class Bio::Alignment::FactoryTemplate::StdinInFileOut
Template class for alignment application factory. The program needs: input: stdin or file, format = fasta format output: file (parser should be specified by DEFAULT_PARSER)
Private Instance Methods
_option_output_stdout()
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generates options specifying output to stdout. returns an array of string
# File lib/bio/alignment.rb 2442 def _option_output_stdout 2443 raise 'output is always a file' 2444 end