class CagnutBwa::Base

Public Instance Methods

aln(dirs, order, previous_job_id, input = nil) click to toggle source
# File lib/cagnut_bwa/base.rb, line 9
def aln dirs, order, previous_job_id, input = nil
  opts = { input: input, dirs: dirs, order: order  }
  CagnutBwa::Aln.new(opts).run previous_job_id
end
aln_one_fastq(dirs, order, input = nil) click to toggle source
# File lib/cagnut_bwa/base.rb, line 19
def aln_one_fastq dirs, order, input = nil
  opts = { input: input, dirs: dirs, order: order  }
  CagnutBwa::AlnOneFastq.new(opts).run
end
mem(dirs, order, input = nil) click to toggle source
# File lib/cagnut_bwa/base.rb, line 29
def mem dirs, order, input = nil
  opts = { input: input, dirs: dirs, order: order }
  CagnutBwa::Mem.new(opts).run
end
samp(dirs, order, previous_job_id = nil, input = nil) click to toggle source
# File lib/cagnut_bwa/base.rb, line 14
def samp dirs, order, previous_job_id = nil, input = nil
  opts = { input: input, dirs: dirs, order: order  }
  CagnutBwa::Samp.new(opts).run previous_job_id
end
samp_one_fastq(dirs, order, previous_job_id = nil, input = nil) click to toggle source
# File lib/cagnut_bwa/base.rb, line 24
def samp_one_fastq dirs, order, previous_job_id = nil, input = nil
  opts = { input: input, dirs: dirs, order: order  }
  CagnutBwa::SampOneFastq.new(opts).run previous_job_id
end