.fc43 fedora 433.7 KiB libX11 x86_64 1.8.12-1.fc43 fedora 1.3 MiB libX11-common noarch 1.8.12-1.fc43 fedora 1.2 MiB libXau x86_64 1.0.12-3.fc43 fedora 72.9 KiB libXext x86_64 1.3.6-4.fc43 fedora 90.0 KiB libXrender x86_64 0.9.12-3.fc43 fedora 46.0 KiB libaec x86_64 1.1.4-3.fc44 fedora 90.4 KiB libgfortran x86_64 15.2.1-1.fc44.1 fedora 3.4 MiB libimagequant x86_64 4.0.3-8.fc43 fedora 690.9 KiB libjpeg-turbo x86_64 3.1.1-2.fc43 fedora 799.5 KiB liblerc x86_64 4.0.0-9.fc43 fedora 624.1 KiB libpng x86_64 2:1.6.50-2.fc43 fedora 237.7 KiB libqhull_r x86_64 1:8.0.2-7.fc43 fedora 483.3 KiB libquadmath x86_64 15.2.1-1.fc44.1 fedora 317.9 KiB libraqm x86_64 0.10.1-3.fc43 fedora 28.6 KiB libtiff x86_64 4.7.0-8.fc44 fedora 619.0 KiB libtirpc x86_64 1.3.7-0.fc44 fedora 198.9 KiB libwebp x86_64 1.6.0-2.fc43 fedora 956.6 KiB libxcb x86_64 1.17.0-6.fc43 fedora 1.1 MiB libzip x86_64 1.11.4-2.fc43 fedora 135.8 KiB lzo x86_64 2.10-15.fc43 fedora 178.9 KiB mpdecimal x86_64 4.0.1-2.fc43 fedora 217.2 KiB netcdf x86_64 4.9.3-1.fc44 fedora 2.5 MiB openblas x86_64 0.3.29-2.fc43 fedora 111.7 KiB openblas-openmp x86_64 0.3.29-2.fc43 fedora 43.7 MiB openjpeg x86_64 2.5.3-8.fc43 fedora 455.7 KiB pixman x86_64 0.46.2-2.fc43 fedora 710.3 KiB pyproject-rpm-macros noarch 1.18.3-2.fc43 fedora 114.5 KiB python-pip-wheel noarch 25.2-2.fc44 copr_base 1.2 MiB python-rpm-macros noarch 3.14-7.fc44 fedora 27.6 KiB python3 x86_64 3.14.0~rc2-1.fc44 copr_base 28.9 KiB python3-babel noarch 2.17.0-5.fc44 fedora 30.3 MiB python3-cairo x86_64 1.28.0-3.fc44 fedora 492.9 KiB python3-certifi noarch 2025.07.09-2.fc44 fedora 7.4 KiB python3-cftime x86_64 1.6.4-9.fc44 fedora 581.6 KiB python3-charset-normalizer noarch 3.4.3-2.fc44 fedora 355.7 KiB python3-contourpy x86_64 1.3.3-2.fc44 fedora 856.7 KiB python3-cycler noarch 0.11.0-18.fc44 fedora 37.8 KiB python3-dateutil noarch 1:2.9.0.post0-5.fc44 fedora 877.5 KiB python3-docutils noarch 0.21.2-5.fc44 fedora 5.0 MiB python3-fonttools x86_64 4.59.2-1.fc44 fedora 19.0 MiB python3-idna noarch 3.10-5.fc44 fedora 730.6 KiB python3-imagesize noarch 1.4.1-13.fc44 copr_base 36.0 KiB python3-iniconfig noarch 2.1.0-2.fc44 fedora 42.4 KiB python3-jinja2 noarch 3.1.6-5.fc44 copr_base 3.1 MiB python3-kiwisolver x86_64 1.4.9-2.fc44 fedora 154.0 KiB python3-libs x86_64 3.14.0~rc2-1.fc44 copr_base 42.9 MiB python3-markupsafe x86_64 3.0.2-5.fc44 fedora 61.5 KiB python3-matplotlib x86_64 3.10.5-1.fc43 copr_base 31.6 MiB python3-matplotlib-data-fonts x86_64 3.10.5-1.fc43 copr_base 7.9 MiB python3-mpmath noarch 1.3.0-15.fc44 fedora 5.3 MiB python3-natsort noarch 8.4.0-7.fc44 copr_base 264.4 KiB python3-netcdf4 x86_64 1.7.2-8.fc44 fedora 2.3 MiB python3-numpy x86_64 1:2.3.2-2.fc44 copr_base 41.3 MiB python3-numpy-f2py x86_64 1:2.3.2-2.fc44 copr_base 2.1 MiB python3-olefile noarch 0.47-10.fc44 fedora 346.5 KiB python3-packaging noarch 25.0-5.fc44 copr_base 607.5 KiB python3-pillow x86_64 11.3.0-4.fc44 copr_base 4.2 MiB python3-platformdirs noarch 4.2.2-7.fc44 fedora 177.6 KiB python3-pluggy noarch 1.6.0-3.fc44 copr_base 211.0 KiB python3-pooch noarch 1.8.2-8.fc44 fedora 635.3 KiB python3-pygments noarch 2.19.1-5.fc44 fedora 11.3 MiB python3-pyparsing noarch 3.1.2-13.fc44 fedora 1.0 MiB python3-requests noarch 2.32.5-1.fc44 copr_base 476.9 KiB python3-roman-numerals-py noarch 3.1.0-4.fc44 fedora 40.4 KiB python3-rpm-generators noarch 14-13.fc43 fedora 81.7 KiB python3-rpm-macros noarch 3.14-7.fc44 fedora 6.5 KiB python3-scipy x86_64 1.15.3-5.fc44 fedora 68.8 MiB python3-six noarch 1.17.0-6.fc44 fedora 118.0 KiB python3-snowballstemmer noarch 3.0.1-7.fc44 fedora 1.8 MiB python3-sphinx-theme-alabaster noarch 0.7.16-10.fc44 fedora 42.0 KiB python3-sympy noarch 1.14.0-6.fc44 fedora 84.3 MiB python3-urllib3 noarch 2.5.0-2.fc44 fedora 1.1 MiB snappy x86_64 1.2.2-2.fc43 fedora 71.8 KiB tzdata noarch 2025b-3.fc43 fedora 1.6 MiB xml-common noarch 0.6.3-67.fc43 fedora 78.4 KiB Transaction Summary: Installing: 102 packages Total size of inbound packages is 113 MiB. Need to download 65 MiB. After this operation, 518 MiB extra will be used (install 518 MiB, remove 0 B). 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MiB/s | 869.5 KiB | 00m00s [ 95/104] Installing python3-matplotlib 100% | 419.3 MiB/s | 31.9 MiB | 00m00s [ 96/104] Installing snappy-0:1.2.2-2.f 100% | 71.8 MiB/s | 73.5 KiB | 00m00s [ 97/104] Installing blosc-0:1.21.6-7.f 100% | 126.0 MiB/s | 129.0 KiB | 00m00s [ 98/104] Installing libzip-0:1.11.4-2. 100% | 133.7 MiB/s | 137.0 KiB | 00m00s [ 99/104] Installing netcdf-0:4.9.3-1.f 100% | 123.2 MiB/s | 2.5 MiB | 00m00s [100/104] Installing python3-netcdf4-0: 100% | 330.3 MiB/s | 2.3 MiB | 00m00s [101/104] Installing python3-boutdata-0 100% | 71.0 MiB/s | 1.2 MiB | 00m00s [102/104] Installing python3-sphinx-aut 100% | 43.6 MiB/s | 133.9 KiB | 00m00s [103/104] Installing python3-pytest-0:8 100% | 369.4 MiB/s | 21.8 MiB | 00m00s [104/104] Installing python3-devel-0:3. 100% | 16.6 MiB/s | 2.0 MiB | 00m00s Warning: skipped OpenPGP checks for 15 packages from repository: copr_base Complete! Finish: build setup for python-xbout-0.3.6-6.fc44.src.rpm Start: rpmbuild python-xbout-0.3.6-6.fc44.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1753401600 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.vEWOWE Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.2FpRFI + umask 022 + cd /builddir/build/BUILD/python-xbout-0.3.6-build + cd /builddir/build/BUILD/python-xbout-0.3.6-build + rm -rf xbout-0.3.6 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/xbout-0.3.6.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd xbout-0.3.6 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/xarray-version.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/sphinx-theme.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/fix-dirs.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + rm -rf xbout.egg-info + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.MJ7kH9 + umask 022 + cd /builddir/build/BUILD/python-xbout-0.3.6-build + cd xbout-0.3.6 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-xbout-0.3.6-build/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-xbout-0.3.6-build/.pyproject-builddir + RPM_TOXENV=py314 + FEDORA=44 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-xbout-0.3.6-build/pyproject-wheeldir --output /builddir/build/BUILD/python-xbout-0.3.6-build/python-xbout-0.3.6-6.fc44.x86_64-pyproject-buildrequires -r Handling setuptools >= 65 from build-system.requires Requirement not satisfied: setuptools >= 65 Handling setuptools_scm[toml] >= 7 from build-system.requires Requirement not satisfied: setuptools_scm[toml] >= 7 Handling wheel >= 0.29.0 from build-system.requires Requirement not satisfied: wheel >= 0.29.0 Exiting dependency generation pass: build backend + cat /builddir/build/BUILD/python-xbout-0.3.6-build/python-xbout-0.3.6-6.fc44.x86_64-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-xbout-0.3.6-6.fc44.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: Copr repository 100% | 20.4 KiB/s | 1.6 KiB | 00m00s fedora 100% | 147.3 KiB/s | 27.3 KiB | 00m00s Repositories loaded. Package "pyproject-rpm-macros-1.18.3-2.fc43.noarch" is already installed. Package "python3-boutdata-0.3.0-5.fc44.noarch" is already installed. Package "python3-devel-3.14.0~rc2-1.fc44.x86_64" is already installed. Package "python3-sphinx-autodoc-typehints-3.1.0-4.fc44.noarch" is already installed. Package "python3-packaging-25.0-5.fc44.noarch" is already installed. Package "python3-pytest-8.3.5-8.fc44.noarch" is already installed. Package "python3-sphinx-1:8.2.3-10.fc44.noarch" is already installed. Package Arch Version Repository Size Installing: python3-pip noarch 25.2-2.fc44 copr_base 11.3 MiB python3-setuptools noarch 78.1.1-12.fc44 fedora 9.0 MiB python3-setuptools_scm noarch 8.3.1-7.fc44 fedora 354.5 KiB python3-setuptools_scm+toml noarch 8.3.1-7.fc44 fedora 9.8 KiB python3-wheel noarch 1:0.45.1-17.fc44 fedora 593.1 KiB Transaction Summary: Installing: 5 packages Total size of inbound packages is 5 MiB. Need to download 2 MiB. After this operation, 21 MiB extra will be used (install 21 MiB, remove 0 B). [1/5] python3-pip-0:25.2-2.fc44.noarch 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [2/5] python3-setuptools_scm-0:8.3.1-7. 100% | 9.9 MiB/s | 121.5 KiB | 00m00s [3/5] python3-setuptools_scm+toml-0:8.3 100% | 810.3 KiB/s | 9.7 KiB | 00m00s [4/5] python3-wheel-1:0.45.1-17.fc44.no 100% | 25.4 MiB/s | 182.1 KiB | 00m00s [5/5] python3-setuptools-0:78.1.1-12.fc 100% | 85.6 MiB/s | 2.1 MiB | 00m00s -------------------------------------------------------------------------------- [5/5] Total 100% | 84.3 MiB/s | 2.4 MiB | 00m00s Running transaction [1/7] Verify package files 100% | 277.0 B/s | 5.0 B | 00m00s [2/7] Prepare transaction 100% | 151.0 B/s | 5.0 B | 00m00s [3/7] Installing python3-setuptools-0:7 100% | 214.4 MiB/s | 9.2 MiB | 00m00s [4/7] Installing python3-setuptools_scm 100% | 121.9 MiB/s | 374.4 KiB | 00m00s [5/7] Installing python3-setuptools_scm 100% | 0.0 B/s | 124.0 B | 00m00s [6/7] Installing python3-wheel-1:0.45.1 100% | 33.3 MiB/s | 613.1 KiB | 00m00s [7/7] Installing python3-pip-0:25.2-2.f 100% | 137.2 MiB/s | 11.5 MiB | 00m00s Warning: skipped OpenPGP checks for 1 package from repository: copr_base Complete! Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1753401600 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.WTOBYX + umask 022 + cd /builddir/build/BUILD/python-xbout-0.3.6-build + cd xbout-0.3.6 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-xbout-0.3.6-build/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-xbout-0.3.6-build/.pyproject-builddir + RPM_TOXENV=py314 + FEDORA=44 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-xbout-0.3.6-build/pyproject-wheeldir --output /builddir/build/BUILD/python-xbout-0.3.6-build/python-xbout-0.3.6-6.fc44.x86_64-pyproject-buildrequires -r Handling setuptools >= 65 from build-system.requires Requirement satisfied: setuptools >= 65 (installed: setuptools 78.1.1) Handling setuptools_scm[toml] >= 7 from build-system.requires Requirement satisfied: setuptools_scm[toml] >= 7 (installed: setuptools_scm 8.3.1) (extras are currently not checked) Handling wheel >= 0.29.0 from build-system.requires Requirement satisfied: wheel >= 0.29.0 (installed: wheel 0.45.1) /usr/lib/python3.14/site-packages/setuptools_scm/git.py:310: UserWarning: git archive did not support describe output warnings.warn("git archive did not support describe output") /usr/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). By 2026-Feb-18, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: Apache Software License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3.14/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: Apache Software License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running egg_info creating xbout.egg-info writing xbout.egg-info/PKG-INFO writing dependency_links to xbout.egg-info/dependency_links.txt writing requirements to xbout.egg-info/requires.txt writing top-level names to xbout.egg-info/top_level.txt writing manifest file 'xbout.egg-info/SOURCES.txt' WARNING setuptools_scm._file_finders.git git archive detected - fallback to listing all files adding license file 'LICENSE' writing manifest file 'xbout.egg-info/SOURCES.txt' /usr/lib/python3.14/site-packages/setuptools_scm/git.py:310: UserWarning: git archive did not support describe output warnings.warn("git archive did not support describe output") /usr/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). By 2026-Feb-18, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: Apache Software License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3.14/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: Apache Software License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running dist_info writing xbout.egg-info/PKG-INFO writing dependency_links to xbout.egg-info/dependency_links.txt writing requirements to xbout.egg-info/requires.txt writing top-level names to xbout.egg-info/top_level.txt WARNING setuptools_scm._file_finders.git git archive detected - fallback to listing all files adding license file 'LICENSE' writing manifest file 'xbout.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/xbout-0.3.6.dist-info' Handling xarray>=0.18.0 from hook generated metadata: Requires-Dist (xbout) Requirement not satisfied: xarray>=0.18.0 Handling boutdata>=0.1.4 from hook generated metadata: Requires-Dist (xbout) Requirement satisfied: boutdata>=0.1.4 (installed: boutdata 0.3.0) Handling dask[array]>=2.10.0 from hook generated metadata: Requires-Dist (xbout) Requirement not satisfied: dask[array]>=2.10.0 Handling gelidum>=0.5.3 from hook generated metadata: Requires-Dist (xbout) Requirement not satisfied: gelidum>=0.5.3 Handling natsort>=5.5.0 from hook generated metadata: Requires-Dist (xbout) Requirement satisfied: natsort>=5.5.0 (installed: natsort 8.4.0) Handling matplotlib!=3.3.0,!=3.3.1,!=3.3.2,>=3.1.1 from hook generated metadata: Requires-Dist (xbout) Requirement satisfied: matplotlib!=3.3.0,!=3.3.1,!=3.3.2,>=3.1.1 (installed: matplotlib 3.10.5) Handling animatplot-ng>=0.4.2 from hook generated metadata: Requires-Dist (xbout) Requirement not satisfied: animatplot-ng>=0.4.2 Handling netcdf4>=1.4.0 from hook generated metadata: Requires-Dist (xbout) Requirement satisfied: netcdf4>=1.4.0 (installed: netcdf4 1.7.2) Handling Pillow>=6.1.0 from hook generated metadata: Requires-Dist (xbout) Requirement satisfied: Pillow>=6.1.0 (installed: Pillow 11.3.0) Handling numpy>=1.18.0; extra == "calc" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: numpy>=1.18.0; extra == "calc" Handling scipy>=1.3.0; extra == "calc" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: scipy>=1.3.0; extra == "calc" Handling dask>=2.2.0; extra == "calc" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: dask>=2.2.0; extra == "calc" Handling statsmodels>=0.10.1; extra == "calc" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: statsmodels>=0.10.1; extra == "calc" Handling xrft; extra == "calc" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: xrft; extra == "calc" Handling xhistogram; extra == "calc" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: xhistogram; extra == "calc" Handling sphinx>=5.3; extra == "docs" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: sphinx>=5.3; extra == "docs" Handling sphinx-book-theme>=0.4.0rc1; extra == "docs" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: sphinx-book-theme>=0.4.0rc1; extra == "docs" Handling sphinx_autodoc_typehints>=1.19; extra == "docs" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: sphinx_autodoc_typehints>=1.19; extra == "docs" Handling k3d>=2.8.0; extra == "3d-plot" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: k3d>=2.8.0; extra == "3d-plot" Handling mayavi>=4.7.2; extra == "3d-plot" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: mayavi>=4.7.2; extra == "3d-plot" Handling wand; extra == "3d-plot" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: wand; extra == "3d-plot" Handling pytest>=3.3.0; extra == "tests" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: pytest>=3.3.0; extra == "tests" Handling pytest-cov; extra == "tests" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: pytest-cov; extra == "tests" + cat /builddir/build/BUILD/python-xbout-0.3.6-build/python-xbout-0.3.6-6.fc44.x86_64-pyproject-buildrequires + rm -rfv xbout-0.3.6.dist-info/ removed 'xbout-0.3.6.dist-info/licenses/LICENSE' removed directory 'xbout-0.3.6.dist-info/licenses' removed 'xbout-0.3.6.dist-info/METADATA' removed 'xbout-0.3.6.dist-info/top_level.txt' removed directory 'xbout-0.3.6.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-xbout-0.3.6-6.fc44.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: Copr repository 100% | 20.4 KiB/s | 1.6 KiB | 00m00s fedora 100% | 199.0 KiB/s | 27.3 KiB | 00m00s Repositories loaded. Package "pyproject-rpm-macros-1.18.3-2.fc43.noarch" is already installed. Package "python3-boutdata-0.3.0-5.fc44.noarch" is already installed. Package "python3-devel-3.14.0~rc2-1.fc44.x86_64" is already installed. Package "python3-sphinx-autodoc-typehints-3.1.0-4.fc44.noarch" is already installed. Package "python3-boutdata-0.3.0-5.fc44.noarch" is already installed. Package "python3-natsort-8.4.0-7.fc44.noarch" is already installed. Package "python3-netcdf4-1.7.2-8.fc44.x86_64" is already installed. Package "python3-packaging-25.0-5.fc44.noarch" is already installed. Package "python3-pillow-11.3.0-4.fc44.x86_64" is already installed. Package "python3-pip-25.2-2.fc44.noarch" is already installed. Package "python3-pytest-8.3.5-8.fc44.noarch" is already installed. Package "python3-setuptools-78.1.1-12.fc44.noarch" is already installed. Package "python3-setuptools_scm-8.3.1-7.fc44.noarch" is already installed. Package "python3-setuptools_scm+toml-8.3.1-7.fc44.noarch" is already installed. Package "python3-sphinx-1:8.2.3-10.fc44.noarch" is already installed. Package "python3-wheel-1:0.45.1-17.fc44.noarch" is already installed. Package Arch Version Repository Size Installing: python3-animatplot noarch 0.4.5-3.fc44 fedora 113.0 KiB python3-dask noarch 2025.4.1-5.fc44 fedora 20.5 MiB python3-dask+array noarch 2025.4.1-5.fc44 fedora 6.8 KiB python3-gelidum noarch 0.7.0-9.fc44 fedora 123.7 KiB python3-xarray noarch 2025.4.0-2.fc44 fedora 20.0 MiB Installing dependencies: libyaml x86_64 0.2.5-17.fc43 fedora 134.6 KiB python3-click noarch 8.2.2-5.fc44 copr_base 1.2 MiB python3-cloudpickle noarch 3.1.1-6.fc44 fedora 129.3 KiB python3-fsspec noarch 2025.7.0-1.fc44 fedora 1.9 MiB python3-locket noarch 1.0.0-17.fc44 fedora 20.9 KiB python3-pandas x86_64 2.2.3-5.fc43~bootstrap copr_base 41.5 MiB python3-partd noarch 1.4.2-7.fc44 fedora 166.8 KiB python3-pytz noarch 2025.2-4.fc44 copr_base 224.0 KiB python3-pyyaml x86_64 6.0.2-6.fc44 copr_base 793.4 KiB python3-toolz noarch 1.0.0-5.fc44 copr_base 618.0 KiB Transaction Summary: Installing: 15 packages Total size of inbound packages is 16 MiB. Need to download 5 MiB. After this operation, 87 MiB extra will be used (install 87 MiB, remove 0 B). [ 1/15] python3-xarray-0:2025.4.0-2.fc4 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 2/15] python3-pandas-0:2.2.3-5.fc43~b 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 3/15] python3-pytz-0:2025.2-4.fc44.no 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 4/15] python3-dask+array-0:2025.4.1-5 100% | 948.4 KiB/s | 12.3 KiB | 00m00s [ 5/15] python3-dask-0:2025.4.1-5.fc44. 100% | 142.4 MiB/s | 3.7 MiB | 00m00s [ 6/15] python3-animatplot-0:0.4.5-3.fc 100% | 749.8 KiB/s | 56.2 KiB | 00m00s [ 7/15] python3-gelidum-0:0.7.0-9.fc44. 100% | 879.2 KiB/s | 57.1 KiB | 00m00s [ 8/15] python3-cloudpickle-0:3.1.1-6.f 100% | 15.7 MiB/s | 48.1 KiB | 00m00s [ 9/15] python3-fsspec-0:2025.7.0-1.fc4 100% | 113.3 MiB/s | 464.2 KiB | 00m00s [10/15] python3-partd-0:1.4.2-7.fc44.no 100% | 15.4 MiB/s | 63.1 KiB | 00m00s [11/15] libyaml-0:0.2.5-17.fc43.x86_64 100% | 19.6 MiB/s | 60.1 KiB | 00m00s [12/15] python3-pyyaml-0:6.0.2-6.fc44.x 100% | 3.7 MiB/s | 225.8 KiB | 00m00s [13/15] python3-locket-0:1.0.0-17.fc44. 100% | 5.9 MiB/s | 18.0 KiB | 00m00s [14/15] python3-click-0:8.2.2-5.fc44.no 100% | 222.2 KiB/s | 254.8 KiB | 00m01s [15/15] python3-toolz-0:1.0.0-5.fc44.no 100% | 142.8 KiB/s | 159.2 KiB | 00m01s -------------------------------------------------------------------------------- [15/15] Total 100% | 4.2 MiB/s | 5.1 MiB | 00m01s Running transaction [ 1/17] Verify package files 100% | 250.0 B/s | 15.0 B | 00m00s [ 2/17] Prepare transaction 100% | 319.0 B/s | 15.0 B | 00m00s [ 3/17] Installing python3-toolz-0:1.0. 100% | 155.7 MiB/s | 637.6 KiB | 00m00s [ 4/17] Installing python3-locket-0:1.0 100% | 22.9 MiB/s | 23.4 KiB | 00m00s [ 5/17] Installing python3-partd-0:1.4. 100% | 86.0 MiB/s | 176.2 KiB | 00m00s [ 6/17] Installing python3-pytz-0:2025. 100% | 74.7 MiB/s | 229.4 KiB | 00m00s [ 7/17] Installing python3-pandas-0:2.2 100% | 389.9 MiB/s | 41.7 MiB | 00m00s [ 8/17] Installing libyaml-0:0.2.5-17.f 100% | 132.8 MiB/s | 136.0 KiB | 00m00s [ 9/17] Installing python3-pyyaml-0:6.0 100% | 197.1 MiB/s | 807.4 KiB | 00m00s [10/17] Installing python3-fsspec-0:202 100% | 275.4 MiB/s | 1.9 MiB | 00m00s [11/17] Installing python3-cloudpickle- 100% | 130.0 MiB/s | 133.2 KiB | 00m00s [12/17] Installing python3-click-0:8.2. 100% | 207.8 MiB/s | 1.2 MiB | 00m00s [13/17] Installing python3-dask-0:2025. 100% | 275.8 MiB/s | 20.7 MiB | 00m00s [14/17] Installing python3-dask+array-0 100% | 60.5 KiB/s | 124.0 B | 00m00s [15/17] Installing python3-xarray-0:202 100% | 418.3 MiB/s | 20.1 MiB | 00m00s [16/17] Installing python3-gelidum-0:0. 100% | 66.2 MiB/s | 135.6 KiB | 00m00s [17/17] Installing python3-animatplot-0 100% | 5.5 MiB/s | 124.5 KiB | 00m00s Warning: skipped OpenPGP checks for 5 packages from repository: copr_base Complete! Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1753401600 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.2niMUt + umask 022 + cd /builddir/build/BUILD/python-xbout-0.3.6-build + cd xbout-0.3.6 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-xbout-0.3.6-build/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-xbout-0.3.6-build/.pyproject-builddir + RPM_TOXENV=py314 + FEDORA=44 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-xbout-0.3.6-build/pyproject-wheeldir --output /builddir/build/BUILD/python-xbout-0.3.6-build/python-xbout-0.3.6-6.fc44.x86_64-pyproject-buildrequires -r Handling setuptools >= 65 from build-system.requires Requirement satisfied: setuptools >= 65 (installed: setuptools 78.1.1) Handling setuptools_scm[toml] >= 7 from build-system.requires Requirement satisfied: setuptools_scm[toml] >= 7 (installed: setuptools_scm 8.3.1) (extras are currently not checked) Handling wheel >= 0.29.0 from build-system.requires Requirement satisfied: wheel >= 0.29.0 (installed: wheel 0.45.1) /usr/lib/python3.14/site-packages/setuptools_scm/git.py:310: UserWarning: git archive did not support describe output warnings.warn("git archive did not support describe output") /usr/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). By 2026-Feb-18, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: Apache Software License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3.14/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: Apache Software License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running egg_info writing xbout.egg-info/PKG-INFO writing dependency_links to xbout.egg-info/dependency_links.txt writing requirements to xbout.egg-info/requires.txt writing top-level names to xbout.egg-info/top_level.txt WARNING setuptools_scm._file_finders.git git archive detected - fallback to listing all files adding license file 'LICENSE' writing manifest file 'xbout.egg-info/SOURCES.txt' /usr/lib/python3.14/site-packages/setuptools_scm/git.py:310: UserWarning: git archive did not support describe output warnings.warn("git archive did not support describe output") /usr/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). By 2026-Feb-18, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: Apache Software License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3.14/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: Apache Software License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running dist_info writing xbout.egg-info/PKG-INFO writing dependency_links to xbout.egg-info/dependency_links.txt writing requirements to xbout.egg-info/requires.txt writing top-level names to xbout.egg-info/top_level.txt WARNING setuptools_scm._file_finders.git git archive detected - fallback to listing all files adding license file 'LICENSE' writing manifest file 'xbout.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/xbout-0.3.6.dist-info' Handling xarray>=0.18.0 from hook generated metadata: Requires-Dist (xbout) Requirement satisfied: xarray>=0.18.0 (installed: xarray 2025.4.0) Handling boutdata>=0.1.4 from hook generated metadata: Requires-Dist (xbout) Requirement satisfied: boutdata>=0.1.4 (installed: boutdata 0.3.0) Handling dask[array]>=2.10.0 from hook generated metadata: Requires-Dist (xbout) Requirement satisfied: dask[array]>=2.10.0 (installed: dask 2025.4.1) (extras are currently not checked) Handling gelidum>=0.5.3 from hook generated metadata: Requires-Dist (xbout) Requirement satisfied: gelidum>=0.5.3 (installed: gelidum 0.7.0) Handling natsort>=5.5.0 from hook generated metadata: Requires-Dist (xbout) Requirement satisfied: natsort>=5.5.0 (installed: natsort 8.4.0) Handling matplotlib!=3.3.0,!=3.3.1,!=3.3.2,>=3.1.1 from hook generated metadata: Requires-Dist (xbout) Requirement satisfied: matplotlib!=3.3.0,!=3.3.1,!=3.3.2,>=3.1.1 (installed: matplotlib 3.10.5) Handling animatplot-ng>=0.4.2 from hook generated metadata: Requires-Dist (xbout) Requirement satisfied: animatplot-ng>=0.4.2 (installed: animatplot-ng 0.4.5) Handling netcdf4>=1.4.0 from hook generated metadata: Requires-Dist (xbout) Requirement satisfied: netcdf4>=1.4.0 (installed: netcdf4 1.7.2) Handling Pillow>=6.1.0 from hook generated metadata: Requires-Dist (xbout) Requirement satisfied: Pillow>=6.1.0 (installed: Pillow 11.3.0) Handling numpy>=1.18.0; extra == "calc" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: numpy>=1.18.0; extra == "calc" Handling scipy>=1.3.0; extra == "calc" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: scipy>=1.3.0; extra == "calc" Handling dask>=2.2.0; extra == "calc" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: dask>=2.2.0; extra == "calc" Handling statsmodels>=0.10.1; extra == "calc" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: statsmodels>=0.10.1; extra == "calc" Handling xrft; extra == "calc" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: xrft; extra == "calc" Handling xhistogram; extra == "calc" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: xhistogram; extra == "calc" Handling sphinx>=5.3; extra == "docs" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: sphinx>=5.3; extra == "docs" Handling sphinx-book-theme>=0.4.0rc1; extra == "docs" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: sphinx-book-theme>=0.4.0rc1; extra == "docs" Handling sphinx_autodoc_typehints>=1.19; extra == "docs" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: sphinx_autodoc_typehints>=1.19; extra == "docs" Handling k3d>=2.8.0; extra == "3d-plot" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: k3d>=2.8.0; extra == "3d-plot" Handling mayavi>=4.7.2; extra == "3d-plot" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: mayavi>=4.7.2; extra == "3d-plot" Handling wand; extra == "3d-plot" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: wand; extra == "3d-plot" Handling pytest>=3.3.0; extra == "tests" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: pytest>=3.3.0; extra == "tests" Handling pytest-cov; extra == "tests" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: pytest-cov; extra == "tests" + cat /builddir/build/BUILD/python-xbout-0.3.6-build/python-xbout-0.3.6-6.fc44.x86_64-pyproject-buildrequires + rm -rfv xbout-0.3.6.dist-info/ removed 'xbout-0.3.6.dist-info/licenses/LICENSE' removed directory 'xbout-0.3.6.dist-info/licenses' removed 'xbout-0.3.6.dist-info/METADATA' removed 'xbout-0.3.6.dist-info/top_level.txt' removed directory 'xbout-0.3.6.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-xbout-0.3.6-6.fc44.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: Copr repository 100% | 23.1 KiB/s | 1.6 KiB | 00m00s fedora 100% | 211.3 KiB/s | 27.3 KiB | 00m00s Repositories loaded. Package "pyproject-rpm-macros-1.18.3-2.fc43.noarch" is already installed. Package "python3-boutdata-0.3.0-5.fc44.noarch" is already installed. Package "python3-devel-3.14.0~rc2-1.fc44.x86_64" is already installed. Package "python3-sphinx-autodoc-typehints-3.1.0-4.fc44.noarch" is already installed. Package "python3-animatplot-0.4.5-3.fc44.noarch" is already installed. Package "python3-boutdata-0.3.0-5.fc44.noarch" is already installed. Package "python3-dask-2025.4.1-5.fc44.noarch" is already installed. Package "python3-dask+array-2025.4.1-5.fc44.noarch" is already installed. Package "python3-gelidum-0.7.0-9.fc44.noarch" is already installed. Package "python3-natsort-8.4.0-7.fc44.noarch" is already installed. Package "python3-netcdf4-1.7.2-8.fc44.x86_64" is already installed. Package "python3-packaging-25.0-5.fc44.noarch" is already installed. Package "python3-pillow-11.3.0-4.fc44.x86_64" is already installed. Package "python3-pip-25.2-2.fc44.noarch" is already installed. Package "python3-pytest-8.3.5-8.fc44.noarch" is already installed. Package "python3-setuptools-78.1.1-12.fc44.noarch" is already installed. Package "python3-setuptools_scm-8.3.1-7.fc44.noarch" is already installed. Package "python3-setuptools_scm+toml-8.3.1-7.fc44.noarch" is already installed. Package "python3-sphinx-1:8.2.3-10.fc44.noarch" is already installed. Package "python3-wheel-1:0.45.1-17.fc44.noarch" is already installed. Package "python3-xarray-2025.4.0-2.fc44.noarch" is already installed. Nothing to do. Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1753401600 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.NV3o6U + umask 022 + cd /builddir/build/BUILD/python-xbout-0.3.6-build + cd xbout-0.3.6 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-xbout-0.3.6-build/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-xbout-0.3.6-build/.pyproject-builddir + RPM_TOXENV=py314 + FEDORA=44 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-xbout-0.3.6-build/pyproject-wheeldir --output /builddir/build/BUILD/python-xbout-0.3.6-build/python-xbout-0.3.6-6.fc44.x86_64-pyproject-buildrequires -r Handling setuptools >= 65 from build-system.requires Requirement satisfied: setuptools >= 65 (installed: setuptools 78.1.1) Handling setuptools_scm[toml] >= 7 from build-system.requires Requirement satisfied: setuptools_scm[toml] >= 7 (installed: setuptools_scm 8.3.1) (extras are currently not checked) Handling wheel >= 0.29.0 from build-system.requires Requirement satisfied: wheel >= 0.29.0 (installed: wheel 0.45.1) /usr/lib/python3.14/site-packages/setuptools_scm/git.py:310: UserWarning: git archive did not support describe output warnings.warn("git archive did not support describe output") /usr/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). By 2026-Feb-18, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: Apache Software License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3.14/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: Apache Software License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running egg_info writing xbout.egg-info/PKG-INFO writing dependency_links to xbout.egg-info/dependency_links.txt writing requirements to xbout.egg-info/requires.txt writing top-level names to xbout.egg-info/top_level.txt WARNING setuptools_scm._file_finders.git git archive detected - fallback to listing all files adding license file 'LICENSE' writing manifest file 'xbout.egg-info/SOURCES.txt' /usr/lib/python3.14/site-packages/setuptools_scm/git.py:310: UserWarning: git archive did not support describe output warnings.warn("git archive did not support describe output") /usr/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). By 2026-Feb-18, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: Apache Software License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3.14/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: Apache Software License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running dist_info writing xbout.egg-info/PKG-INFO writing dependency_links to xbout.egg-info/dependency_links.txt writing requirements to xbout.egg-info/requires.txt writing top-level names to xbout.egg-info/top_level.txt WARNING setuptools_scm._file_finders.git git archive detected - fallback to listing all files adding license file 'LICENSE' writing manifest file 'xbout.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/xbout-0.3.6.dist-info' Handling xarray>=0.18.0 from hook generated metadata: Requires-Dist (xbout) Requirement satisfied: xarray>=0.18.0 (installed: xarray 2025.4.0) Handling boutdata>=0.1.4 from hook generated metadata: Requires-Dist (xbout) Requirement satisfied: boutdata>=0.1.4 (installed: boutdata 0.3.0) Handling dask[array]>=2.10.0 from hook generated metadata: Requires-Dist (xbout) Requirement satisfied: dask[array]>=2.10.0 (installed: dask 2025.4.1) (extras are currently not checked) Handling gelidum>=0.5.3 from hook generated metadata: Requires-Dist (xbout) Requirement satisfied: gelidum>=0.5.3 (installed: gelidum 0.7.0) Handling natsort>=5.5.0 from hook generated metadata: Requires-Dist (xbout) Requirement satisfied: natsort>=5.5.0 (installed: natsort 8.4.0) Handling matplotlib!=3.3.0,!=3.3.1,!=3.3.2,>=3.1.1 from hook generated metadata: Requires-Dist (xbout) Requirement satisfied: matplotlib!=3.3.0,!=3.3.1,!=3.3.2,>=3.1.1 (installed: matplotlib 3.10.5) Handling animatplot-ng>=0.4.2 from hook generated metadata: Requires-Dist (xbout) Requirement satisfied: animatplot-ng>=0.4.2 (installed: animatplot-ng 0.4.5) Handling netcdf4>=1.4.0 from hook generated metadata: Requires-Dist (xbout) Requirement satisfied: netcdf4>=1.4.0 (installed: netcdf4 1.7.2) Handling Pillow>=6.1.0 from hook generated metadata: Requires-Dist (xbout) Requirement satisfied: Pillow>=6.1.0 (installed: Pillow 11.3.0) Handling numpy>=1.18.0; extra == "calc" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: numpy>=1.18.0; extra == "calc" Handling scipy>=1.3.0; extra == "calc" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: scipy>=1.3.0; extra == "calc" Handling dask>=2.2.0; extra == "calc" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: dask>=2.2.0; extra == "calc" Handling statsmodels>=0.10.1; extra == "calc" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: statsmodels>=0.10.1; extra == "calc" Handling xrft; extra == "calc" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: xrft; extra == "calc" Handling xhistogram; extra == "calc" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: xhistogram; extra == "calc" Handling sphinx>=5.3; extra == "docs" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: sphinx>=5.3; extra == "docs" Handling sphinx-book-theme>=0.4.0rc1; extra == "docs" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: sphinx-book-theme>=0.4.0rc1; extra == "docs" Handling sphinx_autodoc_typehints>=1.19; extra == "docs" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: sphinx_autodoc_typehints>=1.19; extra == "docs" Handling k3d>=2.8.0; extra == "3d-plot" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: k3d>=2.8.0; extra == "3d-plot" Handling mayavi>=4.7.2; extra == "3d-plot" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: mayavi>=4.7.2; extra == "3d-plot" Handling wand; extra == "3d-plot" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: wand; extra == "3d-plot" Handling pytest>=3.3.0; extra == "tests" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: pytest>=3.3.0; extra == "tests" Handling pytest-cov; extra == "tests" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: pytest-cov; extra == "tests" + cat /builddir/build/BUILD/python-xbout-0.3.6-build/python-xbout-0.3.6-6.fc44.x86_64-pyproject-buildrequires + rm -rfv xbout-0.3.6.dist-info/ removed 'xbout-0.3.6.dist-info/licenses/LICENSE' removed directory 'xbout-0.3.6.dist-info/licenses' removed 'xbout-0.3.6.dist-info/METADATA' removed 'xbout-0.3.6.dist-info/top_level.txt' removed directory 'xbout-0.3.6.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.ZRZdLM + umask 022 + cd /builddir/build/BUILD/python-xbout-0.3.6-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd xbout-0.3.6 + mkdir -p /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/.pyproject-builddir + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/pyproject-wheeldir Processing /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6 Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) /usr/lib/python3.14/site-packages/setuptools_scm/git.py:310: UserWarning: git archive did not support describe output warnings.warn("git archive did not support describe output") /usr/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). By 2026-Feb-18, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: Apache Software License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3.14/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: Apache Software License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running dist_info creating /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/.pyproject-builddir/pip-modern-metadata-hgbhsxef/xbout.egg-info writing /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/.pyproject-builddir/pip-modern-metadata-hgbhsxef/xbout.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/.pyproject-builddir/pip-modern-metadata-hgbhsxef/xbout.egg-info/dependency_links.txt writing requirements to /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/.pyproject-builddir/pip-modern-metadata-hgbhsxef/xbout.egg-info/requires.txt writing top-level names to /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/.pyproject-builddir/pip-modern-metadata-hgbhsxef/xbout.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/.pyproject-builddir/pip-modern-metadata-hgbhsxef/xbout.egg-info/SOURCES.txt' WARNING setuptools_scm._file_finders.git git archive detected - fallback to listing all files adding license file 'LICENSE' writing manifest file '/builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/.pyproject-builddir/pip-modern-metadata-hgbhsxef/xbout.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/.pyproject-builddir/pip-modern-metadata-hgbhsxef/xbout-0.3.6.dist-info' Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: xbout Building wheel for xbout (pyproject.toml): started Running command Building wheel for xbout (pyproject.toml) /usr/lib/python3.14/site-packages/setuptools_scm/git.py:310: UserWarning: git archive did not support describe output warnings.warn("git archive did not support describe output") /usr/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). By 2026-Feb-18, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: Apache Software License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3.14/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: Apache Software License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running bdist_wheel running build running build_py creating build/lib/xbout copying xbout/utils.py -> build/lib/xbout copying xbout/region.py -> build/lib/xbout copying xbout/load.py -> build/lib/xbout copying xbout/geometries.py -> build/lib/xbout copying xbout/fastoutput.py -> build/lib/xbout copying xbout/conftest.py -> build/lib/xbout copying xbout/boutdataset.py -> build/lib/xbout copying xbout/boutdataarray.py -> build/lib/xbout copying xbout/_version.py -> build/lib/xbout copying xbout/__init__.py -> build/lib/xbout creating build/lib/xbout/calc copying xbout/calc/turbulence.py -> build/lib/xbout/calc copying xbout/calc/__init__.py -> build/lib/xbout/calc creating build/lib/xbout/plotting copying xbout/plotting/utils.py -> build/lib/xbout/plotting copying xbout/plotting/plotfuncs.py -> build/lib/xbout/plotting copying xbout/plotting/animate.py -> build/lib/xbout/plotting copying xbout/plotting/__init__.py -> build/lib/xbout/plotting running egg_info writing xbout.egg-info/PKG-INFO writing dependency_links to xbout.egg-info/dependency_links.txt writing requirements to xbout.egg-info/requires.txt writing top-level names to xbout.egg-info/top_level.txt WARNING setuptools_scm._file_finders.git git archive detected - fallback to listing all files adding license file 'LICENSE' writing manifest file 'xbout.egg-info/SOURCES.txt' /usr/lib/python3.14/site-packages/setuptools/command/build_py.py:212: _Warning: Package 'xbout.calc.tests' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'xbout.calc.tests' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'xbout.calc.tests' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'xbout.calc.tests' to be distributed and are already explicitly excluding 'xbout.calc.tests' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.14/site-packages/setuptools/command/build_py.py:212: _Warning: Package 'xbout.tests' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'xbout.tests' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'xbout.tests' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'xbout.tests' to be distributed and are already explicitly excluding 'xbout.tests' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.14/site-packages/setuptools/command/build_py.py:212: _Warning: Package 'xbout.tests.data.options' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'xbout.tests.data.options' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'xbout.tests.data.options' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'xbout.tests.data.options' to be distributed and are already explicitly excluding 'xbout.tests.data.options' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.14/site-packages/setuptools/command/build_py.py:212: _Warning: Package 'xbout.tests.data.restart' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'xbout.tests.data.restart' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'xbout.tests.data.restart' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'xbout.tests.data.restart' to be distributed and are already explicitly excluding 'xbout.tests.data.restart' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.14/site-packages/setuptools/command/build_py.py:212: _Warning: Package 'xbout.tests.inputs' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'xbout.tests.inputs' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'xbout.tests.inputs' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'xbout.tests.inputs' to be distributed and are already explicitly excluding 'xbout.tests.inputs' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) creating build/lib/xbout/tests copying xbout/tests/__init__.py -> build/lib/xbout/tests copying xbout/tests/conftest.py -> build/lib/xbout/tests copying xbout/tests/test_against_collect.py -> build/lib/xbout/tests copying xbout/tests/test_animate.py -> build/lib/xbout/tests copying xbout/tests/test_boutdataarray.py -> build/lib/xbout/tests copying xbout/tests/test_boutdataset.py -> build/lib/xbout/tests copying xbout/tests/test_fastoutput.py -> build/lib/xbout/tests copying xbout/tests/test_geometries.py -> build/lib/xbout/tests copying xbout/tests/test_grid.py -> build/lib/xbout/tests copying xbout/tests/test_init.py -> build/lib/xbout/tests copying xbout/tests/test_load.py -> build/lib/xbout/tests copying xbout/tests/test_plot.py -> build/lib/xbout/tests copying xbout/tests/test_region.py -> build/lib/xbout/tests copying xbout/tests/test_utils.py -> build/lib/xbout/tests copying xbout/tests/utils_for_tests.py -> build/lib/xbout/tests creating build/lib/xbout/tests/data/options copying xbout/tests/data/options/BOUT.inp -> build/lib/xbout/tests/data/options creating build/lib/xbout/tests/data/restart copying xbout/tests/data/restart/BOUT.restart.0.nc -> build/lib/xbout/tests/data/restart copying xbout/tests/data/restart/BOUT.restart.1.nc -> build/lib/xbout/tests/data/restart copying xbout/tests/data/restart/README.md -> build/lib/xbout/tests/data/restart creating build/lib/xbout/tests/inputs copying xbout/tests/inputs/s-alpha.inp -> build/lib/xbout/tests/inputs creating build/lib/xbout/calc/tests copying xbout/calc/tests/test_turbulence.py -> build/lib/xbout/calc/tests installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/xbout creating build/bdist.linux-x86_64/wheel/xbout/tests creating build/bdist.linux-x86_64/wheel/xbout/tests/inputs copying build/lib/xbout/tests/inputs/s-alpha.inp -> build/bdist.linux-x86_64/wheel/./xbout/tests/inputs creating build/bdist.linux-x86_64/wheel/xbout/tests/data creating build/bdist.linux-x86_64/wheel/xbout/tests/data/restart copying build/lib/xbout/tests/data/restart/README.md -> build/bdist.linux-x86_64/wheel/./xbout/tests/data/restart copying build/lib/xbout/tests/data/restart/BOUT.restart.1.nc -> build/bdist.linux-x86_64/wheel/./xbout/tests/data/restart copying build/lib/xbout/tests/data/restart/BOUT.restart.0.nc -> build/bdist.linux-x86_64/wheel/./xbout/tests/data/restart creating build/bdist.linux-x86_64/wheel/xbout/tests/data/options copying build/lib/xbout/tests/data/options/BOUT.inp -> build/bdist.linux-x86_64/wheel/./xbout/tests/data/options copying build/lib/xbout/tests/utils_for_tests.py -> build/bdist.linux-x86_64/wheel/./xbout/tests copying build/lib/xbout/tests/test_utils.py -> build/bdist.linux-x86_64/wheel/./xbout/tests copying build/lib/xbout/tests/test_region.py -> build/bdist.linux-x86_64/wheel/./xbout/tests copying build/lib/xbout/tests/test_plot.py -> build/bdist.linux-x86_64/wheel/./xbout/tests copying build/lib/xbout/tests/test_load.py -> build/bdist.linux-x86_64/wheel/./xbout/tests copying build/lib/xbout/tests/test_init.py -> build/bdist.linux-x86_64/wheel/./xbout/tests copying build/lib/xbout/tests/test_grid.py -> build/bdist.linux-x86_64/wheel/./xbout/tests copying build/lib/xbout/tests/test_geometries.py -> build/bdist.linux-x86_64/wheel/./xbout/tests copying build/lib/xbout/tests/test_fastoutput.py -> build/bdist.linux-x86_64/wheel/./xbout/tests copying build/lib/xbout/tests/test_boutdataset.py -> build/bdist.linux-x86_64/wheel/./xbout/tests copying build/lib/xbout/tests/test_boutdataarray.py -> build/bdist.linux-x86_64/wheel/./xbout/tests copying build/lib/xbout/tests/test_animate.py -> build/bdist.linux-x86_64/wheel/./xbout/tests copying build/lib/xbout/tests/test_against_collect.py -> build/bdist.linux-x86_64/wheel/./xbout/tests copying build/lib/xbout/tests/conftest.py -> build/bdist.linux-x86_64/wheel/./xbout/tests copying build/lib/xbout/tests/__init__.py -> build/bdist.linux-x86_64/wheel/./xbout/tests creating build/bdist.linux-x86_64/wheel/xbout/plotting copying build/lib/xbout/plotting/__init__.py -> build/bdist.linux-x86_64/wheel/./xbout/plotting copying build/lib/xbout/plotting/animate.py -> build/bdist.linux-x86_64/wheel/./xbout/plotting copying build/lib/xbout/plotting/plotfuncs.py -> build/bdist.linux-x86_64/wheel/./xbout/plotting copying build/lib/xbout/plotting/utils.py -> build/bdist.linux-x86_64/wheel/./xbout/plotting creating build/bdist.linux-x86_64/wheel/xbout/calc creating build/bdist.linux-x86_64/wheel/xbout/calc/tests copying build/lib/xbout/calc/tests/test_turbulence.py -> build/bdist.linux-x86_64/wheel/./xbout/calc/tests copying build/lib/xbout/calc/__init__.py -> build/bdist.linux-x86_64/wheel/./xbout/calc copying build/lib/xbout/calc/turbulence.py -> build/bdist.linux-x86_64/wheel/./xbout/calc copying build/lib/xbout/__init__.py -> build/bdist.linux-x86_64/wheel/./xbout copying build/lib/xbout/_version.py -> build/bdist.linux-x86_64/wheel/./xbout copying build/lib/xbout/boutdataarray.py -> build/bdist.linux-x86_64/wheel/./xbout copying build/lib/xbout/boutdataset.py -> build/bdist.linux-x86_64/wheel/./xbout copying build/lib/xbout/conftest.py -> build/bdist.linux-x86_64/wheel/./xbout copying build/lib/xbout/fastoutput.py -> build/bdist.linux-x86_64/wheel/./xbout copying build/lib/xbout/geometries.py -> build/bdist.linux-x86_64/wheel/./xbout copying build/lib/xbout/load.py -> build/bdist.linux-x86_64/wheel/./xbout copying build/lib/xbout/region.py -> build/bdist.linux-x86_64/wheel/./xbout copying build/lib/xbout/utils.py -> build/bdist.linux-x86_64/wheel/./xbout running install_egg_info Copying xbout.egg-info to build/bdist.linux-x86_64/wheel/./xbout-0.3.6-py3.14.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/xbout-0.3.6.dist-info/WHEEL creating '/builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/.pyproject-builddir/pip-wheel-7t3nckj4/.tmp-2lzl8w0s/xbout-0.3.6-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'xbout/__init__.py' adding 'xbout/_version.py' adding 'xbout/boutdataarray.py' adding 'xbout/boutdataset.py' adding 'xbout/conftest.py' adding 'xbout/fastoutput.py' adding 'xbout/geometries.py' adding 'xbout/load.py' adding 'xbout/region.py' adding 'xbout/utils.py' adding 'xbout/calc/__init__.py' adding 'xbout/calc/turbulence.py' adding 'xbout/calc/tests/test_turbulence.py' adding 'xbout/plotting/__init__.py' adding 'xbout/plotting/animate.py' adding 'xbout/plotting/plotfuncs.py' adding 'xbout/plotting/utils.py' adding 'xbout/tests/__init__.py' adding 'xbout/tests/conftest.py' adding 'xbout/tests/test_against_collect.py' adding 'xbout/tests/test_animate.py' adding 'xbout/tests/test_boutdataarray.py' adding 'xbout/tests/test_boutdataset.py' adding 'xbout/tests/test_fastoutput.py' adding 'xbout/tests/test_geometries.py' adding 'xbout/tests/test_grid.py' adding 'xbout/tests/test_init.py' adding 'xbout/tests/test_load.py' adding 'xbout/tests/test_plot.py' adding 'xbout/tests/test_region.py' adding 'xbout/tests/test_utils.py' adding 'xbout/tests/utils_for_tests.py' adding 'xbout/tests/data/options/BOUT.inp' adding 'xbout/tests/data/restart/BOUT.restart.0.nc' adding 'xbout/tests/data/restart/BOUT.restart.1.nc' adding 'xbout/tests/data/restart/README.md' adding 'xbout/tests/inputs/s-alpha.inp' adding 'xbout-0.3.6.dist-info/licenses/LICENSE' adding 'xbout-0.3.6.dist-info/METADATA' adding 'xbout-0.3.6.dist-info/WHEEL' adding 'xbout-0.3.6.dist-info/top_level.txt' adding 'xbout-0.3.6.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Building wheel for xbout (pyproject.toml): finished with status 'done' Created wheel for xbout: filename=xbout-0.3.6-py3-none-any.whl size=140106 sha256=575abd49520344d3a4fb9bcb9d2eee9b5fd17be61f895b0028993f92e53f1c71 Stored in directory: /builddir/.cache/pip/wheels/08/3c/3b/a041473b714187cd781301a93e81a37e416c8f0a7d803d2588 Successfully built xbout + PYTHONPATH=/builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6 + sphinx-build-3 docs html Running Sphinx v8.2.3 loading translations [en]... done making output directory... done Converting `source_suffix = '.rst'` to `source_suffix = {'.rst': 'restructuredtext'}`. [autosummary] generating autosummary for: accessor_methods.rst, api.rst, extending_xbout.rst, index.rst, loading_data.rst [autosummary] generating autosummary for: /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.rst [autosummary] generating autosummary for: /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.boutdataarray.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.boutdataset.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.calc.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.conftest.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.fastoutput.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.geometries.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.load.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.plotting.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.region.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.tests.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.utils.rst [autosummary] generating autosummary for: /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.boutdataarray.BoutDataArrayAccessor.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.boutdataset.BoutDatasetAccessor.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.calc.turbulence.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.conftest.pytest_addoption.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.conftest.pytest_collection_modifyitems.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.conftest.pytest_configure.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.fastoutput.open_fastoutput.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.geometries.UnregisteredGeometryError.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.geometries.add_fci_geometry_coords.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.geometries.add_s_alpha_geometry_coords.rst, ..., /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.tests.test_boutdataset.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.tests.test_fastoutput.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.tests.test_geometries.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.tests.test_grid.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.tests.test_init.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.tests.test_load.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.tests.test_plot.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.tests.test_region.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.tests.test_utils.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.tests.utils_for_tests.rst [autosummary] generating autosummary for: /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.calc.turbulence.rms.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.plotting.animate.animate_line.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.plotting.animate.animate_pcolormesh.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.plotting.animate.animate_poloidal.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.plotting.plotfuncs.plot2d_wrapper.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.plotting.plotfuncs.plot3d.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.plotting.plotfuncs.plot_regions.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.plotting.utils.plot_separatrices.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.plotting.utils.plot_separatrix.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.plotting.utils.plot_targets.rst, ..., /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.tests.test_load.test_check_extensions.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.tests.test_load.test_set_fci_coords.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.tests.test_plot.TestPlot.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.tests.test_region.TestRegion.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.tests.test_utils.TestUtils.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.tests.utils_for_tests.create_bout_ds.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.tests.utils_for_tests.create_bout_ds_list.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.tests.utils_for_tests.create_bout_grid_ds.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.tests.utils_for_tests.load_example_input.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.tests.utils_for_tests.set_geometry_from_input_file.rst loading intersphinx inventory 'python' from https://docs.python.org/3/objects.inv ... loading intersphinx inventory 'numpy' from https://numpy.org/doc/stable/objects.inv ... loading intersphinx inventory 'scipy' from https://docs.scipy.org/doc/scipy/objects.inv ... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://docs.python.org/3/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3/objects.inv (Caused by NameResolutionError(": Failed to resolve 'docs.python.org' ([Errno -3] Temporary failure in name resolution)")) loading intersphinx inventory 'xarray' from https://docs.xarray.dev/en/latest/objects.inv ... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://docs.scipy.org/doc/scipy/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.scipy.org', port=443): Max retries exceeded with url: /doc/scipy/objects.inv (Caused by NameResolutionError(": Failed to resolve 'docs.scipy.org' ([Errno -3] Temporary failure in name resolution)")) WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://numpy.org/doc/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='numpy.org', port=443): Max retries exceeded with url: /doc/stable/objects.inv (Caused by NameResolutionError(": Failed to resolve 'numpy.org' ([Errno -3] Temporary failure in name resolution)")) loading intersphinx inventory 'mayavi' from https://docs.enthought.com/mayavi/mayavi/objects.inv ... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://docs.xarray.dev/en/latest/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.xarray.dev', port=443): Max retries exceeded with url: /en/latest/objects.inv (Caused by NameResolutionError(": Failed to resolve 'docs.xarray.dev' ([Errno -3] Temporary failure in name resolution)")) WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://docs.enthought.com/mayavi/mayavi/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.enthought.com', port=443): Max retries exceeded with url: /mayavi/mayavi/objects.inv (Caused by NameResolutionError(": Failed to resolve 'docs.enthought.com' ([Errno -3] Temporary failure in name resolution)")) building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 5 source files that are out of date updating environment: [new config] 105 added, 0 changed, 0 removed reading sources... [ 1%] accessor_methods reading sources... [ 2%] api reading sources... [ 3%] extending_xbout reading sources... [ 4%] generated/xbout reading sources... [ 5%] generated/xbout.boutdataarray reading sources... [ 6%] generated/xbout.boutdataarray.BoutDataArrayAccessor reading sources... [ 7%] generated/xbout.boutdataset reading sources... [ 8%] generated/xbout.boutdataset.BoutDatasetAccessor reading sources... [ 9%] generated/xbout.calc reading sources... [ 10%] generated/xbout.calc.turbulence reading sources... [ 10%] generated/xbout.calc.turbulence.rms reading sources... [ 11%] generated/xbout.conftest reading sources... [ 12%] generated/xbout.conftest.pytest_addoption reading sources... [ 13%] generated/xbout.conftest.pytest_collection_modifyitems reading sources... [ 14%] generated/xbout.conftest.pytest_configure reading sources... [ 15%] generated/xbout.fastoutput reading sources... [ 16%] generated/xbout.fastoutput.open_fastoutput reading sources... [ 17%] generated/xbout.geometries reading sources... [ 18%] generated/xbout.geometries.UnregisteredGeometryError reading sources... [ 19%] generated/xbout.geometries.add_fci_geometry_coords reading sources... [ 20%] generated/xbout.geometries.add_s_alpha_geometry_coords reading sources... [ 21%] generated/xbout.geometries.add_toroidal_geometry_coords reading sources... [ 22%] generated/xbout.geometries.apply_geometry reading sources... [ 23%] generated/xbout.geometries.register_geometry reading sources... [ 24%] generated/xbout.load reading sources... [ 25%] generated/xbout.load.collect reading sources... [ 26%] generated/xbout.load.open_boutdataset reading sources... [ 27%] generated/xbout.plotting reading sources... [ 28%] generated/xbout.plotting.animate reading sources... [ 29%] generated/xbout.plotting.animate.animate_line reading sources... [ 30%] generated/xbout.plotting.animate.animate_pcolormesh reading sources... [ 30%] generated/xbout.plotting.animate.animate_poloidal reading sources... [ 31%] generated/xbout.plotting.plotfuncs reading sources... [ 32%] generated/xbout.plotting.plotfuncs.plot2d_wrapper reading sources... [ 33%] generated/xbout.plotting.plotfuncs.plot3d reading sources... [ 34%] generated/xbout.plotting.plotfuncs.plot_regions reading sources... [ 35%] generated/xbout.plotting.utils reading sources... [ 36%] generated/xbout.plotting.utils.plot_separatrices reading sources... [ 37%] generated/xbout.plotting.utils.plot_separatrix reading sources... [ 38%] generated/xbout.plotting.utils.plot_targets reading sources... [ 39%] generated/xbout.region reading sources... [ 40%] generated/xbout.region.Region reading sources... [ 41%] generated/xbout.region.topology_connected_double_null reading sources... [ 42%] generated/xbout.region.topology_core reading sources... [ 43%] generated/xbout.region.topology_limiter reading sources... [ 44%] generated/xbout.region.topology_lower_disconnected_double_null reading sources... [ 45%] generated/xbout.region.topology_single_null reading sources... [ 46%] generated/xbout.region.topology_sol reading sources... [ 47%] generated/xbout.region.topology_upper_disconnected_double_null reading sources... [ 48%] generated/xbout.region.topology_xpoint reading sources... [ 49%] generated/xbout.tests reading sources... [ 50%] generated/xbout.tests.conftest reading sources... [ 50%] generated/xbout.tests.conftest.bout_xyt_example_files reading sources... [ 51%] generated/xbout.tests.conftest.create_example_files_fci reading sources... [ 52%] generated/xbout.tests.conftest.create_example_grid_file_fci reading sources... [ 53%] generated/xbout.tests.test_against_collect reading sources... [ 54%] generated/xbout.tests.test_against_collect.TestAccuracyAgainstOldCollect reading sources... [ 55%] generated/xbout.tests.test_against_collect.test_speed_against_old_collect reading sources... [ 56%] generated/xbout.tests.test_animate reading sources... [ 57%] generated/xbout.tests.test_animate.TestAnimate reading sources... [ 58%] generated/xbout.tests.test_animate.create_test_file reading sources... [ 59%] generated/xbout.tests.test_boutdataarray reading sources... [ 60%] generated/xbout.tests.test_boutdataarray.TestBoutDataArrayMethods reading sources... [ 61%] generated/xbout.tests.test_boutdataset reading sources... [ 62%] generated/xbout.tests.test_boutdataset.TestBoutDatasetIsXarrayDataset reading sources... [ 63%] generated/xbout.tests.test_boutdataset.TestBoutDatasetMethods reading sources... [ 64%] generated/xbout.tests.test_boutdataset.TestLoadInputFile reading sources... [ 65%] generated/xbout.tests.test_boutdataset.TestLoadLogFile reading sources... [ 66%] generated/xbout.tests.test_boutdataset.TestSave reading sources... [ 67%] generated/xbout.tests.test_boutdataset.TestSaveRestart reading sources... [ 68%] generated/xbout.tests.test_fastoutput reading sources... [ 69%] generated/xbout.tests.test_fastoutput.TestFastOutput reading sources... [ 70%] generated/xbout.tests.test_fastoutput.make_fastoutput reading sources... [ 70%] generated/xbout.tests.test_fastoutput.make_fastoutput_set reading sources... [ 71%] generated/xbout.tests.test_geometries reading sources... [ 72%] generated/xbout.tests.test_geometries.TestGeometryRegistration reading sources... [ 73%] generated/xbout.tests.test_grid reading sources... [ 74%] generated/xbout.tests.test_grid.TestOpenGrid reading sources... [ 75%] generated/xbout.tests.test_grid.create_example_grid_file reading sources... [ 76%] generated/xbout.tests.test_init reading sources... [ 77%] generated/xbout.tests.test_init.test_version reading sources... [ 78%] generated/xbout.tests.test_load reading sources... [ 79%] generated/xbout.tests.test_load.TestArrange reading sources... [ 80%] generated/xbout.tests.test_load.TestOpen reading sources... [ 81%] generated/xbout.tests.test_load.TestPathHandling reading sources... [ 82%] generated/xbout.tests.test_load.TestStripMetadata reading sources... [ 83%] generated/xbout.tests.test_load.TestTrim reading sources... [ 84%] generated/xbout.tests.test_load.create_filepaths reading sources... [ 85%] generated/xbout.tests.test_load.test_check_extensions reading sources... [ 86%] generated/xbout.tests.test_load.test_set_fci_coords reading sources... [ 87%] generated/xbout.tests.test_plot reading sources... [ 88%] generated/xbout.tests.test_plot.TestPlot reading sources... [ 89%] generated/xbout.tests.test_region reading sources... [ 90%] generated/xbout.tests.test_region.TestRegion reading sources... [ 90%] generated/xbout.tests.test_utils reading sources... [ 91%] generated/xbout.tests.test_utils.TestUtils reading sources... [ 92%] generated/xbout.tests.utils_for_tests reading sources... [ 93%] generated/xbout.tests.utils_for_tests.create_bout_ds reading sources... [ 94%] generated/xbout.tests.utils_for_tests.create_bout_ds_list reading sources... [ 95%] generated/xbout.tests.utils_for_tests.create_bout_grid_ds reading sources... [ 96%] generated/xbout.tests.utils_for_tests.load_example_input reading sources... [ 97%] generated/xbout.tests.utils_for_tests.set_geometry_from_input_file reading sources... [ 98%] generated/xbout.utils reading sources... [ 99%] index reading sources... [100%] loading_data looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... WARNING: unsupported theme option 'repository_url' given WARNING: unsupported theme option 'repository_branch' given WARNING: unsupported theme option 'path_to_docs' given WARNING: unsupported theme option 'use_edit_page_button' given WARNING: unsupported theme option 'use_repository_button' given WARNING: unsupported theme option 'use_issues_button' given WARNING: unsupported theme option 'home_page_in_toc' given done copying assets... copying static files... Writing evaluated template result to /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/html/_static/language_data.js Writing evaluated template result to /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/html/_static/documentation_options.js Writing evaluated template result to /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/html/_static/basic.css Writing evaluated template result to /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/html/_static/alabaster.css copying static files: done copying extra files... copying extra files: done copying assets: done writing output... [ 1%] accessor_methods writing output... [ 2%] api writing output... [ 3%] extending_xbout writing output... [ 4%] generated/xbout writing output... [ 5%] generated/xbout.boutdataarray writing output... [ 6%] generated/xbout.boutdataarray.BoutDataArrayAccessor writing output... [ 7%] generated/xbout.boutdataset writing output... 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[100%] loading_data /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/accessor_methods.rst:4: WARNING: 'any' reference target not found: xarray.Dataset [ref.any] /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/accessor_methods.rst:4: WARNING: 'any' reference target not found: xarray.DataArray [ref.any] /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/xbout/boutdataarray.py:docstring of xbout.boutdataarray.BoutDataArrayAccessor:4: WARNING: 'any' reference target not found: BoutOptionsFile [ref.any] /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/xbout/boutdataarray.py:docstring of xbout.boutdataarray.BoutDataArrayAccessor.interpolate_to_cartesian:3: WARNING: 'any' reference target not found: numpy.float32 [ref.any] /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/xbout/boutdataarray.py:docstring of xbout.boutdataarray.BoutDataArrayAccessor.interpolate_to_cartesian:14: WARNING: 'any' reference target not found: numpy.float32 [ref.any] /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/xbout/boutdataarray.py:docstring of xbout.boutdataarray.BoutDataArrayAccessor.interpolate_to_cartesian:16: WARNING: 'any' reference target not found: scipy.interpolate.RegularGridInterpolator [ref.any] /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/xbout/boutdataset.py:docstring of xbout.boutdataset.BoutDatasetAccessor:4: WARNING: 'any' reference target not found: BoutOptionsFile [ref.any] /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/xbout/boutdataset.py:docstring of xbout.boutdataset.BoutDatasetAccessor.integrate_midpoints:36: WARNING: 'any' reference target not found: ... [ref.any] /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/xbout/boutdataset.py:docstring of xbout.boutdataset.BoutDatasetAccessor.interpolate_to_cartesian:3: WARNING: 'any' reference target not found: numpy.float32 [ref.any] /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/xbout/boutdataset.py:docstring of xbout.boutdataset.BoutDatasetAccessor.interpolate_to_cartesian:18: WARNING: 'any' reference target not found: numpy.float32 [ref.any] /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/xbout/boutdataset.py:docstring of xbout.boutdataset.BoutDatasetAccessor.interpolate_to_cartesian:21: WARNING: 'any' reference target not found: scipy.interpolate.RegularGridInterpolator [ref.any] /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/xbout/load.py:docstring of xbout.load.open_boutdataset:20: WARNING: 'any' reference target not found: xarray.open_dataset [ref.any] /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/xbout/load.py:docstring of xbout.load.open_boutdataset:94: WARNING: 'any' reference target not found: xarray.open_mfdataset [ref.any] /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/xbout/load.py:docstring of xbout.load.open_boutdataset:94: WARNING: 'any' reference target not found: xarray.open_dataset [ref.any] generating indices... /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/xbout/plotting/plotfuncs.py:docstring of xbout.plotting.plotfuncs.plot2d_wrapper:3: WARNING: 'any' reference target not found: xarray.DataArray.plot [ref.any] /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/xbout/plotting/plotfuncs.py:docstring of xbout.plotting.plotfuncs.plot3d:68: WARNING: 'any' reference target not found: mayavi.mlab.view [ref.any] /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/loading_data.rst:12: WARNING: 'any' reference target not found: xarray.Dataset [ref.any] genindex py-modindex done highlighting module code... 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[ 72%] xbout.tests.test_geometries highlighting module code... [ 76%] xbout.tests.test_grid highlighting module code... [ 80%] xbout.tests.test_init highlighting module code... [ 84%] xbout.tests.test_load highlighting module code... [ 88%] xbout.tests.test_plot highlighting module code... [ 92%] xbout.tests.test_region highlighting module code... [ 96%] xbout.tests.test_utils highlighting module code... [100%] xbout.tests.utils_for_tests writing additional pages... search done copying images... [100%] images/n_over_t.gif dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 29 warnings. The HTML pages are in html. + rm -rf html/.doctrees html/.buildinfo + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.yeJUzb + umask 022 + cd /builddir/build/BUILD/python-xbout-0.3.6-build + '[' /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT ++ dirname /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT + mkdir -p /builddir/build/BUILD/python-xbout-0.3.6-build + mkdir /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd xbout-0.3.6 ++ ls /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/pyproject-wheeldir/xbout-0.3.6-py3-none-any.whl ++ xargs basename --multiple ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' + specifier=xbout==0.3.6 + '[' -z xbout==0.3.6 ']' + TMPDIR=/builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/pyproject-wheeldir xbout==0.3.6 Using pip 25.2 from /usr/lib/python3.14/site-packages/pip (python 3.14) Looking in links: /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/pyproject-wheeldir Processing ./pyproject-wheeldir/xbout-0.3.6-py3-none-any.whl Installing collected packages: xbout Successfully installed xbout-0.3.6 + '[' -d /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/bin ']' + rm -f /builddir/build/BUILD/python-xbout-0.3.6-build/python-xbout-0.3.6-6.fc44.x86_64-pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib/python3.14/site-packages ']' + site_dirs+=("/usr/lib/python3.14/site-packages") + '[' /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib64/python3.14/site-packages '!=' /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib/python3.14/site-packages ']' + '[' -d /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib64/python3.14/site-packages ']' + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT$site_dir/*.dist-info + echo '%ghost /usr/lib/python3.14/site-packages/xbout-0.3.6.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib/python3.14/site-packages/xbout-0.3.6.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT --record /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib/python3.14/site-packages/xbout-0.3.6.dist-info/RECORD --output /builddir/build/BUILD/python-xbout-0.3.6-build/python-xbout-0.3.6-6.fc44.x86_64-pyproject-record + rm -fv /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib/python3.14/site-packages/xbout-0.3.6.dist-info/RECORD removed '/builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib/python3.14/site-packages/xbout-0.3.6.dist-info/RECORD' + rm -fv /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib/python3.14/site-packages/xbout-0.3.6.dist-info/REQUESTED removed '/builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib/python3.14/site-packages/xbout-0.3.6.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/python-xbout-0.3.6-build/python-xbout-0.3.6-6.fc44.x86_64-pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + RPM_FILES_ESCAPE=4.19 + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/python-xbout-0.3.6-build/python-xbout-0.3.6-6.fc44.x86_64-pyproject-files --output-modules /builddir/build/BUILD/python-xbout-0.3.6-build/python-xbout-0.3.6-6.fc44.x86_64-pyproject-modules --buildroot /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT --sitelib /usr/lib/python3.14/site-packages --sitearch /usr/lib64/python3.14/site-packages --python-version 3.14 --pyproject-record /builddir/build/BUILD/python-xbout-0.3.6-build/python-xbout-0.3.6-6.fc44.x86_64-pyproject-record --prefix /usr xbout + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip /usr/bin/strip + /usr/lib/rpm/brp-strip-comment-note /usr/bin/strip /usr/bin/objdump + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + /usr/lib/rpm/redhat/brp-python-rpm-in-distinfo + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 Bytecompiling .py files below /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib/python3.14 using python3.14 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j4 /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib/python3.14/site-packages/xbout/__pycache__/utils.cpython-314.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib/python3.14/site-packages/xbout/__pycache__/load.cpython-314.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib/python3.14/site-packages/xbout/__pycache__/region.cpython-314.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib/python3.14/site-packages/xbout/__pycache__/boutdataset.cpython-314.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib/python3.14/site-packages/xbout/__pycache__/geometries.cpython-314.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib/python3.14/site-packages/xbout/__pycache__/conftest.cpython-314.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib/python3.14/site-packages/xbout/__pycache__/load.cpython-314.pyc: replacing with normalized version /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib/python3.14/site-packages/xbout/__pycache__/fastoutput.cpython-314.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib/python3.14/site-packages/xbout/__pycache__/_version.cpython-314.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib/python3.14/site-packages/xbout/__pycache__/geometries.cpython-314.pyc: replacing with normalized version /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib/python3.14/site-packages/xbout/__pycache__/__init__.cpython-314.opt-1.pyc: rewriting with normalized contents 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/builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib/python3.14/site-packages/xbout/calc/tests/__pycache__/test_turbulence.cpython-314.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib/python3.14/site-packages/xbout/plotting/__pycache__/plotfuncs.cpython-314.opt-1.pyc: rewriting with normalized contents Scanned 21 directories and 106 files, processed 43 inodes, 43 modified (22 replaced + 21 rewritten), 0 unsupported format, 0 errors Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.JlVA1Z + umask 022 + cd /builddir/build/BUILD/python-xbout-0.3.6-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd xbout-0.3.6 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + PATH=/builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin + PYTHONPATH=/builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib64/python3.14/site-packages:/builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib/python3.14/site-packages + PYTHONDONTWRITEBYTECODE=1 + PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/.pyproject-builddir' + PYTEST_XDIST_AUTO_NUM_WORKERS=4 + /usr/bin/pytest xbout --long --durations=0 ============================= test session starts ============================== platform linux -- Python 3.14.0rc2, pytest-8.3.5, pluggy-1.6.0 rootdir: /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6 configfile: pyproject.toml collected 796 items xbout/calc/tests/test_turbulence.py ..... [ 0%] xbout/tests/test_against_collect.py FFFFF... [ 1%] xbout/tests/test_animate.py EEEEEEEEEEEEEEEEEEEEEEEsEEEEEEEEEEEEEEE [ 6%] xbout/tests/test_boutdataarray.py FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF [ 11%] FFFFFFFFFFFFFFFFFF [ 13%] xbout/tests/test_boutdataset.py FFFFFFFFFFFFFFFFFFFFFF.FFFFFFFFFFFFFFFFF [ 18%] FFFFFFFFFFFFFFFFFFFFFFFFFFssFFFFFFFFFFFFFFFFFF. [ 24%] xbout/tests/test_fastoutput.py . [ 24%] xbout/tests/test_geometries.py .. [ 24%] xbout/tests/test_grid.py ..... [ 25%] xbout/tests/test_init.py . [ 25%] xbout/tests/test_load.py ..........................FFFFFFFFFFFFsFF....FF [ 31%] Fs...................................................................... [ 40%] ............ [ 42%] xbout/tests/test_plot.py FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF [ 47%] FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF [ 57%] FFFFFFFFFFFFFFFFFFFFFFFFF [ 60%] xbout/tests/test_region.py FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF [ 65%] FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF [ 74%] FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF [ 83%] FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF [ 92%] FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF [ 98%] xbout/tests/test_utils.py ............. [100%] ==================================== ERRORS ==================================== _________________ ERROR at setup of TestAnimate.test_animate2D _________________ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e30b580> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _____ ERROR at setup of TestAnimate.test_animate2D_controls_arg[controls0] _____ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e2d3fa0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _____ ERROR at setup of TestAnimate.test_animate2D_controls_arg[controls1] _____ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6a01a4820> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _____ ERROR at setup of TestAnimate.test_animate2D_controls_arg[controls2] _____ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e5a7f40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _____ ERROR at setup of TestAnimate.test_animate2D_controls_arg[controls3] _____ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e6dad40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _____ ERROR at setup of TestAnimate.test_animate2D_controls_arg[controls4] _____ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e56e4a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _____ ERROR at setup of TestAnimate.test_animate2D_controls_arg[controls5] _____ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e1bc940> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _________________ ERROR at setup of TestAnimate.test_animate1D _________________ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e61b040> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _____ ERROR at setup of TestAnimate.test_animate1D_controls_arg[controls0] _____ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69ea3b100> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _____ ERROR at setup of TestAnimate.test_animate1D_controls_arg[controls1] _____ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69fee2920> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _____ ERROR at setup of TestAnimate.test_animate1D_controls_arg[controls2] _____ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69fb8ee00> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _____ ERROR at setup of TestAnimate.test_animate1D_controls_arg[controls3] _____ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e4e89a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _____ ERROR at setup of TestAnimate.test_animate1D_controls_arg[controls4] _____ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e9a1cc0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _____ ERROR at setup of TestAnimate.test_animate1D_controls_arg[controls5] _____ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6a0145960> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _______________ ERROR at setup of TestAnimate.test_animate_list ________________ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e309360> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError __________ ERROR at setup of TestAnimate.test_animate_list_1d_default __________ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e1bc7c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _________ ERROR at setup of TestAnimate.test_animate_list_1d_multiline _________ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e645b40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _________ ERROR at setup of TestAnimate.test_animate_list_animate_over _________ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6a01528c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ___________ ERROR at setup of TestAnimate.test_animate_list_save_as ____________ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e8eae60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _____________ ERROR at setup of TestAnimate.test_animate_list_fps ______________ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69fe9c580> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ____________ ERROR at setup of TestAnimate.test_animate_list_nrows _____________ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e2d84c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ____________ ERROR at setup of TestAnimate.test_animate_list_ncols _____________ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69eaacc40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ____ ERROR at setup of TestAnimate.test_animate_list_not_enough_nrowsncols _____ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e873b80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _______ ERROR at setup of TestAnimate.test_animate_list_subplots_adjust ________ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e497880> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _____________ ERROR at setup of TestAnimate.test_animate_list_vmin _____________ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69ff5a020> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError __________ ERROR at setup of TestAnimate.test_animate_list_vmin_list ___________ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e8ebb80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _____________ ERROR at setup of TestAnimate.test_animate_list_vmax _____________ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e5154e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError __________ ERROR at setup of TestAnimate.test_animate_list_vmax_list ___________ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e28f9a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ___________ ERROR at setup of TestAnimate.test_animate_list_logscale ___________ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e9a3a60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ________ ERROR at setup of TestAnimate.test_animate_list_logscale_float ________ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6a0152740> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ________ ERROR at setup of TestAnimate.test_animate_list_logscale_list _________ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e6455a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _________ ERROR at setup of TestAnimate.test_animate_list_titles_list __________ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e833220> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ___ ERROR at setup of TestAnimate.test_animate_list_controls_arg[controls0] ____ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e662ec0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ___ ERROR at setup of TestAnimate.test_animate_list_controls_arg[controls1] ____ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e885d80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ___ ERROR at setup of TestAnimate.test_animate_list_controls_arg[controls2] ____ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e1f2d40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ___ ERROR at setup of TestAnimate.test_animate_list_controls_arg[controls3] ____ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69ea8b7c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ___ ERROR at setup of TestAnimate.test_animate_list_controls_arg[controls4] ____ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e0949a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ___ ERROR at setup of TestAnimate.test_animate_list_controls_arg[controls5] ____ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6a0118c40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError =================================== FAILURES =================================== ________________ TestAccuracyAgainstOldCollect.test_single_file ________________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') def test_single_file(self, tmp_path_factory): # Create temp directory for files test_dir = tmp_path_factory.mktemp("test_data") # Generate some test data generated_ds = create_bout_ds(syn_data_type="linear") generated_ds.to_netcdf(test_dir.joinpath("BOUT.dmp.0.nc")) var = "n" expected = old_collect(var, path=test_dir, xguards=True, yguards=False) # Test against new standard - open_boutdataset with pytest.warns(UserWarning): > ds = open_boutdataset(test_dir.joinpath("BOUT.dmp.0.nc")) xbout/tests/test_against_collect.py:26: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6a01a6440> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- mxsub = 2 mysub = 4 mz = 7 nxpe = 1, nype = 1, npes = 1 Reading from 0: [0-1][0-3] -> [0-1][0-3] __________ TestAccuracyAgainstOldCollect.test_multiple_files_along_x ___________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') def test_multiple_files_along_x(self, tmp_path_factory): # Create temp directory for files test_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=1, syn_data_type="linear" ) for temp_ds, file_name in zip(ds_list, file_list): temp_ds.to_netcdf(test_dir.joinpath(file_name)) var = "n" expected = old_collect(var, path=test_dir, prefix="BOUT.dmp", xguards=True) # Test against new standard - open_boutdataset with pytest.warns(UserWarning): > ds = open_boutdataset(test_dir.joinpath("BOUT.dmp.*.nc")) xbout/tests/test_against_collect.py:54: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e452bc0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- mxsub = 2 mysub = 4 mz = 7 nxpe = 3, nype = 1, npes = 3 Reading from 0: [0-1][0-3] -> [0-1][0-3] Reading from 1: [0-1][0-3] -> [2-3][0-3] Reading from 2: [0-1][0-3] -> [4-5][0-3] __________ TestAccuracyAgainstOldCollect.test_multiple_files_along_y ___________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') def test_multiple_files_along_y(self, tmp_path_factory): # Create temp directory for files test_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=1, nype=3, syn_data_type="linear" ) for temp_ds, file_name in zip(ds_list, file_list): temp_ds.to_netcdf(test_dir.joinpath(file_name)) var = "n" expected = old_collect(var, path=test_dir, prefix="BOUT.dmp", xguards=True) # Test against new standard - .open_boutdataset with pytest.warns(UserWarning): > ds = open_boutdataset(test_dir.joinpath("BOUT.dmp.*.nc")) xbout/tests/test_against_collect.py:82: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6a00d78e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- mxsub = 2 mysub = 4 mz = 7 nxpe = 1, nype = 3, npes = 3 Reading from 0: [0-1][0-3] -> [0-1][0-3] Reading from 1: [0-1][0-3] -> [0-1][4-7] Reading from 2: [0-1][0-3] -> [0-1][8-11] __________ TestAccuracyAgainstOldCollect.test_multiple_files_along_xy __________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') def test_multiple_files_along_xy(self, tmp_path_factory): # Create temp directory for files test_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for temp_ds, file_name in zip(ds_list, file_list): temp_ds.to_netcdf(test_dir.joinpath(file_name)) var = "n" expected = old_collect(var, path=test_dir, prefix="BOUT.dmp", xguards=True) # Test against new standard - .open_boutdataset with pytest.warns(UserWarning): > ds = open_boutdataset(test_dir.joinpath("BOUT.dmp.*.nc")) xbout/tests/test_against_collect.py:110: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e1f3ca0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- mxsub = 2 mysub = 4 mz = 7 nxpe = 3, nype = 3, npes = 9 Reading from 0: [0-1][0-3] -> [0-1][0-3] Reading from 1: [0-1][0-3] -> [2-3][0-3] Reading from 2: [0-1][0-3] -> [4-5][0-3] Reading from 3: [0-1][0-3] -> [0-1][4-7] Reading from 4: [0-1][0-3] -> [2-3][4-7] Reading from 5: [0-1][0-3] -> [4-5][4-7] Reading from 6: [0-1][0-3] -> [0-1][8-11] Reading from 7: [0-1][0-3] -> [2-3][8-11] Reading from 8: [0-1][0-3] -> [4-5][8-11] _________________ TestAccuracyAgainstOldCollect.test_metadata __________________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') def test_metadata(self, tmp_path_factory): # Create temp directory for files test_dir = tmp_path_factory.mktemp("test_data") # Generate some test data generated_ds = create_bout_ds(syn_data_type="linear") generated_ds.to_netcdf(test_dir.joinpath("BOUT.dmp.0.nc")) with pytest.warns(UserWarning): > ds = open_boutdataset(test_dir.joinpath("BOUT.dmp.*.nc")) xbout/tests/test_against_collect.py:131: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e1be440> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ___________________ TestBoutDataArrayMethods.test_to_dataset ___________________ self = bout_xyt_example_files = def test_to_dataset(self, bout_xyt_example_files): dataset_list = bout_xyt_example_files(None, nxpe=3, nype=4, nt=1) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:20: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69fbe6080> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _________ TestBoutDataArrayMethods.test_remove_yboundaries[False-0-0] __________ self = bout_xyt_example_files = mxg = 0, myg = 0, remove_extra_upper = False @pytest.mark.parametrize("mxg", [0, pytest.param(2, marks=pytest.mark.long)]) @pytest.mark.parametrize("myg", [pytest.param(0, marks=pytest.mark.long), 2]) @pytest.mark.parametrize( "remove_extra_upper", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_remove_yboundaries( self, bout_xyt_example_files, mxg, myg, remove_extra_upper ): dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=1, nype=6, nt=1, grid="grid", guards={"x": mxg, "y": myg}, topology="connected-double-null", syn_data_type="linear", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_yboundaries=True, ) xbout/tests/test_boutdataarray.py:50: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69fb97400> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _________ TestBoutDataArrayMethods.test_remove_yboundaries[False-0-2] __________ self = bout_xyt_example_files = mxg = 2, myg = 0, remove_extra_upper = False @pytest.mark.parametrize("mxg", [0, pytest.param(2, marks=pytest.mark.long)]) @pytest.mark.parametrize("myg", [pytest.param(0, marks=pytest.mark.long), 2]) @pytest.mark.parametrize( "remove_extra_upper", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_remove_yboundaries( self, bout_xyt_example_files, mxg, myg, remove_extra_upper ): dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=1, nype=6, nt=1, grid="grid", guards={"x": mxg, "y": myg}, topology="connected-double-null", syn_data_type="linear", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_yboundaries=True, ) xbout/tests/test_boutdataarray.py:50: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69ee5b580> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _________ TestBoutDataArrayMethods.test_remove_yboundaries[False-2-0] __________ self = bout_xyt_example_files = mxg = 0, myg = 2, remove_extra_upper = False @pytest.mark.parametrize("mxg", [0, pytest.param(2, marks=pytest.mark.long)]) @pytest.mark.parametrize("myg", [pytest.param(0, marks=pytest.mark.long), 2]) @pytest.mark.parametrize( "remove_extra_upper", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_remove_yboundaries( self, bout_xyt_example_files, mxg, myg, remove_extra_upper ): dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=1, nype=6, nt=1, grid="grid", guards={"x": mxg, "y": myg}, topology="connected-double-null", syn_data_type="linear", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_yboundaries=True, ) xbout/tests/test_boutdataarray.py:50: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69ef6b580> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _________ TestBoutDataArrayMethods.test_remove_yboundaries[False-2-2] __________ self = bout_xyt_example_files = mxg = 2, myg = 2, remove_extra_upper = False @pytest.mark.parametrize("mxg", [0, pytest.param(2, marks=pytest.mark.long)]) @pytest.mark.parametrize("myg", [pytest.param(0, marks=pytest.mark.long), 2]) @pytest.mark.parametrize( "remove_extra_upper", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_remove_yboundaries( self, bout_xyt_example_files, mxg, myg, remove_extra_upper ): dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=1, nype=6, nt=1, grid="grid", guards={"x": mxg, "y": myg}, topology="connected-double-null", syn_data_type="linear", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_yboundaries=True, ) xbout/tests/test_boutdataarray.py:50: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69ef07580> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions __________ TestBoutDataArrayMethods.test_remove_yboundaries[True-0-0] __________ self = bout_xyt_example_files = mxg = 0, myg = 0, remove_extra_upper = True @pytest.mark.parametrize("mxg", [0, pytest.param(2, marks=pytest.mark.long)]) @pytest.mark.parametrize("myg", [pytest.param(0, marks=pytest.mark.long), 2]) @pytest.mark.parametrize( "remove_extra_upper", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_remove_yboundaries( self, bout_xyt_example_files, mxg, myg, remove_extra_upper ): dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=1, nype=6, nt=1, grid="grid", guards={"x": mxg, "y": myg}, topology="connected-double-null", syn_data_type="linear", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_yboundaries=True, ) xbout/tests/test_boutdataarray.py:50: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69ebbf4c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions __________ TestBoutDataArrayMethods.test_remove_yboundaries[True-0-2] __________ self = bout_xyt_example_files = mxg = 2, myg = 0, remove_extra_upper = True @pytest.mark.parametrize("mxg", [0, pytest.param(2, marks=pytest.mark.long)]) @pytest.mark.parametrize("myg", [pytest.param(0, marks=pytest.mark.long), 2]) @pytest.mark.parametrize( "remove_extra_upper", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_remove_yboundaries( self, bout_xyt_example_files, mxg, myg, remove_extra_upper ): dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=1, nype=6, nt=1, grid="grid", guards={"x": mxg, "y": myg}, topology="connected-double-null", syn_data_type="linear", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_yboundaries=True, ) xbout/tests/test_boutdataarray.py:50: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69eaac760> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions __________ TestBoutDataArrayMethods.test_remove_yboundaries[True-2-0] __________ self = bout_xyt_example_files = mxg = 0, myg = 2, remove_extra_upper = True @pytest.mark.parametrize("mxg", [0, pytest.param(2, marks=pytest.mark.long)]) @pytest.mark.parametrize("myg", [pytest.param(0, marks=pytest.mark.long), 2]) @pytest.mark.parametrize( "remove_extra_upper", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_remove_yboundaries( self, bout_xyt_example_files, mxg, myg, remove_extra_upper ): dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=1, nype=6, nt=1, grid="grid", guards={"x": mxg, "y": myg}, topology="connected-double-null", syn_data_type="linear", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_yboundaries=True, ) xbout/tests/test_boutdataarray.py:50: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e693940> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions __________ TestBoutDataArrayMethods.test_remove_yboundaries[True-2-2] __________ self = bout_xyt_example_files = mxg = 2, myg = 2, remove_extra_upper = True @pytest.mark.parametrize("mxg", [0, pytest.param(2, marks=pytest.mark.long)]) @pytest.mark.parametrize("myg", [pytest.param(0, marks=pytest.mark.long), 2]) @pytest.mark.parametrize( "remove_extra_upper", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_remove_yboundaries( self, bout_xyt_example_files, mxg, myg, remove_extra_upper ): dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=1, nype=6, nt=1, grid="grid", guards={"x": mxg, "y": myg}, topology="connected-double-null", syn_data_type="linear", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_yboundaries=True, ) xbout/tests/test_boutdataarray.py:50: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e70bb80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ___________ TestBoutDataArrayMethods.test_to_field_aligned[False-6] ____________ self = bout_xyt_example_files = nz = 6, permute_dims = False @pytest.mark.parametrize( "nz", [ pytest.param(6, marks=pytest.mark.long), 7, pytest.param(8, marks=pytest.mark.long), pytest.param(9, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_to_field_aligned(self, bout_xyt_example_files, nz, permute_dims): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, nz), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:107: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69fc91fc0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ___________ TestBoutDataArrayMethods.test_to_field_aligned[False-7] ____________ self = bout_xyt_example_files = nz = 7, permute_dims = False @pytest.mark.parametrize( "nz", [ pytest.param(6, marks=pytest.mark.long), 7, pytest.param(8, marks=pytest.mark.long), pytest.param(9, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_to_field_aligned(self, bout_xyt_example_files, nz, permute_dims): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, nz), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:107: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6a0160040> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ___________ TestBoutDataArrayMethods.test_to_field_aligned[False-8] ____________ self = bout_xyt_example_files = nz = 8, permute_dims = False @pytest.mark.parametrize( "nz", [ pytest.param(6, marks=pytest.mark.long), 7, pytest.param(8, marks=pytest.mark.long), pytest.param(9, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_to_field_aligned(self, bout_xyt_example_files, nz, permute_dims): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, nz), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:107: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e098b80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ___________ TestBoutDataArrayMethods.test_to_field_aligned[False-9] ____________ self = bout_xyt_example_files = nz = 9, permute_dims = False @pytest.mark.parametrize( "nz", [ pytest.param(6, marks=pytest.mark.long), 7, pytest.param(8, marks=pytest.mark.long), pytest.param(9, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_to_field_aligned(self, bout_xyt_example_files, nz, permute_dims): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, nz), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:107: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e1f2500> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ____________ TestBoutDataArrayMethods.test_to_field_aligned[True-6] ____________ self = bout_xyt_example_files = nz = 6, permute_dims = True @pytest.mark.parametrize( "nz", [ pytest.param(6, marks=pytest.mark.long), 7, pytest.param(8, marks=pytest.mark.long), pytest.param(9, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_to_field_aligned(self, bout_xyt_example_files, nz, permute_dims): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, nz), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:107: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69eac8be0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ____________ TestBoutDataArrayMethods.test_to_field_aligned[True-7] ____________ self = bout_xyt_example_files = nz = 7, permute_dims = True @pytest.mark.parametrize( "nz", [ pytest.param(6, marks=pytest.mark.long), 7, pytest.param(8, marks=pytest.mark.long), pytest.param(9, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_to_field_aligned(self, bout_xyt_example_files, nz, permute_dims): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, nz), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:107: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69eebb9a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ____________ TestBoutDataArrayMethods.test_to_field_aligned[True-8] ____________ self = bout_xyt_example_files = nz = 8, permute_dims = True @pytest.mark.parametrize( "nz", [ pytest.param(6, marks=pytest.mark.long), 7, pytest.param(8, marks=pytest.mark.long), pytest.param(9, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_to_field_aligned(self, bout_xyt_example_files, nz, permute_dims): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, nz), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:107: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69ee8ed40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ____________ TestBoutDataArrayMethods.test_to_field_aligned[True-9] ____________ self = bout_xyt_example_files = nz = 9, permute_dims = True @pytest.mark.parametrize( "nz", [ pytest.param(6, marks=pytest.mark.long), 7, pytest.param(8, marks=pytest.mark.long), pytest.param(9, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_to_field_aligned(self, bout_xyt_example_files, nz, permute_dims): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, nz), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:107: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69ee99180> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError __________ TestBoutDataArrayMethods.test_to_field_aligned_dask[False] __________ self = bout_xyt_example_files = permute_dims = False @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_to_field_aligned_dask(self, bout_xyt_example_files, permute_dims): nz = 6 dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, nz), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:216: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69eec5240> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError __________ TestBoutDataArrayMethods.test_to_field_aligned_dask[True] ___________ self = bout_xyt_example_files = permute_dims = True @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_to_field_aligned_dask(self, bout_xyt_example_files, permute_dims): nz = 6 dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, nz), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:216: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69ef4b5e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError __________ TestBoutDataArrayMethods.test_from_field_aligned[False-6] ___________ self = bout_xyt_example_files = nz = 6, permute_dims = False @pytest.mark.parametrize( "nz", [ pytest.param(6, marks=pytest.mark.long), 7, pytest.param(8, marks=pytest.mark.long), pytest.param(9, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_from_field_aligned(self, bout_xyt_example_files, nz, permute_dims): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, nz), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:337: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69ef6cb80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError __________ TestBoutDataArrayMethods.test_from_field_aligned[False-7] ___________ self = bout_xyt_example_files = nz = 7, permute_dims = False @pytest.mark.parametrize( "nz", [ pytest.param(6, marks=pytest.mark.long), 7, pytest.param(8, marks=pytest.mark.long), pytest.param(9, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_from_field_aligned(self, bout_xyt_example_files, nz, permute_dims): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, nz), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:337: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69ef35900> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError __________ TestBoutDataArrayMethods.test_from_field_aligned[False-8] ___________ self = bout_xyt_example_files = nz = 8, permute_dims = False @pytest.mark.parametrize( "nz", [ pytest.param(6, marks=pytest.mark.long), 7, pytest.param(8, marks=pytest.mark.long), pytest.param(9, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_from_field_aligned(self, bout_xyt_example_files, nz, permute_dims): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, nz), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:337: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69ee89600> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError __________ TestBoutDataArrayMethods.test_from_field_aligned[False-9] ___________ self = bout_xyt_example_files = nz = 9, permute_dims = False @pytest.mark.parametrize( "nz", [ pytest.param(6, marks=pytest.mark.long), 7, pytest.param(8, marks=pytest.mark.long), pytest.param(9, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_from_field_aligned(self, bout_xyt_example_files, nz, permute_dims): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, nz), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:337: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69ee9c340> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ___________ TestBoutDataArrayMethods.test_from_field_aligned[True-6] ___________ self = bout_xyt_example_files = nz = 6, permute_dims = True @pytest.mark.parametrize( "nz", [ pytest.param(6, marks=pytest.mark.long), 7, pytest.param(8, marks=pytest.mark.long), pytest.param(9, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_from_field_aligned(self, bout_xyt_example_files, nz, permute_dims): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, nz), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:337: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69ee70a00> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ___________ TestBoutDataArrayMethods.test_from_field_aligned[True-7] ___________ self = bout_xyt_example_files = nz = 7, permute_dims = True @pytest.mark.parametrize( "nz", [ pytest.param(6, marks=pytest.mark.long), 7, pytest.param(8, marks=pytest.mark.long), pytest.param(9, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_from_field_aligned(self, bout_xyt_example_files, nz, permute_dims): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, nz), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:337: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69ee58ac0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ___________ TestBoutDataArrayMethods.test_from_field_aligned[True-8] ___________ self = bout_xyt_example_files = nz = 8, permute_dims = True @pytest.mark.parametrize( "nz", [ pytest.param(6, marks=pytest.mark.long), 7, pytest.param(8, marks=pytest.mark.long), pytest.param(9, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_from_field_aligned(self, bout_xyt_example_files, nz, permute_dims): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, nz), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:337: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e1f2b60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ___________ TestBoutDataArrayMethods.test_from_field_aligned[True-9] ___________ self = bout_xyt_example_files = nz = 9, permute_dims = True @pytest.mark.parametrize( "nz", [ pytest.param(6, marks=pytest.mark.long), 7, pytest.param(8, marks=pytest.mark.long), pytest.param(9, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_from_field_aligned(self, bout_xyt_example_files, nz, permute_dims): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, nz), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:337: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e099de0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError __ TestBoutDataArrayMethods.test_to_field_aligned_staggered[False-CELL_XLOW] ___ self = bout_xyt_example_files = stag_location = 'CELL_XLOW', permute_dims = False @pytest.mark.parametrize("stag_location", ["CELL_XLOW", "CELL_YLOW", "CELL_ZLOW"]) @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_to_field_aligned_staggered( self, bout_xyt_example_files, stag_location, permute_dims ): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, 8), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:447: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69ecc3340> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError __ TestBoutDataArrayMethods.test_to_field_aligned_staggered[False-CELL_YLOW] ___ self = bout_xyt_example_files = stag_location = 'CELL_YLOW', permute_dims = False @pytest.mark.parametrize("stag_location", ["CELL_XLOW", "CELL_YLOW", "CELL_ZLOW"]) @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_to_field_aligned_staggered( self, bout_xyt_example_files, stag_location, permute_dims ): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, 8), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:447: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e708040> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError __ TestBoutDataArrayMethods.test_to_field_aligned_staggered[False-CELL_ZLOW] ___ self = bout_xyt_example_files = stag_location = 'CELL_ZLOW', permute_dims = False @pytest.mark.parametrize("stag_location", ["CELL_XLOW", "CELL_YLOW", "CELL_ZLOW"]) @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_to_field_aligned_staggered( self, bout_xyt_example_files, stag_location, permute_dims ): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, 8), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:447: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e607dc0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ___ TestBoutDataArrayMethods.test_to_field_aligned_staggered[True-CELL_XLOW] ___ self = bout_xyt_example_files = stag_location = 'CELL_XLOW', permute_dims = True @pytest.mark.parametrize("stag_location", ["CELL_XLOW", "CELL_YLOW", "CELL_ZLOW"]) @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_to_field_aligned_staggered( self, bout_xyt_example_files, stag_location, permute_dims ): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, 8), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:447: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e1384c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ___ TestBoutDataArrayMethods.test_to_field_aligned_staggered[True-CELL_YLOW] ___ self = bout_xyt_example_files = stag_location = 'CELL_YLOW', permute_dims = True @pytest.mark.parametrize("stag_location", ["CELL_XLOW", "CELL_YLOW", "CELL_ZLOW"]) @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_to_field_aligned_staggered( self, bout_xyt_example_files, stag_location, permute_dims ): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, 8), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:447: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69eea7e20> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ___ TestBoutDataArrayMethods.test_to_field_aligned_staggered[True-CELL_ZLOW] ___ self = bout_xyt_example_files = stag_location = 'CELL_ZLOW', permute_dims = True @pytest.mark.parametrize("stag_location", ["CELL_XLOW", "CELL_YLOW", "CELL_ZLOW"]) @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_to_field_aligned_staggered( self, bout_xyt_example_files, stag_location, permute_dims ): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, 8), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:447: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e6180a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _ TestBoutDataArrayMethods.test_from_field_aligned_staggered[False-CELL_XLOW] __ self = bout_xyt_example_files = stag_location = 'CELL_XLOW', permute_dims = False @pytest.mark.parametrize("stag_location", ["CELL_XLOW", "CELL_YLOW", "CELL_ZLOW"]) @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_from_field_aligned_staggered( self, bout_xyt_example_files, stag_location, permute_dims ): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, 8), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:510: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69ff2d240> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _ TestBoutDataArrayMethods.test_from_field_aligned_staggered[False-CELL_YLOW] __ self = bout_xyt_example_files = stag_location = 'CELL_YLOW', permute_dims = False @pytest.mark.parametrize("stag_location", ["CELL_XLOW", "CELL_YLOW", "CELL_ZLOW"]) @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_from_field_aligned_staggered( self, bout_xyt_example_files, stag_location, permute_dims ): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, 8), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:510: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e4510c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _ TestBoutDataArrayMethods.test_from_field_aligned_staggered[False-CELL_ZLOW] __ self = bout_xyt_example_files = stag_location = 'CELL_ZLOW', permute_dims = False @pytest.mark.parametrize("stag_location", ["CELL_XLOW", "CELL_YLOW", "CELL_ZLOW"]) @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_from_field_aligned_staggered( self, bout_xyt_example_files, stag_location, permute_dims ): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, 8), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:510: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69ea0a500> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError __ TestBoutDataArrayMethods.test_from_field_aligned_staggered[True-CELL_XLOW] __ self = bout_xyt_example_files = stag_location = 'CELL_XLOW', permute_dims = True @pytest.mark.parametrize("stag_location", ["CELL_XLOW", "CELL_YLOW", "CELL_ZLOW"]) @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_from_field_aligned_staggered( self, bout_xyt_example_files, stag_location, permute_dims ): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, 8), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:510: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69ee9cc40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError __ TestBoutDataArrayMethods.test_from_field_aligned_staggered[True-CELL_YLOW] __ self = bout_xyt_example_files = stag_location = 'CELL_YLOW', permute_dims = True @pytest.mark.parametrize("stag_location", ["CELL_XLOW", "CELL_YLOW", "CELL_ZLOW"]) @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_from_field_aligned_staggered( self, bout_xyt_example_files, stag_location, permute_dims ): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, 8), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:510: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69ee89c60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError __ TestBoutDataArrayMethods.test_from_field_aligned_staggered[True-CELL_ZLOW] __ self = bout_xyt_example_files = stag_location = 'CELL_ZLOW', permute_dims = True @pytest.mark.parametrize("stag_location", ["CELL_XLOW", "CELL_YLOW", "CELL_ZLOW"]) @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_from_field_aligned_staggered( self, bout_xyt_example_files, stag_location, permute_dims ): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, 8), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:510: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69ef365c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ________ TestBoutDataArrayMethods.test_interpolate_parallel_region_core ________ self = bout_xyt_example_files = @pytest.mark.long def test_interpolate_parallel_region_core(self, bout_xyt_example_files): dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 16, 3), nxpe=1, nype=1, nt=1, grid="grid", guards={"y": 2}, topology="core", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_yboundaries=True, ) xbout/tests/test_boutdataarray.py:577: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69ef4a440> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions __ TestBoutDataArrayMethods.test_interpolate_parallel_region_core_change_n[2] __ self = bout_xyt_example_files = res_factor = 2 @pytest.mark.parametrize( "res_factor", [ pytest.param(2, marks=pytest.mark.long), 3, pytest.param(7, marks=pytest.mark.long), pytest.param(18, marks=pytest.mark.long), ], ) def test_interpolate_parallel_region_core_change_n( self, bout_xyt_example_files, res_factor ): dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 16, 3), nxpe=1, nype=1, nt=1, grid="grid", guards={"y": 2}, topology="core", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_yboundaries=True, ) xbout/tests/test_boutdataarray.py:635: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69ee9aa40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions __ TestBoutDataArrayMethods.test_interpolate_parallel_region_core_change_n[3] __ self = bout_xyt_example_files = res_factor = 3 @pytest.mark.parametrize( "res_factor", [ pytest.param(2, marks=pytest.mark.long), 3, pytest.param(7, marks=pytest.mark.long), pytest.param(18, marks=pytest.mark.long), ], ) def test_interpolate_parallel_region_core_change_n( self, bout_xyt_example_files, res_factor ): dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 16, 3), nxpe=1, nype=1, nt=1, grid="grid", guards={"y": 2}, topology="core", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_yboundaries=True, ) xbout/tests/test_boutdataarray.py:635: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69eea5660> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions __ TestBoutDataArrayMethods.test_interpolate_parallel_region_core_change_n[7] __ self = bout_xyt_example_files = res_factor = 7 @pytest.mark.parametrize( "res_factor", [ pytest.param(2, marks=pytest.mark.long), 3, pytest.param(7, marks=pytest.mark.long), pytest.param(18, marks=pytest.mark.long), ], ) def test_interpolate_parallel_region_core_change_n( self, bout_xyt_example_files, res_factor ): dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 16, 3), nxpe=1, nype=1, nt=1, grid="grid", guards={"y": 2}, topology="core", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_yboundaries=True, ) xbout/tests/test_boutdataarray.py:635: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69fe9f100> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDataArrayMethods.test_interpolate_parallel_region_core_change_n[18] __ self = bout_xyt_example_files = res_factor = 18 @pytest.mark.parametrize( "res_factor", [ pytest.param(2, marks=pytest.mark.long), 3, pytest.param(7, marks=pytest.mark.long), pytest.param(18, marks=pytest.mark.long), ], ) def test_interpolate_parallel_region_core_change_n( self, bout_xyt_example_files, res_factor ): dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 16, 3), nxpe=1, nype=1, nt=1, grid="grid", guards={"y": 2}, topology="core", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_yboundaries=True, ) xbout/tests/test_boutdataarray.py:635: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69edb6e00> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________ TestBoutDataArrayMethods.test_interpolate_parallel_region_sol _________ self = bout_xyt_example_files = @pytest.mark.long def test_interpolate_parallel_region_sol(self, bout_xyt_example_files): dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 16, 3), nxpe=1, nype=1, nt=1, grid="grid", guards={"y": 2}, topology="sol", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_yboundaries=True, ) xbout/tests/test_boutdataarray.py:687: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69ff64ca0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____ TestBoutDataArrayMethods.test_interpolate_parallel_region_singlenull _____ self = bout_xyt_example_files = def test_interpolate_parallel_region_singlenull(self, bout_xyt_example_files): dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 16, 3), nxpe=1, nype=3, nt=1, grid="grid", guards={"y": 2}, topology="single-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_yboundaries=True, ) xbout/tests/test_boutdataarray.py:734: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e4e69e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestBoutDataArrayMethods.test_interpolate_parallel ______________ self = bout_xyt_example_files = def test_interpolate_parallel(self, bout_xyt_example_files): dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 16, 3), nxpe=1, nype=3, nt=1, grid="grid", guards={"y": 2}, topology="single-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_yboundaries=True, ) xbout/tests/test_boutdataarray.py:806: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e2dad40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ____________ TestBoutDataArrayMethods.test_interpolate_parallel_sol ____________ self = bout_xyt_example_files = def test_interpolate_parallel_sol(self, bout_xyt_example_files): dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 16, 3), nxpe=1, nype=1, nt=1, grid="grid", guards={"y": 2}, topology="sol", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_yboundaries=True, ) xbout/tests/test_boutdataarray.py:860: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69fc97be0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______ TestBoutDataArrayMethods.test_interpolate_parallel_toroidal_points ______ self = bout_xyt_example_files = def test_interpolate_parallel_toroidal_points(self, bout_xyt_example_files): dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 16, 3), nxpe=1, nype=3, nt=1, grid="grid", guards={"y": 2}, topology="single-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_yboundaries=True, ) xbout/tests/test_boutdataarray.py:912: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69ebbf940> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ___ TestBoutDataArrayMethods.test_interpolate_parallel_toroidal_points_list ____ self = bout_xyt_example_files = def test_interpolate_parallel_toroidal_points_list(self, bout_xyt_example_files): dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 16, 3), nxpe=1, nype=3, nt=1, grid="grid", guards={"y": 2}, topology="single-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_yboundaries=True, ) xbout/tests/test_boutdataarray.py:937: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e708dc0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ____________ TestBoutDataArrayMethods.test_interpolate_to_cartesian ____________ self = bout_xyt_example_files = def test_interpolate_to_cartesian(self, bout_xyt_example_files): dataset_list = bout_xyt_example_files( None, lengths=(2, 16, 17, 18), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:959: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69ee72c20> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ___________ TestBoutDataArrayMethods.test_add_cartesian_coordinates ____________ self = bout_xyt_example_files = def test_add_cartesian_coordinates(self, bout_xyt_example_files): dataset_list = bout_xyt_example_files(None, nxpe=1, nype=1, nt=1) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:999: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e20a9e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ______________________ TestBoutDataArrayMethods.test_ddx _______________________ self = bout_xyt_example_files = def test_ddx(self, bout_xyt_example_files): nx = 64 dataset_list = bout_xyt_example_files( None, lengths=(2, nx, 4, 3), nxpe=1, nype=1, ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, ) xbout/tests/test_boutdataarray.py:1044: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6a01142e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ______________________ TestBoutDataArrayMethods.test_ddy _______________________ self = bout_xyt_example_files = def test_ddy(self, bout_xyt_example_files): ny = 64 dataset_list, gridfilepath = bout_xyt_example_files( None, lengths=(2, 3, ny, 4), nxpe=1, nype=1, grid="grid", ) > ds = open_boutdataset( datapath=dataset_list, geometry="toroidal", gridfilepath=gridfilepath ) xbout/tests/test_boutdataarray.py:1078: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e6e0340> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________________ TestBoutDataArrayMethods.test_ddz _______________________ self = bout_xyt_example_files = def test_ddz(self, bout_xyt_example_files): dataset_list = bout_xyt_example_files( None, lengths=(2, 3, 4, 64), nxpe=1, nype=1, ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, ) xbout/tests/test_boutdataarray.py:1109: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69ecbefe0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _____________ TestBoutDataArrayMethods.test_derivatives_doublenull _____________ self = bout_xyt_example_files = def test_derivatives_doublenull(self, bout_xyt_example_files): # Check function does not error on double-null topology dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=1, nype=6, nt=1, grid="grid", guards={"x": 2, "y": 2}, topology="connected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_yboundaries=True, ) xbout/tests/test_boutdataarray.py:1141: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e4f3400> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions __________________ TestBoutDatasetIsXarrayDataset.test_concat __________________ self = bout_xyt_example_files = def test_concat(self, bout_xyt_example_files): dataset_list1 = bout_xyt_example_files(None, nxpe=3, nype=4, nt=1) with pytest.warns(UserWarning): > bd1 = open_boutdataset( datapath=dataset_list1, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataset.py:36: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69fc72200> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ___________________ TestBoutDatasetIsXarrayDataset.test_isel ___________________ self = bout_xyt_example_files = def test_isel(self, bout_xyt_example_files): dataset_list = bout_xyt_example_files(None, nxpe=1, nype=1, nt=1) with pytest.warns(UserWarning): > bd = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataset.py:50: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69ea56140> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ________________ TestBoutDatasetMethods.test_get_field_aligned _________________ self = bout_xyt_example_files = def test_get_field_aligned(self, bout_xyt_example_files): dataset_list = bout_xyt_example_files(None, nxpe=3, nype=4, nt=1) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataset.py:62: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69eebac80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _____________ TestBoutDatasetMethods.test_remove_yboundaries[0-0] ______________ self = bout_xyt_example_files = mxg = 0, myg = 0 @pytest.mark.parametrize("mxg", [0, pytest.param(2, marks=pytest.mark.long)]) @pytest.mark.parametrize("myg", [pytest.param(0, marks=pytest.mark.long), 2]) def test_remove_yboundaries(self, bout_xyt_example_files, mxg, myg): dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=1, nype=6, nt=1, grid="grid", guards={"x": mxg, "y": myg}, topology="connected-double-null", syn_data_type="linear", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_yboundaries=True, ) xbout/tests/test_boutdataset.py:103: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69eec4a60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestBoutDatasetMethods.test_remove_yboundaries[0-2] ______________ self = bout_xyt_example_files = mxg = 2, myg = 0 @pytest.mark.parametrize("mxg", [0, pytest.param(2, marks=pytest.mark.long)]) @pytest.mark.parametrize("myg", [pytest.param(0, marks=pytest.mark.long), 2]) def test_remove_yboundaries(self, bout_xyt_example_files, mxg, myg): dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=1, nype=6, nt=1, grid="grid", guards={"x": mxg, "y": myg}, topology="connected-double-null", syn_data_type="linear", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_yboundaries=True, ) xbout/tests/test_boutdataset.py:103: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69fc3a440> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestBoutDatasetMethods.test_remove_yboundaries[2-0] ______________ self = bout_xyt_example_files = mxg = 0, myg = 2 @pytest.mark.parametrize("mxg", [0, pytest.param(2, marks=pytest.mark.long)]) @pytest.mark.parametrize("myg", [pytest.param(0, marks=pytest.mark.long), 2]) def test_remove_yboundaries(self, bout_xyt_example_files, mxg, myg): dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=1, nype=6, nt=1, grid="grid", guards={"x": mxg, "y": myg}, topology="connected-double-null", syn_data_type="linear", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_yboundaries=True, ) xbout/tests/test_boutdataset.py:103: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e6a6560> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestBoutDatasetMethods.test_remove_yboundaries[2-2] ______________ self = bout_xyt_example_files = mxg = 2, myg = 2 @pytest.mark.parametrize("mxg", [0, pytest.param(2, marks=pytest.mark.long)]) @pytest.mark.parametrize("myg", [pytest.param(0, marks=pytest.mark.long), 2]) def test_remove_yboundaries(self, bout_xyt_example_files, mxg, myg): dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=1, nype=6, nt=1, grid="grid", guards={"x": mxg, "y": myg}, topology="connected-double-null", syn_data_type="linear", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_yboundaries=True, ) xbout/tests/test_boutdataset.py:103: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69ff63580> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _______________ TestBoutDatasetMethods.test_to_field_aligned[6] ________________ self = bout_xyt_example_files = nz = 6 @pytest.mark.parametrize( "nz", [ pytest.param(6, marks=pytest.mark.long), 7, pytest.param(8, marks=pytest.mark.long), pytest.param(9, marks=pytest.mark.long), ], ) def test_to_field_aligned(self, bout_xyt_example_files, nz): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, nz), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataset.py:163: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69ff6a560> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _______________ TestBoutDatasetMethods.test_to_field_aligned[7] ________________ self = bout_xyt_example_files = nz = 7 @pytest.mark.parametrize( "nz", [ pytest.param(6, marks=pytest.mark.long), 7, pytest.param(8, marks=pytest.mark.long), pytest.param(9, marks=pytest.mark.long), ], ) def test_to_field_aligned(self, bout_xyt_example_files, nz): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, nz), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataset.py:163: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69feded40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _______________ TestBoutDatasetMethods.test_to_field_aligned[8] ________________ self = bout_xyt_example_files = nz = 8 @pytest.mark.parametrize( "nz", [ pytest.param(6, marks=pytest.mark.long), 7, pytest.param(8, marks=pytest.mark.long), pytest.param(9, marks=pytest.mark.long), ], ) def test_to_field_aligned(self, bout_xyt_example_files, nz): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, nz), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataset.py:163: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69fecb4c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _______________ TestBoutDatasetMethods.test_to_field_aligned[9] ________________ self = bout_xyt_example_files = nz = 9 @pytest.mark.parametrize( "nz", [ pytest.param(6, marks=pytest.mark.long), 7, pytest.param(8, marks=pytest.mark.long), pytest.param(9, marks=pytest.mark.long), ], ) def test_to_field_aligned(self, bout_xyt_example_files, nz): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, nz), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataset.py:163: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e19af80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ______________ TestBoutDatasetMethods.test_to_field_aligned_dask _______________ self = bout_xyt_example_files = def test_to_field_aligned_dask(self, bout_xyt_example_files): nz = 6 dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, nz), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataset.py:269: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69fbe5b40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ______________ TestBoutDatasetMethods.test_from_field_aligned[6] _______________ self = bout_xyt_example_files = nz = 6 @pytest.mark.parametrize( "nz", [ pytest.param(6, marks=pytest.mark.long), 7, pytest.param(8, marks=pytest.mark.long), pytest.param(9, marks=pytest.mark.long), ], ) def test_from_field_aligned(self, bout_xyt_example_files, nz): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, nz), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataset.py:389: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e124d00> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ______________ TestBoutDatasetMethods.test_from_field_aligned[7] _______________ self = bout_xyt_example_files = nz = 7 @pytest.mark.parametrize( "nz", [ pytest.param(6, marks=pytest.mark.long), 7, pytest.param(8, marks=pytest.mark.long), pytest.param(9, marks=pytest.mark.long), ], ) def test_from_field_aligned(self, bout_xyt_example_files, nz): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, nz), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataset.py:389: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e691180> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ______________ TestBoutDatasetMethods.test_from_field_aligned[8] _______________ self = bout_xyt_example_files = nz = 8 @pytest.mark.parametrize( "nz", [ pytest.param(6, marks=pytest.mark.long), 7, pytest.param(8, marks=pytest.mark.long), pytest.param(9, marks=pytest.mark.long), ], ) def test_from_field_aligned(self, bout_xyt_example_files, nz): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, nz), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataset.py:389: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e28fa00> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ______________ TestBoutDatasetMethods.test_from_field_aligned[9] _______________ self = bout_xyt_example_files = nz = 9 @pytest.mark.parametrize( "nz", [ pytest.param(6, marks=pytest.mark.long), 7, pytest.param(8, marks=pytest.mark.long), pytest.param(9, marks=pytest.mark.long), ], ) def test_from_field_aligned(self, bout_xyt_example_files, nz): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, nz), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataset.py:389: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e56c160> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ______ TestBoutDatasetMethods.test_to_field_aligned_staggered[CELL_XLOW] _______ self = bout_xyt_example_files = stag_location = 'CELL_XLOW' @pytest.mark.parametrize("stag_location", ["CELL_XLOW", "CELL_YLOW", "CELL_ZLOW"]) def test_to_field_aligned_staggered(self, bout_xyt_example_files, stag_location): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, 8), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataset.py:494: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69feeed40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ______ TestBoutDatasetMethods.test_to_field_aligned_staggered[CELL_YLOW] _______ self = bout_xyt_example_files = stag_location = 'CELL_YLOW' @pytest.mark.parametrize("stag_location", ["CELL_XLOW", "CELL_YLOW", "CELL_ZLOW"]) def test_to_field_aligned_staggered(self, bout_xyt_example_files, stag_location): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, 8), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataset.py:494: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69fc9b7c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ______ TestBoutDatasetMethods.test_to_field_aligned_staggered[CELL_ZLOW] _______ self = bout_xyt_example_files = stag_location = 'CELL_ZLOW' @pytest.mark.parametrize("stag_location", ["CELL_XLOW", "CELL_YLOW", "CELL_ZLOW"]) def test_to_field_aligned_staggered(self, bout_xyt_example_files, stag_location): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, 8), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataset.py:494: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6a0153400> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _____ TestBoutDatasetMethods.test_from_field_aligned_staggered[CELL_XLOW] ______ self = bout_xyt_example_files = stag_location = 'CELL_XLOW' @pytest.mark.parametrize("stag_location", ["CELL_XLOW", "CELL_YLOW", "CELL_ZLOW"]) def test_from_field_aligned_staggered(self, bout_xyt_example_files, stag_location): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, 8), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataset.py:553: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e6e20e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _____ TestBoutDatasetMethods.test_from_field_aligned_staggered[CELL_YLOW] ______ self = bout_xyt_example_files = stag_location = 'CELL_YLOW' @pytest.mark.parametrize("stag_location", ["CELL_XLOW", "CELL_YLOW", "CELL_ZLOW"]) def test_from_field_aligned_staggered(self, bout_xyt_example_files, stag_location): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, 8), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataset.py:553: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e20ae00> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _____ TestBoutDatasetMethods.test_from_field_aligned_staggered[CELL_ZLOW] ______ self = bout_xyt_example_files = stag_location = 'CELL_ZLOW' @pytest.mark.parametrize("stag_location", ["CELL_XLOW", "CELL_YLOW", "CELL_ZLOW"]) def test_from_field_aligned_staggered(self, bout_xyt_example_files, stag_location): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, 8), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataset.py:553: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e19a620> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate0-False-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False vars_to_interpolate = ('n', 'T') @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e887580> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate0-False-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False vars_to_interpolate = ('n', 'T') @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e1dd9c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate0-False-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False vars_to_interpolate = ('n', 'T') @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e5741c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate0-False-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False vars_to_interpolate = ('n', 'T') @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69ea42b00> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate0-True-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False vars_to_interpolate = ('n', 'T') @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69edf03a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate0-True-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False vars_to_interpolate = ('n', 'T') @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69eae5720> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate0-True-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False vars_to_interpolate = ('n', 'T') @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e628ca0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate0-True-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False vars_to_interpolate = ('n', 'T') @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e5f4100> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate0-False-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True vars_to_interpolate = ('n', 'T') @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69ec4ab60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate0-False-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True vars_to_interpolate = ('n', 'T') @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69eb904c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate0-False-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True vars_to_interpolate = ('n', 'T') @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69f023b20> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate0-False-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True vars_to_interpolate = ('n', 'T') @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69f0620e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate0-True-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True vars_to_interpolate = ('n', 'T') @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69deaefe0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate0-True-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True vars_to_interpolate = ('n', 'T') @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69df48ee0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate0-True-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True vars_to_interpolate = ('n', 'T') @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69df58ca0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate0-True-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True vars_to_interpolate = ('n', 'T') @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69ea13040> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate1-False-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False vars_to_interpolate = Ellipsis @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e12ed40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate1-False-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False vars_to_interpolate = Ellipsis @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e171780> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate1-False-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False vars_to_interpolate = Ellipsis @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69ece6d40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate1-False-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False vars_to_interpolate = Ellipsis @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e88c040> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate1-True-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False vars_to_interpolate = Ellipsis @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e9ea020> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate1-True-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False vars_to_interpolate = Ellipsis @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69faf4ca0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate1-True-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False vars_to_interpolate = Ellipsis @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69eb93880> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate1-True-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False vars_to_interpolate = Ellipsis @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69eff2800> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate1-False-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True vars_to_interpolate = Ellipsis @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e28c160> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate1-False-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True vars_to_interpolate = Ellipsis @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e609de0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate1-False-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True vars_to_interpolate = Ellipsis @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69f00eb60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate1-False-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True vars_to_interpolate = Ellipsis @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69df30520> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate1-True-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True vars_to_interpolate = Ellipsis @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69df38dc0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate1-True-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True vars_to_interpolate = Ellipsis @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69ec18ca0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate1-True-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True vars_to_interpolate = Ellipsis @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69ec20400> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate1-True-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True vars_to_interpolate = Ellipsis @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e9c8760> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______ TestBoutDatasetMethods.test_interpolate_parallel_all_variables_arg ______ self = bout_xyt_example_files = def test_interpolate_parallel_all_variables_arg(self, bout_xyt_example_files): # Check that passing 'variables=...' to interpolate_parallel() does actually # interpolate all the variables dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=1, nype=1, nt=1, grid="grid", topology="sol", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal" ) xbout/tests/test_boutdataset.py:1108: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e89cca0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ___________ TestBoutDatasetMethods.test_interpolate_parallel_limiter ___________ self = bout_xyt_example_files = def test_interpolate_parallel_limiter( self, bout_xyt_example_files, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards={"x": 2, "y": 2}, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=True, keep_yboundaries=False, ) xbout/tests/test_boutdataset.py:1163: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e954040> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestBoutDatasetMethods.test_integrate_midpoints_slab _____________ self = bout_xyt_example_files = def test_integrate_midpoints_slab(self, bout_xyt_example_files): # Create data dataset_list = bout_xyt_example_files( None, lengths=(4, 100, 110, 120), nxpe=1, nype=1, nt=1, syn_data_type=1 ) > ds = open_boutdataset(dataset_list) xbout/tests/test_boutdataset.py:1193: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e9e1600> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _____ TestBoutDatasetMethods.test_integrate_midpoints_salpha[CELL_CENTRE] ______ self = bout_xyt_example_files = location = 'CELL_CENTRE' @pytest.mark.parametrize( "location", ["CELL_CENTRE", "CELL_XLOW", "CELL_YLOW", "CELL_ZLOW"] ) def test_integrate_midpoints_salpha(self, bout_xyt_example_files, location): # Create data nx = 100 ny = 110 nz = 120 dataset_list = bout_xyt_example_files( None, lengths=(4, nx, ny, nz), nxpe=1, nype=1, nt=1, syn_data_type=1, guards={"x": 2, "y": 2}, ) > ds = open_boutdataset(dataset_list) xbout/tests/test_boutdataset.py:1387: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69ea105e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ______ TestBoutDatasetMethods.test_integrate_midpoints_salpha[CELL_XLOW] _______ self = bout_xyt_example_files = location = 'CELL_XLOW' @pytest.mark.parametrize( "location", ["CELL_CENTRE", "CELL_XLOW", "CELL_YLOW", "CELL_ZLOW"] ) def test_integrate_midpoints_salpha(self, bout_xyt_example_files, location): # Create data nx = 100 ny = 110 nz = 120 dataset_list = bout_xyt_example_files( None, lengths=(4, nx, ny, nz), nxpe=1, nype=1, nt=1, syn_data_type=1, guards={"x": 2, "y": 2}, ) > ds = open_boutdataset(dataset_list) xbout/tests/test_boutdataset.py:1387: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e3bda80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ______ TestBoutDatasetMethods.test_integrate_midpoints_salpha[CELL_YLOW] _______ self = bout_xyt_example_files = location = 'CELL_YLOW' @pytest.mark.parametrize( "location", ["CELL_CENTRE", "CELL_XLOW", "CELL_YLOW", "CELL_ZLOW"] ) def test_integrate_midpoints_salpha(self, bout_xyt_example_files, location): # Create data nx = 100 ny = 110 nz = 120 dataset_list = bout_xyt_example_files( None, lengths=(4, nx, ny, nz), nxpe=1, nype=1, nt=1, syn_data_type=1, guards={"x": 2, "y": 2}, ) > ds = open_boutdataset(dataset_list) xbout/tests/test_boutdataset.py:1387: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69f02ada0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ______ TestBoutDatasetMethods.test_integrate_midpoints_salpha[CELL_ZLOW] _______ self = bout_xyt_example_files = location = 'CELL_ZLOW' @pytest.mark.parametrize( "location", ["CELL_CENTRE", "CELL_XLOW", "CELL_YLOW", "CELL_ZLOW"] ) def test_integrate_midpoints_salpha(self, bout_xyt_example_files, location): # Create data nx = 100 ny = 110 nz = 120 dataset_list = bout_xyt_example_files( None, lengths=(4, nx, ny, nz), nxpe=1, nype=1, nt=1, syn_data_type=1, guards={"x": 2, "y": 2}, ) > ds = open_boutdataset(dataset_list) xbout/tests/test_boutdataset.py:1387: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e1d6c20> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError __________ TestBoutDatasetMethods.test_interpolate_from_unstructured ___________ self = bout_xyt_example_files = def test_interpolate_from_unstructured(self, bout_xyt_example_files): dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, grid="grid", topology="upper-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal" ) xbout/tests/test_boutdataset.py:1733: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69fbe5840> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_from_unstructured_unstructured_output _ self = bout_xyt_example_files = def test_interpolate_from_unstructured_unstructured_output( self, bout_xyt_example_files ): dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal" ) xbout/tests/test_boutdataset.py:1784: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e7a5f60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestBoutDatasetMethods.test_interpolate_to_cartesian _____________ self = bout_xyt_example_files = def test_interpolate_to_cartesian(self, bout_xyt_example_files): dataset_list = bout_xyt_example_files( None, lengths=(2, 16, 17, 18), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataset.py:1842: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e7fdba0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ____________ TestBoutDatasetMethods.test_add_cartesian_coordinates _____________ self = bout_xyt_example_files = def test_add_cartesian_coordinates(self, bout_xyt_example_files): dataset_list = bout_xyt_example_files(None, nxpe=1, nype=1, nt=1) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataset.py:1883: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69ea821a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ____________________________ TestSave.test_save_all ____________________________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = def test_save_all(self, tmp_path_factory, bout_xyt_example_files): # Create data path = bout_xyt_example_files( tmp_path_factory, nxpe=4, nype=5, nt=1, write_to_disk=True ) # Load it as a boutdataset with pytest.warns(UserWarning): > original = open_boutdataset(datapath=path, inputfilepath=None) xbout/tests/test_boutdataset.py:1953: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69f0293c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ________________________ TestSave.test_reload_all[None] ________________________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = geometry = None @pytest.mark.parametrize("geometry", [None, "toroidal"]) def test_reload_all(self, tmp_path_factory, bout_xyt_example_files, geometry): # Create data path = bout_xyt_example_files( tmp_path_factory, nxpe=4, nype=5, nt=1, grid="grid", write_to_disk=True ) gridpath = path.parent.joinpath("grid.nc") # Load it as a boutdataset if geometry is None: with pytest.warns(UserWarning): > original = open_boutdataset( datapath=path, inputfilepath=None, geometry=geometry, gridfilepath=None if geometry is None else gridpath, ) xbout/tests/test_boutdataset.py:1978: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e89c3a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ______________________ TestSave.test_reload_all[toroidal] ______________________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = geometry = 'toroidal' @pytest.mark.parametrize("geometry", [None, "toroidal"]) def test_reload_all(self, tmp_path_factory, bout_xyt_example_files, geometry): # Create data path = bout_xyt_example_files( tmp_path_factory, nxpe=4, nype=5, nt=1, grid="grid", write_to_disk=True ) gridpath = path.parent.joinpath("grid.nc") # Load it as a boutdataset if geometry is None: with pytest.warns(UserWarning): original = open_boutdataset( datapath=path, inputfilepath=None, geometry=geometry, gridfilepath=None if geometry is None else gridpath, ) else: > original = open_boutdataset( datapath=path, inputfilepath=None, geometry=geometry, gridfilepath=None if geometry is None else gridpath, ) xbout/tests/test_boutdataset.py:1985: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e893100> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ___________________ TestSave.test_save_dtype[False-float64] ____________________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = save_dtype = , separate_vars = False @pytest.mark.parametrize("save_dtype", [np.float64, np.float32]) @pytest.mark.parametrize( "separate_vars", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_save_dtype( self, tmp_path_factory, bout_xyt_example_files, save_dtype, separate_vars ): # Create data path = bout_xyt_example_files( tmp_path_factory, nxpe=1, nype=1, nt=1, write_to_disk=True ) # Load it as a boutdataset with pytest.warns(UserWarning): > original = open_boutdataset(datapath=path, inputfilepath=None) xbout/tests/test_boutdataset.py:2035: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e7fe380> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ___________________ TestSave.test_save_dtype[False-float32] ____________________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = save_dtype = , separate_vars = False @pytest.mark.parametrize("save_dtype", [np.float64, np.float32]) @pytest.mark.parametrize( "separate_vars", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_save_dtype( self, tmp_path_factory, bout_xyt_example_files, save_dtype, separate_vars ): # Create data path = bout_xyt_example_files( tmp_path_factory, nxpe=1, nype=1, nt=1, write_to_disk=True ) # Load it as a boutdataset with pytest.warns(UserWarning): > original = open_boutdataset(datapath=path, inputfilepath=None) xbout/tests/test_boutdataset.py:2035: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e846f80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ____________________ TestSave.test_save_dtype[True-float64] ____________________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = save_dtype = , separate_vars = True @pytest.mark.parametrize("save_dtype", [np.float64, np.float32]) @pytest.mark.parametrize( "separate_vars", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_save_dtype( self, tmp_path_factory, bout_xyt_example_files, save_dtype, separate_vars ): # Create data path = bout_xyt_example_files( tmp_path_factory, nxpe=1, nype=1, nt=1, write_to_disk=True ) # Load it as a boutdataset with pytest.warns(UserWarning): > original = open_boutdataset(datapath=path, inputfilepath=None) xbout/tests/test_boutdataset.py:2035: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69ef09c00> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ____________________ TestSave.test_save_dtype[True-float32] ____________________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = save_dtype = , separate_vars = True @pytest.mark.parametrize("save_dtype", [np.float64, np.float32]) @pytest.mark.parametrize( "separate_vars", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_save_dtype( self, tmp_path_factory, bout_xyt_example_files, save_dtype, separate_vars ): # Create data path = bout_xyt_example_files( tmp_path_factory, nxpe=1, nype=1, nt=1, write_to_disk=True ) # Load it as a boutdataset with pytest.warns(UserWarning): > original = open_boutdataset(datapath=path, inputfilepath=None) xbout/tests/test_boutdataset.py:2035: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e643b80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ____________________ TestSave.test_save_separate_variables _____________________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = def test_save_separate_variables(self, tmp_path_factory, bout_xyt_example_files): path = bout_xyt_example_files( tmp_path_factory, nxpe=4, nype=1, nt=1, write_to_disk=True ) # Load it as a boutdataset with pytest.warns(UserWarning): > original = open_boutdataset(datapath=path, inputfilepath=None) xbout/tests/test_boutdataset.py:2063: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69eb90280> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ________________ TestSave.test_reload_separate_variables[None] _________________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = geometry = None @pytest.mark.parametrize("geometry", [None, "toroidal"]) def test_reload_separate_variables( self, tmp_path_factory, bout_xyt_example_files, geometry ): if geometry is not None: grid = "grid" else: grid = None path = bout_xyt_example_files( tmp_path_factory, nxpe=4, nype=1, nt=1, grid=grid, write_to_disk=True ) if grid is not None: gridpath = path.parent.joinpath("grid.nc") else: gridpath = None # Load it as a boutdataset if geometry is None: with pytest.warns(UserWarning): > original = open_boutdataset( datapath=path, inputfilepath=None, geometry=geometry, gridfilepath=gridpath, ) xbout/tests/test_boutdataset.py:2104: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e693ee0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ______________ TestSave.test_reload_separate_variables[toroidal] _______________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = geometry = 'toroidal' @pytest.mark.parametrize("geometry", [None, "toroidal"]) def test_reload_separate_variables( self, tmp_path_factory, bout_xyt_example_files, geometry ): if geometry is not None: grid = "grid" else: grid = None path = bout_xyt_example_files( tmp_path_factory, nxpe=4, nype=1, nt=1, grid=grid, write_to_disk=True ) if grid is not None: gridpath = path.parent.joinpath("grid.nc") else: gridpath = None # Load it as a boutdataset if geometry is None: with pytest.warns(UserWarning): original = open_boutdataset( datapath=path, inputfilepath=None, geometry=geometry, gridfilepath=gridpath, ) else: > original = open_boutdataset( datapath=path, inputfilepath=None, geometry=geometry, gridfilepath=gridpath, ) xbout/tests/test_boutdataset.py:2111: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e245d20> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ___________ TestSave.test_reload_separate_variables_time_split[None] ___________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = geometry = None @pytest.mark.parametrize("geometry", [None, "toroidal"]) def test_reload_separate_variables_time_split( self, tmp_path_factory, bout_xyt_example_files, geometry ): if geometry is not None: grid = "grid" else: grid = None path = bout_xyt_example_files( tmp_path_factory, nxpe=4, nype=1, nt=1, grid=grid, write_to_disk=True ) if grid is not None: gridpath = path.parent.joinpath("grid.nc") else: gridpath = None # Load it as a boutdataset if geometry is None: with pytest.warns(UserWarning): > original = open_boutdataset( datapath=path, inputfilepath=None, geometry=geometry, gridfilepath=gridpath, ) xbout/tests/test_boutdataset.py:2151: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e1d4ac0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _________ TestSave.test_reload_separate_variables_time_split[toroidal] _________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = geometry = 'toroidal' @pytest.mark.parametrize("geometry", [None, "toroidal"]) def test_reload_separate_variables_time_split( self, tmp_path_factory, bout_xyt_example_files, geometry ): if geometry is not None: grid = "grid" else: grid = None path = bout_xyt_example_files( tmp_path_factory, nxpe=4, nype=1, nt=1, grid=grid, write_to_disk=True ) if grid is not None: gridpath = path.parent.joinpath("grid.nc") else: gridpath = None # Load it as a boutdataset if geometry is None: with pytest.warns(UserWarning): original = open_boutdataset( datapath=path, inputfilepath=None, geometry=geometry, gridfilepath=gridpath, ) else: > original = open_boutdataset( datapath=path, inputfilepath=None, geometry=geometry, gridfilepath=gridpath, ) xbout/tests/test_boutdataset.py:2158: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e88e920> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ____________________ TestSaveRestart.test_to_restart[None] _____________________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = tind = None @pytest.mark.parametrize("tind", [None, pytest.param(1, marks=pytest.mark.long)]) def test_to_restart(self, tmp_path_factory, bout_xyt_example_files, tind): nxpe = 3 nype = 2 nt = 6 path = bout_xyt_example_files( tmp_path_factory, nxpe=nxpe, nype=nype, nt=1, lengths=[nt, 4, 4, 7], guards={"x": 2, "y": 2}, write_to_disk=True, ) # Load it as a boutdataset with pytest.warns(UserWarning): > ds = open_boutdataset(datapath=path) xbout/tests/test_boutdataset.py:2205: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e873ca0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ______________________ TestSaveRestart.test_to_restart[1] ______________________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = tind = 1 @pytest.mark.parametrize("tind", [None, pytest.param(1, marks=pytest.mark.long)]) def test_to_restart(self, tmp_path_factory, bout_xyt_example_files, tind): nxpe = 3 nype = 2 nt = 6 path = bout_xyt_example_files( tmp_path_factory, nxpe=nxpe, nype=nype, nt=1, lengths=[nt, 4, 4, 7], guards={"x": 2, "y": 2}, write_to_disk=True, ) # Load it as a boutdataset with pytest.warns(UserWarning): > ds = open_boutdataset(datapath=path) xbout/tests/test_boutdataset.py:2205: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e402f80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError __________________ TestSaveRestart.test_to_restart_change_npe __________________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = def test_to_restart_change_npe(self, tmp_path_factory, bout_xyt_example_files): nxpe_in = 3 nype_in = 2 nxpe = 2 nype = 4 nt = 6 path = bout_xyt_example_files( tmp_path_factory, nxpe=nxpe_in, nype=nype_in, nt=1, lengths=[nt, 4, 4, 7], guards={"x": 2, "y": 2}, write_to_disk=True, ) # Load it as a boutdataset with pytest.warns(UserWarning): > ds = open_boutdataset(datapath=path) xbout/tests/test_boutdataset.py:2283: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69ea2bca0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ____________ TestSaveRestart.test_to_restart_change_npe_doublenull _____________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = @pytest.mark.long def test_to_restart_change_npe_doublenull( self, tmp_path_factory, bout_xyt_example_files ): nxpe_in = 3 nype_in = 6 nxpe = 1 nype = 12 nt = 6 path = bout_xyt_example_files( tmp_path_factory, nxpe=nxpe_in, nype=nype_in, nt=1, guards={"x": 2, "y": 2}, lengths=(nt, 5, 4, 7), topology="upper-disconnected-double-null", write_to_disk=True, ) # Load it as a boutdataset with pytest.warns(UserWarning): > ds = open_boutdataset(datapath=path) xbout/tests/test_boutdataset.py:2356: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e6e38e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ___ TestSaveRestart.test_to_restart_change_npe_doublenull_expect_fail[npes0] ___ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = npes = (2, 6) @pytest.mark.long @pytest.mark.parametrize("npes", [(2, 6), (3, 4)]) def test_to_restart_change_npe_doublenull_expect_fail( self, tmp_path_factory, bout_xyt_example_files, npes ): nxpe_in = 3 nype_in = 6 nxpe, nype = npes path = bout_xyt_example_files( tmp_path_factory, nxpe=nxpe_in, nype=nype_in, nt=1, guards={"x": 2, "y": 2}, lengths=(6, 5, 4, 7), topology="lower-disconnected-double-null", write_to_disk=True, ) # Load it as a boutdataset with pytest.warns(UserWarning): > ds = open_boutdataset(datapath=path) xbout/tests/test_boutdataset.py:2427: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e2169e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ___ TestSaveRestart.test_to_restart_change_npe_doublenull_expect_fail[npes1] ___ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = npes = (3, 4) @pytest.mark.long @pytest.mark.parametrize("npes", [(2, 6), (3, 4)]) def test_to_restart_change_npe_doublenull_expect_fail( self, tmp_path_factory, bout_xyt_example_files, npes ): nxpe_in = 3 nype_in = 6 nxpe, nype = npes path = bout_xyt_example_files( tmp_path_factory, nxpe=nxpe_in, nype=nype_in, nt=1, guards={"x": 2, "y": 2}, lengths=(6, 5, 4, 7), topology="lower-disconnected-double-null", write_to_disk=True, ) # Load it as a boutdataset with pytest.warns(UserWarning): > ds = open_boutdataset(datapath=path) xbout/tests/test_boutdataset.py:2427: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69eda4520> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError __________________________ TestOpen.test_single_file ___________________________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = def test_single_file(self, tmp_path_factory, bout_xyt_example_files): path = bout_xyt_example_files( tmp_path_factory, nxpe=1, nype=1, nt=1, write_to_disk=True ) with pytest.warns(UserWarning): > actual = open_boutdataset(datapath=path, keep_xboundaries=False) xbout/tests/test_load.py:280: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69edacb80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _________________________ TestOpen.test_squashed_file __________________________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = def test_squashed_file(self, tmp_path_factory, bout_xyt_example_files): path = bout_xyt_example_files( tmp_path_factory, nxpe=4, nype=3, nt=1, squashed=True, write_to_disk=True ) with pytest.warns(UserWarning): > actual = open_boutdataset(datapath=path, keep_xboundaries=False) xbout/tests/test_load.py:306: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e8caaa0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ________________ TestOpen.test_squashed_doublenull[False-False] ________________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = keep_xboundaries = False, keep_yboundaries = False @pytest.mark.parametrize( "keep_xboundaries", [False, pytest.param(True, marks=pytest.mark.long)] ) @pytest.mark.parametrize( "keep_yboundaries", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_squashed_doublenull( self, tmp_path_factory, bout_xyt_example_files, keep_xboundaries, keep_yboundaries, ): path = bout_xyt_example_files( tmp_path_factory, nxpe=4, nype=6, nt=1, lengths=(6, 2, 4, 7), guards={"x": 2, "y": 2}, squashed=True, topology="lower-disconnected-double-null", ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=path, keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_load.py:351: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69fabee00> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ________________ TestOpen.test_squashed_doublenull[False-True] _________________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = keep_xboundaries = True, keep_yboundaries = False @pytest.mark.parametrize( "keep_xboundaries", [False, pytest.param(True, marks=pytest.mark.long)] ) @pytest.mark.parametrize( "keep_yboundaries", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_squashed_doublenull( self, tmp_path_factory, bout_xyt_example_files, keep_xboundaries, keep_yboundaries, ): path = bout_xyt_example_files( tmp_path_factory, nxpe=4, nype=6, nt=1, lengths=(6, 2, 4, 7), guards={"x": 2, "y": 2}, squashed=True, topology="lower-disconnected-double-null", ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=path, keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_load.py:351: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69f063b20> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ________________ TestOpen.test_squashed_doublenull[True-False] _________________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = keep_xboundaries = False, keep_yboundaries = True @pytest.mark.parametrize( "keep_xboundaries", [False, pytest.param(True, marks=pytest.mark.long)] ) @pytest.mark.parametrize( "keep_yboundaries", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_squashed_doublenull( self, tmp_path_factory, bout_xyt_example_files, keep_xboundaries, keep_yboundaries, ): path = bout_xyt_example_files( tmp_path_factory, nxpe=4, nype=6, nt=1, lengths=(6, 2, 4, 7), guards={"x": 2, "y": 2}, squashed=True, topology="lower-disconnected-double-null", ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=path, keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_load.py:351: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e5d1720> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _________________ TestOpen.test_squashed_doublenull[True-True] _________________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = keep_xboundaries = True, keep_yboundaries = True @pytest.mark.parametrize( "keep_xboundaries", [False, pytest.param(True, marks=pytest.mark.long)] ) @pytest.mark.parametrize( "keep_yboundaries", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_squashed_doublenull( self, tmp_path_factory, bout_xyt_example_files, keep_xboundaries, keep_yboundaries, ): path = bout_xyt_example_files( tmp_path_factory, nxpe=4, nype=6, nt=1, lengths=(6, 2, 4, 7), guards={"x": 2, "y": 2}, squashed=True, topology="lower-disconnected-double-null", ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=path, keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_load.py:351: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69ea711e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _____________ TestOpen.test_squashed_doublenull_file[False-False] ______________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = keep_xboundaries = False, keep_yboundaries = False @pytest.mark.parametrize( "keep_xboundaries", [False, pytest.param(True, marks=pytest.mark.long)] ) @pytest.mark.parametrize( "keep_yboundaries", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_squashed_doublenull_file( self, tmp_path_factory, bout_xyt_example_files, keep_xboundaries, keep_yboundaries, ): path = bout_xyt_example_files( tmp_path_factory, nxpe=4, nype=6, nt=1, lengths=(6, 4, 4, 7), guards={"x": 2, "y": 2}, squashed=True, write_to_disk=True, topology="upper-disconnected-double-null", ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=path, keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_load.py:390: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69ea6a140> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ______________ TestOpen.test_squashed_doublenull_file[False-True] ______________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = keep_xboundaries = True, keep_yboundaries = False @pytest.mark.parametrize( "keep_xboundaries", [False, pytest.param(True, marks=pytest.mark.long)] ) @pytest.mark.parametrize( "keep_yboundaries", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_squashed_doublenull_file( self, tmp_path_factory, bout_xyt_example_files, keep_xboundaries, keep_yboundaries, ): path = bout_xyt_example_files( tmp_path_factory, nxpe=4, nype=6, nt=1, lengths=(6, 4, 4, 7), guards={"x": 2, "y": 2}, squashed=True, write_to_disk=True, topology="upper-disconnected-double-null", ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=path, keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_load.py:390: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69ea2a200> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ______________ TestOpen.test_squashed_doublenull_file[True-False] ______________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = keep_xboundaries = False, keep_yboundaries = True @pytest.mark.parametrize( "keep_xboundaries", [False, pytest.param(True, marks=pytest.mark.long)] ) @pytest.mark.parametrize( "keep_yboundaries", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_squashed_doublenull_file( self, tmp_path_factory, bout_xyt_example_files, keep_xboundaries, keep_yboundaries, ): path = bout_xyt_example_files( tmp_path_factory, nxpe=4, nype=6, nt=1, lengths=(6, 4, 4, 7), guards={"x": 2, "y": 2}, squashed=True, write_to_disk=True, topology="upper-disconnected-double-null", ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=path, keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_load.py:390: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69ed73700> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ______________ TestOpen.test_squashed_doublenull_file[True-True] _______________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = keep_xboundaries = True, keep_yboundaries = True @pytest.mark.parametrize( "keep_xboundaries", [False, pytest.param(True, marks=pytest.mark.long)] ) @pytest.mark.parametrize( "keep_yboundaries", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_squashed_doublenull_file( self, tmp_path_factory, bout_xyt_example_files, keep_xboundaries, keep_yboundaries, ): path = bout_xyt_example_files( tmp_path_factory, nxpe=4, nype=6, nt=1, lengths=(6, 4, 4, 7), guards={"x": 2, "y": 2}, squashed=True, write_to_disk=True, topology="upper-disconnected-double-null", ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=path, keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_load.py:390: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69ef09ae0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ________________________ TestOpen.test_combine_along_x _________________________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = def test_combine_along_x(self, tmp_path_factory, bout_xyt_example_files): path = bout_xyt_example_files( tmp_path_factory, nxpe=4, nype=1, nt=1, syn_data_type="stepped", write_to_disk=True, ) with pytest.warns(UserWarning): > actual = open_boutdataset(datapath=path, keep_xboundaries=False) xbout/tests/test_load.py:414: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e4f0ac0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ________________________ TestOpen.test_combine_along_y _________________________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = def test_combine_along_y(self, tmp_path_factory, bout_xyt_example_files): path = bout_xyt_example_files( tmp_path_factory, nxpe=1, nype=3, nt=1, syn_data_type="stepped", write_to_disk=True, ) with pytest.warns(UserWarning): > actual = open_boutdataset(datapath=path, keep_xboundaries=False) xbout/tests/test_load.py:450: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69e5b5ba0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _____________ TestOpen.test_combine_along_xy[lengths0-False-False] _____________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = bout_v5 = False, metric_3D = False, lengths = (6, 2, 4, 7) @pytest.mark.parametrize( "bout_v5,metric_3D", [(False, False), (True, False), (True, True)] ) @pytest.mark.parametrize("lengths", [(6, 2, 4, 7), (6, 2, 4, 1)]) def test_combine_along_xy( self, tmp_path_factory, bout_xyt_example_files, bout_v5, metric_3D, lengths ): path = bout_xyt_example_files( tmp_path_factory, nxpe=4, nype=3, nt=1, lengths=lengths, syn_data_type="stepped", write_to_disk=True, bout_v5=bout_v5, metric_3D=metric_3D, ) with pytest.warns(UserWarning): > actual = open_boutdataset(datapath=path, keep_xboundaries=False) xbout/tests/test_load.py:497: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69fa942e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _____________ TestOpen.test_combine_along_xy[lengths0-True-False] ______________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = bout_v5 = True, metric_3D = False, lengths = (6, 2, 4, 7) @pytest.mark.parametrize( "bout_v5,metric_3D", [(False, False), (True, False), (True, True)] ) @pytest.mark.parametrize("lengths", [(6, 2, 4, 7), (6, 2, 4, 1)]) def test_combine_along_xy( self, tmp_path_factory, bout_xyt_example_files, bout_v5, metric_3D, lengths ): path = bout_xyt_example_files( tmp_path_factory, nxpe=4, nype=3, nt=1, lengths=lengths, syn_data_type="stepped", write_to_disk=True, bout_v5=bout_v5, metric_3D=metric_3D, ) with pytest.warns(UserWarning): > actual = open_boutdataset(datapath=path, keep_xboundaries=False) xbout/tests/test_load.py:497: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69ec7a020> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ____________________________ TestOpen.test_toroidal ____________________________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = def test_toroidal(self, tmp_path_factory, bout_xyt_example_files): # actually write these to disk to test the loading fully path = bout_xyt_example_files( tmp_path_factory, nxpe=3, nype=3, nt=1, syn_data_type="stepped", grid="grid", write_to_disk=True, ) > actual = open_boutdataset( datapath=path, geometry="toroidal", gridfilepath=path.parent.joinpath("grid.nc"), ) xbout/tests/test_load.py:555: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69f790ee0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________________________ TestOpen.test_salpha _____________________________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = def test_salpha(self, tmp_path_factory, bout_xyt_example_files): path = bout_xyt_example_files( tmp_path_factory, nxpe=3, nype=3, nt=1, syn_data_type="stepped", grid="grid", write_to_disk=True, ) > actual = open_boutdataset( datapath=path, geometry="s-alpha", gridfilepath=path.parent.joinpath("grid.nc"), ) xbout/tests/test_load.py:589: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69ee49fc0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying s-alpha geometry conventions ___________________________ TestOpen.test_drop_vars ____________________________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = def test_drop_vars(self, tmp_path_factory, bout_xyt_example_files): datapath = bout_xyt_example_files( tmp_path_factory, nxpe=4, nype=1, nt=1, syn_data_type="stepped", write_to_disk=True, ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=datapath, keep_xboundaries=False, drop_variables=["T"] ) xbout/tests/test_load.py:618: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69f74db40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-0-False-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69f72f640> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-0-False-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69f0cdfc0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-0-False-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68cef4d00> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-0-False-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68cf90ca0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-0-True-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c5b84c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-0-True-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c665660> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-0-True-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c5a8d60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-0-True-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69f790940> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-0-False-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69f1c6e00> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-0-False-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c37c520> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-0-False-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c413b20> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-0-False-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c454ca0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-0-True-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c49c5e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-0-True-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c496140> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-0-True-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c568e20> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-0-True-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69f0cff40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-1-False-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68cf52c80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-1-False-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69f875a20> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-1-False-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69f0bcca0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-1-False-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68cf1c3a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-1-True-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68cf723e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-1-True-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c5bd240> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-1-True-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c61f520> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-1-True-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c49ee60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-1-False-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69ebffa60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-1-False-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69df7ece0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-1-False-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c5403a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-1-False-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c4cb9a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-1-True-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c3a4ca0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-1-True-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c3b4400> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-1-True-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c159f60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-1-True-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c601a20> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-2-False-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = 2, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68cedc340> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-2-False-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = 2, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c5da6e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-2-False-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = 2, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69f78d900> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-2-False-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = 2, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69f774ca0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-2-True-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = 2, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69f0906a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-2-True-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = 2, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68cf2e200> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-2-True-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = 2, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c0807c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-2-True-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = 2, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c152f80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-2-False-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = 2, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69fb01540> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-2-False-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = 2, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c4cd7e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-2-False-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = 2, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c65b580> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-2-False-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = 2, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c5dcca0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-2-True-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = 2, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c4684c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-2-True-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = 2, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c3f2020> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-2-True-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = 2, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c4a0d00> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-2-True-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = 2, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68cf910c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-0-False-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68cf50640> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-0-False-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69f6a6a40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-0-False-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c4ba140> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-0-False-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c139a20> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-0-True-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c699420> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-0-True-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c5cf040> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-0-True-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c4683a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-0-True-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c521840> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-0-False-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c473a60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-0-False-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69f700700> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-0-False-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c4056c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-0-False-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c584a00> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-0-True-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c49a560> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-0-True-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c61d540> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-0-True-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c6a7ee0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-0-True-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69f14aaa0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-1-False-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c5d9120> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-1-False-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68ced9ae0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-1-False-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69f7498a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-1-False-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c658ca0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-1-True-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c0d4640> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-1-True-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c09e1a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-1-True-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c434fa0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-1-True-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c3ceb00> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-1-False-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c5ff1c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-1-False-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69f328dc0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-1-False-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c37fca0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-1-False-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69f1c7820> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-1-True-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c523820> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-1-True-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69fb7dfc0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-1-True-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c4bcca0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-1-True-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c5cc820> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-2-False-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = 2, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c3c93c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-2-False-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = 2, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c0d5180> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-2-False-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = 2, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68cf5f280> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-2-False-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = 2, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69fafaf20> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-2-True-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = 2, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c4ed4e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-2-True-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = 2, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69f335c60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-2-True-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = 2, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c0d8ca0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-2-True-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = 2, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c3d84c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-2-False-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = 2, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c40e3e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-2-False-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = 2, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c651060> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-2-False-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = 2, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c48b520> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-2-False-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = 2, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c56ab60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-2-True-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = 2, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c3d8520> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-2-True-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = 2, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69f385840> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-2-True-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = 2, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c406500> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-2-True-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = 2, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c3d4a00> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestPlot.test_region_limiter[0-False-False-guards0] ______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c61b760> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestPlot.test_region_limiter[0-False-False-guards1] ______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c4698a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestPlot.test_region_limiter[0-False-False-guards2] ______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c63e800> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestPlot.test_region_limiter[0-False-False-guards3] ______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c623460> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[0-True-False-guards0] ______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c3fe560> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[0-True-False-guards1] ______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c0f7b80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[0-True-False-guards2] ______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c0fb100> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[0-True-False-guards3] ______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c3df340> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[0-False-True-guards0] ______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c40ec80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[0-False-True-guards1] ______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c4bbfa0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[0-False-True-guards2] ______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c653760> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[0-False-True-guards3] ______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69f336c80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[0-True-True-guards0] _______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c15e6e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[0-True-True-guards1] _______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c60dc60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[0-True-True-guards2] _______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c484e80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[0-True-True-guards3] _______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69f6b4e80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestPlot.test_region_limiter[1-False-False-guards0] ______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c646560> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestPlot.test_region_limiter[1-False-False-guards1] ______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c5636a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestPlot.test_region_limiter[1-False-False-guards2] ______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c1270a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestPlot.test_region_limiter[1-False-False-guards3] ______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c4c5000> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[1-True-False-guards0] ______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c5fcdc0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[1-True-False-guards1] ______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c45af20> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[1-True-False-guards2] ______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c5862c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[1-True-False-guards3] ______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c37bca0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[1-False-True-guards0] ______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c60e9e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[1-False-True-guards1] ______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c15e440> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[1-False-True-guards2] ______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c597340> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[1-False-True-guards3] ______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c6538e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[1-True-True-guards0] _______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c4bb100> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[1-True-True-guards1] _______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c40fe80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[1-True-True-guards2] _______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c0dace0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[1-True-True-guards3] _______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c3cf0a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestPlot.test_region_limiter[2-False-False-guards0] ______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = 2 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c3fe680> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestPlot.test_region_limiter[2-False-False-guards1] ______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = 2 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c463f40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestPlot.test_region_limiter[2-False-False-guards2] ______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = 2 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c4a0160> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestPlot.test_region_limiter[2-False-False-guards3] ______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = 2 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c3d4160> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[2-True-False-guards0] ______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = 2 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c585cc0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[2-True-False-guards1] ______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = 2 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c4f09a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[2-True-False-guards2] ______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = 2 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c3ab0a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[2-True-False-guards3] ______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = 2 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c4c6c80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[2-False-True-guards0] ______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = 2 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c125ea0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[2-False-True-guards1] ______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = 2 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c561ae0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[2-False-True-guards2] ______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = 2 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c644880> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[2-False-True-guards3] ______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = 2 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69ee4a1a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[2-True-True-guards0] _______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = 2 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69f9aa560> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[2-True-True-guards1] _______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = 2 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c1510c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[2-True-True-guards2] _______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = 2 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c5dae60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[2-True-True-guards3] _______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = 2 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c462aa0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _______________ TestRegion.test_region_core[False-False-guards0] _______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_core( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="core", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:45: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69f276c80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _______________ TestRegion.test_region_core[False-False-guards1] _______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_core( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="core", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:45: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c43d0c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _______________ TestRegion.test_region_core[False-False-guards2] _______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_core( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="core", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:45: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c3b0f40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _______________ TestRegion.test_region_core[False-False-guards3] _______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_core( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="core", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:45: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68ceee4a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _______________ TestRegion.test_region_core[True-False-guards0] ________________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_core( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="core", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:45: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c446500> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _______________ TestRegion.test_region_core[True-False-guards1] ________________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_core( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="core", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:45: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c07ebc0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _______________ TestRegion.test_region_core[True-False-guards2] ________________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_core( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="core", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:45: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c082aa0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _______________ TestRegion.test_region_core[True-False-guards3] ________________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_core( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="core", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:45: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69f6b6aa0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _______________ TestRegion.test_region_core[False-True-guards0] ________________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_core( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="core", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:45: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c3a7700> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _______________ TestRegion.test_region_core[False-True-guards1] ________________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_core( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="core", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:45: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68cf7ee60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _______________ TestRegion.test_region_core[False-True-guards2] ________________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_core( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="core", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:45: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68cf2eda0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _______________ TestRegion.test_region_core[False-True-guards3] ________________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_core( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="core", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:45: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68cf929e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________________ TestRegion.test_region_core[True-True-guards0] ________________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_core( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="core", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:45: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c48aec0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________________ TestRegion.test_region_core[True-True-guards1] ________________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_core( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="core", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:45: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c3e9840> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________________ TestRegion.test_region_core[True-True-guards2] ________________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_core( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="core", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:45: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c427dc0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________________ TestRegion.test_region_core[True-True-guards3] ________________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_core( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="core", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:45: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c50a4a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _______________ TestRegion.test_region_sol[False-False-guards0] ________________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_sol( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="sol", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:91: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c604b20> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _______________ TestRegion.test_region_sol[False-False-guards1] ________________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_sol( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="sol", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:91: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c60f9a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _______________ TestRegion.test_region_sol[False-False-guards2] ________________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_sol( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="sol", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:91: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c5fab00> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _______________ TestRegion.test_region_sol[False-False-guards3] ________________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_sol( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="sol", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:91: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c43a680> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________________ TestRegion.test_region_sol[True-False-guards0] ________________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_sol( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="sol", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:91: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c479000> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________________ TestRegion.test_region_sol[True-False-guards1] ________________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_sol( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="sol", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:91: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c476740> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________________ TestRegion.test_region_sol[True-False-guards2] ________________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_sol( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="sol", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:91: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c4b39a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________________ TestRegion.test_region_sol[True-False-guards3] ________________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_sol( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="sol", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:91: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c24ef20> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________________ TestRegion.test_region_sol[False-True-guards0] ________________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_sol( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="sol", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:91: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c621a20> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________________ TestRegion.test_region_sol[False-True-guards1] ________________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_sol( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="sol", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:91: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c5e1de0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________________ TestRegion.test_region_sol[False-True-guards2] ________________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_sol( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="sol", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:91: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c405000> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________________ TestRegion.test_region_sol[False-True-guards3] ________________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_sol( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="sol", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:91: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69f7485e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________________ TestRegion.test_region_sol[True-True-guards0] _________________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_sol( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="sol", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:91: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c378ca0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________________ TestRegion.test_region_sol[True-True-guards1] _________________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_sol( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="sol", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:91: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c4c6bc0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________________ TestRegion.test_region_sol[True-True-guards2] _________________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_sol( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="sol", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:91: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c0c18a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________________ TestRegion.test_region_sol[True-True-guards3] _________________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_sol( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="sol", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:91: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c080dc0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ____________ TestRegion.test_region_limiter[0-False-False-guards0] _____________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False region_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c245ae0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ____________ TestRegion.test_region_limiter[0-False-False-guards1] _____________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False region_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c138e80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ____________ TestRegion.test_region_limiter[0-False-False-guards2] _____________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False region_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c63fbe0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ____________ TestRegion.test_region_limiter[0-False-False-guards3] _____________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False region_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c266ce0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestRegion.test_region_limiter[0-True-False-guards0] _____________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False region_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c202fe0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestRegion.test_region_limiter[0-True-False-guards1] _____________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False region_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c215840> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestRegion.test_region_limiter[0-True-False-guards2] _____________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False region_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c17d2a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestRegion.test_region_limiter[0-True-False-guards3] _____________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False region_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c124be0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestRegion.test_region_limiter[0-False-True-guards0] _____________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True region_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c135c00> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestRegion.test_region_limiter[0-False-True-guards1] _____________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True region_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c10e620> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestRegion.test_region_limiter[0-False-True-guards2] _____________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True region_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c19b0a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestRegion.test_region_limiter[0-False-True-guards3] _____________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True region_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c5790c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestRegion.test_region_limiter[0-True-True-guards0] ______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True region_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c46a5c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestRegion.test_region_limiter[0-True-True-guards1] ______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True region_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69f717c40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestRegion.test_region_limiter[0-True-True-guards2] ______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True region_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68cf92e00> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestRegion.test_region_limiter[0-True-True-guards3] ______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True region_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c41d3c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ____________ TestRegion.test_region_limiter[1-False-False-guards0] _____________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False region_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c3e8820> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ____________ TestRegion.test_region_limiter[1-False-False-guards1] _____________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False region_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c425180> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ____________ TestRegion.test_region_limiter[1-False-False-guards2] _____________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False region_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c1639a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ____________ TestRegion.test_region_limiter[1-False-False-guards3] _____________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False region_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6856d3ca0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestRegion.test_region_limiter[1-True-False-guards0] _____________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False region_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c173700> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestRegion.test_region_limiter[1-True-False-guards1] _____________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False region_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c258340> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestRegion.test_region_limiter[1-True-False-guards2] _____________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False region_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c08c160> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestRegion.test_region_limiter[1-True-False-guards3] _____________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False region_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c3d5ea0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestRegion.test_region_limiter[1-False-True-guards0] _____________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True region_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c146740> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestRegion.test_region_limiter[1-False-True-guards1] _____________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True region_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c11f400> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestRegion.test_region_limiter[1-False-True-guards2] _____________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True region_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c1dd7e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestRegion.test_region_limiter[1-False-True-guards3] _____________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True region_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c240e20> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestRegion.test_region_limiter[1-True-True-guards0] ______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True region_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c2a8be0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestRegion.test_region_limiter[1-True-True-guards1] ______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True region_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c1ce140> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestRegion.test_region_limiter[1-True-True-guards2] ______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True region_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c11c6a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestRegion.test_region_limiter[1-True-True-guards3] ______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True region_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69f74a380> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestRegion.test_region_xpoint[False-False-guards0] ______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_xpoint( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="xpoint", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:215: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c61e8c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestRegion.test_region_xpoint[False-False-guards1] ______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_xpoint( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="xpoint", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:215: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c2a5c60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestRegion.test_region_xpoint[False-False-guards2] ______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_xpoint( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="xpoint", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:215: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6856ca380> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestRegion.test_region_xpoint[False-False-guards3] ______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_xpoint( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="xpoint", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:215: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68565fac0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestRegion.test_region_xpoint[True-False-guards0] _______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_xpoint( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="xpoint", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:215: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6855ef3a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestRegion.test_region_xpoint[True-False-guards1] _______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_xpoint( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="xpoint", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:215: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68560bd00> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestRegion.test_region_xpoint[True-False-guards2] _______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_xpoint( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="xpoint", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:215: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c10c160> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestRegion.test_region_xpoint[True-False-guards3] _______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_xpoint( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="xpoint", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:215: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c147dc0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestRegion.test_region_xpoint[False-True-guards0] _______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_xpoint( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="xpoint", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:215: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c15c640> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestRegion.test_region_xpoint[False-True-guards1] _______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_xpoint( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="xpoint", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:215: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c25f820> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestRegion.test_region_xpoint[False-True-guards2] _______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_xpoint( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="xpoint", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:215: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68577bdc0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestRegion.test_region_xpoint[False-True-guards3] _______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_xpoint( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="xpoint", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:215: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c1bdae0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _______________ TestRegion.test_region_xpoint[True-True-guards0] _______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_xpoint( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="xpoint", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:215: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe685602140> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _______________ TestRegion.test_region_xpoint[True-True-guards1] _______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_xpoint( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="xpoint", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:215: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6856764a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _______________ TestRegion.test_region_xpoint[True-True-guards2] _______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_xpoint( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="xpoint", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:215: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6856aad40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _______________ TestRegion.test_region_xpoint[True-True-guards3] _______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_xpoint( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="xpoint", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:215: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68542abc0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ____________ TestRegion.test_region_singlenull[False-False-guards0] ____________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_singlenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="single-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:409: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c541360> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ____________ TestRegion.test_region_singlenull[False-False-guards1] ____________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_singlenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="single-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:409: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c618400> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ____________ TestRegion.test_region_singlenull[False-False-guards2] ____________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_singlenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="single-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:409: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6857a2140> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ____________ TestRegion.test_region_singlenull[False-False-guards3] ____________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_singlenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="single-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:409: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6854434c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ____________ TestRegion.test_region_singlenull[True-False-guards0] _____________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_singlenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="single-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:409: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6853dad40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ____________ TestRegion.test_region_singlenull[True-False-guards1] _____________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_singlenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="single-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:409: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6854acbe0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ____________ TestRegion.test_region_singlenull[True-False-guards2] _____________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_singlenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="single-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:409: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6854251e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ____________ TestRegion.test_region_singlenull[True-False-guards3] _____________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_singlenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="single-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:409: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68552b100> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ____________ TestRegion.test_region_singlenull[False-True-guards0] _____________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_singlenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="single-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:409: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6856aa980> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ____________ TestRegion.test_region_singlenull[False-True-guards1] _____________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_singlenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="single-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:409: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c28d120> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ____________ TestRegion.test_region_singlenull[False-True-guards2] _____________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_singlenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="single-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:409: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c37c100> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ____________ TestRegion.test_region_singlenull[False-True-guards3] _____________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_singlenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="single-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:409: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c5e81c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestRegion.test_region_singlenull[True-True-guards0] _____________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_singlenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="single-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:409: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c130fa0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestRegion.test_region_singlenull[True-True-guards1] _____________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_singlenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="single-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:409: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6856d10c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestRegion.test_region_singlenull[True-True-guards2] _____________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_singlenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="single-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:409: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c46f940> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestRegion.test_region_singlenull[True-True-guards3] _____________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_singlenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="single-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:409: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68560c760> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _______ TestRegion.test_region_connecteddoublenull[False-False-guards0] ________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_connecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="connected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:578: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6855765c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _______ TestRegion.test_region_connecteddoublenull[False-False-guards1] ________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_connecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="connected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:578: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69f4682e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _______ TestRegion.test_region_connecteddoublenull[False-False-guards2] ________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_connecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="connected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:578: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6856da920> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _______ TestRegion.test_region_connecteddoublenull[False-False-guards3] ________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_connecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="connected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:578: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6851fa4a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________ TestRegion.test_region_connecteddoublenull[True-False-guards0] ________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_connecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="connected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:578: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe685225f60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________ TestRegion.test_region_connecteddoublenull[True-False-guards1] ________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_connecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="connected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:578: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6851c4700> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________ TestRegion.test_region_connecteddoublenull[True-False-guards2] ________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_connecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="connected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:578: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c29c1c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________ TestRegion.test_region_connecteddoublenull[True-False-guards3] ________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_connecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="connected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:578: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c2841c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________ TestRegion.test_region_connecteddoublenull[False-True-guards0] ________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_connecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="connected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:578: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c27c100> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________ TestRegion.test_region_connecteddoublenull[False-True-guards1] ________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_connecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="connected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:578: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68560d2a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________ TestRegion.test_region_connecteddoublenull[False-True-guards2] ________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_connecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="connected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:578: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe685663ca0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________ TestRegion.test_region_connecteddoublenull[False-True-guards3] ________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_connecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="connected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:578: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c13a500> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________ TestRegion.test_region_connecteddoublenull[True-True-guards0] _________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_connecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="connected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:578: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c164d00> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________ TestRegion.test_region_connecteddoublenull[True-True-guards1] _________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_connecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="connected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:578: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6856ab760> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________ TestRegion.test_region_connecteddoublenull[True-True-guards2] _________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_connecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="connected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:578: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c302d40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________ TestRegion.test_region_connecteddoublenull[True-True-guards3] _________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_connecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="connected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:578: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c4ecd60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[lower-disconnected-double-null-False-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c566380> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[lower-disconnected-double-null-False-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c4c8520> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[lower-disconnected-double-null-False-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c2f4400> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[lower-disconnected-double-null-False-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c458280> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[lower-disconnected-double-null-True-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68562c1c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[lower-disconnected-double-null-True-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c35a380> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[lower-disconnected-double-null-True-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c2ba9e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[lower-disconnected-double-null-True-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6852141c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[lower-disconnected-double-null-False-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe685237b20> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[lower-disconnected-double-null-False-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe684e4cca0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[lower-disconnected-double-null-False-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c13a680> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[lower-disconnected-double-null-False-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c4efbe0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[lower-disconnected-double-null-True-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6856391e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[lower-disconnected-double-null-True-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c108d60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[lower-disconnected-double-null-True-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c11f2e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[lower-disconnected-double-null-True-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6855d8b80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[upper-disconnected-double-null-False-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c562b60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[upper-disconnected-double-null-False-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe684fd6ec0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[upper-disconnected-double-null-False-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68513ce80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[upper-disconnected-double-null-False-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c4c6860> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[upper-disconnected-double-null-True-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c28e9e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[upper-disconnected-double-null-True-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c20df60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[upper-disconnected-double-null-True-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe684decca0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[upper-disconnected-double-null-True-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c2a0640> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[upper-disconnected-double-null-False-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6850ca4a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[upper-disconnected-double-null-False-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6852a5060> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[upper-disconnected-double-null-False-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe684b02080> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[upper-disconnected-double-null-False-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe685143100> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[upper-disconnected-double-null-True-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c14a080> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[upper-disconnected-double-null-True-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c130400> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[upper-disconnected-double-null-True-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c28ff40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[upper-disconnected-double-null-True-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c4f7c40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-False-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c3d40a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-False-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe684dcec80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-False-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe684fe4d00> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-False-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe685111ba0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-True-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6850cb880> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-True-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c29fee0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-True-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68cede320> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-True-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c0f0040> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-False-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe684db9f60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-False-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6851d4ca0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-False-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6850fc700> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-False-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6851322c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-True-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe684fe51e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-True-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c3d47c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-True-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6854a66e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-True-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c1bd180> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-False-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = {'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c245480> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-False-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = {'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c25b520> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-False-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = {'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c4d73a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-False-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = {'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6850028c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-True-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = {'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe685162c20> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-True-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = {'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe684b8f2e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-True-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = {'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe685442b60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-True-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = {'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6851c6500> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-False-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = {'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe685299900> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-False-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = {'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68529d9c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-False-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = {'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c2ac340> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-False-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = {'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68515dd80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-True-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = {'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68517eb60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-True-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = {'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe684b243a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-True-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = {'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe685000f40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-True-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = {'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe684fd7340> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-False-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = {'theta': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6855db580> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-False-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = {'theta': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c4ccfa0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-False-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = {'theta': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c266bc0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-False-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = {'theta': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c334220> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-True-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = {'theta': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c165fc0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-True-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = {'theta': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe685174f40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-True-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = {'theta': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe684b6a740> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-True-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = {'theta': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6851bada0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-False-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = {'theta': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6854b29e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-False-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = {'theta': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c28c8e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-False-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = {'theta': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe684e82aa0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-False-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = {'theta': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe685131a20> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-True-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = {'theta': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe684de2560> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-True-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = {'theta': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe685125300> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-True-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = {'theta': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c231540> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-True-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = {'theta': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c08e2c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-False-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = {'theta': 1, 'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe685600a60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-False-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = {'theta': 1, 'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c57f160> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-False-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = {'theta': 1, 'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c5e9d80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-False-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = {'theta': 1, 'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c111f60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-True-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = {'theta': 1, 'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c14b7c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-True-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = {'theta': 1, 'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe685162260> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-True-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = {'theta': 1, 'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe684fb8dc0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-True-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = {'theta': 1, 'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe684b1dae0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-False-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = {'theta': 1, 'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe684de2380> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-False-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = {'theta': 1, 'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68529c3a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-False-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = {'theta': 1, 'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe685754e20> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-False-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = {'theta': 1, 'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c2ea080> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-True-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = {'theta': 1, 'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe684e7d300> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-True-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = {'theta': 1, 'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe684b00d60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-True-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = {'theta': 1, 'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c325240> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-True-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = {'theta': 1, 'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe684b94a00> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-False-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c242980> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-False-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe684b8a620> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-False-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c30b520> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-False-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c3561a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-True-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c49fe80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-True-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68559d780> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-True-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c1372e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-True-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68563bf40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-False-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe684b47b20> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-False-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c216ec0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-False-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c3258a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-False-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe685293040> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-True-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c318280> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-True-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c27c7c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-True-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c28e740> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-True-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c297820> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-False-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe684de3940> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-False-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c240ca0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-False-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6849d0280> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-False-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe685731ea0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-True-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c25d480> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-True-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c203d00> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-True-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c124fa0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-True-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c1dea40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-False-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c560a00> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-False-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe684b1ea40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-False-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe684fcf040> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-False-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe684a281c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-True-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c230700> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-True-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe684db8100> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-True-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c31d180> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-True-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6854b3dc0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-False-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = {'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c2f5180> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-False-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = {'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe684b01fc0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-False-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = {'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c32dba0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-False-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = {'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c1e9060> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-True-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = {'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c2014e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-True-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = {'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c593940> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-True-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = {'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c34c640> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-True-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = {'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c4d7ac0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-False-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = {'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6855752a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-False-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = {'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c63fd00> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-False-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = {'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c5f4880> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-False-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = {'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c334ee0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-True-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = {'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c146f80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-True-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = {'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe684a868c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-True-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = {'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c2034c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-True-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = {'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68514e0e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-False-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = {'theta': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6851d0280> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-False-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = {'theta': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c60b460> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-False-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = {'theta': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe684e81840> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-False-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = {'theta': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c4275e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-True-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = {'theta': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c187ee0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-True-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = {'theta': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe684de04c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-True-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = {'theta': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68513a2c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-True-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = {'theta': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe684b1ada0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-False-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = {'theta': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c57dd80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-False-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = {'theta': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6853fdf00> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-False-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = {'theta': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68516d8a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-False-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = {'theta': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68513dd80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-True-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = {'theta': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c316ce0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-True-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = {'theta': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6850207c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-True-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = {'theta': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe685003e80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-True-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = {'theta': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6849daf20> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-False-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = {'theta': 1, 'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c5ea620> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-False-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = {'theta': 1, 'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6850fb8e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-False-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = {'theta': 1, 'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6851204c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-False-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = {'theta': 1, 'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68cf512a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-True-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = {'theta': 1, 'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6850fd540> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-True-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = {'theta': 1, 'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe684ded660> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-True-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = {'theta': 1, 'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c6650c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-True-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = {'theta': 1, 'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe684b51cc0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-False-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = {'theta': 1, 'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe684a45420> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-False-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = {'theta': 1, 'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c68f220> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-False-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = {'theta': 1, 'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe684b158a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-False-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = {'theta': 1, 'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c4f8940> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-True-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = {'theta': 1, 'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c223ca0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-True-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = {'theta': 1, 'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68516c7c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-True-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = {'theta': 1, 'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c170640> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-True-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = {'theta': 1, 'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe685428e80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-False-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c165cc0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-False-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6849bc520> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-False-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6851ea080> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-False-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c2a4b80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-True-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6852642e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-True-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c33cac0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-True-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6853bc760> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-True-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c294760> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-False-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68523bb80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-False-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c234280> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-False-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe684c3c5e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-False-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c165540> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-True-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c178fa0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-True-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe69c4f7e20> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-True-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe68c27b760> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-True-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7fe6854eca60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions =============================== warnings summary =============================== xbout/tests/test_against_collect.py: 21 warnings xbout/tests/test_animate.py: 38 warnings xbout/tests/test_boutdataset.py: 19 warnings xbout/tests/test_load.py: 18 warnings /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/xbout/load.py:813: FutureWarning: The return type of `Dataset.dims` will be changed to return a set of dimension names in future, in order to be more consistent with `DataArray.dims`. To access a mapping from dimension names to lengths, please use `Dataset.sizes`. ds, "MXSUB", default=ds.dims["x"] - 2 * mxg, info=info xbout/tests/test_against_collect.py: 21 warnings xbout/tests/test_animate.py: 38 warnings xbout/tests/test_boutdataset.py: 19 warnings xbout/tests/test_load.py: 18 warnings /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/xbout/load.py:816: FutureWarning: The return type of `Dataset.dims` will be changed to return a set of dimension names in future, in order to be more consistent with `DataArray.dims`. To access a mapping from dimension names to lengths, please use `Dataset.sizes`. ds, "MYSUB", default=ds.dims["y"] - 2 * myg, info=info xbout/tests/test_against_collect.py: 21 warnings xbout/tests/test_animate.py: 38 warnings xbout/tests/test_boutdataset.py: 19 warnings xbout/tests/test_load.py: 18 warnings /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/xbout/load.py:831: FutureWarning: The return type of `Dataset.dims` will be changed to return a set of dimension names in future, in order to be more consistent with `DataArray.dims`. To access a mapping from dimension names to lengths, please use `Dataset.sizes`. nx_file = ds.dims["x"] xbout/tests/test_against_collect.py: 21 warnings xbout/tests/test_animate.py: 38 warnings xbout/tests/test_boutdataset.py: 19 warnings xbout/tests/test_load.py: 18 warnings /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/xbout/load.py:832: FutureWarning: The return type of `Dataset.dims` will be changed to return a set of dimension names in future, in order to be more consistent with `DataArray.dims`. To access a mapping from dimension names to lengths, please use `Dataset.sizes`. ny_file = ds.dims["y"] xbout/tests/test_against_collect.py: 5 warnings xbout/tests/test_animate.py: 38 warnings xbout/tests/test_boutdataarray.py: 56 warnings xbout/tests/test_boutdataset.py: 84 warnings xbout/tests/test_geometries.py: 1 warning xbout/tests/test_grid.py: 5 warnings xbout/tests/test_load.py: 26 warnings xbout/tests/test_plot.py: 144 warnings xbout/tests/test_region.py: 304 warnings /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/xbout/geometries.py:147: FutureWarning: The return type of `Dataset.dims` will be changed to return a set of dimension names in future, in order to be more consistent with `DataArray.dims`. To access a mapping from dimension names to lengths, please use `Dataset.sizes`. nx = updated_ds.dims[xcoord] xbout/tests/test_against_collect.py: 5 warnings xbout/tests/test_animate.py: 38 warnings xbout/tests/test_boutdataarray.py: 56 warnings xbout/tests/test_boutdataset.py: 84 warnings xbout/tests/test_load.py: 27 warnings xbout/tests/test_plot.py: 144 warnings xbout/tests/test_region.py: 304 warnings /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/xbout/geometries.py:184: FutureWarning: The return type of `Dataset.dims` will be changed to return a set of dimension names in future, in order to be more consistent with `DataArray.dims`. To access a mapping from dimension names to lengths, please use `Dataset.sizes`. nz = updated_ds.dims[zcoord] xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_integrate_midpoints_slab xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_integrate_midpoints_salpha[CELL_CENTRE] xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_integrate_midpoints_salpha[CELL_XLOW] xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_integrate_midpoints_salpha[CELL_YLOW] xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_integrate_midpoints_salpha[CELL_ZLOW] xbout/tests/test_boutdataset.py::TestSaveRestart::test_from_restart_to_restart xbout/tests/test_grid.py::TestOpenGrid::test_open_grid_extra_dims xbout/tests/test_load.py::TestOpen::test_restarts /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/xbout/load.py:350: UserWarning: No geometry type found, no physical coordinates will be added warn("No geometry type found, no physical coordinates will be added") xbout/tests/test_load.py::TestOpen::test_combine_along_xy[lengths0-True-True] xbout/tests/test_load.py::TestOpen::test_combine_along_xy[lengths1-False-False] xbout/tests/test_load.py::TestOpen::test_combine_along_xy[lengths1-True-False] xbout/tests/test_load.py::TestOpen::test_combine_along_xy[lengths1-True-True] /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/xbout/tests/test_load.py:520: UserWarning: rename 't_array' to 't' does not create an index anymore. Try using swap_dims instead or use set_index after rename to create an indexed coordinate. expected = expected.set_coords(["t_array", "dx", "dy", "dz"]).rename( xbout/tests/test_load.py::TestOpen::test_salpha /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/xbout/geometries.py:482: UserWarning: rename 'x' to 'r' does not create an index anymore. Try using swap_dims instead or use set_index after rename to create an indexed coordinate. ds = ds.rename(x="r") -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ============================== slowest durations =============================== 2.96s call xbout/tests/test_against_collect.py::TestAccuracyAgainstOldCollect::test_new_collect_indexing_slice 1.57s call xbout/tests/test_against_collect.py::TestAccuracyAgainstOldCollect::test_new_collect_indexing_list 1.52s call xbout/tests/test_against_collect.py::TestAccuracyAgainstOldCollect::test_new_collect_indexing_int 1.37s call xbout/tests/test_load.py::TestOpen::test_combine_along_xy[lengths1-True-True] 1.32s call xbout/tests/test_load.py::TestOpen::test_combine_along_xy[lengths0-True-True] 1.26s call xbout/tests/test_boutdataset.py::TestSaveRestart::test_to_restart_change_npe_doublenull_expect_fail[npes0] 1.26s call xbout/tests/test_boutdataset.py::TestSaveRestart::test_to_restart_change_npe_doublenull 1.20s call xbout/tests/test_load.py::TestOpen::test_combine_along_xy[lengths1-True-False] 1.19s call xbout/tests/test_load.py::TestOpen::test_combine_along_xy[lengths1-False-False] 1.16s call xbout/tests/test_boutdataset.py::TestSave::test_save_all 1.03s call xbout/tests/test_boutdataset.py::TestSave::test_reload_all[None] 0.82s call xbout/tests/test_load.py::TestOpen::test_combine_along_xy[lengths0-False-False] 0.78s call xbout/tests/test_load.py::TestOpen::test_combine_along_xy[lengths0-True-False] 0.71s call xbout/tests/test_boutdataset.py::TestSaveRestart::test_from_restart_to_restart 0.69s setup xbout/tests/test_animate.py::TestAnimate::test_animate_list_controls_arg[controls5] 0.68s setup xbout/tests/test_animate.py::TestAnimate::test_animate_list_logscale_list 0.68s setup xbout/tests/test_animate.py::TestAnimate::test_animate_list_subplots_adjust 0.67s setup xbout/tests/test_animate.py::TestAnimate::test_animate1D_controls_arg[controls1] 0.67s setup xbout/tests/test_animate.py::TestAnimate::test_animate_list_1d_multiline 0.65s setup xbout/tests/test_animate.py::TestAnimate::test_animate_list_fps 0.65s setup xbout/tests/test_animate.py::TestAnimate::test_animate_list_vmax 0.64s call xbout/tests/test_boutdataset.py::TestSaveRestart::test_to_restart_change_npe_doublenull_expect_fail[npes1] 0.63s setup xbout/tests/test_animate.py::TestAnimate::test_animate_list_controls_arg[controls1] 0.63s call xbout/tests/test_boutdataset.py::TestSave::test_reload_all[toroidal] 0.59s setup xbout/tests/test_animate.py::TestAnimate::test_animate2D_controls_arg[controls5] 0.59s setup xbout/tests/test_animate.py::TestAnimate::test_animate1D_controls_arg[controls4] 0.58s setup xbout/tests/test_animate.py::TestAnimate::test_animate_list_save_as 0.57s setup xbout/tests/test_animate.py::TestAnimate::test_animate_list_controls_arg[controls0] 0.57s setup xbout/tests/test_animate.py::TestAnimate::test_animate_list_logscale_float 0.57s call xbout/tests/test_against_collect.py::TestAccuracyAgainstOldCollect::test_multiple_files_along_xy 0.56s call xbout/tests/test_load.py::TestOpen::test_toroidal 0.56s setup xbout/tests/test_animate.py::TestAnimate::test_animate_list_controls_arg[controls3] 0.56s setup xbout/tests/test_animate.py::TestAnimate::test_animate_list_1d_default 0.56s setup xbout/tests/test_animate.py::TestAnimate::test_animate_list_vmin 0.56s setup xbout/tests/test_animate.py::TestAnimate::test_animate_list_ncols 0.56s setup xbout/tests/test_animate.py::TestAnimate::test_animate_list_vmin_list 0.55s setup xbout/tests/test_animate.py::TestAnimate::test_animate_list_not_enough_nrowsncols 0.55s setup xbout/tests/test_animate.py::TestAnimate::test_animate1D_controls_arg[controls0] 0.54s setup xbout/tests/test_animate.py::TestAnimate::test_animate1D_controls_arg[controls3] 0.54s setup xbout/tests/test_animate.py::TestAnimate::test_animate_list_animate_over 0.54s setup xbout/tests/test_animate.py::TestAnimate::test_animate_list_controls_arg[controls4] 0.54s setup xbout/tests/test_animate.py::TestAnimate::test_animate_list 0.54s setup xbout/tests/test_animate.py::TestAnimate::test_animate_list_vmax_list 0.53s setup xbout/tests/test_animate.py::TestAnimate::test_animate_list_logscale 0.53s setup xbout/tests/test_animate.py::TestAnimate::test_animate_list_titles_list 0.53s setup xbout/tests/test_animate.py::TestAnimate::test_animate_list_nrows 0.53s setup xbout/tests/test_animate.py::TestAnimate::test_animate_list_controls_arg[controls2] 0.53s setup xbout/tests/test_animate.py::TestAnimate::test_animate1D 0.51s setup xbout/tests/test_animate.py::TestAnimate::test_animate1D_controls_arg[controls2] 0.51s setup xbout/tests/test_animate.py::TestAnimate::test_animate2D_controls_arg[controls4] 0.51s setup xbout/tests/test_animate.py::TestAnimate::test_animate1D_controls_arg[controls5] 0.50s setup xbout/tests/test_animate.py::TestAnimate::test_animate2D_controls_arg[controls2] 0.50s setup xbout/tests/test_animate.py::TestAnimate::test_animate2D_controls_arg[controls3] 0.47s setup xbout/tests/test_animate.py::TestAnimate::test_animate2D_controls_arg[controls1] 0.45s setup xbout/tests/test_animate.py::TestAnimate::test_animate2D 0.45s setup xbout/tests/test_animate.py::TestAnimate::test_animate2D_controls_arg[controls0] 0.44s call xbout/tests/test_boutdataset.py::TestSaveRestart::test_to_restart[None] 0.36s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-False-False-guards3] 0.34s call xbout/tests/test_load.py::TestOpen::test_salpha 0.33s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_from_unstructured 0.32s call xbout/tests/test_boutdataset.py::TestSave::test_save_separate_variables 0.31s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-False-False-guards2] 0.31s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-False-False-guards2] 0.31s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-False-False-guards0] 0.30s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-False-False-guards3] 0.30s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-False-False-guards3] 0.30s call xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[False-False-guards0] 0.30s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-False-False-guards1] 0.30s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-False-False-guards1] 0.30s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-False-False-guards1] 0.30s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-False-False-guards0] 0.29s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-False-False-guards3] 0.29s call xbout/tests/test_boutdataset.py::TestSave::test_reload_separate_variables[toroidal] 0.29s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-False-False-guards0] 0.29s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_from_unstructured_unstructured_output 0.29s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-False-False-guards2] 0.29s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-False-False-guards0] 0.29s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-False-False-guards1] 0.29s call xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[False-False-guards1] 0.29s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-False-False-guards2] 0.28s call xbout/tests/test_load.py::TestOpen::test_combine_along_x 0.28s call xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[False-False-guards2] 0.28s call xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[False-False-guards3] 0.26s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel_limiter 0.25s call xbout/tests/test_region.py::TestRegion::test_region_singlenull[False-False-guards0] 0.25s call xbout/tests/test_boutdataset.py::TestSaveRestart::test_to_restart[1] 0.24s call xbout/tests/test_boutdataset.py::TestSaveRestart::test_to_restart_change_npe 0.24s call xbout/tests/test_load.py::TestOpen::test_combine_along_y 0.21s call xbout/tests/test_against_collect.py::TestAccuracyAgainstOldCollect::test_multiple_files_along_x 0.21s call xbout/tests/test_against_collect.py::TestAccuracyAgainstOldCollect::test_multiple_files_along_y 0.19s call xbout/tests/test_region.py::TestRegion::test_region_singlenull[False-False-guards1] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_xpoint[False-False-guards0] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_singlenull[False-False-guards2] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_xpoint[False-False-guards1] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_xpoint[False-False-guards3] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_singlenull[False-False-guards3] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_core[False-False-guards1] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_xpoint[False-False-guards2] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_limiter[0-False-False-guards0] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_limiter[0-False-False-guards1] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_core[False-False-guards2] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_core[False-False-guards0] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-True-False-guards0] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_core[False-False-guards3] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_limiter[0-False-False-guards3] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_limiter[0-False-False-guards2] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_sol[False-False-guards2] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_sol[False-False-guards0] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-False-True-guards3] 0.18s call xbout/tests/test_boutdataset.py::TestSave::test_reload_separate_variables_time_split[None] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_sol[False-False-guards1] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_sol[False-False-guards3] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-True-True-guards2] 0.17s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-False-True-guards0] 0.17s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_dataset 0.17s call xbout/tests/test_boutdataset.py::TestSave::test_reload_separate_variables_time_split[toroidal] 0.16s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-True-True-guards3] 0.16s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-True-True-guards3] 0.16s call xbout/tests/test_load.py::TestOpen::test_drop_vars 0.15s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-True-False-guards3] 0.15s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-True-True-guards3] 0.15s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-False-False-guards1] 0.15s call xbout/tests/test_boutdataset.py::TestSave::test_reload_separate_variables[None] 0.13s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-True-True-guards0] 0.13s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-False-False-guards2] 0.13s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-True-False-guards1] 0.13s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-True-False-guards2] 0.13s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-True-True-guards2] 0.13s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-True-True-guards3] 0.13s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-True-True-guards3] 0.13s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-True-False-guards1] 0.13s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-True-False-guards3] 0.13s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-True-False-guards0] 0.13s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-True-False-guards2] 0.13s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-True-False-guards2] 0.13s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-False-True-guards3] 0.13s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-True-False-guards1] 0.13s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-False-False-guards3] 0.13s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-False-False-guards0] 0.13s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-True-True-guards1] 0.13s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-True-True-guards0] 0.13s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-True-False-guards3] 0.13s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-True-True-guards2] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-False-True-guards0] 0.12s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-False-True-guards3] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-True-False-guards1] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-True-True-guards2] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-False-False-guards1] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-True-True-guards1] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-True-True-guards0] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-True-False-guards2] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-True-True-guards0] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-False-True-guards1] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-True-True-guards2] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-False-False-guards0] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-True-True-guards2] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-False-True-guards1] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-False-True-guards0] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-True-True-guards3] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-True-True-guards1] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-True-True-guards2] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-False-False-guards2] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-True-False-guards1] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-True-False-guards2] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-False-True-guards0] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-False-False-guards1] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-False-True-guards1] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-True-True-guards0] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-True-True-guards1] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-True-False-guards1] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-False-False-guards3] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-True-False-guards3] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-False-True-guards3] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-False-True-guards2] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-False-True-guards1] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-False-False-guards2] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-False-True-guards2] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-False-False-guards0] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-False-True-guards1] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-False-False-guards1] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-True-False-guards3] 0.12s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-False-True-guards3] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-False-True-guards2] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-False-False-guards2] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-True-True-guards1] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-False-True-guards0] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-False-True-guards3] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-True-True-guards1] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-False-True-guards2] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-True-False-guards3] 0.12s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-False-False-guards3] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-False-True-guards3] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-True-False-guards3] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-True-True-guards3] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-True-True-guards3] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-True-False-guards2] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-True-False-guards0] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-True-True-guards1] 0.12s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-False-False-guards2] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-False-True-guards2] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-False-False-guards0] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-True-True-guards1] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-False-False-guards2] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-False-False-guards3] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-True-True-guards3] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-False-False-guards1] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-False-True-guards2] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-False-False-guards0] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-False-False-guards2] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-True-True-guards0] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-False-True-guards2] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-False-True-guards0] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-True-False-guards3] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-True-False-guards0] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-True-False-guards2] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-False-True-guards3] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-True-False-guards1] 0.12s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_remove_yboundaries[False-2-0] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-True-False-guards0] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-True-False-guards3] 0.12s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-True-True-guards0] 0.12s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-False-True-guards2] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-False-True-guards1] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-True-True-guards3] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-True-False-guards2] 0.12s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_remove_yboundaries[False-2-2] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-False-False-guards0] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-False-False-guards2] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-False-True-guards0] 0.12s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-True-False-guards0] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-True-True-guards1] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-True-True-guards0] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-False-True-guards3] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-True-True-guards0] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-False-False-guards3] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-False-False-guards3] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-True-True-guards0] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-True-True-guards2] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-True-True-guards3] 0.12s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_remove_yboundaries[False-0-0] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-True-False-guards2] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-False-True-guards2] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-True-False-guards0] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-True-False-guards2] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-True-False-guards2] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-True-False-guards3] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-True-False-guards2] 0.12s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-True-True-guards3] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-False-True-guards3] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-True-False-guards3] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-True-True-guards0] 0.12s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-False-True-guards1] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-False-False-guards1] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-True-True-guards0] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-False-True-guards0] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-True-True-guards2] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-False-True-guards2] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-True-True-guards2] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-False-True-guards1] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-False-True-guards2] 0.12s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-True-True-guards2] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-True-True-guards2] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-False-True-guards3] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-False-False-guards3] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-True-False-guards3] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-False-True-guards2] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-True-False-guards0] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-False-False-guards2] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-False-False-guards3] 0.12s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_remove_yboundaries[False-0-2] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-True-True-guards1] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-True-True-guards3] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-True-False-guards0] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-True-False-guards0] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-False-True-guards2] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-True-False-guards1] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-True-False-guards0] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-True-True-guards3] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-True-True-guards3] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-False-False-guards0] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-False-False-guards3] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-True-True-guards0] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-True-True-guards1] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-True-True-guards3] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-False-True-guards0] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-True-True-guards0] 0.12s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-True-True-guards0] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-True-False-guards1] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-False-True-guards1] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-True-True-guards2] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-False-True-guards3] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-False-True-guards0] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-True-True-guards1] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-False-False-guards1] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-True-True-guards2] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-True-True-guards1] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-True-True-guards2] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-True-True-guards3] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-False-True-guards0] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-False-False-guards1] 0.12s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-True-True-guards1] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-False-True-guards1] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-False-False-guards3] 0.12s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-True-True-guards1] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-False-True-guards3] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-True-False-guards3] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-False-True-guards3] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-True-False-guards2] 0.12s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-True-False-guards2] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-True-False-guards1] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-False-False-guards3] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-False-True-guards3] 0.12s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_derivatives_doublenull 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-True-True-guards3] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-False-True-guards1] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-False-False-guards3] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-False-True-guards0] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-False-False-guards0] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-False-False-guards1] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-True-True-guards2] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-True-True-guards0] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-True-False-guards3] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-True-False-guards2] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-False-True-guards1] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-False-True-guards1] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-True-True-guards1] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-False-False-guards2] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-False-True-guards1] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-True-False-guards1] 0.12s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-False-True-guards2] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-False-True-guards1] 0.12s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-True-False-guards3] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-True-True-guards3] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-True-True-guards3] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-True-False-guards1] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-False-True-guards2] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_limiter[1-True-False-guards0] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-False-True-guards0] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-True-False-guards2] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-True-False-guards2] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-False-False-guards1] 0.12s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-True-False-guards1] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-True-False-guards0] 0.12s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-True-False-guards0] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-False-False-guards1] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-True-False-guards2] 0.12s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-True-False-guards3] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-False-True-guards0] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-False-True-guards2] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-False-True-guards3] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-False-False-guards0] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-False-False-guards3] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-True-True-guards0] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-True-False-guards0] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-False-False-guards0] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-True-True-guards1] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-True-True-guards1] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-False-False-guards3] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-True-True-guards0] 0.12s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-False-True-guards0] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-True-True-guards2] 0.12s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-True-False-guards1] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-True-False-guards0] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-False-True-guards3] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-False-False-guards3] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-False-False-guards1] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-False-True-guards1] 0.12s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-False-True-guards1] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-True-False-guards1] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-True-False-guards3] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-False-True-guards3] 0.12s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-False-False-guards1] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-True-False-guards1] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-True-True-guards1] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-True-True-guards0] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-False-True-guards2] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-False-True-guards3] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-True-False-guards1] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-True-False-guards2] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-True-False-guards0] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-False-False-guards0] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-True-True-guards1] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-True-False-guards1] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-False-False-guards0] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-True-False-guards1] 0.12s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-True-True-guards2] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-True-False-guards0] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-True-False-guards3] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-False-False-guards1] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-True-False-guards3] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-False-False-guards2] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-False-False-guards2] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-False-True-guards2] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-True-True-guards2] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-True-False-guards1] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-True-True-guards0] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-False-True-guards3] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-True-False-guards0] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-False-True-guards0] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-False-False-guards0] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-False-True-guards0] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-False-False-guards2] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-False-True-guards0] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-False-True-guards1] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-True-False-guards3] 0.12s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-False-False-guards0] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-False-False-guards0] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-True-True-guards2] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-False-False-guards3] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-False-False-guards2] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-True-False-guards2] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-False-True-guards1] 0.12s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-True-False-guards0] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-False-False-guards1] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-False-True-guards2] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-False-True-guards2] 0.11s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-False-True-guards0] 0.11s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-False-False-guards2] 0.11s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-False-True-guards1] 0.11s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-False-False-guards2] 0.11s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-False-False-guards1] 0.11s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-True-False-guards0] 0.11s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-False-False-guards0] 0.11s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-False-True-guards0] 0.11s call xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[True-False-guards2] 0.11s call xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[False-True-guards1] 0.11s call xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[True-True-guards3] 0.11s call xbout/tests/test_region.py::TestRegion::test_region_core[True-False-guards3] 0.11s call xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[True-False-guards3] 0.11s call xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[True-False-guards1] 0.11s call xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[True-False-guards0] 0.11s call xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[False-True-guards3] 0.11s call xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[False-True-guards0] 0.11s call xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[True-True-guards0] 0.11s call xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[True-True-guards1] 0.11s call xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[False-True-guards2] 0.11s call xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[True-True-guards2] 0.10s call xbout/tests/test_against_collect.py::TestAccuracyAgainstOldCollect::test_single_file 0.10s call xbout/tests/test_load.py::TestOpen::test_restarts 0.10s call xbout/tests/test_load.py::TestOpen::test_squashed_file 0.10s call xbout/tests/test_load.py::TestOpen::test_squashed_doublenull_file[False-False] 0.09s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_remove_yboundaries[True-0-2] 0.09s call xbout/tests/test_region.py::TestRegion::test_region_xpoint[True-False-guards2] 0.08s call xbout/tests/test_boutdataset.py::TestSave::test_save_dtype[False-float64] 0.08s call xbout/tests/test_region.py::TestRegion::test_region_xpoint[True-True-guards3] 0.08s call xbout/tests/test_fastoutput.py::TestFastOutput::test_open_fastoutput 0.08s call xbout/tests/test_region.py::TestRegion::test_region_xpoint[True-False-guards1] 0.08s call xbout/tests/test_region.py::TestRegion::test_region_xpoint[True-False-guards3] 0.08s call xbout/tests/test_region.py::TestRegion::test_region_singlenull[True-False-guards2] 0.08s call xbout/tests/test_region.py::TestRegion::test_region_singlenull[True-False-guards3] 0.08s call xbout/tests/test_region.py::TestRegion::test_region_xpoint[False-True-guards1] 0.08s call xbout/tests/test_region.py::TestRegion::test_region_singlenull[False-True-guards0] 0.08s call xbout/tests/test_region.py::TestRegion::test_region_xpoint[False-True-guards2] 0.08s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_remove_yboundaries[True-0-0] 0.08s call xbout/tests/test_region.py::TestRegion::test_region_xpoint[False-True-guards0] 0.08s call xbout/tests/test_region.py::TestRegion::test_region_xpoint[True-True-guards2] 0.08s call xbout/tests/test_region.py::TestRegion::test_region_xpoint[True-True-guards1] 0.08s call xbout/tests/test_region.py::TestRegion::test_region_xpoint[True-True-guards0] 0.08s call xbout/tests/test_region.py::TestRegion::test_region_xpoint[False-True-guards3] 0.08s call xbout/tests/test_region.py::TestRegion::test_region_xpoint[True-False-guards0] 0.08s call xbout/tests/test_region.py::TestRegion::test_region_singlenull[True-True-guards1] 0.08s call xbout/tests/test_region.py::TestRegion::test_region_singlenull[False-True-guards1] 0.08s call xbout/tests/test_region.py::TestRegion::test_region_singlenull[True-False-guards1] 0.08s call xbout/tests/test_region.py::TestRegion::test_region_singlenull[True-False-guards0] 0.07s call xbout/tests/test_region.py::TestRegion::test_region_singlenull[True-True-guards3] 0.07s call xbout/tests/test_region.py::TestRegion::test_region_singlenull[True-True-guards2] 0.07s call xbout/tests/test_region.py::TestRegion::test_region_singlenull[False-True-guards3] 0.07s call xbout/tests/test_region.py::TestRegion::test_region_singlenull[True-True-guards0] 0.07s call xbout/tests/test_region.py::TestRegion::test_region_singlenull[False-True-guards2] 0.07s call xbout/tests/test_against_collect.py::TestAccuracyAgainstOldCollect::test_metadata 0.07s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_integrate_midpoints_salpha[CELL_CENTRE] 0.07s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_integrate_midpoints_slab 0.07s call xbout/tests/test_region.py::TestRegion::test_region_limiter[0-False-True-guards1] 0.07s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_interpolate_parallel_region_singlenull 0.07s call xbout/tests/test_region.py::TestRegion::test_region_limiter[0-False-True-guards2] 0.07s call xbout/tests/test_region.py::TestRegion::test_region_limiter[0-False-True-guards0] 0.07s call xbout/tests/test_region.py::TestRegion::test_region_limiter[1-True-False-guards1] 0.07s call xbout/tests/test_region.py::TestRegion::test_region_limiter[1-True-True-guards3] 0.07s call xbout/tests/test_region.py::TestRegion::test_region_limiter[1-True-True-guards1] 0.07s call xbout/tests/test_region.py::TestRegion::test_region_limiter[1-True-True-guards2] 0.07s call xbout/tests/test_region.py::TestRegion::test_region_core[False-True-guards1] 0.07s call xbout/tests/test_region.py::TestRegion::test_region_sol[False-True-guards0] 0.07s call xbout/tests/test_region.py::TestRegion::test_region_sol[True-False-guards1] 0.07s call xbout/tests/test_region.py::TestRegion::test_region_core[False-True-guards2] 0.07s call xbout/tests/test_region.py::TestRegion::test_region_limiter[0-True-True-guards0] 0.07s call xbout/tests/test_region.py::TestRegion::test_region_limiter[1-False-False-guards3] 0.07s call xbout/tests/test_region.py::TestRegion::test_region_limiter[0-True-True-guards1] 0.07s call xbout/tests/test_region.py::TestRegion::test_region_limiter[1-True-False-guards2] 0.07s call xbout/tests/test_region.py::TestRegion::test_region_sol[True-False-guards2] 0.07s call xbout/tests/test_region.py::TestRegion::test_region_limiter[0-True-False-guards0] 0.07s call xbout/tests/test_region.py::TestRegion::test_region_limiter[1-False-False-guards2] 0.07s call xbout/tests/test_region.py::TestRegion::test_region_limiter[1-False-True-guards0] 0.07s call xbout/tests/test_region.py::TestRegion::test_region_limiter[1-False-True-guards3] 0.07s call xbout/tests/test_region.py::TestRegion::test_region_limiter[0-True-False-guards2] 0.07s call xbout/tests/test_region.py::TestRegion::test_region_limiter[0-True-True-guards3] 0.07s call xbout/tests/test_region.py::TestRegion::test_region_core[False-True-guards3] 0.07s call xbout/tests/test_region.py::TestRegion::test_region_core[True-True-guards3] 0.07s call xbout/tests/test_region.py::TestRegion::test_region_limiter[1-True-False-guards3] 0.07s call xbout/tests/test_region.py::TestRegion::test_region_limiter[0-True-False-guards1] 0.07s call xbout/tests/test_region.py::TestRegion::test_region_limiter[0-True-False-guards3] 0.07s call xbout/tests/test_region.py::TestRegion::test_region_limiter[0-True-True-guards2] 0.07s call xbout/tests/test_region.py::TestRegion::test_region_limiter[1-True-True-guards0] 0.07s call xbout/tests/test_region.py::TestRegion::test_region_sol[True-True-guards1] 0.07s call xbout/tests/test_region.py::TestRegion::test_region_core[True-True-guards0] 0.07s call xbout/tests/test_region.py::TestRegion::test_region_limiter[0-False-True-guards3] 0.07s call xbout/tests/test_region.py::TestRegion::test_region_limiter[1-False-False-guards1] 0.07s call xbout/tests/test_region.py::TestRegion::test_region_limiter[1-False-True-guards1] 0.07s call xbout/tests/test_region.py::TestRegion::test_region_limiter[1-False-True-guards2] 0.07s call xbout/tests/test_region.py::TestRegion::test_region_sol[True-True-guards3] 0.07s call xbout/tests/test_region.py::TestRegion::test_region_core[True-False-guards2] 0.06s call xbout/tests/test_region.py::TestRegion::test_region_core[True-True-guards1] 0.06s call xbout/tests/test_region.py::TestRegion::test_region_limiter[1-False-False-guards0] 0.06s call xbout/tests/test_region.py::TestRegion::test_region_sol[True-False-guards3] 0.06s call xbout/tests/test_region.py::TestRegion::test_region_sol[True-True-guards0] 0.06s call xbout/tests/test_region.py::TestRegion::test_region_sol[True-False-guards0] 0.06s call xbout/tests/test_region.py::TestRegion::test_region_core[True-True-guards2] 0.06s call xbout/tests/test_region.py::TestRegion::test_region_core[True-False-guards0] 0.06s call xbout/tests/test_region.py::TestRegion::test_region_sol[False-True-guards3] 0.06s call xbout/tests/test_region.py::TestRegion::test_region_sol[False-True-guards1] 0.06s call xbout/tests/test_region.py::TestRegion::test_region_core[False-True-guards0] 0.06s call xbout/tests/test_region.py::TestRegion::test_region_sol[True-True-guards2] 0.06s call xbout/tests/test_region.py::TestRegion::test_region_sol[False-True-guards2] 0.06s call xbout/tests/test_region.py::TestRegion::test_region_core[True-False-guards1] 0.06s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_remove_yboundaries[True-2-0] 0.06s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_remove_yboundaries[True-2-2] 0.06s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_remove_yboundaries[0-2] 0.06s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_remove_yboundaries[0-0] 0.06s call xbout/tests/test_load.py::TestOpen::test_squashed_doublenull_file[False-True] 0.06s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_remove_yboundaries[2-0] 0.06s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_get_field_aligned 0.06s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_remove_yboundaries[2-2] 0.06s call xbout/tests/test_boutdataset.py::TestBoutDatasetIsXarrayDataset::test_concat 0.06s call xbout/tests/test_load.py::TestOpen::test_single_file 0.06s call xbout/tests/test_load.py::TestOpen::test_squashed_doublenull_file[True-False] 0.05s call xbout/tests/test_boutdataset.py::TestSave::test_save_dtype[True-float64] 0.05s call xbout/tests/test_boutdataset.py::TestSave::test_save_dtype[False-float32] 0.05s call xbout/tests/test_load.py::TestOpen::test_squashed_doublenull_file[True-True] 0.05s call xbout/tests/test_boutdataset.py::TestSave::test_save_dtype[True-float32] 0.04s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_integrate_midpoints_salpha[CELL_ZLOW] 0.04s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_integrate_midpoints_salpha[CELL_YLOW] 0.04s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_integrate_midpoints_salpha[CELL_XLOW] 0.04s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_interpolate_parallel_toroidal_points_list 0.04s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_interpolate_parallel 0.04s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_interpolate_parallel_toroidal_points 0.03s call xbout/tests/test_grid.py::TestOpenGrid::test_open_grid_chunks 0.03s call xbout/tests/test_grid.py::TestOpenGrid::test_open_grid_extra_dims 0.03s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-False-False-guards3] 0.03s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-False-False-guards2] 0.03s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-False-False-guards1] 0.03s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-False-False-guards0] 0.03s call xbout/tests/test_grid.py::TestOpenGrid::test_open_grid 0.03s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_interpolate_parallel_region_core 0.03s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_interpolate_parallel_region_sol 0.03s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_ddy 0.03s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel_all_variables_arg 0.03s call xbout/tests/test_load.py::test_set_fci_coords 0.03s call xbout/tests/test_grid.py::TestOpenGrid::test_open_grid_chunks_not_in_grid 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-False-True-guards1] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-False-False-guards2] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-True-True-guards3] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-False-False-guards0] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-True-True-guards2] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-True-True-guards3] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-False-False-guards1] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-False-False-guards0] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-True-True-guards3] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-False-False-guards2] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-False-True-guards2] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-False-True-guards0] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-False-False-guards3] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-True-False-guards1] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-False-True-guards3] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-True-False-guards2] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-True-False-guards3] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-True-True-guards0] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-True-False-guards3] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-False-True-guards2] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-True-True-guards0] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-True-False-guards0] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-False-True-guards1] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-False-False-guards1] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-False-True-guards3] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-True-True-guards2] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-True-True-guards1] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-True-True-guards1] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-False-True-guards1] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-True-False-guards0] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-False-True-guards3] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-False-True-guards0] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-True-False-guards1] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-True-False-guards2] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-True-False-guards2] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-True-True-guards2] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-True-True-guards1] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-True-False-guards3] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-True-False-guards0] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-False-False-guards3] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-True-False-guards1] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-False-True-guards2] 0.02s call xbout/tests/test_load.py::TestOpen::test_squashed_doublenull[False-False] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-True-True-guards0] 0.02s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_interpolate_parallel_region_core_change_n[7] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-False-True-guards0] 0.02s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_interpolate_parallel_region_core_change_n[18] 0.02s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_interpolate_parallel_sol 0.02s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_interpolate_parallel_region_core_change_n[2] 0.02s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_interpolate_parallel_region_core_change_n[3] 0.02s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_interpolate_to_cartesian 0.02s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned[False-9] 0.02s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned[False-8] 0.02s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_ddz 0.02s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_add_cartesian_coordinates 0.02s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_ddx 0.02s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned[False-7] 0.02s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned[False-6] 0.02s setup xbout/tests/test_load.py::test_set_fci_coords 0.01s call xbout/tests/test_grid.py::TestOpenGrid::test_open_grid_apply_geometry 0.01s call xbout/tests/test_load.py::TestPathHandling::test_glob_expansion_both[3-111] 0.01s call xbout/tests/test_load.py::TestPathHandling::test_glob_expansion_both[121-2] 0.01s call xbout/tests/test_load.py::TestStripMetadata::test_strip_metadata 0.01s call xbout/tests/test_load.py::TestPathHandling::test_glob_expansion_brackets[3-111] 0.01s call xbout/calc/tests/test_turbulence.py::TestRootMeanSquare::test_reduce_2d_dask 0.01s call xbout/tests/test_load.py::TestTrim::test_infer_boundaries_2d_parallelization_by_filenum[0-3-3-4-lower_boundaries9-upper_boundaries9] 0.01s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_from_field_aligned[8] 0.01s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_from_field_aligned_staggered[CELL_XLOW] 0.01s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned[True-7] 0.01s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned[True-6] 0.01s call xbout/tests/test_load.py::TestTrim::test_trim_timing_info[False] 0.01s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned[True-8] 0.01s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned[True-6] 0.01s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_to_field_aligned_staggered[CELL_YLOW] 0.01s call xbout/tests/test_load.py::TestOpen::test_squashed_doublenull[False-True] 0.01s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_to_field_aligned_staggered[CELL_ZLOW] 0.01s call xbout/tests/test_load.py::TestOpen::test_squashed_doublenull[True-False] 0.01s call xbout/tests/test_boutdataset.py::TestBoutDatasetIsXarrayDataset::test_isel 0.01s call xbout/tests/test_load.py::TestTrim::test_trim_timing_info[True] 0.01s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_from_field_aligned_staggered[CELL_YLOW] 0.01s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_from_field_aligned[6] 0.01s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_from_field_aligned[9] 0.01s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_from_field_aligned[7] 0.01s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_add_cartesian_coordinates 0.01s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_to_cartesian 0.01s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned[False-8] 0.01s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned[False-9] 0.01s call xbout/tests/test_load.py::TestOpen::test_squashed_doublenull[True-True] 0.01s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned_staggered[False-CELL_YLOW] 0.01s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned_staggered[True-CELL_ZLOW] 0.01s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_to_field_aligned_staggered[CELL_XLOW] 0.01s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_to_field_aligned_dask 0.01s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_from_field_aligned_staggered[CELL_ZLOW] 0.01s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned_staggered[False-CELL_XLOW] 0.01s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_to_field_aligned[8] 0.01s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned_staggered[True-CELL_YLOW] 0.01s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned_staggered[True-CELL_ZLOW] 0.01s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned[True-7] 0.01s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned_staggered[True-CELL_XLOW] 0.01s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned[False-6] 0.01s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_to_field_aligned[6] 0.01s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned_staggered[True-CELL_YLOW] 0.01s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned[False-7] 0.01s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned[True-9] 0.01s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned_dask[False] 0.01s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned_staggered[False-CELL_XLOW] 0.01s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned_dask[True] 0.01s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_to_field_aligned[9] 0.01s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned_staggered[False-CELL_ZLOW] 0.01s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned[True-9] 0.01s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_to_field_aligned[7] 0.01s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned_staggered[False-CELL_YLOW] 0.01s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned[True-8] 0.01s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned_staggered[False-CELL_ZLOW] 0.01s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned_staggered[True-CELL_XLOW] (1673 durations < 0.005s hidden. Use -vv to show these durations.) =========================== short test summary info ============================ FAILED xbout/tests/test_against_collect.py::TestAccuracyAgainstOldCollect::test_single_file FAILED xbout/tests/test_against_collect.py::TestAccuracyAgainstOldCollect::test_multiple_files_along_x FAILED xbout/tests/test_against_collect.py::TestAccuracyAgainstOldCollect::test_multiple_files_along_y FAILED xbout/tests/test_against_collect.py::TestAccuracyAgainstOldCollect::test_multiple_files_along_xy FAILED xbout/tests/test_against_collect.py::TestAccuracyAgainstOldCollect::test_metadata FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_dataset FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_remove_yboundaries[False-0-0] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_remove_yboundaries[False-0-2] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_remove_yboundaries[False-2-0] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_remove_yboundaries[False-2-2] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_remove_yboundaries[True-0-0] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_remove_yboundaries[True-0-2] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_remove_yboundaries[True-2-0] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_remove_yboundaries[True-2-2] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned[False-6] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned[False-7] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned[False-8] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned[False-9] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned[True-6] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned[True-7] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned[True-8] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned[True-9] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned_dask[False] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned_dask[True] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned[False-6] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned[False-7] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned[False-8] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned[False-9] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned[True-6] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned[True-7] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned[True-8] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned[True-9] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned_staggered[False-CELL_XLOW] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned_staggered[False-CELL_YLOW] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned_staggered[False-CELL_ZLOW] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned_staggered[True-CELL_XLOW] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned_staggered[True-CELL_YLOW] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned_staggered[True-CELL_ZLOW] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned_staggered[False-CELL_XLOW] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned_staggered[False-CELL_YLOW] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned_staggered[False-CELL_ZLOW] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned_staggered[True-CELL_XLOW] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned_staggered[True-CELL_YLOW] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned_staggered[True-CELL_ZLOW] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_interpolate_parallel_region_core FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_interpolate_parallel_region_core_change_n[2] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_interpolate_parallel_region_core_change_n[3] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_interpolate_parallel_region_core_change_n[7] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_interpolate_parallel_region_core_change_n[18] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_interpolate_parallel_region_sol FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_interpolate_parallel_region_singlenull FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_interpolate_parallel FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_interpolate_parallel_sol FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_interpolate_parallel_toroidal_points FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_interpolate_parallel_toroidal_points_list FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_interpolate_to_cartesian FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_add_cartesian_coordinates FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_ddx FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_ddy FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_ddz FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_derivatives_doublenull FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetIsXarrayDataset::test_concat FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetIsXarrayDataset::test_isel FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_get_field_aligned FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_remove_yboundaries[0-0] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_remove_yboundaries[0-2] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_remove_yboundaries[2-0] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_remove_yboundaries[2-2] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_to_field_aligned[6] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_to_field_aligned[7] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_to_field_aligned[8] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_to_field_aligned[9] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_to_field_aligned_dask FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_from_field_aligned[6] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_from_field_aligned[7] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_from_field_aligned[8] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_from_field_aligned[9] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_to_field_aligned_staggered[CELL_XLOW] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_to_field_aligned_staggered[CELL_YLOW] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_to_field_aligned_staggered[CELL_ZLOW] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_from_field_aligned_staggered[CELL_XLOW] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_from_field_aligned_staggered[CELL_YLOW] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_from_field_aligned_staggered[CELL_ZLOW] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-False-False-guards0] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-False-False-guards1] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-False-False-guards2] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-False-False-guards3] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-True-False-guards0] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-True-False-guards1] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-True-False-guards2] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-True-False-guards3] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-False-True-guards0] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-False-True-guards1] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-False-True-guards2] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-False-True-guards3] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-True-True-guards0] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-True-True-guards1] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-True-True-guards2] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-True-True-guards3] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-False-False-guards0] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-False-False-guards1] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-False-False-guards2] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-False-False-guards3] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-True-False-guards0] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-True-False-guards1] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-True-False-guards2] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-True-False-guards3] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-False-True-guards0] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-False-True-guards1] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-False-True-guards2] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-False-True-guards3] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-True-True-guards0] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-True-True-guards1] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-True-True-guards2] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-True-True-guards3] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel_all_variables_arg FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel_limiter FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_integrate_midpoints_slab FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_integrate_midpoints_salpha[CELL_CENTRE] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_integrate_midpoints_salpha[CELL_XLOW] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_integrate_midpoints_salpha[CELL_YLOW] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_integrate_midpoints_salpha[CELL_ZLOW] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_from_unstructured FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_from_unstructured_unstructured_output FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_to_cartesian FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_add_cartesian_coordinates FAILED xbout/tests/test_boutdataset.py::TestSave::test_save_all - ValueError:... FAILED xbout/tests/test_boutdataset.py::TestSave::test_reload_all[None] - Val... FAILED xbout/tests/test_boutdataset.py::TestSave::test_reload_all[toroidal] FAILED xbout/tests/test_boutdataset.py::TestSave::test_save_dtype[False-float64] FAILED xbout/tests/test_boutdataset.py::TestSave::test_save_dtype[False-float32] FAILED xbout/tests/test_boutdataset.py::TestSave::test_save_dtype[True-float64] FAILED xbout/tests/test_boutdataset.py::TestSave::test_save_dtype[True-float32] FAILED xbout/tests/test_boutdataset.py::TestSave::test_save_separate_variables FAILED xbout/tests/test_boutdataset.py::TestSave::test_reload_separate_variables[None] FAILED xbout/tests/test_boutdataset.py::TestSave::test_reload_separate_variables[toroidal] FAILED xbout/tests/test_boutdataset.py::TestSave::test_reload_separate_variables_time_split[None] FAILED xbout/tests/test_boutdataset.py::TestSave::test_reload_separate_variables_time_split[toroidal] FAILED xbout/tests/test_boutdataset.py::TestSaveRestart::test_to_restart[None] FAILED xbout/tests/test_boutdataset.py::TestSaveRestart::test_to_restart[1] FAILED xbout/tests/test_boutdataset.py::TestSaveRestart::test_to_restart_change_npe FAILED xbout/tests/test_boutdataset.py::TestSaveRestart::test_to_restart_change_npe_doublenull FAILED xbout/tests/test_boutdataset.py::TestSaveRestart::test_to_restart_change_npe_doublenull_expect_fail[npes0] FAILED xbout/tests/test_boutdataset.py::TestSaveRestart::test_to_restart_change_npe_doublenull_expect_fail[npes1] FAILED xbout/tests/test_load.py::TestOpen::test_single_file - ValueError: dim... FAILED xbout/tests/test_load.py::TestOpen::test_squashed_file - ValueError: d... FAILED xbout/tests/test_load.py::TestOpen::test_squashed_doublenull[False-False] FAILED xbout/tests/test_load.py::TestOpen::test_squashed_doublenull[False-True] FAILED xbout/tests/test_load.py::TestOpen::test_squashed_doublenull[True-False] FAILED xbout/tests/test_load.py::TestOpen::test_squashed_doublenull[True-True] FAILED xbout/tests/test_load.py::TestOpen::test_squashed_doublenull_file[False-False] FAILED xbout/tests/test_load.py::TestOpen::test_squashed_doublenull_file[False-True] FAILED xbout/tests/test_load.py::TestOpen::test_squashed_doublenull_file[True-False] FAILED xbout/tests/test_load.py::TestOpen::test_squashed_doublenull_file[True-True] FAILED xbout/tests/test_load.py::TestOpen::test_combine_along_x - ValueError:... FAILED xbout/tests/test_load.py::TestOpen::test_combine_along_y - ValueError:... FAILED xbout/tests/test_load.py::TestOpen::test_combine_along_xy[lengths0-False-False] FAILED xbout/tests/test_load.py::TestOpen::test_combine_along_xy[lengths0-True-False] FAILED xbout/tests/test_load.py::TestOpen::test_toroidal - ValueError: dimens... FAILED xbout/tests/test_load.py::TestOpen::test_salpha - ValueError: dimensio... FAILED xbout/tests/test_load.py::TestOpen::test_drop_vars - ValueError: dimen... FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-False-False-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-False-False-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-False-False-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-False-False-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-True-False-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-True-False-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-True-False-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-True-False-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-False-True-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-False-True-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-False-True-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-False-True-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-True-True-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-True-True-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-True-True-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-True-True-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-False-False-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-False-False-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-False-False-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-False-False-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-True-False-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-True-False-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-True-False-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-True-False-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-False-True-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-False-True-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-False-True-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-False-True-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-True-True-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-True-True-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-True-True-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-True-True-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-False-False-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-False-False-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-False-False-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-False-False-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-True-False-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-True-False-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-True-False-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-True-False-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-False-True-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-False-True-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-False-True-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-False-True-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-True-True-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-True-True-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-True-True-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-True-True-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-False-False-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-False-False-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-False-False-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-False-False-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-True-False-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-True-False-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-True-False-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-True-False-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-False-True-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-False-True-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-False-True-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-False-True-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-True-True-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-True-True-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-True-True-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-True-True-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-False-False-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-False-False-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-False-False-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-False-False-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-True-False-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-True-False-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-True-False-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-True-False-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-False-True-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-False-True-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-False-True-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-False-True-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-True-True-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-True-True-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-True-True-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-True-True-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-False-False-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-False-False-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-False-False-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-False-False-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-True-False-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-True-False-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-True-False-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-True-False-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-False-True-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-False-True-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-False-True-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-False-True-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-True-True-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-True-True-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-True-True-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-True-True-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-False-False-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-False-False-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-False-False-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-False-False-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-True-False-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-True-False-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-True-False-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-True-False-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-False-True-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-False-True-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-False-True-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-False-True-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-True-True-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-True-True-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-True-True-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-True-True-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-False-False-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-False-False-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-False-False-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-False-False-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-True-False-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-True-False-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-True-False-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-True-False-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-False-True-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-False-True-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-False-True-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-False-True-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-True-True-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-True-True-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-True-True-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-True-True-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-False-False-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-False-False-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-False-False-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-False-False-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-True-False-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-True-False-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-True-False-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-True-False-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-False-True-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-False-True-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-False-True-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-False-True-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-True-True-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-True-True-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-True-True-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-True-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_core[False-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_core[False-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_core[False-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_core[False-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_core[True-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_core[True-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_core[True-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_core[True-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_core[False-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_core[False-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_core[False-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_core[False-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_core[True-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_core[True-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_core[True-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_core[True-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_sol[False-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_sol[False-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_sol[False-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_sol[False-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_sol[True-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_sol[True-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_sol[True-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_sol[True-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_sol[False-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_sol[False-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_sol[False-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_sol[False-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_sol[True-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_sol[True-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_sol[True-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_sol[True-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[0-False-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[0-False-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[0-False-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[0-False-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[0-True-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[0-True-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[0-True-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[0-True-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[0-False-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[0-False-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[0-False-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[0-False-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[0-True-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[0-True-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[0-True-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[0-True-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[1-False-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[1-False-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[1-False-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[1-False-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[1-True-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[1-True-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[1-True-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[1-True-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[1-False-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[1-False-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[1-False-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[1-False-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[1-True-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[1-True-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[1-True-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[1-True-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_xpoint[False-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_xpoint[False-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_xpoint[False-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_xpoint[False-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_xpoint[True-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_xpoint[True-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_xpoint[True-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_xpoint[True-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_xpoint[False-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_xpoint[False-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_xpoint[False-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_xpoint[False-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_xpoint[True-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_xpoint[True-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_xpoint[True-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_xpoint[True-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_singlenull[False-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_singlenull[False-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_singlenull[False-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_singlenull[False-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_singlenull[True-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_singlenull[True-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_singlenull[True-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_singlenull[True-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_singlenull[False-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_singlenull[False-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_singlenull[False-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_singlenull[False-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_singlenull[True-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_singlenull[True-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_singlenull[True-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_singlenull[True-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[False-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[False-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[False-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[False-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[True-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[True-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[True-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[True-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[False-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[False-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[False-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[False-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[True-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[True-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[True-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[True-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-False-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-False-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-False-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-False-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-True-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-True-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-True-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-True-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-False-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-False-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-False-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-False-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-True-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-True-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-True-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-True-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-False-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-False-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-False-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-False-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-True-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-True-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-True-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-True-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-False-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-False-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-False-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-False-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-True-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-True-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-True-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-True-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-False-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-False-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-False-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-False-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-True-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-True-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-True-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-True-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-False-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-False-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-False-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-False-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-True-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-True-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-True-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-True-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-False-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-False-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-False-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-False-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-True-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-True-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-True-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-True-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-False-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-False-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-False-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-False-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-True-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-True-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-True-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-True-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-False-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-False-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-False-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-False-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-True-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-True-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-True-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-True-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-False-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-False-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-False-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-False-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-True-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-True-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-True-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-True-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-False-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-False-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-False-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-False-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-True-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-True-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-True-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-True-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-False-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-False-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-False-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-False-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-True-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-True-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-True-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-True-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-False-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-False-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-False-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-False-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-True-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-True-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-True-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-True-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-False-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-False-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-False-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-False-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-True-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-True-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-True-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-True-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-False-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-False-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-False-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-False-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-True-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-True-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-True-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-True-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-False-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-False-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-False-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-False-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-True-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-True-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-True-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-True-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-False-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-False-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-False-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-False-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-True-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-True-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-True-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-True-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-False-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-False-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-False-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-False-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-True-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-True-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-True-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-True-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-False-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-False-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-False-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-False-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-True-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-True-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-True-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-True-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-False-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-False-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-False-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-False-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-True-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-True-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-True-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-True-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-False-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-False-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-False-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-False-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-True-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-True-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-True-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-True-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-False-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-False-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-False-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-False-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-True-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-True-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-True-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-True-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-False-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-False-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-False-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-False-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-True-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-True-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-True-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-True-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-False-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-False-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-False-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-False-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-True-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-True-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-True-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-True-True-guards3] ERROR xbout/tests/test_animate.py::TestAnimate::test_animate2D - ValueError: ... ERROR xbout/tests/test_animate.py::TestAnimate::test_animate2D_controls_arg[controls0] ERROR xbout/tests/test_animate.py::TestAnimate::test_animate2D_controls_arg[controls1] ERROR xbout/tests/test_animate.py::TestAnimate::test_animate2D_controls_arg[controls2] ERROR xbout/tests/test_animate.py::TestAnimate::test_animate2D_controls_arg[controls3] ERROR xbout/tests/test_animate.py::TestAnimate::test_animate2D_controls_arg[controls4] ERROR xbout/tests/test_animate.py::TestAnimate::test_animate2D_controls_arg[controls5] ERROR xbout/tests/test_animate.py::TestAnimate::test_animate1D - ValueError: ... ERROR xbout/tests/test_animate.py::TestAnimate::test_animate1D_controls_arg[controls0] ERROR xbout/tests/test_animate.py::TestAnimate::test_animate1D_controls_arg[controls1] ERROR xbout/tests/test_animate.py::TestAnimate::test_animate1D_controls_arg[controls2] ERROR xbout/tests/test_animate.py::TestAnimate::test_animate1D_controls_arg[controls3] ERROR xbout/tests/test_animate.py::TestAnimate::test_animate1D_controls_arg[controls4] ERROR xbout/tests/test_animate.py::TestAnimate::test_animate1D_controls_arg[controls5] ERROR xbout/tests/test_animate.py::TestAnimate::test_animate_list - ValueErro... ERROR xbout/tests/test_animate.py::TestAnimate::test_animate_list_1d_default ERROR xbout/tests/test_animate.py::TestAnimate::test_animate_list_1d_multiline ERROR xbout/tests/test_animate.py::TestAnimate::test_animate_list_animate_over ERROR xbout/tests/test_animate.py::TestAnimate::test_animate_list_save_as - V... ERROR xbout/tests/test_animate.py::TestAnimate::test_animate_list_fps - Value... ERROR xbout/tests/test_animate.py::TestAnimate::test_animate_list_nrows - Val... ERROR xbout/tests/test_animate.py::TestAnimate::test_animate_list_ncols - Val... ERROR xbout/tests/test_animate.py::TestAnimate::test_animate_list_not_enough_nrowsncols ERROR xbout/tests/test_animate.py::TestAnimate::test_animate_list_subplots_adjust ERROR xbout/tests/test_animate.py::TestAnimate::test_animate_list_vmin - Valu... ERROR xbout/tests/test_animate.py::TestAnimate::test_animate_list_vmin_list ERROR xbout/tests/test_animate.py::TestAnimate::test_animate_list_vmax - Valu... ERROR xbout/tests/test_animate.py::TestAnimate::test_animate_list_vmax_list ERROR xbout/tests/test_animate.py::TestAnimate::test_animate_list_logscale - ... ERROR xbout/tests/test_animate.py::TestAnimate::test_animate_list_logscale_float ERROR xbout/tests/test_animate.py::TestAnimate::test_animate_list_logscale_list ERROR xbout/tests/test_animate.py::TestAnimate::test_animate_list_titles_list ERROR xbout/tests/test_animate.py::TestAnimate::test_animate_list_controls_arg[controls0] ERROR xbout/tests/test_animate.py::TestAnimate::test_animate_list_controls_arg[controls1] ERROR xbout/tests/test_animate.py::TestAnimate::test_animate_list_controls_arg[controls2] ERROR xbout/tests/test_animate.py::TestAnimate::test_animate_list_controls_arg[controls3] ERROR xbout/tests/test_animate.py::TestAnimate::test_animate_list_controls_arg[controls4] ERROR xbout/tests/test_animate.py::TestAnimate::test_animate_list_controls_arg[controls5] = 609 failed, 144 passed, 5 skipped, 1718 warnings, 38 errors in 170.68s (0:02:50) = RPM build errors: error: Bad exit status from /var/tmp/rpm-tmp.JlVA1Z (%check) Bad exit status from /var/tmp/rpm-tmp.JlVA1Z (%check) Finish: rpmbuild python-xbout-0.3.6-6.fc44.src.rpm Finish: build phase for python-xbout-0.3.6-6.fc44.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1756533364.710581/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names ERROR: Exception(/var/lib/copr-rpmbuild/results/python-xbout-0.3.6-6.fc44.src.rpm) Config(fedora-rawhide-x86_64) 3 minutes 23 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_failure=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot ERROR: Command failed: # /usr/bin/systemd-nspawn -q -M be353fc24bae44dd8cc08f289b66eb4e -D /var/lib/mock/fedora-rawhide-x86_64-1756533364.710581/root -a -u mockbuild --capability=cap_ipc_lock --rlimit=RLIMIT_NOFILE=10240 --capability=cap_ipc_lock --bind=/tmp/mock-resolv.k7odyx05:/etc/resolv.conf --bind=/dev/btrfs-control --bind=/dev/mapper/control --bind=/dev/fuse --bind=/dev/loop-control --bind=/dev/loop0 --bind=/dev/loop1 --bind=/dev/loop2 --bind=/dev/loop3 --bind=/dev/loop4 --bind=/dev/loop5 --bind=/dev/loop6 --bind=/dev/loop7 --bind=/dev/loop8 --bind=/dev/loop9 --bind=/dev/loop10 --bind=/dev/loop11 --console=pipe --setenv=TERM=vt100 --setenv=SHELL=/bin/bash --setenv=HOME=/builddir --setenv=HOSTNAME=mock --setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin '--setenv=PROMPT_COMMAND=printf "\033]0;\007"' '--setenv=PS1= \s-\v\$ ' --setenv=LANG=C.UTF-8 --resolv-conf=off bash --login -c '/usr/bin/rpmbuild -ba --noprep --target x86_64 /builddir/build/originals/python-xbout.spec' Copr build error: Build failed