module Bio::Alignment::FactoryTemplate::WrapOutputStdout

mix-in module

Private Instance Methods

_query_local(fn_in, opt, data_stdin = nil) click to toggle source

Performs alignment by specified filenames

     # File lib/bio/alignment.rb
2387 def _query_local(fn_in, opt, data_stdin = nil)
2388   opt = _generate_options(fn_in, nil, opt)
2389   exec_local(opt, data_stdin)
2390   @output = @data_stdout
2391   @report = self.class::DEFAULT_PARSER.new(@output)
2392   @report
2393 end