class PeptideMod
Attributes
amino_acid[RW]
mass[RW]
position[RW]
Fully Modified Sequence
Public Class Methods
from_data(position,amino_acid,mass)
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# File lib/protk/peptide_mod.rb, line 27 def from_data(position,amino_acid,mass) pepmod = new() pepmod.position = position pepmod.amino_acid = amino_acid pepmod.mass = mass pepmod end
from_protxml(xmlnode)
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<modification_info modified_peptide=“GFGFVTYSC[160]VEEVDAAMCARPHK”> <mod_aminoacid_mass position=“9” mass=“160.030600”/> <mod_aminoacid_mass position=“18” mass=“160.030600”/> </modification_info>
# File lib/protk/peptide_mod.rb, line 20 def from_protxml(xmlnode) pepmod = new() pepmod.position=xmlnode['position'].to_i pepmod.mass=xmlnode['mass'].to_f pepmod end
new()
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# File lib/protk/peptide_mod.rb, line 38 def initialize() end