class CagnutBwa::Util
Attributes
bwa[RW]
config[RW]
Public Class Methods
new(config)
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# File lib/cagnut_bwa/util.rb, line 5 def initialize config @config = config @bwa = CagnutBwa::Base.new end
Public Instance Methods
aln(dirs, order=1, previous_job_id = nil, filename=nil)
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# File lib/cagnut_bwa/util.rb, line 20 def aln dirs, order=1, previous_job_id = nil, filename=nil job_name = bwa.aln dirs, order, previous_job_id, filename [job_name, order+1] end
aln_one_fastq(dirs, order=1, filename=nil)
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# File lib/cagnut_bwa/util.rb, line 10 def aln_one_fastq dirs, order=1, filename=nil job_name = bwa.aln_one_fastq dirs, order, filename [job_name, order+1] end
mem(dirs, order=1, filename = nil)
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# File lib/cagnut_bwa/util.rb, line 30 def mem dirs, order=1, filename = nil job_name, filename = bwa.mem dirs, order, filename [job_name, filename, order+1] end
samp(dirs, order=1, previous_job_id=nil, filename=nil)
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# File lib/cagnut_bwa/util.rb, line 25 def samp dirs, order=1, previous_job_id=nil, filename=nil job_name, filename = bwa.samp dirs, order, previous_job_id, filename [job_name, filename, order+1] end
samp_one_fastq(dirs, order=1, previous_job_id=nil, filename=nil)
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# File lib/cagnut_bwa/util.rb, line 15 def samp_one_fastq dirs, order=1, previous_job_id=nil, filename=nil job_name, filename = bwa.samp_one_fastq dirs, order, previous_job_id, filename [job_name, filename, order+1] end