class CagnutBwa::Base
Public Instance Methods
aln(dirs, order, previous_job_id, input = nil)
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# File lib/cagnut_bwa/base.rb, line 9 def aln dirs, order, previous_job_id, input = nil opts = { input: input, dirs: dirs, order: order } CagnutBwa::Aln.new(opts).run previous_job_id end
aln_one_fastq(dirs, order, input = nil)
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# File lib/cagnut_bwa/base.rb, line 19 def aln_one_fastq dirs, order, input = nil opts = { input: input, dirs: dirs, order: order } CagnutBwa::AlnOneFastq.new(opts).run end
mem(dirs, order, input = nil)
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# File lib/cagnut_bwa/base.rb, line 29 def mem dirs, order, input = nil opts = { input: input, dirs: dirs, order: order } CagnutBwa::Mem.new(opts).run end
samp(dirs, order, previous_job_id = nil, input = nil)
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# File lib/cagnut_bwa/base.rb, line 14 def samp dirs, order, previous_job_id = nil, input = nil opts = { input: input, dirs: dirs, order: order } CagnutBwa::Samp.new(opts).run previous_job_id end
samp_one_fastq(dirs, order, previous_job_id = nil, input = nil)
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# File lib/cagnut_bwa/base.rb, line 24 def samp_one_fastq dirs, order, previous_job_id = nil, input = nil opts = { input: input, dirs: dirs, order: order } CagnutBwa::SampOneFastq.new(opts).run previous_job_id end