class SequenceServer::BLAST::HSP::BLASTN
Public Instance Methods
nqseq()
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BLASTN
is a bit weird in that, no matter which direction the query sequence aligned in, qstart is taken as alignment start coordinate for query.
NOTE:
Because BLAST reverses the qstart and qend for BLASTN?
# File lib/sequenceserver/blast/hsp.rb, line 219 def nqseq qstart end
nsseq()
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BLASTN
is a bit weird in that, no matter which direction the subject sequence aligned in, sstart is taken as alignment start coordinate for subject.
NOTE:
Because BLAST reverses the sstart and send for BLASTN?
# File lib/sequenceserver/blast/hsp.rb, line 229 def nsseq sstart end
stats()
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Calls superclass method
# File lib/sequenceserver/blast/hsp.rb, line 208 def stats super.update('Strand' => "#{qframe > 0 ? '+' : '-'}/#{sframe > 0 ? '+' : '-'}") end