<?xml version=“1.0” encoding=“UTF-8”?> <MolecularSequence xmlns=“hl7.org/fhir”>

  <id value="fda-vcfeval-comparison"/>
  <meta>
  <security>
    <system value="http://terminology.hl7.org/CodeSystem/v3-ActReason"/>
    <code value="HTEST"/>
    <display value="test health data"/>
  </security>
</meta>
<coordinateSystem value="1"/>
  <patient>
      <reference value="Patient/example"/>
  </patient>
  <referenceSeq>
      <referenceSeqId>
        <coding>
          <system value="http://www.ncbi.nlm.nih.gov/nuccore"/>
          <code value="NC_000001.11"/>
        </coding>
      </referenceSeqId>
      <strand value="watson"/>
      <windowStart value="10453"/>
      <windowEnd value="101770080"/>
  </referenceSeq>
  <variant>
      <start value="13116"/>
      <end value="13117"/>
      <observedAllele value="T"/>
      <referenceAllele value="G"/>
  </variant>
  <quality>
      <type value="indel"/>
      <standardSequence>
          <coding>
              <system value="https://precision.fda.gov/files/"/>
              <code value="file-BkZxBZ00bpJVk2q6x43b1YBx"/>
          </coding>
      </standardSequence>
      <start value="10453"/>
      <end value="101770080"/>
      <method>
          <coding>
              <system value="https://precision.fda.gov/apps/"/>
              <code value="app-BxfGF8j02pBZzZxbzZxP725P"/>
          </coding>
          <text value="Vcfeval + Hap.py Comparison"/>
      </method>
      <truthTP value="7749"/>
      <truthFN value="2554"/>
      <queryFP value="10670"/>
      <gtFP value="2186"/>
      <precision value="0.428005"/>
      <recall value="0.752111"/>
  </quality>
  <quality>
      <type value="snp"/>
      <standardSequence>
          <coding>
              <system value="https://precision.fda.gov/files/"/>
              <code value="file-BkZxBZ00bpJVk2q6x43b1YBx"/>
          </coding>
      </standardSequence>
      <start value="10453"/>
      <end value="101770080"/>
      <method>
          <coding>
              <system value="https://precision.fda.gov/apps/"/>
              <code value="app-BxfGF8j02pBZzZxbzZxP725P"/>
          </coding>
          <text value="Vcfeval + Hap.py Comparison"/>
      </method>
      <truthTP value="92106"/>
      <truthFN value="1247"/>
      <queryFP value="21744"/>
      <gtFP value="493"/>
      <precision value="0.808602"/>
      <recall value="0.986642"/>
  </quality>
  <repository>
      <type value="login"/>
      <url value="https://precision.fda.gov/jobs/job-ByxYPx809jFVy21KJG74Jg3Y"/>
      <name value="FDA"/>
  </repository>

</MolecularSequence>