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Makefile
ExecutePipeline.trf
FeatureFinderCentroided.ini
FeatureFinderIsotopeWavelet.ini
apt-get_packages.yaml
brew_packages.yaml
galaxyenv.sh
predefined_db.crap.yaml
predefined_db.sphuman.yaml
predefined_db.swissprot_annotation.yaml
predefined_db.swissprot_fasta_annotation.yaml
tandem-style.css
tandem-style.xsl
tandem_gpm_defaults.xml
tandem_isb_kscore_defaults.xml
tandem_isb_native_defaults.xml
tandem_params.xml
taxonomy_template.xml
template_pep.xml
template_prot.xml
unimod.xml
uniprot_accessions.loc
uniprot_accessions_table
uniprot_input_accessions.loc
yum_packages.yaml
manage_db_rakefile.rake
setup_rakefile.rake
Class and Module Index
Bio
Bio::GFF
Bio::GFF::GFF3
Bio::GFF::GFF3::Record
Bio::SPTR
CommandRunner
Constants
ConvertUtil
Decoymaker
FastaDB
FastaDatabase
GFFDB
GalaxyStager
GalaxyUtil
GffToProteinDBTool
IndistinguishablePeptide
ManageDBTool
MascotUtil
MzIdentMLDoc
MzMLParser
OMSSAUtil
Object
OpenMSDefaults
PSM
PepXML
PepXMLWriter
Peptide
PeptideEvidence
PeptideMod
PeptideNotInProteinError
PlasmoDB
ProphetTool
ProtXMLToGFFTool
ProtXMLToGFFTool::CDSInfo
ProtXMLWriter
Protein
ProteinGroup
ProteinSummary
ProteinToGenomeMapper
ProtkError
Randomize
SearchTool
SetupTool
Sniffer
SpectrumQuery
String
SwissprotDatabase
TandemSearchTool
Tool
UniprotMapper
This is the API documentation for protk-1.4.4 Documentation.