Table of Contents - cagnut_bwa-0.3.4 Documentation
Pages
Classes and Modules
- CagnutBwa
- CagnutBwa::Aln
- CagnutBwa::AlnOneFastq
- CagnutBwa::Base
- CagnutBwa::CheckTools
- CagnutBwa::Configuration
- CagnutBwa::Mem
- CagnutBwa::Samp
- CagnutBwa::SampOneFastq
- CagnutBwa::Util
Methods
- ::config — CagnutBwa
- ::load — CagnutBwa::Configuration
- ::new — CagnutBwa::Aln
- ::new — CagnutBwa::AlnOneFastq
- ::new — CagnutBwa::Mem
- ::new — CagnutBwa::Samp
- ::new — CagnutBwa::Util
- #add_bwa_path_in_params — CagnutBwa::Configuration
- #aln — CagnutBwa::Base
- #aln — CagnutBwa::Util
- #aln_one_fastq — CagnutBwa::Base
- #aln_one_fastq — CagnutBwa::Util
- #aln_params_for_r1 — CagnutBwa::Aln
- #aln_params_for_r1 — CagnutBwa::AlnOneFastq
- #aln_params_for_r2 — CagnutBwa::Aln
- #aln_params_for_r2 — CagnutBwa::AlnOneFastq
- #attributes — CagnutBwa::Configuration
- #bwa_samp_one_fastq — CagnutBwa::SampOneFastq
- #check_bwa — CagnutBwa::CheckTools
- #check_bwa_index — CagnutBwa::CheckTools
- #check_ref_related — CagnutBwa::CheckTools
- #check_tool — CagnutBwa::CheckTools
- #fetch_filename — CagnutBwa::Aln
- #fetch_filename — CagnutBwa::AlnOneFastq
- #fetch_filename — CagnutBwa::Mem
- #fetch_filename — CagnutBwa::Samp
- #fetch_filename — CagnutBwa::SampOneFastq
- #generate_rg_str — CagnutBwa::Configuration
- #generate_script — CagnutBwa::Aln
- #generate_script — CagnutBwa::AlnOneFastq
- #generate_script — CagnutBwa::Mem
- #generate_script — CagnutBwa::Samp
- #generate_script — CagnutBwa::SampOneFastq
- #initizaline — CagnutBwa::SampOneFastq
- #job_params — CagnutBwa::Aln
- #job_params — CagnutBwa::Mem
- #job_params — CagnutBwa::Samp
- #job_params — CagnutBwa::SampOneFastq
- #load — CagnutBwa::Configuration
- #mem — CagnutBwa::Base
- #mem — CagnutBwa::Util
- #mem_options — CagnutBwa::Mem
- #queuing_options — CagnutBwa::Aln
- #queuing_options — CagnutBwa::AlnOneFastq
- #queuing_options — CagnutBwa::Mem
- #queuing_options — CagnutBwa::Samp
- #queuing_options — CagnutBwa::SampOneFastq
- #run — CagnutBwa::Aln
- #run — CagnutBwa::AlnOneFastq
- #run — CagnutBwa::Mem
- #run — CagnutBwa::Samp
- #run — CagnutBwa::SampOneFastq
- #samp — CagnutBwa::Base
- #samp — CagnutBwa::Util
- #samp_one_fastq — CagnutBwa::Base
- #samp_one_fastq — CagnutBwa::Util
- #samp_one_fastq_options — CagnutBwa::SampOneFastq
- #samp_options — CagnutBwa::Samp
- #samse_one_fastq_options — CagnutBwa::SampOneFastq