class Object
Constants
- CHROMOSOMES
- DO_COMPUTE_GWA
- DO_COMPUTE_KINSHIP
- GEMMA_ARGS
- GEMMA_ARGS_HASH
- GEMMA_COMMAND
Check gemma version
- GEMMA_INFO
- GEMMA_K_BANNER
- GEMMA_K_VERSION
—- Start banner
- GEMMA_V_MAJOR
These are used for testing compatibility with the gemma tool
- GEMMA_V_MINOR
- HASH
- LOCO
- OUTPUT
—- Output handlers
- PARALLEL_INFO
- USAGE
gemma-wrapper
- Author
-
Pjotr Prins
- License
-
GPL3
Copyright (C) 2017-2021 Pjotr Prins <pjotr.prins@thebird.nl>
- VERSION_FILENAME
Public Instance Methods
get_chromosomes(annofn)
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Fetch chromosomes
# File bin/gemma-wrapper, line 203 def get_chromosomes annofn h = {} File.open(annofn,"r").each_line do | line | chr = line.split(/\s+/)[2] h[chr] = true end h.map { |k,v| k } end