class OboParser::OboParser
Attributes
terms[RW]
typedefs[RW]
Public Class Methods
new()
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# File lib/obo_parser.rb, line 18 def initialize @terms = [] @typedefs = [] true end
Public Instance Methods
id_hash()
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Returns a hash of 'id:012345' => 'term label'
@return [Hash] a hash of {id => string} for the file
# File lib/obo_parser.rb, line 39 def id_hash @terms.inject({}) {|sum, t| sum.update(t.id.value => t.name.value)} end
id_index()
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Returns a hash of 'id:012345' => Term
@return [Hash] a hash of {id => Term} for the file
# File lib/obo_parser.rb, line 46 def id_index @terms.inject({}) {|sum, t| sum.update(t.id.value => t)} end
term_hash()
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Warning! This assumes terms are unique, they are NOT required to be so in an OBO file. Ignores hash colisions!! @return [Hash]
(String => String) (name => id)
# File lib/obo_parser.rb, line 32 def term_hash @terms.inject({}) {|sum, t| sum.update(t.name.value => t.id.value)} end
term_strings() { |Array of Strings| ... }
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# File lib/obo_parser.rb, line 24 def term_strings # :yields: Array of Strings @terms.collect{|t| t.name.value}.sort end