module Bio::Alignment::FactoryTemplate::WrapOutputTempfile
mix-in module
Private Instance Methods
_query_local(fn_in, opt, data_stdin = nil)
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Performs alignment
# File lib/bio/alignment.rb 2400 def _query_local(fn_in, opt, data_stdin = nil) 2401 begin 2402 tf_out = _prepare_tempfile() 2403 opt = _generate_options(fn_in, tf_out.path, opt) 2404 exec_local(opt, data_stdin) 2405 tf_out.open 2406 @output = tf_out.read 2407 ensure 2408 tf_out.close(true) if tf_out 2409 end 2410 @report = self.class::DEFAULT_PARSER.new(@output) 2411 @report 2412 end