Mock Version: 2.16 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/rubygem-bio.spec'], chrootPath='/var/lib/mock/centos-stream+epel-9-x86_64-1644251996.086903/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1001gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv._e_62f5h:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv._e_62f5h:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '460448c6e5ce4da3aa33ddf76cb9b259', '-D', '/var/lib/mock/centos-stream+epel-9-x86_64-1644251996.086903/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv._e_62f5h:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/rubygem-bio.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1644192000 Wrote: /builddir/build/SRPMS/rubygem-bio-2.0.3-1.el9.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/rubygem-bio.spec'], chrootPath='/var/lib/mock/centos-stream+epel-9-x86_64-1644251996.086903/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1001gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv._e_62f5h:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv._e_62f5h:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'c3f19228788a4d488882f0ce6f78f2a7', '-D', '/var/lib/mock/centos-stream+epel-9-x86_64-1644251996.086903/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv._e_62f5h:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/rubygem-bio.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1644192000 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.dhu4gC + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf bio-2.0.3 + /usr/bin/gem unpack /builddir/build/SOURCES/bio-2.0.3.gem Unpacked gem: '/builddir/build/BUILD/bio-2.0.3' + /usr/bin/gem spec /builddir/build/SOURCES/bio-2.0.3.gem --ruby + STATUS=0 + '[' 0 -ne 0 ']' + cd bio-2.0.3 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.OvaYrj + umask 022 + cd /builddir/build/BUILD + cd bio-2.0.3 + gem build ../bio-2.0.3.gemspec Successfully built RubyGem Name: bio Version: 2.0.3 File: bio-2.0.3.gem + mkdir -p ./usr/share/gems + CONFIGURE_ARGS='--with-cflags='\''-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'\'' --with-cxxflags='\''-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'\'' --with-ldflags='\''-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 '\'' ' + gem install -V --local --build-root . --force --document=ri,rdoc bio-2.0.3.gem WARNING: You build with buildroot. Build root: /builddir/build/BUILD/bio-2.0.3 Bin dir: /builddir/build/BUILD/bio-2.0.3/usr/bin Gem home: /builddir/build/BUILD/bio-2.0.3/usr/share/gems Plugins dir: /builddir/build/BUILD/bio-2.0.3/usr/share/gems/plugins /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/.travis.yml /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/BSDL /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/COPYING /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/COPYING.ja /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/ChangeLog /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/GPL /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/Gemfile /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/KNOWN_ISSUES.rdoc /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/LEGAL /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/LGPL /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/README.rdoc /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/README_DEV.rdoc /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/RELEASE_NOTES.rdoc /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/Rakefile /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/appveyor.yml /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/bioruby.gemspec /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/bioruby.gemspec.erb /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/doc/ChangeLog-1.4.3 /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/doc/ChangeLog-1.5.0 /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/doc/ChangeLog-before-1.3.1 /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/doc/ChangeLog-before-1.4.2 /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/doc/Changes-0.7.rd /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/doc/Changes-1.3.rdoc /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/doc/RELEASE_NOTES-1.4.0.rdoc /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/doc/RELEASE_NOTES-1.4.1.rdoc /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/doc/RELEASE_NOTES-1.4.2.rdoc /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/doc/RELEASE_NOTES-1.4.3.rdoc /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/doc/RELEASE_NOTES-1.5.0.rdoc /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/doc/Tutorial.rd /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/doc/Tutorial.rd.html /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/doc/Tutorial.rd.ja /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/doc/Tutorial.rd.ja.html /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/doc/bioruby.css /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/etc/bioinformatics/seqdatabase.ini /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/gemfiles/Gemfile.travis-jruby1.8 /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/gemfiles/Gemfile.travis-jruby1.9 /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/gemfiles/Gemfile.travis-rbx /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/gemfiles/Gemfile.travis-ruby1.8 /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/gemfiles/Gemfile.travis-ruby1.9 /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/gemfiles/Gemfile.windows /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/gemfiles/modify-Gemfile.rb /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/gemfiles/prepare-gemspec.rb /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/lib/bio.rb /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/lib/bio/alignment.rb /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/lib/bio/appl/bl2seq/report.rb /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/lib/bio/appl/blast.rb /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/lib/bio/appl/blast/format0.rb /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/lib/bio/appl/blast/format8.rb /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/lib/bio/appl/blast/genomenet.rb /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/lib/bio/appl/blast/ncbioptions.rb /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/lib/bio/appl/blast/remote.rb /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/lib/bio/appl/blast/report.rb /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/lib/bio/appl/blast/rexml.rb /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/lib/bio/appl/blast/rpsblast.rb /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/lib/bio/appl/blast/wublast.rb /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/lib/bio/appl/blat/report.rb /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/lib/bio/appl/clustalw.rb /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/lib/bio/appl/clustalw/report.rb /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/lib/bio/appl/emboss.rb /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/lib/bio/appl/fasta.rb /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/lib/bio/appl/fasta/format10.rb /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/lib/bio/appl/gcg/msf.rb /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/lib/bio/appl/gcg/seq.rb /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/lib/bio/appl/genscan/report.rb /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/lib/bio/appl/hmmer.rb /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/lib/bio/appl/hmmer/report.rb /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/lib/bio/appl/iprscan/report.rb /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/lib/bio/appl/mafft.rb /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/lib/bio/appl/mafft/report.rb /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/lib/bio/appl/meme/mast.rb /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/lib/bio/appl/meme/mast/report.rb /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/lib/bio/appl/meme/motif.rb /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/lib/bio/appl/muscle.rb /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/lib/bio/appl/paml/baseml.rb /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/lib/bio/appl/paml/baseml/report.rb /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/lib/bio/appl/paml/codeml.rb /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/lib/bio/appl/paml/codeml/rates.rb /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/lib/bio/appl/paml/codeml/report.rb /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/lib/bio/appl/paml/common.rb /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/lib/bio/appl/paml/common_report.rb /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/lib/bio/appl/paml/yn00.rb /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/lib/bio/appl/paml/yn00/report.rb /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/lib/bio/appl/phylip/alignment.rb /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/lib/bio/appl/phylip/distance_matrix.rb /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/lib/bio/appl/probcons.rb /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/lib/bio/appl/psort.rb /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/lib/bio/appl/psort/report.rb 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/builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/test/unit/bio/util/test_restriction_enzyme.rb /builddir/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3/test/unit/bio/util/test_sirna.rb Successfully installed bio-2.0.3 Parsing documentation for bio-2.0.3 Parsing sources... 0% [ 1/207] KNOWN_ISSUES.rdoc 0% [ 2/207] README.rdoc 1% [ 3/207] README_DEV.rdoc 1% [ 4/207] RELEASE_NOTES.rdoc 2% [ 5/207] doc/Changes-1.3.rdoc 2% [ 6/207] doc/RELEASE_NOTES-1.4.0.rdoc 3% [ 7/207] doc/RELEASE_NOTES-1.4.1.rdoc 3% [ 8/207] doc/RELEASE_NOTES-1.4.2.rdoc 4% [ 9/207] doc/RELEASE_NOTES-1.4.3.rdoc 4% [10/207] doc/RELEASE_NOTES-1.5.0.rdoc 5% [11/207] lib/bio.rb 5% [12/207] lib/bio/alignment.rb 6% [13/207] lib/bio/appl/bl2seq/report.rb 6% [14/207] lib/bio/appl/blast.rb 7% [15/207] lib/bio/appl/blast/format0.rb 7% [16/207] lib/bio/appl/blast/format8.rb 8% [17/207] lib/bio/appl/blast/genomenet.rb 8% [18/207] lib/bio/appl/blast/ncbioptions.rb 9% [19/207] lib/bio/appl/blast/remote.rb 9% [20/207] 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lib/bio/db/lasergene.rb 56% [117/207] lib/bio/db/litdb.rb 57% [118/207] lib/bio/db/medline.rb 57% [119/207] lib/bio/db/nbrf.rb 57% [120/207] lib/bio/db/newick.rb 58% [121/207] lib/bio/db/nexus.rb 58% [122/207] lib/bio/db/pdb.rb 59% [123/207] lib/bio/db/pdb/atom.rb 59% [124/207] lib/bio/db/pdb/chain.rb 60% [125/207] lib/bio/db/pdb/chemicalcomponent.rb 60% [126/207] lib/bio/db/pdb/model.rb 61% [127/207] lib/bio/db/pdb/pdb.rb 61% [128/207] lib/bio/db/pdb/residue.rb 62% [129/207] lib/bio/db/pdb/utils.rb 62% [130/207] lib/bio/db/prosite.rb 63% [131/207] lib/bio/db/rebase.rb 63% [132/207] lib/bio/db/sanger_chromatogram/abif.rb 64% [133/207] lib/bio/db/sanger_chromatogram/chromatogram.rb 64% [134/207] lib/bio/db/sanger_chromatogram/chromatogram_to_biosequence.rb 65% [135/207] lib/bio/db/sanger_chromatogram/scf.rb 65% [136/207] lib/bio/db/soft.rb 66% [137/207] lib/bio/db/transfac.rb 66% [138/207] lib/bio/feature.rb 67% [139/207] lib/bio/io/das.rb 67% [140/207] lib/bio/io/fastacmd.rb 68% 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lib/bio/sequence/generic.rb 80% [167/207] lib/bio/sequence/na.rb 81% [168/207] lib/bio/sequence/quality_score.rb 81% [169/207] lib/bio/sequence/sequence_masker.rb 82% [170/207] lib/bio/tree.rb 82% [171/207] lib/bio/tree/output.rb 83% [172/207] lib/bio/util/color_scheme.rb 83% [173/207] lib/bio/util/color_scheme/buried.rb 84% [174/207] lib/bio/util/color_scheme/helix.rb 84% [175/207] lib/bio/util/color_scheme/hydropathy.rb 85% [176/207] lib/bio/util/color_scheme/nucleotide.rb 85% [177/207] lib/bio/util/color_scheme/strand.rb 85% [178/207] lib/bio/util/color_scheme/taylor.rb 86% [179/207] lib/bio/util/color_scheme/turn.rb 86% [180/207] lib/bio/util/color_scheme/zappo.rb 87% [181/207] lib/bio/util/contingency_table.rb 87% [182/207] lib/bio/util/restriction_enzyme.rb 88% [183/207] lib/bio/util/restriction_enzyme/analysis.rb 88% [184/207] lib/bio/util/restriction_enzyme/analysis_basic.rb 89% [185/207] lib/bio/util/restriction_enzyme/cut_symbol.rb 89% [186/207] lib/bio/util/restriction_enzyme/dense_int_array.rb 90% [187/207] lib/bio/util/restriction_enzyme/double_stranded.rb 90% [188/207] lib/bio/util/restriction_enzyme/double_stranded/aligned_strands.rb 91% [189/207] lib/bio/util/restriction_enzyme/double_stranded/cut_location_pair.rb 91% [190/207] lib/bio/util/restriction_enzyme/double_stranded/cut_location_pair_in_enzyme_notation.rb 92% [191/207] lib/bio/util/restriction_enzyme/double_stranded/cut_locations.rb 92% [192/207] lib/bio/util/restriction_enzyme/double_stranded/cut_locations_in_enzyme_notation.rb 93% [193/207] lib/bio/util/restriction_enzyme/range/cut_range.rb 93% [194/207] lib/bio/util/restriction_enzyme/range/cut_ranges.rb 94% [195/207] lib/bio/util/restriction_enzyme/range/horizontal_cut_range.rb 94% [196/207] lib/bio/util/restriction_enzyme/range/sequence_range.rb 95% [197/207] lib/bio/util/restriction_enzyme/range/sequence_range/calculated_cuts.rb 95% [198/207] lib/bio/util/restriction_enzyme/range/sequence_range/fragment.rb 96% [199/207] lib/bio/util/restriction_enzyme/range/sequence_range/fragments.rb 96% [200/207] lib/bio/util/restriction_enzyme/range/vertical_cut_range.rb 97% [201/207] lib/bio/util/restriction_enzyme/single_strand.rb 97% [202/207] lib/bio/util/restriction_enzyme/single_strand/cut_locations_in_enzyme_notation.rb 98% [203/207] lib/bio/util/restriction_enzyme/single_strand_complement.rb 98% [204/207] lib/bio/util/restriction_enzyme/sorted_num_array.rb 99% [205/207] lib/bio/util/restriction_enzyme/string_formatting.rb 99% [206/207] lib/bio/util/sirna.rb 100% [207/207] lib/bio/version.rb Installing ri documentation for bio-2.0.3 Installing darkfish documentation for bio-2.0.3 Done installing documentation for bio after 13 seconds 1 gem installed + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.GAYZv0 + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/rubygem-bio-2.0.3-1.el9.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/rubygem-bio-2.0.3-1.el9.x86_64 ++ dirname /builddir/build/BUILDROOT/rubygem-bio-2.0.3-1.el9.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/rubygem-bio-2.0.3-1.el9.x86_64 + cd bio-2.0.3 + mkdir -p /builddir/build/BUILDROOT/rubygem-bio-2.0.3-1.el9.x86_64/usr/share/gems + cp -a ./usr/share/gems/build_info ./usr/share/gems/cache ./usr/share/gems/doc ./usr/share/gems/extensions ./usr/share/gems/gems ./usr/share/gems/plugins ./usr/share/gems/specifications /builddir/build/BUILDROOT/rubygem-bio-2.0.3-1.el9.x86_64/usr/share/gems/ + /usr/lib/rpm/find-debuginfo.sh -j2 --strict-build-id -m -i --build-id-seed 2.0.3-1.el9 --unique-debug-suffix -2.0.3-1.el9.x86_64 --unique-debug-src-base rubygem-bio-2.0.3-1.el9.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/bio-2.0.3 + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs *** WARNING: ./usr/share/gems/gems/bio-2.0.3/test/data/soft/GSE3457_family_partial.soft is executable but has no shebang, removing executable bit *** WARNING: ./usr/share/gems/gems/bio-2.0.3/test/data/soft/GDS100_partial.soft is executable but has no shebang, removing executable bit mangling shebang in /usr/share/gems/gems/bio-2.0.3/test/data/command/echoarg2.sh from /bin/sh to #!/usr/bin/sh *** WARNING: Cannot read the first line from ./usr/share/gems/gems/bio-2.0.3/test/data/command/echoarg2.bat, removing executable bit mangling shebang in /usr/share/gems/gems/bio-2.0.3/sample/vs-genes.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/bio-2.0.3/sample/tfastx2tab.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/bio-2.0.3/sample/ssearch2tab.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/bio-2.0.3/sample/pmsearch.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/bio-2.0.3/sample/pmfetch.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/bio-2.0.3/sample/na2aa.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/bio-2.0.3/sample/gt2fasta.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/bio-2.0.3/sample/goslim.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/bio-2.0.3/sample/genome2tab.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/bio-2.0.3/sample/genome2rb.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/bio-2.0.3/sample/genes2tab.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/bio-2.0.3/sample/genes2pep.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/bio-2.0.3/sample/genes2nuc.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/bio-2.0.3/sample/gbtab2mysql.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/bio-2.0.3/sample/gb2tab.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/bio-2.0.3/sample/gb2fasta.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/bio-2.0.3/sample/fsplit.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/bio-2.0.3/sample/fastasort.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/bio-2.0.3/sample/fastagrep.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/bio-2.0.3/sample/fasta2tab.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/bio-2.0.3/sample/enzymes.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/bio-2.0.3/sample/biofetch.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/bio-2.0.3/sample/any2fasta.rb from /usr/bin/env ruby to #!/usr/bin/ruby Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.cjoRjj + umask 022 + cd /builddir/build/BUILD ~/build/BUILD/bio-2.0.3/usr/share/gems/gems/bio-2.0.3 ~/build/BUILD/bio-2.0.3 ~/build/BUILD/bio-2.0.3 + cd bio-2.0.3 + pushd ./usr/share/gems/gems/bio-2.0.3 + popd + RPM_EC=0 ++ jobs -p + exit 0 Processing files: rubygem-bio-2.0.3-1.el9.noarch Provides: rubygem(bio) = 2.0.3 rubygem-bio = 2.0.3-1.el9 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/ruby ruby(rubygems) Processing files: rubygem-bio-doc-2.0.3-1.el9.noarch Provides: rubygem-bio-doc = 2.0.3-1.el9 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/sh Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/rubygem-bio-2.0.3-1.el9.x86_64 Wrote: /builddir/build/RPMS/rubygem-bio-2.0.3-1.el9.noarch.rpm Wrote: /builddir/build/RPMS/rubygem-bio-doc-2.0.3-1.el9.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.Y7GrtQ + umask 022 + cd /builddir/build/BUILD + cd bio-2.0.3 + /usr/bin/rm -rf /builddir/build/BUILDROOT/rubygem-bio-2.0.3-1.el9.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Child return code was: 0