<?xml version=“1.0” encoding=“UTF-8”?> <MolecularSequence xmlns=“hl7.org/fhir”>
<id value="fda-vcfeval-comparison"/> <meta> <security> <system value="http://terminology.hl7.org/CodeSystem/v3-ActReason"/> <code value="HTEST"/> <display value="test health data"/> </security> </meta> <coordinateSystem value="1"/> <patient> <reference value="Patient/example"/> </patient> <referenceSeq> <referenceSeqId> <coding> <system value="http://www.ncbi.nlm.nih.gov/nuccore"/> <code value="NC_000001.11"/> </coding> </referenceSeqId> <strand value="watson"/> <windowStart value="10453"/> <windowEnd value="101770080"/> </referenceSeq> <variant> <start value="13116"/> <end value="13117"/> <observedAllele value="T"/> <referenceAllele value="G"/> </variant> <quality> <type value="indel"/> <standardSequence> <coding> <system value="https://precision.fda.gov/files/"/> <code value="file-BkZxBZ00bpJVk2q6x43b1YBx"/> </coding> </standardSequence> <start value="10453"/> <end value="101770080"/> <method> <coding> <system value="https://precision.fda.gov/apps/"/> <code value="app-BxfGF8j02pBZzZxbzZxP725P"/> </coding> <text value="Vcfeval + Hap.py Comparison"/> </method> <truthTP value="7749"/> <truthFN value="2554"/> <queryFP value="10670"/> <gtFP value="2186"/> <precision value="0.428005"/> <recall value="0.752111"/> </quality> <quality> <type value="snp"/> <standardSequence> <coding> <system value="https://precision.fda.gov/files/"/> <code value="file-BkZxBZ00bpJVk2q6x43b1YBx"/> </coding> </standardSequence> <start value="10453"/> <end value="101770080"/> <method> <coding> <system value="https://precision.fda.gov/apps/"/> <code value="app-BxfGF8j02pBZzZxbzZxP725P"/> </coding> <text value="Vcfeval + Hap.py Comparison"/> </method> <truthTP value="92106"/> <truthFN value="1247"/> <queryFP value="21744"/> <gtFP value="493"/> <precision value="0.808602"/> <recall value="0.986642"/> </quality> <repository> <type value="login"/> <url value="https://precision.fda.gov/jobs/job-ByxYPx809jFVy21KJG74Jg3Y"/> <name value="FDA"/> </repository>
</MolecularSequence>