class Bio::Blat::Report::Hit
Public Instance Methods
percentage_covered()
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# File lib/bio/BIOExtensions.rb, line 51 def percentage_covered ( match + mismatch ) * 100.0 / query_len.to_f end
wheat_arm()
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# File lib/bio/BIOExtensions.rb, line 47 def wheat_arm wheat_chr_arm[2] end
wheat_chr()
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# File lib/bio/BIOExtensions.rb, line 34 def wheat_chr wheat_chr_arm[0,2] end
wheat_chr_arm()
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Function to parse stuff like: IWGSC_CSS_1AL_scaff_110
# File lib/bio/BIOExtensions.rb, line 29 def wheat_chr_arm @wheat_chr_arm if @wheat_chr_arm @wheat_chr_arm = target_id.split('_')[2] end
wheat_chr_group()
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# File lib/bio/BIOExtensions.rb, line 38 def wheat_chr_group raise Exception.new(), "No wheat group for #{target_id} #{self.inspect}" unless wheat_chr wheat_chr_arm[0] end
wheat_genome()
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# File lib/bio/BIOExtensions.rb, line 43 def wheat_genome wheat_chr_arm[1] end