class Bio::Alignment::FactoryTemplate::FileInStdoutOut

Template class for alignment application factory. The program needs: input: file (cannot accept stdin), format = fasta format output: stdout (parser should be specified by DEFAULT_PARSER)

Private Instance Methods

_option_input_stdin() click to toggle source

generates options specifying that input is taken from stdin. returns an array of string

     # File lib/bio/alignment.rb
2426 def _option_input_stdin
2427   raise 'input is always a file'
2428 end