Table of Contents - bio-ucsc-api-0.6.5 Documentation
Pages
- ChangeLog
- LICENSE
-
README
- bio-ucsc-api version 0.6.5
- Citation
- Install
- Web Service
- Features
- Supported databases (genome assemblies)
- Implementation
- Change Log
- How to Use
- Basics
- Sample Codes
- Notes of Exceptions in Table Support
- Details in “with_interval”
- Table Associations
- Manual definition of table associations
- Automatic definition of table associations using the all.joiner schema file
- Copyright
- bio-ucsc-api version 0.6.5
- 00README
Classes and Modules
-
Bio
- rmsk.rb
- rmsk.rb
- rmsk.rb
- rmsk.rb
- rmsk.rb
- rmsk.rb
- rmsk.rb
- bytequeue.rb
- twobit.rb
- rmsk.rb
- rmsk.rb
- gi.rb
- hg18/chainanocar1.rb
- hg18/chainbostau4.rb
- hg18/chainbraflo1.rb
- hg18/chaincaljac1.rb
- hg18/chaincanfam2.rb
- hg18/chaincavpor3.rb
- hg18/chaindanrer5.rb
- hg18/chainequcab1
- hg18/chainfelcat3.rb
- hg18/chainfr2.rb
- hg18/chaingalgal3.rb
- hg18/chaingasacu1.rb
- hg18/chainmm9.rb
- hg18/chainornana1.rb
- hg18/chainornana1.rb
- hg18/chainorylat2.rb
- hg18/chainpantro2
- hg18/chainpetmar1.rb
- hg18/chainponabe2.rb
- hg18/chainrhemac2
- hg18/chainrn4.rb
- hg18/chainself.rb
- hg18/chainstrpur2.rb
- hg18/chaintaegut1
- hg18/chaintetnig2.rb
- hg18/chainxentro2.rb
- hg18/gap.rb
- hg18/gold.rb
- hg18/intronest.rb
- hg18/rmsk.rb
- hg18/rmskrm327.rb
- chainbraflo1.rb
- chainbraflo1link.rb
- chaincanfam2.rb
- chainbraflo1link.rb
- rmsk.rb
- rmsk.rb
- rmsk.rb
- reference.rb
- chaincanfam2.rb
- chainbraflo1link.rb
- rmsk.rb
- chaincanfam2.rb
- chainbraflo1link.rb
- rmsk.rb
- table_class_detector.rb
- supported table categories and arguments/defaults
- rmsk.rb
- UCSCBin
- Bio::GenomicInterval
- Bio::Ucsc
- Bio::Ucsc::AilMel1
- Bio::Ucsc::AilMel1::DBConnection
- Bio::Ucsc::AnoCar2
- Bio::Ucsc::AnoCar2::DBConnection
- Bio::Ucsc::AnoGam1
- Bio::Ucsc::AnoGam1::ChainDm3
- Bio::Ucsc::AnoGam1::ChainDm3Link
- Bio::Ucsc::AnoGam1::DBConnection
- Bio::Ucsc::AnoGam1::Est
- Bio::Ucsc::AnoGam1::Gap
- Bio::Ucsc::AnoGam1::Gold
- Bio::Ucsc::AnoGam1::IntronEst
- Bio::Ucsc::AnoGam1::Mrna
- Bio::Ucsc::AnoGam1::Rmsk
- Bio::Ucsc::ApiMel2
- Bio::Ucsc::ApiMel2::ChainDm2
- Bio::Ucsc::ApiMel2::ChainDm2Link
- Bio::Ucsc::ApiMel2::DBConnection
- Bio::Ucsc::AplCal1
- Bio::Ucsc::AplCal1::DBConnection
- Bio::Ucsc::BosTau4
- Bio::Ucsc::BosTau4::DBConnection
- Bio::Ucsc::BraFlo1
- Bio::Ucsc::BraFlo1::ChainGalGal3
- Bio::Ucsc::BraFlo1::ChainGalGal3Link
- Bio::Ucsc::BraFlo1::ChainHg18
- Bio::Ucsc::BraFlo1::ChainHg18Link
- Bio::Ucsc::BraFlo1::ChainMm9
- Bio::Ucsc::BraFlo1::ChainMm9Link
- Bio::Ucsc::BraFlo1::ChainPetMar1
- Bio::Ucsc::BraFlo1::ChainPetMar1Link
- Bio::Ucsc::BraFlo1::DBConnection
- Bio::Ucsc::BraFlo1::Gap
- Bio::Ucsc::BraFlo1::Gold
- Bio::Ucsc::ByteQueue
- Bio::Ucsc::CaeJap1
- Bio::Ucsc::CaeJap1::ChainCe6
- Bio::Ucsc::CaeJap1::ChainCe6Link
- Bio::Ucsc::CaeJap1::DBConnection
- Bio::Ucsc::CaeJap1::Gap
- Bio::Ucsc::CaeJap1::Gold
- Bio::Ucsc::CaePb2
- Bio::Ucsc::CaePb2::ChainCe6
- Bio::Ucsc::CaePb2::ChainCe6Link
- Bio::Ucsc::CaePb2::DBConnection
- Bio::Ucsc::CaePb2::Gap
- Bio::Ucsc::CaePb2::Gold
- Bio::Ucsc::CaeRem3
- Bio::Ucsc::CaeRem3::ChainCe6
- Bio::Ucsc::CaeRem3::ChainCe6Link
- Bio::Ucsc::CaeRem3::DBConnection
- Bio::Ucsc::CaeRem3::Gap
- Bio::Ucsc::CaeRem3::Gold
- Bio::Ucsc::CalJac3
- Bio::Ucsc::CalJac3::DBConnection
- Bio::Ucsc::CanFam2
- Bio::Ucsc::CanFam2::ChainBosTau4
- Bio::Ucsc::CanFam2::ChainBosTau4Link
- Bio::Ucsc::CanFam2::ChainMm9
- Bio::Ucsc::CanFam2::ChainMm9Link
- Bio::Ucsc::CanFam2::ChainRn4
- Bio::Ucsc::CanFam2::ChainRn4Link
- Bio::Ucsc::CanFam2::ChainSelf
- Bio::Ucsc::CanFam2::ChainSelfLink
- Bio::Ucsc::CanFam2::DBConnection
- Bio::Ucsc::CanFam2::Est
- Bio::Ucsc::CanFam2::Gap
- Bio::Ucsc::CanFam2::Gold
- Bio::Ucsc::CanFam2::IntronEst
- Bio::Ucsc::CanFam2::Mrna
- Bio::Ucsc::CanFam2::Rmsk
- Bio::Ucsc::CavPor3
- Bio::Ucsc::CavPor3::DBConnection
- Bio::Ucsc::Cb3
- Bio::Ucsc::Cb3::ChainCaePb1
- Bio::Ucsc::Cb3::ChainCaePb1Link
- Bio::Ucsc::Cb3::ChainCaeRem2
- Bio::Ucsc::Cb3::ChainCaeRem2Link
- Bio::Ucsc::Cb3::ChainCe6
- Bio::Ucsc::Cb3::ChainCe6Link
- Bio::Ucsc::Cb3::ChainPriPac1
- Bio::Ucsc::Cb3::ChainPriPac1Link
- Bio::Ucsc::Cb3::DBConnection
- Bio::Ucsc::Cb3::Est
- Bio::Ucsc::Cb3::Gap
- Bio::Ucsc::Cb3::Gold
- Bio::Ucsc::Cb3::IntronEst
- Bio::Ucsc::Cb3::Mrna
- Bio::Ucsc::Cb3::Rmsk
- Bio::Ucsc::Ce6
- Bio::Ucsc::Ce6::ChainCaeJap1
- Bio::Ucsc::Ce6::ChainCaeJap1Link
- Bio::Ucsc::Ce6::ChainCaePb2
- Bio::Ucsc::Ce6::ChainCaePb2Link
- Bio::Ucsc::Ce6::ChainCaeRem3
- Bio::Ucsc::Ce6::ChainCaeRem3Link
- Bio::Ucsc::Ce6::ChainCb3
- Bio::Ucsc::Ce6::ChainCb3Link
- Bio::Ucsc::Ce6::ChainPriPac1
- Bio::Ucsc::Ce6::ChainPriPac1Link
- Bio::Ucsc::Ce6::ChainSelf
- Bio::Ucsc::Ce6::ChainSelfLink
- Bio::Ucsc::Ce6::DBConnection
- Bio::Ucsc::Ce6::Est
- Bio::Ucsc::Ce6::Gap
- Bio::Ucsc::Ce6::Gold
- Bio::Ucsc::Ce6::IntronEst
- Bio::Ucsc::Ce6::Mrna
- Bio::Ucsc::Ce6::Rmsk
- Bio::Ucsc::Ce6::T25mersRepeats
- Bio::Ucsc::Ci2
- Bio::Ucsc::Ci2::DBConnection
- Bio::Ucsc::DanRer10
- Bio::Ucsc::DanRer10::DBConnection
- Bio::Ucsc::DanRer11
- Bio::Ucsc::DanRer11::DBConnection
- Bio::Ucsc::DanRer7
- Bio::Ucsc::DanRer7::DBConnection
- Bio::Ucsc::Dm3
- Bio::Ucsc::Dm3::ChainAnoGam1
- Bio::Ucsc::Dm3::ChainAnoGam1Link
- Bio::Ucsc::Dm3::ChainApiMel3
- Bio::Ucsc::Dm3::ChainApiMel3Link
- Bio::Ucsc::Dm3::ChainDp3
- Bio::Ucsc::Dm3::ChainDp3Link
- Bio::Ucsc::Dm3::ChainDroAna2
- Bio::Ucsc::Dm3::ChainDroAna2Link
- Bio::Ucsc::Dm3::ChainDroEre1
- Bio::Ucsc::Dm3::ChainDroEre1Link
- Bio::Ucsc::Dm3::ChainDroPer1
- Bio::Ucsc::Dm3::ChainDroPer1Link
- Bio::Ucsc::Dm3::ChainDroSec1
- Bio::Ucsc::Dm3::ChainDroSec1Link
- Bio::Ucsc::Dm3::ChainDroSim1
- Bio::Ucsc::Dm3::ChainDroSim1Link
- Bio::Ucsc::Dm3::ChainDroYak2
- Bio::Ucsc::Dm3::ChainDroYak2Link
- Bio::Ucsc::Dm3::DBConnection
- Bio::Ucsc::Dm3::Est
- Bio::Ucsc::Dm3::Gap
- Bio::Ucsc::Dm3::Gold
- Bio::Ucsc::Dm3::IntronEst
- Bio::Ucsc::Dm3::Mrna
- Bio::Ucsc::Dm3::Rmsk
- Bio::Ucsc::Dp3
- Bio::Ucsc::Dp3::ChainDm3
- Bio::Ucsc::Dp3::ChainDm3Link
- Bio::Ucsc::Dp3::DBConnection
- Bio::Ucsc::Dp3::Est
- Bio::Ucsc::Dp3::Gap
- Bio::Ucsc::Dp3::Gold
- Bio::Ucsc::Dp3::IntronEst
- Bio::Ucsc::Dp3::Mrna
- Bio::Ucsc::Dp3::Rmsk
- Bio::Ucsc::DroAna2
- Bio::Ucsc::DroAna2::DBConnection
- Bio::Ucsc::DroEre1
- Bio::Ucsc::DroEre1::DBConnection
- Bio::Ucsc::DroGri1
- Bio::Ucsc::DroGri1::DBConnection
- Bio::Ucsc::DroMoj2
- Bio::Ucsc::DroMoj2::DBConnection
- Bio::Ucsc::DroPer1
- Bio::Ucsc::DroPer1::DBConnection
- Bio::Ucsc::DroSec1
- Bio::Ucsc::DroSec1::DBConnection
- Bio::Ucsc::DroSim1
- Bio::Ucsc::DroSim1::ChainDm3
- Bio::Ucsc::DroSim1::ChainDm3Link
- Bio::Ucsc::DroSim1::DBConnection
- Bio::Ucsc::DroSim1::Est
- Bio::Ucsc::DroSim1::Gap
- Bio::Ucsc::DroSim1::Gold
- Bio::Ucsc::DroSim1::IntronEst
- Bio::Ucsc::DroSim1::Mrna
- Bio::Ucsc::DroSim1::Rmsk
- Bio::Ucsc::DroVir2
- Bio::Ucsc::DroVir2::DBConnection
- Bio::Ucsc::DroYak2
- Bio::Ucsc::DroYak2::ChainDm3
- Bio::Ucsc::DroYak2::ChainDm3Link
- Bio::Ucsc::DroYak2::DBConnection
- Bio::Ucsc::DroYak2::Est
- Bio::Ucsc::DroYak2::Gap
- Bio::Ucsc::DroYak2::Gold
- Bio::Ucsc::DroYak2::IntronEst
- Bio::Ucsc::DroYak2::Mrna
- Bio::Ucsc::DroYak2::Rmsk
- Bio::Ucsc::EquCab2
- Bio::Ucsc::EquCab2::DBConnection
- Bio::Ucsc::EquCab2::Est
- Bio::Ucsc::EquCab2::Gap
- Bio::Ucsc::EquCab2::Gold
- Bio::Ucsc::EquCab2::IntronEst
- Bio::Ucsc::EquCab2::Mrna
- Bio::Ucsc::EquCab2::Rmsk
- Bio::Ucsc::FelCat4
- Bio::Ucsc::FelCat4::DBConnection
- Bio::Ucsc::File
- Bio::Ucsc::File::ByteQueue
- Bio::Ucsc::File::Twobit
- Bio::Ucsc::Fr2
- Bio::Ucsc::Fr2::ChainGalGal3
- Bio::Ucsc::Fr2::ChainGalGal3Link
- Bio::Ucsc::Fr2::ChainGasAcu1
- Bio::Ucsc::Fr2::ChainGasAcu1Link
- Bio::Ucsc::Fr2::ChainMm9
- Bio::Ucsc::Fr2::ChainMm9Link
- Bio::Ucsc::Fr2::ChainOryLat2
- Bio::Ucsc::Fr2::ChainOryLat2Link
- Bio::Ucsc::Fr2::DBConnection
- Bio::Ucsc::Fr2::Est
- Bio::Ucsc::Fr2::Gap
- Bio::Ucsc::Fr2::Gold
- Bio::Ucsc::Fr2::IntronEst
- Bio::Ucsc::Fr2::Mrna
- Bio::Ucsc::Fr2::Rmsk
- Bio::Ucsc::GalGal4
- Bio::Ucsc::GalGal4::DBConnection
- Bio::Ucsc::GasAcu1
- Bio::Ucsc::GasAcu1::ChainAnoCar1
- Bio::Ucsc::GasAcu1::ChainAnoCar1Link
- Bio::Ucsc::GasAcu1::ChainFr2
- Bio::Ucsc::GasAcu1::ChainFr2Link
- Bio::Ucsc::GasAcu1::ChainGalGal3
- Bio::Ucsc::GasAcu1::ChainGalGal3Link
- Bio::Ucsc::GasAcu1::ChainMm9
- Bio::Ucsc::GasAcu1::ChainMm9Link
- Bio::Ucsc::GasAcu1::ChainOryLat2
- Bio::Ucsc::GasAcu1::ChainOryLat2Link
- Bio::Ucsc::GasAcu1::DBConnection
- Bio::Ucsc::GasAcu1::Est
- Bio::Ucsc::GasAcu1::IntronEst
- Bio::Ucsc::GasAcu1::Mrna
- Bio::Ucsc::GasAcu1::Rmsk
- Bio::Ucsc::Gi
- Bio::Ucsc::Go
- Bio::Ucsc::Go::DBConnection
- Bio::Ucsc::Hg18
- Bio::Ucsc::Hg18::ChainAnoCar1
- Bio::Ucsc::Hg18::ChainBosTau4
- Bio::Ucsc::Hg18::ChainBraFlo1
- Bio::Ucsc::Hg18::ChainCalJac1
- Bio::Ucsc::Hg18::ChainCanFam2
- Bio::Ucsc::Hg18::ChainCavPor3
- Bio::Ucsc::Hg18::ChainDanRer5
- Bio::Ucsc::Hg18::ChainEquCab1
- Bio::Ucsc::Hg18::ChainFelCat3
- Bio::Ucsc::Hg18::ChainFr2
- Bio::Ucsc::Hg18::ChainGalGal3
- Bio::Ucsc::Hg18::ChainGasAcu1
- Bio::Ucsc::Hg18::ChainMm9
- Bio::Ucsc::Hg18::ChainMonDom4
- Bio::Ucsc::Hg18::ChainOrnAna1
- Bio::Ucsc::Hg18::ChainOryLat2
- Bio::Ucsc::Hg18::ChainPanTro2
- Bio::Ucsc::Hg18::ChainPetMar1
- Bio::Ucsc::Hg18::ChainPonAbe2
- Bio::Ucsc::Hg18::ChainRheMac2
- Bio::Ucsc::Hg18::ChainRn4
- Bio::Ucsc::Hg18::ChainSelf
- Bio::Ucsc::Hg18::ChainStrPur2
- Bio::Ucsc::Hg18::ChainTaeGut1
- Bio::Ucsc::Hg18::ChainTetNig2
- Bio::Ucsc::Hg18::ChainXenTro2
- Bio::Ucsc::Hg18::DBConnection
- Bio::Ucsc::Hg18::Gap
- Bio::Ucsc::Hg18::Gold
- Bio::Ucsc::Hg18::IntronEst
- Bio::Ucsc::Hg18::Rmsk
- Bio::Ucsc::Hg18::RmskRM327
- Bio::Ucsc::Hg19
- Bio::Ucsc::Hg19::DBConnection
- Bio::Ucsc::Hg19::Description
- Bio::Ucsc::Hg19::GbCdnaInfo
- Bio::Ucsc::Hg38
- Bio::Ucsc::Hg38::DBConnection
- Bio::Ucsc::HgFixed
- Bio::Ucsc::HgFixed::DBConnection
- Bio::Ucsc::LoxAfr3
- Bio::Ucsc::LoxAfr3::DBConnection
- Bio::Ucsc::Mm10
- Bio::Ucsc::Mm10::DBConnection
- Bio::Ucsc::Mm10::Est
- Bio::Ucsc::Mm10::GbStatus
- Bio::Ucsc::Mm10::IntronEst
- Bio::Ucsc::Mm10::Mrna
- Bio::Ucsc::Mm9
- Bio::Ucsc::Mm9::ChainBraFlo1
- Bio::Ucsc::Mm9::ChainBraFlo1Link
- Bio::Ucsc::Mm9::ChainCanFam2
- Bio::Ucsc::Mm9::ChainCanFam2Link
- Bio::Ucsc::Mm9::ChainCavPor3
- Bio::Ucsc::Mm9::ChainCavPor3Link
- Bio::Ucsc::Mm9::ChainFr2
- Bio::Ucsc::Mm9::ChainFr2Link
- Bio::Ucsc::Mm9::ChainGalGal3
- Bio::Ucsc::Mm9::ChainGalGal3Link
- Bio::Ucsc::Mm9::ChainGasAcu1
- Bio::Ucsc::Mm9::ChainGasAcu1Link
- Bio::Ucsc::Mm9::ChainOrnAna1
- Bio::Ucsc::Mm9::ChainOrnAna1Link
- Bio::Ucsc::Mm9::ChainOryLat2
- Bio::Ucsc::Mm9::ChainOryLat2Link
- Bio::Ucsc::Mm9::ChainPetMar1
- Bio::Ucsc::Mm9::ChainPetMar1Link
- Bio::Ucsc::Mm9::ChainPonAbe2
- Bio::Ucsc::Mm9::ChainPonAbe2Link
- Bio::Ucsc::Mm9::ChainRheMac2
- Bio::Ucsc::Mm9::ChainRheMac2Link
- Bio::Ucsc::Mm9::ChainRn4
- Bio::Ucsc::Mm9::ChainRn4Link
- Bio::Ucsc::Mm9::DBConnection
- Bio::Ucsc::Mm9::Est
- Bio::Ucsc::Mm9::Gap
- Bio::Ucsc::Mm9::Gold
- Bio::Ucsc::Mm9::IntronEst
- Bio::Ucsc::Mm9::Mrna
- Bio::Ucsc::Mm9::Rmsk
- Bio::Ucsc::MonDom5
- Bio::Ucsc::MonDom5::DBConnection
- Bio::Ucsc::OrnAna1
- Bio::Ucsc::OrnAna1::DBConnection
- Bio::Ucsc::OryCun2
- Bio::Ucsc::OryCun2::DBConnection
- Bio::Ucsc::OryLat2
- Bio::Ucsc::OryLat2::DBConnection
- Bio::Ucsc::OviAri1
- Bio::Ucsc::OviAri1::DBConnection
- Bio::Ucsc::PanTro3
- Bio::Ucsc::PanTro3::DBConnection
- Bio::Ucsc::PetMar1
- Bio::Ucsc::PetMar1::DBConnection
- Bio::Ucsc::PonAbe2
- Bio::Ucsc::PonAbe2::ChainMm9
- Bio::Ucsc::PonAbe2::ChainMm9Link
- Bio::Ucsc::PonAbe2::ChainOrnAna1
- Bio::Ucsc::PonAbe2::ChainOrnAna1Link
- Bio::Ucsc::PonAbe2::ChainRheMac2
- Bio::Ucsc::PonAbe2::ChainRheMac2Link
- Bio::Ucsc::PonAbe2::DBConnection
- Bio::Ucsc::PonAbe2::Est
- Bio::Ucsc::PonAbe2::Gap
- Bio::Ucsc::PonAbe2::Gold
- Bio::Ucsc::PonAbe2::IntronEst
- Bio::Ucsc::PonAbe2::Mrna
- Bio::Ucsc::PonAbe2::Rmsk
- Bio::Ucsc::PriPac1
- Bio::Ucsc::PriPac1::ChainCaePb1
- Bio::Ucsc::PriPac1::ChainCaePb1Link
- Bio::Ucsc::PriPac1::ChainCaeRem2
- Bio::Ucsc::PriPac1::ChainCaeRem2Link
- Bio::Ucsc::PriPac1::ChainCb3
- Bio::Ucsc::PriPac1::ChainCb3Link
- Bio::Ucsc::PriPac1::ChainCe6
- Bio::Ucsc::PriPac1::ChainCe6Link
- Bio::Ucsc::PriPac1::DBConnection
- Bio::Ucsc::PriPac1::Gap
- Bio::Ucsc::PriPac1::Gold
- Bio::Ucsc::PriPac1::Rmsk
- Bio::Ucsc::Proteome
- Bio::Ucsc::Proteome::DBConnection
- Bio::Ucsc::Reference
- Bio::Ucsc::RheMac2
- Bio::Ucsc::RheMac2::ChainMm9
- Bio::Ucsc::RheMac2::ChainMm9Link
- Bio::Ucsc::RheMac2::ChainPonAbe2
- Bio::Ucsc::RheMac2::ChainPonAbe2Link
- Bio::Ucsc::RheMac2::ChainRn4
- Bio::Ucsc::RheMac2::ChainRn4Link
- Bio::Ucsc::RheMac2::DBConnection
- Bio::Ucsc::Rn4
- Bio::Ucsc::Rn4::ChainCanFam2
- Bio::Ucsc::Rn4::ChainCanFam2Link
- Bio::Ucsc::Rn4::ChainCavPor3
- Bio::Ucsc::Rn4::ChainCavPor3Link
- Bio::Ucsc::Rn4::ChainDanRer4
- Bio::Ucsc::Rn4::ChainDanRer4Link
- Bio::Ucsc::Rn4::ChainEquCab1
- Bio::Ucsc::Rn4::ChainEquCab1Link
- Bio::Ucsc::Rn4::ChainGalGal3
- Bio::Ucsc::Rn4::ChainGalGal3Link
- Bio::Ucsc::Rn4::ChainMm9
- Bio::Ucsc::Rn4::ChainMm9Link
- Bio::Ucsc::Rn4::ChainMonDom4
- Bio::Ucsc::Rn4::ChainMonDom4Link
- Bio::Ucsc::Rn4::ChainPanTro2
- Bio::Ucsc::Rn4::ChainPanTro2Link
- Bio::Ucsc::Rn4::ChainRheMac2
- Bio::Ucsc::Rn4::ChainRheMac2Link
- Bio::Ucsc::Rn4::DBConnection
- Bio::Ucsc::Rn4::Est
- Bio::Ucsc::Rn4::Gap
- Bio::Ucsc::Rn4::Gold
- Bio::Ucsc::Rn4::IntronEst
- Bio::Ucsc::Rn4::Mrna
- Bio::Ucsc::Rn4::Rmsk
- Bio::Ucsc::Rn5
- Bio::Ucsc::Rn5::DBConnection
- Bio::Ucsc::SacCer2
- Bio::Ucsc::SacCer2::DBConnection
- Bio::Ucsc::SacCer2::Est
- Bio::Ucsc::SacCer2::Gap
- Bio::Ucsc::SacCer2::Gold
- Bio::Ucsc::SacCer2::IntronEst
- Bio::Ucsc::SacCer2::Mrna
- Bio::Ucsc::SacCer2::T2micron_est
- Bio::Ucsc::SacCer2::T2micron_gap
- Bio::Ucsc::SacCer2::T2micron_gold
- Bio::Ucsc::SacCer2::T2micron_intronEst
- Bio::Ucsc::SacCer2::T2micron_mrna
- Bio::Ucsc::Schema
- Bio::Ucsc::Schema::Identifier
- Bio::Ucsc::Schema::Joiner
- Bio::Ucsc::Schema::Variables
- Bio::Ucsc::StrPur2
- Bio::Ucsc::StrPur2::DBConnection
- Bio::Ucsc::SusScr2
- Bio::Ucsc::SusScr2::DBConnection
- Bio::Ucsc::SusScr2::Est
- Bio::Ucsc::SusScr2::IntronEst
- Bio::Ucsc::SusScr2::Mrna
- Bio::Ucsc::TableClassDetector
- Bio::Ucsc::TaeGut1
- Bio::Ucsc::TaeGut1::ChainGalGal3
- Bio::Ucsc::TaeGut1::ChainGalGal3Link
- Bio::Ucsc::TaeGut1::DBConnection
- Bio::Ucsc::TaeGut1::Est
- Bio::Ucsc::TaeGut1::Gap
- Bio::Ucsc::TaeGut1::Gold
- Bio::Ucsc::TaeGut1::IntronEst
- Bio::Ucsc::TaeGut1::Mrna
- Bio::Ucsc::TaeGut1::Rmsk
- Bio::Ucsc::TetNig2
- Bio::Ucsc::TetNig2::DBConnection
- Bio::Ucsc::TetNig2::Mrna
- Bio::Ucsc::UcscBin
- Bio::Ucsc::UniProt
- Bio::Ucsc::UniProt::DBConnection
- Bio::Ucsc::VisiGene
- Bio::Ucsc::VisiGene::DBConnection
- Bio::Ucsc::XenTro2
- Bio::Ucsc::XenTro2::DBConnection
Methods
- ::bin — Bio::Ucsc::UcscBin
- ::bin_all — Bio::Ucsc::UcscBin
- ::bin_all_extended — Bio::Ucsc::UcscBin
- ::bin_all_standard — Bio::Ucsc::UcscBin
- ::bin_from_range — Bio::Ucsc::UcscBin
- ::bin_from_range_extended — Bio::Ucsc::UcscBin
- ::bin_from_range_standard — Bio::Ucsc::UcscBin
- ::connect — Bio::Ucsc::AilMel1::DBConnection
- ::connect — Bio::Ucsc::AnoCar2::DBConnection
- ::connect — Bio::Ucsc::AnoGam1::DBConnection
- ::connect — Bio::Ucsc::ApiMel2::DBConnection
- ::connect — Bio::Ucsc::AplCal1::DBConnection
- ::connect — Bio::Ucsc::BosTau4::DBConnection
- ::connect — Bio::Ucsc::BraFlo1::DBConnection
- ::connect — Bio::Ucsc::CaeJap1::DBConnection
- ::connect — Bio::Ucsc::CaePb2::DBConnection
- ::connect — Bio::Ucsc::CaeRem3::DBConnection
- ::connect — Bio::Ucsc::CalJac3::DBConnection
- ::connect — Bio::Ucsc::CanFam2::DBConnection
- ::connect — Bio::Ucsc::CavPor3::DBConnection
- ::connect — Bio::Ucsc::Cb3::DBConnection
- ::connect — Bio::Ucsc::Ce6::DBConnection
- ::connect — Bio::Ucsc::Ci2::DBConnection
- ::connect — Bio::Ucsc::DanRer10::DBConnection
- ::connect — Bio::Ucsc::DanRer11::DBConnection
- ::connect — Bio::Ucsc::DanRer7::DBConnection
- ::connect — Bio::Ucsc::Dm3::DBConnection
- ::connect — Bio::Ucsc::Dp3::DBConnection
- ::connect — Bio::Ucsc::DroAna2::DBConnection
- ::connect — Bio::Ucsc::DroEre1::DBConnection
- ::connect — Bio::Ucsc::DroGri1::DBConnection
- ::connect — Bio::Ucsc::DroMoj2::DBConnection
- ::connect — Bio::Ucsc::DroPer1::DBConnection
- ::connect — Bio::Ucsc::DroSec1::DBConnection
- ::connect — Bio::Ucsc::DroSim1::DBConnection
- ::connect — Bio::Ucsc::DroVir2::DBConnection
- ::connect — Bio::Ucsc::DroYak2::DBConnection
- ::connect — Bio::Ucsc::EquCab2::DBConnection
- ::connect — Bio::Ucsc::FelCat4::DBConnection
- ::connect — Bio::Ucsc::Fr2::DBConnection
- ::connect — Bio::Ucsc::GalGal4::DBConnection
- ::connect — Bio::Ucsc::GasAcu1::DBConnection
- ::connect — Bio::Ucsc::Go::DBConnection
- ::connect — Bio::Ucsc::Hg18::DBConnection
- ::connect — Bio::Ucsc::Hg19::DBConnection
- ::connect — Bio::Ucsc::Hg38::DBConnection
- ::connect — Bio::Ucsc::HgFixed::DBConnection
- ::connect — Bio::Ucsc::LoxAfr3::DBConnection
- ::connect — Bio::Ucsc::Mm10::DBConnection
- ::connect — Bio::Ucsc::Mm9::DBConnection
- ::connect — Bio::Ucsc::MonDom5::DBConnection
- ::connect — Bio::Ucsc::OrnAna1::DBConnection
- ::connect — Bio::Ucsc::OryCun2::DBConnection
- ::connect — Bio::Ucsc::OryLat2::DBConnection
- ::connect — Bio::Ucsc::OviAri1::DBConnection
- ::connect — Bio::Ucsc::PanTro3::DBConnection
- ::connect — Bio::Ucsc::PetMar1::DBConnection
- ::connect — Bio::Ucsc::PonAbe2::DBConnection
- ::connect — Bio::Ucsc::PriPac1::DBConnection
- ::connect — Bio::Ucsc::Proteome::DBConnection
- ::connect — Bio::Ucsc::RheMac2::DBConnection
- ::connect — Bio::Ucsc::Rn4::DBConnection
- ::connect — Bio::Ucsc::Rn5::DBConnection
- ::connect — Bio::Ucsc::SacCer2::DBConnection
- ::connect — Bio::Ucsc::StrPur2::DBConnection
- ::connect — Bio::Ucsc::SusScr2::DBConnection
- ::connect — Bio::Ucsc::TaeGut1::DBConnection
- ::connect — Bio::Ucsc::TetNig2::DBConnection
- ::connect — Bio::Ucsc::UniProt::DBConnection
- ::connect — Bio::Ucsc::VisiGene::DBConnection
- ::connect — Bio::Ucsc::XenTro2::DBConnection
- ::connect — Bio::Ucsc::AilMel1
- ::connect — Bio::Ucsc::AnoCar2
- ::connect — Bio::Ucsc::AnoGam1
- ::connect — Bio::Ucsc::ApiMel2
- ::connect — Bio::Ucsc::AplCal1
- ::connect — Bio::Ucsc::BosTau4
- ::connect — Bio::Ucsc::BraFlo1
- ::connect — Bio::Ucsc::CaeJap1
- ::connect — Bio::Ucsc::CaePb2
- ::connect — Bio::Ucsc::CaeRem3
- ::connect — Bio::Ucsc::CalJac3
- ::connect — Bio::Ucsc::CanFam2
- ::connect — Bio::Ucsc::CavPor3
- ::connect — Bio::Ucsc::Cb3
- ::connect — Bio::Ucsc::Ce6
- ::connect — Bio::Ucsc::Ci2
- ::connect — Bio::Ucsc::DanRer10
- ::connect — Bio::Ucsc::DanRer11
- ::connect — Bio::Ucsc::DanRer7
- ::connect — Bio::Ucsc::Dm3
- ::connect — Bio::Ucsc::Dp3
- ::connect — Bio::Ucsc::DroAna2
- ::connect — Bio::Ucsc::DroEre1
- ::connect — Bio::Ucsc::DroGri1
- ::connect — Bio::Ucsc::DroMoj2
- ::connect — Bio::Ucsc::DroPer1
- ::connect — Bio::Ucsc::DroSec1
- ::connect — Bio::Ucsc::DroSim1
- ::connect — Bio::Ucsc::DroVir2
- ::connect — Bio::Ucsc::DroYak2
- ::connect — Bio::Ucsc::EquCab2
- ::connect — Bio::Ucsc::FelCat4
- ::connect — Bio::Ucsc::Fr2
- ::connect — Bio::Ucsc::GalGal4
- ::connect — Bio::Ucsc::GasAcu1
- ::connect — Bio::Ucsc::Go
- ::connect — Bio::Ucsc::Hg18
- ::connect — Bio::Ucsc::Hg19
- ::connect — Bio::Ucsc::Hg38
- ::connect — Bio::Ucsc::HgFixed
- ::connect — Bio::Ucsc::LoxAfr3
- ::connect — Bio::Ucsc::Mm10
- ::connect — Bio::Ucsc::Mm9
- ::connect — Bio::Ucsc::MonDom5
- ::connect — Bio::Ucsc::OrnAna1
- ::connect — Bio::Ucsc::OryCun2
- ::connect — Bio::Ucsc::OryLat2
- ::connect — Bio::Ucsc::OviAri1
- ::connect — Bio::Ucsc::PanTro3
- ::connect — Bio::Ucsc::PetMar1
- ::connect — Bio::Ucsc::PonAbe2
- ::connect — Bio::Ucsc::PriPac1
- ::connect — Bio::Ucsc::Proteome
- ::connect — Bio::Ucsc::RheMac2
- ::connect — Bio::Ucsc::Rn4
- ::connect — Bio::Ucsc::Rn5
- ::connect — Bio::Ucsc::SacCer2
- ::connect — Bio::Ucsc::StrPur2
- ::connect — Bio::Ucsc::SusScr2
- ::connect — Bio::Ucsc::TaeGut1
- ::connect — Bio::Ucsc::TetNig2
- ::connect — Bio::Ucsc::UniProt
- ::connect — Bio::Ucsc::VisiGene
- ::connect — Bio::Ucsc::XenTro2
- ::default — Bio::Ucsc::AilMel1::DBConnection
- ::default — Bio::Ucsc::AnoCar2::DBConnection
- ::default — Bio::Ucsc::AnoGam1::DBConnection
- ::default — Bio::Ucsc::ApiMel2::DBConnection
- ::default — Bio::Ucsc::AplCal1::DBConnection
- ::default — Bio::Ucsc::BosTau4::DBConnection
- ::default — Bio::Ucsc::BraFlo1::DBConnection
- ::default — Bio::Ucsc::CaeJap1::DBConnection
- ::default — Bio::Ucsc::CaePb2::DBConnection
- ::default — Bio::Ucsc::CaeRem3::DBConnection
- ::default — Bio::Ucsc::CalJac3::DBConnection
- ::default — Bio::Ucsc::CanFam2::DBConnection
- ::default — Bio::Ucsc::CavPor3::DBConnection
- ::default — Bio::Ucsc::Cb3::DBConnection
- ::default — Bio::Ucsc::Ce6::DBConnection
- ::default — Bio::Ucsc::Ci2::DBConnection
- ::default — Bio::Ucsc::DanRer10::DBConnection
- ::default — Bio::Ucsc::DanRer11::DBConnection
- ::default — Bio::Ucsc::DanRer7::DBConnection
- ::default — Bio::Ucsc::Dm3::DBConnection
- ::default — Bio::Ucsc::Dp3::DBConnection
- ::default — Bio::Ucsc::DroAna2::DBConnection
- ::default — Bio::Ucsc::DroEre1::DBConnection
- ::default — Bio::Ucsc::DroGri1::DBConnection
- ::default — Bio::Ucsc::DroMoj2::DBConnection
- ::default — Bio::Ucsc::DroPer1::DBConnection
- ::default — Bio::Ucsc::DroSec1::DBConnection
- ::default — Bio::Ucsc::DroSim1::DBConnection
- ::default — Bio::Ucsc::DroVir2::DBConnection
- ::default — Bio::Ucsc::DroYak2::DBConnection
- ::default — Bio::Ucsc::EquCab2::DBConnection
- ::default — Bio::Ucsc::FelCat4::DBConnection
- ::default — Bio::Ucsc::Fr2::DBConnection
- ::default — Bio::Ucsc::GalGal4::DBConnection
- ::default — Bio::Ucsc::GasAcu1::DBConnection
- ::default — Bio::Ucsc::Go::DBConnection
- ::default — Bio::Ucsc::Hg18::DBConnection
- ::default — Bio::Ucsc::Hg19::DBConnection
- ::default — Bio::Ucsc::Hg38::DBConnection
- ::default — Bio::Ucsc::HgFixed::DBConnection
- ::default — Bio::Ucsc::LoxAfr3::DBConnection
- ::default — Bio::Ucsc::Mm10::DBConnection
- ::default — Bio::Ucsc::Mm9::DBConnection
- ::default — Bio::Ucsc::MonDom5::DBConnection
- ::default — Bio::Ucsc::OrnAna1::DBConnection
- ::default — Bio::Ucsc::OryCun2::DBConnection
- ::default — Bio::Ucsc::OryLat2::DBConnection
- ::default — Bio::Ucsc::OviAri1::DBConnection
- ::default — Bio::Ucsc::PanTro3::DBConnection
- ::default — Bio::Ucsc::PetMar1::DBConnection
- ::default — Bio::Ucsc::PonAbe2::DBConnection
- ::default — Bio::Ucsc::PriPac1::DBConnection
- ::default — Bio::Ucsc::Proteome::DBConnection
- ::default — Bio::Ucsc::RheMac2::DBConnection
- ::default — Bio::Ucsc::Rn4::DBConnection
- ::default — Bio::Ucsc::Rn5::DBConnection
- ::default — Bio::Ucsc::SacCer2::DBConnection
- ::default — Bio::Ucsc::StrPur2::DBConnection
- ::default — Bio::Ucsc::SusScr2::DBConnection
- ::default — Bio::Ucsc::TaeGut1::DBConnection
- ::default — Bio::Ucsc::TetNig2::DBConnection
- ::default — Bio::Ucsc::UniProt::DBConnection
- ::default — Bio::Ucsc::VisiGene::DBConnection
- ::default — Bio::Ucsc::XenTro2::DBConnection
- ::default — Bio::Ucsc::AilMel1
- ::default — Bio::Ucsc::AnoCar2
- ::default — Bio::Ucsc::AnoGam1
- ::default — Bio::Ucsc::ApiMel2
- ::default — Bio::Ucsc::AplCal1
- ::default — Bio::Ucsc::BosTau4
- ::default — Bio::Ucsc::BraFlo1
- ::default — Bio::Ucsc::CaeJap1
- ::default — Bio::Ucsc::CaePb2
- ::default — Bio::Ucsc::CaeRem3
- ::default — Bio::Ucsc::CalJac3
- ::default — Bio::Ucsc::CanFam2
- ::default — Bio::Ucsc::CavPor3
- ::default — Bio::Ucsc::Cb3
- ::default — Bio::Ucsc::Ce6
- ::default — Bio::Ucsc::Ci2
- ::default — Bio::Ucsc::DanRer10
- ::default — Bio::Ucsc::DanRer11
- ::default — Bio::Ucsc::DanRer7
- ::default — Bio::Ucsc::Dm3
- ::default — Bio::Ucsc::Dp3
- ::default — Bio::Ucsc::DroAna2
- ::default — Bio::Ucsc::DroEre1
- ::default — Bio::Ucsc::DroGri1
- ::default — Bio::Ucsc::DroMoj2
- ::default — Bio::Ucsc::DroPer1
- ::default — Bio::Ucsc::DroSec1
- ::default — Bio::Ucsc::DroSim1
- ::default — Bio::Ucsc::DroVir2
- ::default — Bio::Ucsc::DroYak2
- ::default — Bio::Ucsc::EquCab2
- ::default — Bio::Ucsc::FelCat4
- ::default — Bio::Ucsc::Fr2
- ::default — Bio::Ucsc::GalGal4
- ::default — Bio::Ucsc::GasAcu1
- ::default — Bio::Ucsc::Go
- ::default — Bio::Ucsc::Hg18
- ::default — Bio::Ucsc::Hg19
- ::default — Bio::Ucsc::Hg38
- ::default — Bio::Ucsc::HgFixed
- ::default — Bio::Ucsc::LoxAfr3
- ::default — Bio::Ucsc::Mm10
- ::default — Bio::Ucsc::Mm9
- ::default — Bio::Ucsc::MonDom5
- ::default — Bio::Ucsc::OrnAna1
- ::default — Bio::Ucsc::OryCun2
- ::default — Bio::Ucsc::OryLat2
- ::default — Bio::Ucsc::OviAri1
- ::default — Bio::Ucsc::PanTro3
- ::default — Bio::Ucsc::PetMar1
- ::default — Bio::Ucsc::PonAbe2
- ::default — Bio::Ucsc::PriPac1
- ::default — Bio::Ucsc::Proteome
- ::default — Bio::Ucsc::RheMac2
- ::default — Bio::Ucsc::Rn4
- ::default — Bio::Ucsc::Rn5
- ::default — Bio::Ucsc::SacCer2
- ::default — Bio::Ucsc::StrPur2
- ::default — Bio::Ucsc::SusScr2
- ::default — Bio::Ucsc::TaeGut1
- ::default — Bio::Ucsc::TetNig2
- ::default — Bio::Ucsc::UniProt
- ::default — Bio::Ucsc::VisiGene
- ::default — Bio::Ucsc::XenTro2
- ::find_all_by_interval — Bio::Ucsc::AnoGam1::ChainDm3
- ::find_all_by_interval — Bio::Ucsc::AnoGam1::ChainDm3Link
- ::find_all_by_interval — Bio::Ucsc::AnoGam1::Est
- ::find_all_by_interval — Bio::Ucsc::AnoGam1::Gap
- ::find_all_by_interval — Bio::Ucsc::AnoGam1::Gold
- ::find_all_by_interval — Bio::Ucsc::AnoGam1::IntronEst
- ::find_all_by_interval — Bio::Ucsc::AnoGam1::Mrna
- ::find_all_by_interval — Bio::Ucsc::AnoGam1::Rmsk
- ::find_all_by_interval — Bio::Ucsc::ApiMel2::ChainDm2
- ::find_all_by_interval — Bio::Ucsc::ApiMel2::ChainDm2Link
- ::find_all_by_interval — Bio::Ucsc::BraFlo1::ChainGalGal3
- ::find_all_by_interval — Bio::Ucsc::BraFlo1::ChainGalGal3Link
- ::find_all_by_interval — Bio::Ucsc::BraFlo1::ChainHg18
- ::find_all_by_interval — Bio::Ucsc::BraFlo1::ChainHg18Link
- ::find_all_by_interval — Bio::Ucsc::BraFlo1::ChainMm9
- ::find_all_by_interval — Bio::Ucsc::BraFlo1::ChainMm9Link
- ::find_all_by_interval — Bio::Ucsc::BraFlo1::ChainPetMar1
- ::find_all_by_interval — Bio::Ucsc::BraFlo1::ChainPetMar1Link
- ::find_all_by_interval — Bio::Ucsc::BraFlo1::Gap
- ::find_all_by_interval — Bio::Ucsc::BraFlo1::Gold
- ::find_all_by_interval — Bio::Ucsc::CaeJap1::ChainCe6
- ::find_all_by_interval — Bio::Ucsc::CaeJap1::ChainCe6Link
- ::find_all_by_interval — Bio::Ucsc::CaeJap1::Gap
- ::find_all_by_interval — Bio::Ucsc::CaeJap1::Gold
- ::find_all_by_interval — Bio::Ucsc::CaePb2::ChainCe6
- ::find_all_by_interval — Bio::Ucsc::CaePb2::ChainCe6Link
- ::find_all_by_interval — Bio::Ucsc::CaePb2::Gap
- ::find_all_by_interval — Bio::Ucsc::CaePb2::Gold
- ::find_all_by_interval — Bio::Ucsc::CaeRem3::ChainCe6
- ::find_all_by_interval — Bio::Ucsc::CaeRem3::ChainCe6Link
- ::find_all_by_interval — Bio::Ucsc::CaeRem3::Gap
- ::find_all_by_interval — Bio::Ucsc::CaeRem3::Gold
- ::find_all_by_interval — Bio::Ucsc::CanFam2::ChainBosTau4
- ::find_all_by_interval — Bio::Ucsc::CanFam2::ChainBosTau4Link
- ::find_all_by_interval — Bio::Ucsc::CanFam2::ChainMm9
- ::find_all_by_interval — Bio::Ucsc::CanFam2::ChainMm9Link
- ::find_all_by_interval — Bio::Ucsc::CanFam2::ChainRn4
- ::find_all_by_interval — Bio::Ucsc::CanFam2::ChainRn4Link
- ::find_all_by_interval — Bio::Ucsc::CanFam2::ChainSelf
- ::find_all_by_interval — Bio::Ucsc::CanFam2::ChainSelfLink
- ::find_all_by_interval — Bio::Ucsc::CanFam2::Est
- ::find_all_by_interval — Bio::Ucsc::CanFam2::Gap
- ::find_all_by_interval — Bio::Ucsc::CanFam2::Gold
- ::find_all_by_interval — Bio::Ucsc::CanFam2::IntronEst
- ::find_all_by_interval — Bio::Ucsc::CanFam2::Mrna
- ::find_all_by_interval — Bio::Ucsc::CanFam2::Rmsk
- ::find_all_by_interval — Bio::Ucsc::Cb3::ChainCaePb1
- ::find_all_by_interval — Bio::Ucsc::Cb3::ChainCaePb1Link
- ::find_all_by_interval — Bio::Ucsc::Cb3::ChainCaeRem2
- ::find_all_by_interval — Bio::Ucsc::Cb3::ChainCaeRem2Link
- ::find_all_by_interval — Bio::Ucsc::Cb3::ChainCe6
- ::find_all_by_interval — Bio::Ucsc::Cb3::ChainCe6Link
- ::find_all_by_interval — Bio::Ucsc::Cb3::ChainPriPac1
- ::find_all_by_interval — Bio::Ucsc::Cb3::ChainPriPac1Link
- ::find_all_by_interval — Bio::Ucsc::Cb3::Est
- ::find_all_by_interval — Bio::Ucsc::Cb3::Gap
- ::find_all_by_interval — Bio::Ucsc::Cb3::Gold
- ::find_all_by_interval — Bio::Ucsc::Cb3::IntronEst
- ::find_all_by_interval — Bio::Ucsc::Cb3::Mrna
- ::find_all_by_interval — Bio::Ucsc::Cb3::Rmsk
- ::find_all_by_interval — Bio::Ucsc::Ce6::ChainCaeJap1
- ::find_all_by_interval — Bio::Ucsc::Ce6::ChainCaeJap1Link
- ::find_all_by_interval — Bio::Ucsc::Ce6::ChainCaePb2
- ::find_all_by_interval — Bio::Ucsc::Ce6::ChainCaePb2Link
- ::find_all_by_interval — Bio::Ucsc::Ce6::ChainCaeRem3
- ::find_all_by_interval — Bio::Ucsc::Ce6::ChainCaeRem3Link
- ::find_all_by_interval — Bio::Ucsc::Ce6::ChainCb3
- ::find_all_by_interval — Bio::Ucsc::Ce6::ChainCb3Link
- ::find_all_by_interval — Bio::Ucsc::Ce6::ChainPriPac1
- ::find_all_by_interval — Bio::Ucsc::Ce6::ChainPriPac1Link
- ::find_all_by_interval — Bio::Ucsc::Ce6::ChainSelf
- ::find_all_by_interval — Bio::Ucsc::Ce6::ChainSelfLink
- ::find_all_by_interval — Bio::Ucsc::Ce6::Est
- ::find_all_by_interval — Bio::Ucsc::Ce6::Gap
- ::find_all_by_interval — Bio::Ucsc::Ce6::Gold
- ::find_all_by_interval — Bio::Ucsc::Ce6::IntronEst
- ::find_all_by_interval — Bio::Ucsc::Ce6::Mrna
- ::find_all_by_interval — Bio::Ucsc::Ce6::Rmsk
- ::find_all_by_interval — Bio::Ucsc::Ce6::T25mersRepeats
- ::find_all_by_interval — Bio::Ucsc::Dm3::ChainAnoGam1
- ::find_all_by_interval — Bio::Ucsc::Dm3::ChainAnoGam1Link
- ::find_all_by_interval — Bio::Ucsc::Dm3::ChainApiMel3
- ::find_all_by_interval — Bio::Ucsc::Dm3::ChainApiMel3Link
- ::find_all_by_interval — Bio::Ucsc::Dm3::ChainDp3
- ::find_all_by_interval — Bio::Ucsc::Dm3::ChainDp3Link
- ::find_all_by_interval — Bio::Ucsc::Dm3::ChainDroAna2
- ::find_all_by_interval — Bio::Ucsc::Dm3::ChainDroAna2Link
- ::find_all_by_interval — Bio::Ucsc::Dm3::ChainDroEre1
- ::find_all_by_interval — Bio::Ucsc::Dm3::ChainDroEre1Link
- ::find_all_by_interval — Bio::Ucsc::Dm3::ChainDroPer1
- ::find_all_by_interval — Bio::Ucsc::Dm3::ChainDroPer1Link
- ::find_all_by_interval — Bio::Ucsc::Dm3::ChainDroSec1
- ::find_all_by_interval — Bio::Ucsc::Dm3::ChainDroSec1Link
- ::find_all_by_interval — Bio::Ucsc::Dm3::ChainDroSim1
- ::find_all_by_interval — Bio::Ucsc::Dm3::ChainDroSim1Link
- ::find_all_by_interval — Bio::Ucsc::Dm3::ChainDroYak2
- ::find_all_by_interval — Bio::Ucsc::Dm3::ChainDroYak2Link
- ::find_all_by_interval — Bio::Ucsc::Dm3::Est
- ::find_all_by_interval — Bio::Ucsc::Dm3::Gap
- ::find_all_by_interval — Bio::Ucsc::Dm3::Gold
- ::find_all_by_interval — Bio::Ucsc::Dm3::IntronEst
- ::find_all_by_interval — Bio::Ucsc::Dm3::Mrna
- ::find_all_by_interval — Bio::Ucsc::Dm3::Rmsk
- ::find_all_by_interval — Bio::Ucsc::Dp3::ChainDm3
- ::find_all_by_interval — Bio::Ucsc::Dp3::ChainDm3Link
- ::find_all_by_interval — Bio::Ucsc::Dp3::Est
- ::find_all_by_interval — Bio::Ucsc::Dp3::Gap
- ::find_all_by_interval — Bio::Ucsc::Dp3::Gold
- ::find_all_by_interval — Bio::Ucsc::Dp3::IntronEst
- ::find_all_by_interval — Bio::Ucsc::Dp3::Mrna
- ::find_all_by_interval — Bio::Ucsc::Dp3::Rmsk
- ::find_all_by_interval — Bio::Ucsc::DroSim1::ChainDm3
- ::find_all_by_interval — Bio::Ucsc::DroSim1::ChainDm3Link
- ::find_all_by_interval — Bio::Ucsc::DroSim1::Est
- ::find_all_by_interval — Bio::Ucsc::DroSim1::Gap
- ::find_all_by_interval — Bio::Ucsc::DroSim1::Gold
- ::find_all_by_interval — Bio::Ucsc::DroSim1::IntronEst
- ::find_all_by_interval — Bio::Ucsc::DroSim1::Mrna
- ::find_all_by_interval — Bio::Ucsc::DroSim1::Rmsk
- ::find_all_by_interval — Bio::Ucsc::DroYak2::ChainDm3
- ::find_all_by_interval — Bio::Ucsc::DroYak2::ChainDm3Link
- ::find_all_by_interval — Bio::Ucsc::DroYak2::Est
- ::find_all_by_interval — Bio::Ucsc::DroYak2::Gap
- ::find_all_by_interval — Bio::Ucsc::DroYak2::Gold
- ::find_all_by_interval — Bio::Ucsc::DroYak2::IntronEst
- ::find_all_by_interval — Bio::Ucsc::DroYak2::Mrna
- ::find_all_by_interval — Bio::Ucsc::DroYak2::Rmsk
- ::find_all_by_interval — Bio::Ucsc::EquCab2::Est
- ::find_all_by_interval — Bio::Ucsc::EquCab2::Gap
- ::find_all_by_interval — Bio::Ucsc::EquCab2::Gold
- ::find_all_by_interval — Bio::Ucsc::EquCab2::IntronEst
- ::find_all_by_interval — Bio::Ucsc::EquCab2::Mrna
- ::find_all_by_interval — Bio::Ucsc::EquCab2::Rmsk
- ::find_all_by_interval — Bio::Ucsc::Fr2::ChainGalGal3
- ::find_all_by_interval — Bio::Ucsc::Fr2::ChainGalGal3Link
- ::find_all_by_interval — Bio::Ucsc::Fr2::ChainGasAcu1
- ::find_all_by_interval — Bio::Ucsc::Fr2::ChainGasAcu1Link
- ::find_all_by_interval — Bio::Ucsc::Fr2::ChainMm9
- ::find_all_by_interval — Bio::Ucsc::Fr2::ChainMm9Link
- ::find_all_by_interval — Bio::Ucsc::Fr2::ChainOryLat2
- ::find_all_by_interval — Bio::Ucsc::Fr2::ChainOryLat2Link
- ::find_all_by_interval — Bio::Ucsc::Fr2::Est
- ::find_all_by_interval — Bio::Ucsc::Fr2::Gap
- ::find_all_by_interval — Bio::Ucsc::Fr2::Gold
- ::find_all_by_interval — Bio::Ucsc::Fr2::IntronEst
- ::find_all_by_interval — Bio::Ucsc::Fr2::Mrna
- ::find_all_by_interval — Bio::Ucsc::Fr2::Rmsk
- ::find_all_by_interval — Bio::Ucsc::GasAcu1::ChainAnoCar1
- ::find_all_by_interval — Bio::Ucsc::GasAcu1::ChainAnoCar1Link
- ::find_all_by_interval — Bio::Ucsc::GasAcu1::ChainFr2
- ::find_all_by_interval — Bio::Ucsc::GasAcu1::ChainFr2Link
- ::find_all_by_interval — Bio::Ucsc::GasAcu1::ChainGalGal3
- ::find_all_by_interval — Bio::Ucsc::GasAcu1::ChainGalGal3Link
- ::find_all_by_interval — Bio::Ucsc::GasAcu1::ChainMm9
- ::find_all_by_interval — Bio::Ucsc::GasAcu1::ChainMm9Link
- ::find_all_by_interval — Bio::Ucsc::GasAcu1::ChainOryLat2
- ::find_all_by_interval — Bio::Ucsc::GasAcu1::ChainOryLat2Link
- ::find_all_by_interval — Bio::Ucsc::GasAcu1::Est
- ::find_all_by_interval — Bio::Ucsc::GasAcu1::IntronEst
- ::find_all_by_interval — Bio::Ucsc::GasAcu1::Mrna
- ::find_all_by_interval — Bio::Ucsc::GasAcu1::Rmsk
- ::find_all_by_interval — Bio::Ucsc::Hg18::ChainAnoCar1
- ::find_all_by_interval — Bio::Ucsc::Hg18::ChainBosTau4
- ::find_all_by_interval — Bio::Ucsc::Hg18::ChainBraFlo1
- ::find_all_by_interval — Bio::Ucsc::Hg18::ChainCalJac1
- ::find_all_by_interval — Bio::Ucsc::Hg18::ChainCanFam2
- ::find_all_by_interval — Bio::Ucsc::Hg18::ChainCavPor3
- ::find_all_by_interval — Bio::Ucsc::Hg18::ChainDanRer5
- ::find_all_by_interval — Bio::Ucsc::Hg18::ChainEquCab1
- ::find_all_by_interval — Bio::Ucsc::Hg18::ChainFelCat3
- ::find_all_by_interval — Bio::Ucsc::Hg18::ChainFr2
- ::find_all_by_interval — Bio::Ucsc::Hg18::ChainGalGal3
- ::find_all_by_interval — Bio::Ucsc::Hg18::ChainGasAcu1
- ::find_all_by_interval — Bio::Ucsc::Hg18::ChainMm9
- ::find_all_by_interval — Bio::Ucsc::Hg18::ChainMonDom4
- ::find_all_by_interval — Bio::Ucsc::Hg18::ChainOrnAna1
- ::find_all_by_interval — Bio::Ucsc::Hg18::ChainOryLat2
- ::find_all_by_interval — Bio::Ucsc::Hg18::ChainPanTro2
- ::find_all_by_interval — Bio::Ucsc::Hg18::ChainPetMar1
- ::find_all_by_interval — Bio::Ucsc::Hg18::ChainPonAbe2
- ::find_all_by_interval — Bio::Ucsc::Hg18::ChainRheMac2
- ::find_all_by_interval — Bio::Ucsc::Hg18::ChainRn4
- ::find_all_by_interval — Bio::Ucsc::Hg18::ChainSelf
- ::find_all_by_interval — Bio::Ucsc::Hg18::ChainStrPur2
- ::find_all_by_interval — Bio::Ucsc::Hg18::ChainTaeGut1
- ::find_all_by_interval — Bio::Ucsc::Hg18::ChainTetNig2
- ::find_all_by_interval — Bio::Ucsc::Hg18::ChainXenTro2
- ::find_all_by_interval — Bio::Ucsc::Hg18::Gap
- ::find_all_by_interval — Bio::Ucsc::Hg18::Gold
- ::find_all_by_interval — Bio::Ucsc::Hg18::IntronEst
- ::find_all_by_interval — Bio::Ucsc::Hg18::Rmsk
- ::find_all_by_interval — Bio::Ucsc::Hg18::RmskRM327
- ::find_all_by_interval — Bio::Ucsc::Mm10::Est
- ::find_all_by_interval — Bio::Ucsc::Mm10::IntronEst
- ::find_all_by_interval — Bio::Ucsc::Mm10::Mrna
- ::find_all_by_interval — Bio::Ucsc::Mm9::ChainBraFlo1
- ::find_all_by_interval — Bio::Ucsc::Mm9::ChainBraFlo1Link
- ::find_all_by_interval — Bio::Ucsc::Mm9::ChainCanFam2
- ::find_all_by_interval — Bio::Ucsc::Mm9::ChainCanFam2Link
- ::find_all_by_interval — Bio::Ucsc::Mm9::ChainCavPor3
- ::find_all_by_interval — Bio::Ucsc::Mm9::ChainCavPor3Link
- ::find_all_by_interval — Bio::Ucsc::Mm9::ChainFr2
- ::find_all_by_interval — Bio::Ucsc::Mm9::ChainFr2Link
- ::find_all_by_interval — Bio::Ucsc::Mm9::ChainGalGal3
- ::find_all_by_interval — Bio::Ucsc::Mm9::ChainGalGal3Link
- ::find_all_by_interval — Bio::Ucsc::Mm9::ChainGasAcu1
- ::find_all_by_interval — Bio::Ucsc::Mm9::ChainGasAcu1Link
- ::find_all_by_interval — Bio::Ucsc::Mm9::ChainOrnAna1
- ::find_all_by_interval — Bio::Ucsc::Mm9::ChainOrnAna1Link
- ::find_all_by_interval — Bio::Ucsc::Mm9::ChainOryLat2
- ::find_all_by_interval — Bio::Ucsc::Mm9::ChainOryLat2Link
- ::find_all_by_interval — Bio::Ucsc::Mm9::ChainPetMar1
- ::find_all_by_interval — Bio::Ucsc::Mm9::ChainPetMar1Link
- ::find_all_by_interval — Bio::Ucsc::Mm9::ChainPonAbe2
- ::find_all_by_interval — Bio::Ucsc::Mm9::ChainPonAbe2Link
- ::find_all_by_interval — Bio::Ucsc::Mm9::ChainRheMac2
- ::find_all_by_interval — Bio::Ucsc::Mm9::ChainRheMac2Link
- ::find_all_by_interval — Bio::Ucsc::Mm9::ChainRn4
- ::find_all_by_interval — Bio::Ucsc::Mm9::ChainRn4Link
- ::find_all_by_interval — Bio::Ucsc::Mm9::Est
- ::find_all_by_interval — Bio::Ucsc::Mm9::Gap
- ::find_all_by_interval — Bio::Ucsc::Mm9::Gold
- ::find_all_by_interval — Bio::Ucsc::Mm9::IntronEst
- ::find_all_by_interval — Bio::Ucsc::Mm9::Mrna
- ::find_all_by_interval — Bio::Ucsc::Mm9::Rmsk
- ::find_all_by_interval — Bio::Ucsc::PonAbe2::ChainMm9
- ::find_all_by_interval — Bio::Ucsc::PonAbe2::ChainMm9Link
- ::find_all_by_interval — Bio::Ucsc::PonAbe2::ChainOrnAna1
- ::find_all_by_interval — Bio::Ucsc::PonAbe2::ChainOrnAna1Link
- ::find_all_by_interval — Bio::Ucsc::PonAbe2::ChainRheMac2
- ::find_all_by_interval — Bio::Ucsc::PonAbe2::ChainRheMac2Link
- ::find_all_by_interval — Bio::Ucsc::PonAbe2::Est
- ::find_all_by_interval — Bio::Ucsc::PonAbe2::Gap
- ::find_all_by_interval — Bio::Ucsc::PonAbe2::Gold
- ::find_all_by_interval — Bio::Ucsc::PonAbe2::IntronEst
- ::find_all_by_interval — Bio::Ucsc::PonAbe2::Mrna
- ::find_all_by_interval — Bio::Ucsc::PonAbe2::Rmsk
- ::find_all_by_interval — Bio::Ucsc::PriPac1::ChainCaePb1
- ::find_all_by_interval — Bio::Ucsc::PriPac1::ChainCaePb1Link
- ::find_all_by_interval — Bio::Ucsc::PriPac1::ChainCaeRem2
- ::find_all_by_interval — Bio::Ucsc::PriPac1::ChainCaeRem2Link
- ::find_all_by_interval — Bio::Ucsc::PriPac1::ChainCb3
- ::find_all_by_interval — Bio::Ucsc::PriPac1::ChainCb3Link
- ::find_all_by_interval — Bio::Ucsc::PriPac1::ChainCe6
- ::find_all_by_interval — Bio::Ucsc::PriPac1::ChainCe6Link
- ::find_all_by_interval — Bio::Ucsc::PriPac1::Gap
- ::find_all_by_interval — Bio::Ucsc::PriPac1::Gold
- ::find_all_by_interval — Bio::Ucsc::PriPac1::Rmsk
- ::find_all_by_interval — Bio::Ucsc::RheMac2::ChainMm9
- ::find_all_by_interval — Bio::Ucsc::RheMac2::ChainMm9Link
- ::find_all_by_interval — Bio::Ucsc::RheMac2::ChainPonAbe2
- ::find_all_by_interval — Bio::Ucsc::RheMac2::ChainPonAbe2Link
- ::find_all_by_interval — Bio::Ucsc::RheMac2::ChainRn4
- ::find_all_by_interval — Bio::Ucsc::RheMac2::ChainRn4Link
- ::find_all_by_interval — Bio::Ucsc::Rn4::ChainCanFam2
- ::find_all_by_interval — Bio::Ucsc::Rn4::ChainCanFam2Link
- ::find_all_by_interval — Bio::Ucsc::Rn4::ChainCavPor3
- ::find_all_by_interval — Bio::Ucsc::Rn4::ChainCavPor3Link
- ::find_all_by_interval — Bio::Ucsc::Rn4::ChainDanRer4
- ::find_all_by_interval — Bio::Ucsc::Rn4::ChainDanRer4Link
- ::find_all_by_interval — Bio::Ucsc::Rn4::ChainEquCab1
- ::find_all_by_interval — Bio::Ucsc::Rn4::ChainEquCab1Link
- ::find_all_by_interval — Bio::Ucsc::Rn4::ChainGalGal3
- ::find_all_by_interval — Bio::Ucsc::Rn4::ChainGalGal3Link
- ::find_all_by_interval — Bio::Ucsc::Rn4::ChainMm9
- ::find_all_by_interval — Bio::Ucsc::Rn4::ChainMm9Link
- ::find_all_by_interval — Bio::Ucsc::Rn4::ChainMonDom4
- ::find_all_by_interval — Bio::Ucsc::Rn4::ChainMonDom4Link
- ::find_all_by_interval — Bio::Ucsc::Rn4::ChainPanTro2
- ::find_all_by_interval — Bio::Ucsc::Rn4::ChainPanTro2Link
- ::find_all_by_interval — Bio::Ucsc::Rn4::ChainRheMac2
- ::find_all_by_interval — Bio::Ucsc::Rn4::ChainRheMac2Link
- ::find_all_by_interval — Bio::Ucsc::Rn4::Est
- ::find_all_by_interval — Bio::Ucsc::Rn4::Gap
- ::find_all_by_interval — Bio::Ucsc::Rn4::Gold
- ::find_all_by_interval — Bio::Ucsc::Rn4::IntronEst
- ::find_all_by_interval — Bio::Ucsc::Rn4::Mrna
- ::find_all_by_interval — Bio::Ucsc::Rn4::Rmsk
- ::find_all_by_interval — Bio::Ucsc::SacCer2::Est
- ::find_all_by_interval — Bio::Ucsc::SacCer2::Gap
- ::find_all_by_interval — Bio::Ucsc::SacCer2::Gold
- ::find_all_by_interval — Bio::Ucsc::SacCer2::IntronEst
- ::find_all_by_interval — Bio::Ucsc::SacCer2::Mrna
- ::find_all_by_interval — Bio::Ucsc::SacCer2::T2micron_est
- ::find_all_by_interval — Bio::Ucsc::SacCer2::T2micron_gap
- ::find_all_by_interval — Bio::Ucsc::SacCer2::T2micron_gold
- ::find_all_by_interval — Bio::Ucsc::SacCer2::T2micron_intronEst
- ::find_all_by_interval — Bio::Ucsc::SacCer2::T2micron_mrna
- ::find_all_by_interval — Bio::Ucsc::SusScr2::Est
- ::find_all_by_interval — Bio::Ucsc::SusScr2::IntronEst
- ::find_all_by_interval — Bio::Ucsc::SusScr2::Mrna
- ::find_all_by_interval — Bio::Ucsc::TaeGut1::ChainGalGal3
- ::find_all_by_interval — Bio::Ucsc::TaeGut1::ChainGalGal3Link
- ::find_all_by_interval — Bio::Ucsc::TaeGut1::Est
- ::find_all_by_interval — Bio::Ucsc::TaeGut1::Gap
- ::find_all_by_interval — Bio::Ucsc::TaeGut1::Gold
- ::find_all_by_interval — Bio::Ucsc::TaeGut1::IntronEst
- ::find_all_by_interval — Bio::Ucsc::TaeGut1::Mrna
- ::find_all_by_interval — Bio::Ucsc::TaeGut1::Rmsk
- ::find_all_by_interval — Bio::Ucsc::TetNig2::Mrna
- ::find_by_interval — Bio::Ucsc::AnoGam1::ChainDm3
- ::find_by_interval — Bio::Ucsc::AnoGam1::ChainDm3Link
- ::find_by_interval — Bio::Ucsc::AnoGam1::Est
- ::find_by_interval — Bio::Ucsc::AnoGam1::Gap
- ::find_by_interval — Bio::Ucsc::AnoGam1::Gold
- ::find_by_interval — Bio::Ucsc::AnoGam1::IntronEst
- ::find_by_interval — Bio::Ucsc::AnoGam1::Mrna
- ::find_by_interval — Bio::Ucsc::AnoGam1::Rmsk
- ::find_by_interval — Bio::Ucsc::ApiMel2::ChainDm2
- ::find_by_interval — Bio::Ucsc::ApiMel2::ChainDm2Link
- ::find_by_interval — Bio::Ucsc::BraFlo1::ChainGalGal3
- ::find_by_interval — Bio::Ucsc::BraFlo1::ChainGalGal3Link
- ::find_by_interval — Bio::Ucsc::BraFlo1::ChainHg18
- ::find_by_interval — Bio::Ucsc::BraFlo1::ChainHg18Link
- ::find_by_interval — Bio::Ucsc::BraFlo1::ChainMm9
- ::find_by_interval — Bio::Ucsc::BraFlo1::ChainMm9Link
- ::find_by_interval — Bio::Ucsc::BraFlo1::ChainPetMar1
- ::find_by_interval — Bio::Ucsc::BraFlo1::ChainPetMar1Link
- ::find_by_interval — Bio::Ucsc::BraFlo1::Gap
- ::find_by_interval — Bio::Ucsc::BraFlo1::Gold
- ::find_by_interval — Bio::Ucsc::CaeJap1::ChainCe6
- ::find_by_interval — Bio::Ucsc::CaeJap1::ChainCe6Link
- ::find_by_interval — Bio::Ucsc::CaeJap1::Gap
- ::find_by_interval — Bio::Ucsc::CaeJap1::Gold
- ::find_by_interval — Bio::Ucsc::CaePb2::ChainCe6
- ::find_by_interval — Bio::Ucsc::CaePb2::ChainCe6Link
- ::find_by_interval — Bio::Ucsc::CaePb2::Gap
- ::find_by_interval — Bio::Ucsc::CaePb2::Gold
- ::find_by_interval — Bio::Ucsc::CaeRem3::ChainCe6
- ::find_by_interval — Bio::Ucsc::CaeRem3::ChainCe6Link
- ::find_by_interval — Bio::Ucsc::CaeRem3::Gap
- ::find_by_interval — Bio::Ucsc::CaeRem3::Gold
- ::find_by_interval — Bio::Ucsc::CanFam2::ChainBosTau4
- ::find_by_interval — Bio::Ucsc::CanFam2::ChainBosTau4Link
- ::find_by_interval — Bio::Ucsc::CanFam2::ChainMm9
- ::find_by_interval — Bio::Ucsc::CanFam2::ChainMm9Link
- ::find_by_interval — Bio::Ucsc::CanFam2::ChainRn4
- ::find_by_interval — Bio::Ucsc::CanFam2::ChainRn4Link
- ::find_by_interval — Bio::Ucsc::CanFam2::ChainSelf
- ::find_by_interval — Bio::Ucsc::CanFam2::ChainSelfLink
- ::find_by_interval — Bio::Ucsc::CanFam2::Est
- ::find_by_interval — Bio::Ucsc::CanFam2::Gap
- ::find_by_interval — Bio::Ucsc::CanFam2::Gold
- ::find_by_interval — Bio::Ucsc::CanFam2::IntronEst
- ::find_by_interval — Bio::Ucsc::CanFam2::Mrna
- ::find_by_interval — Bio::Ucsc::CanFam2::Rmsk
- ::find_by_interval — Bio::Ucsc::Cb3::ChainCaePb1
- ::find_by_interval — Bio::Ucsc::Cb3::ChainCaePb1Link
- ::find_by_interval — Bio::Ucsc::Cb3::ChainCaeRem2
- ::find_by_interval — Bio::Ucsc::Cb3::ChainCaeRem2Link
- ::find_by_interval — Bio::Ucsc::Cb3::ChainCe6
- ::find_by_interval — Bio::Ucsc::Cb3::ChainCe6Link
- ::find_by_interval — Bio::Ucsc::Cb3::ChainPriPac1
- ::find_by_interval — Bio::Ucsc::Cb3::ChainPriPac1Link
- ::find_by_interval — Bio::Ucsc::Cb3::Est
- ::find_by_interval — Bio::Ucsc::Cb3::Gap
- ::find_by_interval — Bio::Ucsc::Cb3::Gold
- ::find_by_interval — Bio::Ucsc::Cb3::IntronEst
- ::find_by_interval — Bio::Ucsc::Cb3::Mrna
- ::find_by_interval — Bio::Ucsc::Cb3::Rmsk
- ::find_by_interval — Bio::Ucsc::Ce6::ChainCaeJap1
- ::find_by_interval — Bio::Ucsc::Ce6::ChainCaeJap1Link
- ::find_by_interval — Bio::Ucsc::Ce6::ChainCaePb2
- ::find_by_interval — Bio::Ucsc::Ce6::ChainCaePb2Link
- ::find_by_interval — Bio::Ucsc::Ce6::ChainCaeRem3
- ::find_by_interval — Bio::Ucsc::Ce6::ChainCaeRem3Link
- ::find_by_interval — Bio::Ucsc::Ce6::ChainCb3
- ::find_by_interval — Bio::Ucsc::Ce6::ChainCb3Link
- ::find_by_interval — Bio::Ucsc::Ce6::ChainPriPac1
- ::find_by_interval — Bio::Ucsc::Ce6::ChainPriPac1Link
- ::find_by_interval — Bio::Ucsc::Ce6::ChainSelf
- ::find_by_interval — Bio::Ucsc::Ce6::ChainSelfLink
- ::find_by_interval — Bio::Ucsc::Ce6::Est
- ::find_by_interval — Bio::Ucsc::Ce6::Gap
- ::find_by_interval — Bio::Ucsc::Ce6::Gold
- ::find_by_interval — Bio::Ucsc::Ce6::IntronEst
- ::find_by_interval — Bio::Ucsc::Ce6::Mrna
- ::find_by_interval — Bio::Ucsc::Ce6::Rmsk
- ::find_by_interval — Bio::Ucsc::Ce6::T25mersRepeats
- ::find_by_interval — Bio::Ucsc::Dm3::ChainAnoGam1
- ::find_by_interval — Bio::Ucsc::Dm3::ChainAnoGam1Link
- ::find_by_interval — Bio::Ucsc::Dm3::ChainApiMel3
- ::find_by_interval — Bio::Ucsc::Dm3::ChainApiMel3Link
- ::find_by_interval — Bio::Ucsc::Dm3::ChainDp3
- ::find_by_interval — Bio::Ucsc::Dm3::ChainDp3Link
- ::find_by_interval — Bio::Ucsc::Dm3::ChainDroAna2
- ::find_by_interval — Bio::Ucsc::Dm3::ChainDroAna2Link
- ::find_by_interval — Bio::Ucsc::Dm3::ChainDroEre1
- ::find_by_interval — Bio::Ucsc::Dm3::ChainDroEre1Link
- ::find_by_interval — Bio::Ucsc::Dm3::ChainDroPer1
- ::find_by_interval — Bio::Ucsc::Dm3::ChainDroPer1Link
- ::find_by_interval — Bio::Ucsc::Dm3::ChainDroSec1
- ::find_by_interval — Bio::Ucsc::Dm3::ChainDroSec1Link
- ::find_by_interval — Bio::Ucsc::Dm3::ChainDroSim1
- ::find_by_interval — Bio::Ucsc::Dm3::ChainDroSim1Link
- ::find_by_interval — Bio::Ucsc::Dm3::ChainDroYak2
- ::find_by_interval — Bio::Ucsc::Dm3::ChainDroYak2Link
- ::find_by_interval — Bio::Ucsc::Dm3::Est
- ::find_by_interval — Bio::Ucsc::Dm3::Gap
- ::find_by_interval — Bio::Ucsc::Dm3::Gold
- ::find_by_interval — Bio::Ucsc::Dm3::IntronEst
- ::find_by_interval — Bio::Ucsc::Dm3::Mrna
- ::find_by_interval — Bio::Ucsc::Dm3::Rmsk
- ::find_by_interval — Bio::Ucsc::Dp3::ChainDm3
- ::find_by_interval — Bio::Ucsc::Dp3::ChainDm3Link
- ::find_by_interval — Bio::Ucsc::Dp3::Est
- ::find_by_interval — Bio::Ucsc::Dp3::Gap
- ::find_by_interval — Bio::Ucsc::Dp3::Gold
- ::find_by_interval — Bio::Ucsc::Dp3::IntronEst
- ::find_by_interval — Bio::Ucsc::Dp3::Mrna
- ::find_by_interval — Bio::Ucsc::Dp3::Rmsk
- ::find_by_interval — Bio::Ucsc::DroSim1::ChainDm3
- ::find_by_interval — Bio::Ucsc::DroSim1::ChainDm3Link
- ::find_by_interval — Bio::Ucsc::DroSim1::Est
- ::find_by_interval — Bio::Ucsc::DroSim1::Gap
- ::find_by_interval — Bio::Ucsc::DroSim1::Gold
- ::find_by_interval — Bio::Ucsc::DroSim1::IntronEst
- ::find_by_interval — Bio::Ucsc::DroSim1::Mrna
- ::find_by_interval — Bio::Ucsc::DroSim1::Rmsk
- ::find_by_interval — Bio::Ucsc::DroYak2::ChainDm3
- ::find_by_interval — Bio::Ucsc::DroYak2::ChainDm3Link
- ::find_by_interval — Bio::Ucsc::DroYak2::Est
- ::find_by_interval — Bio::Ucsc::DroYak2::Gap
- ::find_by_interval — Bio::Ucsc::DroYak2::Gold
- ::find_by_interval — Bio::Ucsc::DroYak2::IntronEst
- ::find_by_interval — Bio::Ucsc::DroYak2::Mrna
- ::find_by_interval — Bio::Ucsc::DroYak2::Rmsk
- ::find_by_interval — Bio::Ucsc::EquCab2::Est
- ::find_by_interval — Bio::Ucsc::EquCab2::Gap
- ::find_by_interval — Bio::Ucsc::EquCab2::Gold
- ::find_by_interval — Bio::Ucsc::EquCab2::IntronEst
- ::find_by_interval — Bio::Ucsc::EquCab2::Mrna
- ::find_by_interval — Bio::Ucsc::EquCab2::Rmsk
- ::find_by_interval — Bio::Ucsc::Fr2::ChainGalGal3
- ::find_by_interval — Bio::Ucsc::Fr2::ChainGalGal3Link
- ::find_by_interval — Bio::Ucsc::Fr2::ChainGasAcu1
- ::find_by_interval — Bio::Ucsc::Fr2::ChainGasAcu1Link
- ::find_by_interval — Bio::Ucsc::Fr2::ChainMm9
- ::find_by_interval — Bio::Ucsc::Fr2::ChainMm9Link
- ::find_by_interval — Bio::Ucsc::Fr2::ChainOryLat2
- ::find_by_interval — Bio::Ucsc::Fr2::ChainOryLat2Link
- ::find_by_interval — Bio::Ucsc::Fr2::Est
- ::find_by_interval — Bio::Ucsc::Fr2::Gap
- ::find_by_interval — Bio::Ucsc::Fr2::Gold
- ::find_by_interval — Bio::Ucsc::Fr2::IntronEst
- ::find_by_interval — Bio::Ucsc::Fr2::Mrna
- ::find_by_interval — Bio::Ucsc::Fr2::Rmsk
- ::find_by_interval — Bio::Ucsc::GasAcu1::ChainAnoCar1
- ::find_by_interval — Bio::Ucsc::GasAcu1::ChainAnoCar1Link
- ::find_by_interval — Bio::Ucsc::GasAcu1::ChainFr2
- ::find_by_interval — Bio::Ucsc::GasAcu1::ChainFr2Link
- ::find_by_interval — Bio::Ucsc::GasAcu1::ChainGalGal3
- ::find_by_interval — Bio::Ucsc::GasAcu1::ChainGalGal3Link
- ::find_by_interval — Bio::Ucsc::GasAcu1::ChainMm9
- ::find_by_interval — Bio::Ucsc::GasAcu1::ChainMm9Link
- ::find_by_interval — Bio::Ucsc::GasAcu1::ChainOryLat2
- ::find_by_interval — Bio::Ucsc::GasAcu1::ChainOryLat2Link
- ::find_by_interval — Bio::Ucsc::GasAcu1::Est
- ::find_by_interval — Bio::Ucsc::GasAcu1::IntronEst
- ::find_by_interval — Bio::Ucsc::GasAcu1::Mrna
- ::find_by_interval — Bio::Ucsc::GasAcu1::Rmsk
- ::find_by_interval — Bio::Ucsc::Hg18::ChainAnoCar1
- ::find_by_interval — Bio::Ucsc::Hg18::ChainBosTau4
- ::find_by_interval — Bio::Ucsc::Hg18::ChainBraFlo1
- ::find_by_interval — Bio::Ucsc::Hg18::ChainCalJac1
- ::find_by_interval — Bio::Ucsc::Hg18::ChainCanFam2
- ::find_by_interval — Bio::Ucsc::Hg18::ChainCavPor3
- ::find_by_interval — Bio::Ucsc::Hg18::ChainDanRer5
- ::find_by_interval — Bio::Ucsc::Hg18::ChainEquCab1
- ::find_by_interval — Bio::Ucsc::Hg18::ChainFelCat3
- ::find_by_interval — Bio::Ucsc::Hg18::ChainFr2
- ::find_by_interval — Bio::Ucsc::Hg18::ChainGalGal3
- ::find_by_interval — Bio::Ucsc::Hg18::ChainGasAcu1
- ::find_by_interval — Bio::Ucsc::Hg18::ChainMm9
- ::find_by_interval — Bio::Ucsc::Hg18::ChainMonDom4
- ::find_by_interval — Bio::Ucsc::Hg18::ChainOrnAna1
- ::find_by_interval — Bio::Ucsc::Hg18::ChainOryLat2
- ::find_by_interval — Bio::Ucsc::Hg18::ChainPanTro2
- ::find_by_interval — Bio::Ucsc::Hg18::ChainPetMar1
- ::find_by_interval — Bio::Ucsc::Hg18::ChainPonAbe2
- ::find_by_interval — Bio::Ucsc::Hg18::ChainRheMac2
- ::find_by_interval — Bio::Ucsc::Hg18::ChainRn4
- ::find_by_interval — Bio::Ucsc::Hg18::ChainSelf
- ::find_by_interval — Bio::Ucsc::Hg18::ChainStrPur2
- ::find_by_interval — Bio::Ucsc::Hg18::ChainTaeGut1
- ::find_by_interval — Bio::Ucsc::Hg18::ChainTetNig2
- ::find_by_interval — Bio::Ucsc::Hg18::ChainXenTro2
- ::find_by_interval — Bio::Ucsc::Hg18::Gap
- ::find_by_interval — Bio::Ucsc::Hg18::Gold
- ::find_by_interval — Bio::Ucsc::Hg18::IntronEst
- ::find_by_interval — Bio::Ucsc::Hg18::Rmsk
- ::find_by_interval — Bio::Ucsc::Hg18::RmskRM327
- ::find_by_interval — Bio::Ucsc::Mm10::Est
- ::find_by_interval — Bio::Ucsc::Mm10::IntronEst
- ::find_by_interval — Bio::Ucsc::Mm10::Mrna
- ::find_by_interval — Bio::Ucsc::Mm9::ChainBraFlo1
- ::find_by_interval — Bio::Ucsc::Mm9::ChainBraFlo1Link
- ::find_by_interval — Bio::Ucsc::Mm9::ChainCanFam2
- ::find_by_interval — Bio::Ucsc::Mm9::ChainCanFam2Link
- ::find_by_interval — Bio::Ucsc::Mm9::ChainCavPor3
- ::find_by_interval — Bio::Ucsc::Mm9::ChainCavPor3Link
- ::find_by_interval — Bio::Ucsc::Mm9::ChainFr2
- ::find_by_interval — Bio::Ucsc::Mm9::ChainFr2Link
- ::find_by_interval — Bio::Ucsc::Mm9::ChainGalGal3
- ::find_by_interval — Bio::Ucsc::Mm9::ChainGalGal3Link
- ::find_by_interval — Bio::Ucsc::Mm9::ChainGasAcu1
- ::find_by_interval — Bio::Ucsc::Mm9::ChainGasAcu1Link
- ::find_by_interval — Bio::Ucsc::Mm9::ChainOrnAna1
- ::find_by_interval — Bio::Ucsc::Mm9::ChainOrnAna1Link
- ::find_by_interval — Bio::Ucsc::Mm9::ChainOryLat2
- ::find_by_interval — Bio::Ucsc::Mm9::ChainOryLat2Link
- ::find_by_interval — Bio::Ucsc::Mm9::ChainPetMar1
- ::find_by_interval — Bio::Ucsc::Mm9::ChainPetMar1Link
- ::find_by_interval — Bio::Ucsc::Mm9::ChainPonAbe2
- ::find_by_interval — Bio::Ucsc::Mm9::ChainPonAbe2Link
- ::find_by_interval — Bio::Ucsc::Mm9::ChainRheMac2
- ::find_by_interval — Bio::Ucsc::Mm9::ChainRheMac2Link
- ::find_by_interval — Bio::Ucsc::Mm9::ChainRn4
- ::find_by_interval — Bio::Ucsc::Mm9::ChainRn4Link
- ::find_by_interval — Bio::Ucsc::Mm9::Est
- ::find_by_interval — Bio::Ucsc::Mm9::Gap
- ::find_by_interval — Bio::Ucsc::Mm9::Gold
- ::find_by_interval — Bio::Ucsc::Mm9::IntronEst
- ::find_by_interval — Bio::Ucsc::Mm9::Mrna
- ::find_by_interval — Bio::Ucsc::Mm9::Rmsk
- ::find_by_interval — Bio::Ucsc::PonAbe2::ChainMm9
- ::find_by_interval — Bio::Ucsc::PonAbe2::ChainMm9Link
- ::find_by_interval — Bio::Ucsc::PonAbe2::ChainOrnAna1
- ::find_by_interval — Bio::Ucsc::PonAbe2::ChainOrnAna1Link
- ::find_by_interval — Bio::Ucsc::PonAbe2::ChainRheMac2
- ::find_by_interval — Bio::Ucsc::PonAbe2::ChainRheMac2Link
- ::find_by_interval — Bio::Ucsc::PonAbe2::Est
- ::find_by_interval — Bio::Ucsc::PonAbe2::Gap
- ::find_by_interval — Bio::Ucsc::PonAbe2::Gold
- ::find_by_interval — Bio::Ucsc::PonAbe2::IntronEst
- ::find_by_interval — Bio::Ucsc::PonAbe2::Mrna
- ::find_by_interval — Bio::Ucsc::PonAbe2::Rmsk
- ::find_by_interval — Bio::Ucsc::PriPac1::ChainCaePb1
- ::find_by_interval — Bio::Ucsc::PriPac1::ChainCaePb1Link
- ::find_by_interval — Bio::Ucsc::PriPac1::ChainCaeRem2
- ::find_by_interval — Bio::Ucsc::PriPac1::ChainCaeRem2Link
- ::find_by_interval — Bio::Ucsc::PriPac1::ChainCb3
- ::find_by_interval — Bio::Ucsc::PriPac1::ChainCb3Link
- ::find_by_interval — Bio::Ucsc::PriPac1::ChainCe6
- ::find_by_interval — Bio::Ucsc::PriPac1::ChainCe6Link
- ::find_by_interval — Bio::Ucsc::PriPac1::Gap
- ::find_by_interval — Bio::Ucsc::PriPac1::Gold
- ::find_by_interval — Bio::Ucsc::PriPac1::Rmsk
- ::find_by_interval — Bio::Ucsc::RheMac2::ChainMm9
- ::find_by_interval — Bio::Ucsc::RheMac2::ChainMm9Link
- ::find_by_interval — Bio::Ucsc::RheMac2::ChainPonAbe2
- ::find_by_interval — Bio::Ucsc::RheMac2::ChainPonAbe2Link
- ::find_by_interval — Bio::Ucsc::RheMac2::ChainRn4
- ::find_by_interval — Bio::Ucsc::RheMac2::ChainRn4Link
- ::find_by_interval — Bio::Ucsc::Rn4::ChainCanFam2
- ::find_by_interval — Bio::Ucsc::Rn4::ChainCanFam2Link
- ::find_by_interval — Bio::Ucsc::Rn4::ChainCavPor3
- ::find_by_interval — Bio::Ucsc::Rn4::ChainCavPor3Link
- ::find_by_interval — Bio::Ucsc::Rn4::ChainDanRer4
- ::find_by_interval — Bio::Ucsc::Rn4::ChainDanRer4Link
- ::find_by_interval — Bio::Ucsc::Rn4::ChainEquCab1
- ::find_by_interval — Bio::Ucsc::Rn4::ChainEquCab1Link
- ::find_by_interval — Bio::Ucsc::Rn4::ChainGalGal3
- ::find_by_interval — Bio::Ucsc::Rn4::ChainGalGal3Link
- ::find_by_interval — Bio::Ucsc::Rn4::ChainMm9
- ::find_by_interval — Bio::Ucsc::Rn4::ChainMm9Link
- ::find_by_interval — Bio::Ucsc::Rn4::ChainMonDom4
- ::find_by_interval — Bio::Ucsc::Rn4::ChainMonDom4Link
- ::find_by_interval — Bio::Ucsc::Rn4::ChainPanTro2
- ::find_by_interval — Bio::Ucsc::Rn4::ChainPanTro2Link
- ::find_by_interval — Bio::Ucsc::Rn4::ChainRheMac2
- ::find_by_interval — Bio::Ucsc::Rn4::ChainRheMac2Link
- ::find_by_interval — Bio::Ucsc::Rn4::Est
- ::find_by_interval — Bio::Ucsc::Rn4::Gap
- ::find_by_interval — Bio::Ucsc::Rn4::Gold
- ::find_by_interval — Bio::Ucsc::Rn4::IntronEst
- ::find_by_interval — Bio::Ucsc::Rn4::Mrna
- ::find_by_interval — Bio::Ucsc::Rn4::Rmsk
- ::find_by_interval — Bio::Ucsc::SacCer2::Est
- ::find_by_interval — Bio::Ucsc::SacCer2::Gap
- ::find_by_interval — Bio::Ucsc::SacCer2::Gold
- ::find_by_interval — Bio::Ucsc::SacCer2::IntronEst
- ::find_by_interval — Bio::Ucsc::SacCer2::Mrna
- ::find_by_interval — Bio::Ucsc::SacCer2::T2micron_est
- ::find_by_interval — Bio::Ucsc::SacCer2::T2micron_gap
- ::find_by_interval — Bio::Ucsc::SacCer2::T2micron_gold
- ::find_by_interval — Bio::Ucsc::SacCer2::T2micron_intronEst
- ::find_by_interval — Bio::Ucsc::SacCer2::T2micron_mrna
- ::find_by_interval — Bio::Ucsc::SusScr2::Est
- ::find_by_interval — Bio::Ucsc::SusScr2::IntronEst
- ::find_by_interval — Bio::Ucsc::SusScr2::Mrna
- ::find_by_interval — Bio::Ucsc::TaeGut1::ChainGalGal3
- ::find_by_interval — Bio::Ucsc::TaeGut1::ChainGalGal3Link
- ::find_by_interval — Bio::Ucsc::TaeGut1::Est
- ::find_by_interval — Bio::Ucsc::TaeGut1::Gap
- ::find_by_interval — Bio::Ucsc::TaeGut1::Gold
- ::find_by_interval — Bio::Ucsc::TaeGut1::IntronEst
- ::find_by_interval — Bio::Ucsc::TaeGut1::Mrna
- ::find_by_interval — Bio::Ucsc::TaeGut1::Rmsk
- ::find_by_interval — Bio::Ucsc::TetNig2::Mrna
- ::find_first_or_all_by_interval — Bio::Ucsc::Ce6::T25mersRepeats
- ::find_first_or_all_by_interval — Bio::Ucsc::SacCer2::T2micron_est
- ::find_first_or_all_by_interval — Bio::Ucsc::SacCer2::T2micron_gap
- ::find_first_or_all_by_interval — Bio::Ucsc::SacCer2::T2micron_gold
- ::find_first_or_all_by_interval — Bio::Ucsc::SacCer2::T2micron_intronEst
- ::find_first_or_all_by_interval — Bio::Ucsc::SacCer2::T2micron_mrna
- ::load — Bio::Ucsc::File::Twobit
- ::load — Bio::Ucsc::Schema::Joiner
- ::new — Bio::Ucsc::File::ByteQueue
- ::new — Bio::Ucsc::File::Twobit
- ::new — Bio::Ucsc::Schema::Joiner
- ::new — Bio::Ucsc::Schema::Variables
- ::new — Bio::Ucsc::Schema::Identifier
- ::open — Bio::Ucsc::File::Twobit
- ::wrap — Bio::Ucsc::Gi
- #[] — Bio::Ucsc::Schema::Variables
- #[]= — Bio::Ucsc::Schema::Variables
- #bed — Bio::Ucsc::TableClassDetector
- #bin — Bio::GenomicInterval
- #bin_all — Bio::GenomicInterval
- #byte_to_nucleotides — Bio::Ucsc::File::Twobit
- #bytes_to_nucleotides — Bio::Ucsc::File::Twobit
- #class_to_table — Bio::Ucsc::Schema::Joiner
- #const_missing — Bio::Ucsc::TableClassDetector
- #define_association — Bio::Ucsc::Schema::Joiner
- #define_association_by_pkey_referer — Bio::Ucsc::Schema::Joiner
- #delete_reserved_methods — Bio::Ucsc::TableClassDetector
- #downhead — Bio::Ucsc::TableClassDetector
- #find_association — Bio::Ucsc::Schema::Joiner
- #find_by_interval — Bio::Ucsc::File::Twobit
- #find_by_interval_raw — Bio::Ucsc::File::Twobit
- #genepred — Bio::Ucsc::TableClassDetector
- #generic — Bio::Ucsc::TableClassDetector
- #identifiers — Bio::Ucsc::Schema::Joiner
- #identifiers_by_primary_table — Bio::Ucsc::Schema::Joiner
- #inspect — Bio::Ucsc::File::Twobit
- #next — Bio::Ucsc::File::ByteQueue
- #parse — Bio::Ucsc::Schema::Joiner
- #psl — Bio::Ucsc::TableClassDetector
- #records — Bio::Ucsc::File::Twobit
- #remove_indent — Bio::Ucsc::Schema::Joiner
- #rmsk — Bio::Ucsc::TableClassDetector
- #solve_id_by_ptable — Bio::Ucsc::Schema::Joiner
- #solve_primary_key — Bio::Ucsc::Schema::Joiner
- #solved_identifiers_by_primary_table — Bio::Ucsc::Schema::Joiner
- #subseq — Bio::Ucsc::File::Twobit
- #table_to_class — Bio::Ucsc::Schema::Joiner
- #uphead — Bio::Ucsc::TableClassDetector
- #variables — Bio::Ucsc::Schema::Joiner
- #variables= — Bio::Ucsc::Schema::Joiner