Table of Contents - iroki-0.0.36 Documentation
Classes and Modules
- Bio
- Bio::Newick
- Bio::Tree
- Iroki
- Iroki::Biom
- Iroki::Color
- Iroki::Color::Gradient
- Iroki::Color::Palette
- Iroki::Color::SingleGroupGradient
- Iroki::Color::TwoGroupGradient
- Iroki::Const
- Iroki::CoreExt
- Iroki::CoreExt::File
- Iroki::CoreExt::Hash
- Iroki::CoreExt::String
- Iroki::Main
- Iroki::Tree
- Iroki::Utils
- Object
Methods
- ::change_names — Iroki::Tree
- ::combine_hashes — Iroki::Tree
- ::default_color_tag — Iroki::Color
- ::default_color_tag= — Iroki::Color
- ::get_tag — Iroki::Color
- ::gsub_iroki_newick_string — Iroki::Tree
- ::iroki_job — Iroki::Main
- ::iroki_name — Iroki::Tree
- ::iroki_to_color — Iroki::Tree
- ::main — Iroki::Main
- ::new — Iroki::Color::SingleGroupGradient
- ::new — Iroki::Color::TwoGroupGradient
- ::quoted_vals — Iroki::Tree
- ::tag_from_color — Iroki::Color
- ::tag_from_hex — Iroki::Color
- #__parse_newick_tokenize — Bio::Newick
- #__to_newick_format_label — Bio::Tree
- #add_color_to_leaf_branch — Iroki::Utils
- #already_checked? — Iroki::CoreExt::String
- #branch_tag? — Object
- #calc_hex_codes — Iroki::Color::TwoGroupGradient
- #check_file — Iroki::CoreExt::File
- #clean — Iroki::CoreExt::String
- #clean_name — Iroki::CoreExt::String
- #clean_strict — Iroki::CoreExt::String
- #color_given? — Object
- #color_nodes — Iroki::Utils
- #counts_to_rabunds — Iroki::Color::Gradient
- #duplicate_values? — Iroki::CoreExt::Hash
- #get_color — Iroki::Utils
- #has_color? — Iroki::CoreExt::String
- #has_single_quote? — Iroki::CoreExt::String
- #hex? — Iroki::CoreExt::String
- #hex_code — Iroki::Color::TwoGroupGradient
- #label_tag? — Object
- #leaf? — Iroki::Utils
- #lumin_level — Iroki::Color::TwoGroupGradient
- #mix_percent — Iroki::Color::TwoGroupGradient
- #parse — Iroki::Biom
- #parse_color_map_iroki — Iroki::CoreExt::File
- #parse_name_map — Iroki::CoreExt::File
- #patterns — Iroki::Color::Gradient
- #percent_of_group1_color — Iroki::Color::TwoGroupGradient
- #rabunds_to_lumins — Iroki::Color::Gradient
- #scale — Iroki::Color::Gradient
- #scale_reverse — Iroki::Color::Gradient
- #single_color_gradient_hex_codes — Iroki::Color::SingleGroupGradient
- #single_quote — Iroki::CoreExt::String
- #two_color_gradient_hex_codes — Iroki::Color::SingleGroupGradient
- #valid_newick? — Iroki::CoreExt::File
- #valid_numerical_val? — Object