Table of Contents - npsearch-2.1.8 Documentation
Classes and Modules
- NpSearch
- NpSearch::ArgumentsValidators
- NpSearch::Logger
- NpSearch::Output
- NpSearch::ScoreSequence
- NpSearch::Sequence
- NpSearch::Signalp
- Pool
Methods
- ::acidic_spacers — NpSearch::ScoreSequence
- ::analyse_sequence — NpSearch::Signalp
- ::assert_binaries — NpSearch::ArgumentsValidators
- ::assert_file_present — NpSearch::ArgumentsValidators
- ::assert_input_file_not_empty — NpSearch::ArgumentsValidators
- ::assert_input_file_probably_fasta — NpSearch::ArgumentsValidators
- ::assert_input_sequence — NpSearch::ArgumentsValidators
- ::check_num_threads — NpSearch::ArgumentsValidators
- ::command? — NpSearch::ArgumentsValidators
- ::count_c_terminal_glycines — NpSearch::ScoreSequence
- ::count_dibasic_np_clv — NpSearch::ScoreSequence
- ::count_mono_basic_np_clv — NpSearch::ScoreSequence
- ::count_np_cleavage_sites — NpSearch::ScoreSequence
- ::create_temp_directory — NpSearch
- ::extract_orf — NpSearch
- ::guess_sequence_type — NpSearch::ArgumentsValidators
- ::init — NpSearch
- ::initialise_seqs — NpSearch
- ::initialise_thread_pool — NpSearch
- ::iterate_input_file — NpSearch
- ::new — NpSearch::Logger
- ::new — Pool
- ::new — NpSearch::Sequence
- ::np_similarity — NpSearch::ScoreSequence
- ::remove_temp_dir — NpSearch
- ::run — NpSearch::ArgumentsValidators
- ::run — NpSearch::ScoreSequence
- ::run — NpSearch
- ::run_cdhit — NpSearch::ScoreSequence
- ::run_signalp — NpSearch::Signalp
- ::setup_analysis — NpSearch::Signalp
- ::split_into_potential_neuropeptides — NpSearch::ScoreSequence
- ::to_fasta — NpSearch::Output
- ::to_html — NpSearch::Output
- ::type_of_sequences — NpSearch::ArgumentsValidators
- ::write_potential_peptides_to_tempfile — NpSearch::ScoreSequence
- #format_seq_for_html — NpSearch::Sequence
- #schedule — Pool
- #shutdown — Pool