class PeptideMod

Attributes

amino_acid[RW]
mass[RW]
position[RW]

Fully Modified Sequence

Public Class Methods

from_data(position,amino_acid,mass) click to toggle source
# File lib/protk/peptide_mod.rb, line 27
def from_data(position,amino_acid,mass)
        pepmod = new()
        pepmod.position = position
        pepmod.amino_acid = amino_acid
        pepmod.mass = mass
        pepmod
end
from_protxml(xmlnode) click to toggle source

<modification_info modified_peptide=“GFGFVTYSC[160]VEEVDAAMCARPHK”> <mod_aminoacid_mass position=“9” mass=“160.030600”/> <mod_aminoacid_mass position=“18” mass=“160.030600”/> </modification_info>

# File lib/protk/peptide_mod.rb, line 20
def from_protxml(xmlnode)
        pepmod = new()
        pepmod.position=xmlnode['position'].to_i
        pepmod.mass=xmlnode['mass'].to_f
        pepmod
end
new() click to toggle source
# File lib/protk/peptide_mod.rb, line 38
def initialize()

end