<!– ============================================================= –> <!– MODULE: Journal Publishing DTD with OASIS Tables –> <!– VERSION: ANSI/NISO JATS Version 1.0 (Z39.96-2012) –> <!– DATE: September 2014 –> <!– –> <!– ============================================================= –>
<!– ============================================================= –> <!– PUBLIC DOCUMENT TYPE DEFINITION –> <!– TYPICAL INVOCATION –> <!– “-//NLM//DTD JATS (Z39.96) Journal Publishing DTD with OASIS Tables v1.1d2 20140930//EN”
Delivered as file "JATS-journalpublishing-oasis-article1.dtd" -->
<!– ============================================================= –>
<!– ============================================================= –> <!– SYSTEM: Journal Publishing DTD with OASIS Tables –> <!– of the JATS DTD Suite –> <!– –> <!– PURPOSE: DTD for the creation of new journal articles. –> <!– This model is an extension of the Journal –> <!– Publishing DTD that contains both the XHTML –> <!– table and the CALS OASIS Exchange Table models. –> <!– –> <!– The Journal Publishing DTD is an application of –> <!– the ANSI/NISO Z39.96 Journal Publishing Tag Set. –> <!– It is a subset of the Journal Archiving and –> <!– Interchange DTD that is optimized for the –> <!– creation or publishing of existing journal –> <!– articles and some non-article material such as –> <!– product and book reviews in XML. It describes –> <!– both the metadata for a journal article and –> <!– the full content of the article. –>
<!– –> <!– This DTD was constructed using the modules in the –> <!– JATS DTD Suite. –> <!– –> <!– TAG SET SPONSOR –> <!– National Center for Biotechnology –> <!– Information (NCBI) –> <!– National Library of Medicine (NLM) –> <!– –> <!– CREATED FOR: –> <!– This DTD was created from the JATS DTD Suite. –> <!– Digital archives and publishers may use the –> <!– DTD as is for markup of journal literature or –> <!– related material for archiving and transferring –> <!– such material between archives or create a –> <!– custom XML DTD from the Suite for –> <!– these purposes. –> <!– –> <!– This DTD is in the public domain. An organization –> <!– that wishes to create its own DTD from the suite –> <!– may do so without permission from NLM. –> <!– –> <!– The suite has been set up to be extended using a –> <!– new DTD file and a new DTD-specific customization –> <!– module to redefine the many Parameter Entities. –> <!– Do not modify the suite directly or redistribute –> <!– modified versions of the suite. –> <!– –> <!– In the interest of maintaining consistency and –> <!– clarity for potential users, NLM requests: –> <!– –> <!– 1. If you create a DTD from the JATS DTD Suite –> <!– and intend to stay compatible with the suite, –> <!– then please include the following statement –> <!– as a comment in all of your DTD modules: –> <!– “Created from, and fully compatible with, –> <!– the ANSI/NISO Z39.96 Journal Article Tag –> <!– Suite (JATS).” –> <!– –> <!– 2. If you alter one or more modules of the suite, –> <!– then please rename your version and all its –> <!– modules to avoid any confusion with the –> <!– original suite. Also, please include the –> <!– following statement as a comment in all your –> <!– DTD modules: –> <!– “Based in part on, but not fully compatible –> <!– with, the ANSI/NISO Z39.96 Journal Article –> <!– Tag Suite (JATS).” –> <!– –> <!– ORIGINAL CREATION DATE: –> <!– February 2003 –> <!– –> <!– CREATED BY: Mulberry Technologies, Inc. for the NISO Z39.96 –> <!– Working Group. Mulberry Technologies was –> <!– supported by National Center for Biotechnology –> <!– Information (NCBI), a center of the US National –> <!– Library of Medicine (NLM). –> <!– –> <!– The Journal Publishing DTD is built from the –> <!– Archiving and Interchange DTD Suite. –> <!– –> <!– Suggestions for refinements and enhancements to –> <!– this DTD should be sent in email to: –> <!– jats@ncbi.nlm.nih.gov –> <!– ============================================================= –>
<!– ============================================================= –> <!– DTD VERSION/CHANGE HISTORY –> <!– ============================================================= –> <!–
Version Reason/Occasion (who) vx.x (yyyy-mm-dd)
============================================================= JATS Version 1.1d2 (DAL/BTU) v1.1d2 (2014-09-30) NISO JATS is a continuing maintenance NISO Standard, which requires voting by the NISO membership to be changed. This Committee Draft 1.1d2 will be sent to the NISO voting membership, to become (if approved) NISO JATS 1.1. This catalog represents an interim version of the non-normative JATS DTD Suite, as an indication to JATS users the decisions that have been made by the JATS Standing Committee. 23. <VOLUME> INSIDE <ARTICLE-META> and <FRONT-STUB> - Allowed <volume> to repeat inside <article-meta>, the types to be distinguished using @content-type - Added new optional element <volume-issue-group> inside <article-meta) following all volume and issue elements to hold volume-issue pairs (or n-tuples) when a second and subsequent <volume> has its own related issue information. - Made <issue> repeatable, for those who choose not to use the new wrapper element. 18. JATS became version "1.1d2" and "v1.1d2 20140930//EN" ============================================================= NISO JATS Version 1.1d1 (DAL/BTU) v1.1 (2013-11-15) ANSI/NISO Z39.96-2012 (pre-release for V1.0 BITS; Version 1.1) NISO JATS Standing Committee met and answered the requests and suggestions from the NISO request forms. Details concerning ANSI/NISO Z39.96-2012 JATS-based DTDs, XSDs, RNGs and supporting documentation are available at http://jats.nlm.nih.gov/1.1/ 17. DTD Version - Updated the DTD-version attribute to "1.1d1" and the formal public identifier to the date: "v1.1d1 20130915//EN". 16. GLOBAL ATTRIBUTES - Added the new module for Common (global) attributes: %JATS-common-atts.ent;, called in before the customizations models module. 15. GLOBAL ATTRIBUTES - Added the new parameter entity %jats-common-atts; to every element in this module. This PE adds (for now) the @id attribute and the @xml:base attribute to every element, whether metadata or narrative. Since the @id in this parameter entity is optional, a second parameter entity jats-common-atts-id-required was also added. The two are kept in sync with the jats-base-atts parameter entity. This added a new attribute list to: - back - front - front-stub 14. ABSTRACTS AND KEYWORDS - Changed "abstract*" to "(%abstract.class;)*" and "kwd-group*" to "(%kwd-group.class;)*" since those classes now exist. Elements should have a limited number of ways to be invoked. - front-stub (through %front-stub-model;) ============================================================= NISO JATS Version 1.0 (DAL/BTU) v1.0 (2012-xx-xx) ANSI/NISO Z39.96-2012 (Version 1.0) Details concerning ANSI/NISO Z39.96-2012 JATS-based DTDs, XSDs, RNGs and supporting documentation are available at http://jats.nlm.nih.gov/1.0/ 13. RELATED OBJECT - Added <related-object> everywhere <related-article> was used, including inside <front-stub> using front-stub-model. 12. OASIS NAMESPACE - Added the OASIS table namespace handling, which, by default, places a namespace prefix of "oasis" on the OASIS CALS Exchange Table Model. - Added call to JATS-oasis-namespace.ent 11. Updated the DTD-version attribute to "1.0" and the formal public identifier to the date: "v1.0 20120330//EN". ============================================================= Version 0.4 (DAL/BTU) v0.4 (2011-01-31) This Tag Set is in the process of becoming a NISO standard. The version numbers are starting over from 0.4", as a Trial Use Draft, to be made into "Version 1.0" when the Tag Suite becomes a NISO standard. Thus, the version number that would have been "NLM Version 3.1 Draft" has become NISO JATS "Version 0.4". Details on NISO Trial Use Draft Version 0.4 are available at http://jats.nlm.nih.gov/JATS-0.4. 10. Updated the DTD-version attribute to "0.4" 9. Updated the public identifier to "v0.4 20110131", modified the formal public identifier to include "JATS (Z39.96)", and the filename as delivered to include "JATS" and the new version number "0". 8. OASIS TABLES - Replaced the XHTML table model with the OASIS CALS exchange Table Model 7. BODY ATTRIBUTES - Added attribute list and new PE %body-atts; to the model of <body>. The only current attribute is @specific-use, which indicates, for example, not a real tagged XML body, but a 'bag of words" for indexing purposes. 6. I18N - Changed the default for @xml:lang from "en" to #IMPLIED, so that the @xml:lang would inherit properly and not need to be over-ridden in - <sub-article> through %sub-article-atts; - <response> through %response-atts; 5. XML:LANG - Added @xml:lang to the following elements: Added to facilitate multiple languages. - article 4. AFFILIATION ALTERNATIVES - Added the element <aff-alternatives> to <front-stub> through %front-stub-model;. This element will hold multiple <aff>s that are a representation of a single affiliation, for example, the name of an institution in two languages or two scripts. 3. LANGUAGE CODES - Codes for languages as well as variants, transliterations, regions, scripts, and combinations such as "Jpan"(Han + Hiragana + Katakana). These values should be taken from RFC 5646/W3C/IANA Subtag Registry recommendations and can be found online at: http://www.iana.org/assignments/language-subtag-registry ============================================================= Version 3.0 (DAL/BTU) v3.0 (2007-10-31) Version 3.0 is the first non-backward-compatible release. In addition to the usual incremental changes, some elements and attributes have been renamed and/or remodeled to better meet user needs and to increase tag set consistency. All module change histories are available through the Tag Suite web site at http://dtd.nlm.nih.gov. Details on version 3.0 are available at http://dtd.nlm.nih.gov/3.0. 2. Changed default @xml:lang from "EN" from "en" to match latest RFC 4646/W3C/IANA Subtag Registry recommendations 1. Updated public identifier to "v3.0 20071031//EN" -->
<!– ============================================================= –> <!– DESIGN CONSIDERATIONS –> <!– ============================================================= –>
<!– MODULAR DTD LIBRARY
A set of journal archiving and interchange DTD modules was written as the basis for publishing, interchange, and repository DTDs, with the intention that DTDs for specific purposes, such as this publishing DTD, would be developed based on them. This publishing DTD has been optimized for the creation of new journal articles. This means that it is far smaller (fewer elements, and fewer choices in many contexts) than was the interchange DTD. Where in the interchange DTD there may have been several ways to express the same information, only one is provided for authoring. It was not the intention to limit the expressive power licensed by the DTD, but rather to limit the meaningless choices needed in a full archiving and interchange DTD that make conversion from a wide variety of formats as easy as possible. This Publishing DTD has been developed from the JATS DTD Suite modules, in the approved manner, making changes to the declarations in those modules by overriding Parameter Entity defined in the over-ride (customization) modules: %journalpubcustom-classes.ent; %journalpubcustom-mixes.ent; %journalpubcustom-models.ent; which are all declared in the module: %journalpubcustom-modules.ent; Additional Publishing-DTD-Specific material is defined in the module(s): %nlmcitation.ent; No changes to any of the original JATS DTD Suite modules are required in order to use this DTD. -->
<!– ============================================================= –> <!– MODULES OF MODULES INVOKED –> <!– ============================================================= –>
<!– MODULE TO NAME DTD-SPECIFIC MODULES –> <!– Names all DTD-specific external modules –> <!ENTITY % journalpub-oasis-custom-modules.ent
PUBLIC
“-//NLM//DTD JATS (Z39.96) Journal Publishing DTD with OASIS Tables DTD-Specific Modules v1.1d2 20140930//EN” “JATS-journalpub-oasis-custom-modules1.ent” > %journalpub-oasis-custom-modules.ent;
<!– MODULE TO NAME THE MODULES –> <!– Declares all the external modules that are
part of the modular JATS DTD Suite library. Thus it does NOT declare itself; the DTD-specific module-of-modules; or any of the DTD-specific class, mix, or model over-ride modules. Those are declared in the DTD-specific module of modules. Since this module declares but does not invoke modules, this DTD invokes any modules it uses by referencing the external Parameter Entities defined in the Module of Modules. To include a set of elements (such as all the lists or the MathML elements) this module defines the external Parameter Entity for the module(s) that contains the MathML declarations and the DTD references that entity. -->
<!ENTITY % modules.ent PUBLIC “-//NLM//DTD JATS (Z39.96) JATS DTD Suite Module of Modules v1.1d2 20140930//EN” “JATS-modules1.ent” > %modules.ent;
<!– ============================================================= –> <!– OASIS NAMESPACE SETUP –> <!– ============================================================= –>
<!– DEFINE OASIS NAMESPACE ATTRIBUTE AND PREFIX–> <!– Names the module defines the OASIS CALS
Exchange Model namespace, prefix, and pseudo-attribute @xmlns and all the element qnames for CALS Tables. -->
%JATS-oasis-namespace.ent;
<!– ============================================================= –> <!– SET UP COMMON (ALL ELEMENT) ATTRIBUTES –> <!– ============================================================= –>
<!– COMMON ATTRIBUTES MODULE –> <!– Set up the common attributes, those used on
nearly all elements. Must be called before the custom models module. -->
%JATS-common-atts.ent;
<!– ============================================================= –> <!– CUSTOMIZATION MODULES INVOKED –> <!– Note: These modules must be called after –> <!– all Module of Modules but before any other –> <!– modules. Unlike any other grouping, order –> <!– of these modules matters. –> <!– ============================================================= –>
<!– DTD-SPECIFIC CLASS CUSTOMIZATIONS MODULE –> <!– Names the module that holds the DTD-specific
class definitions for the Journal Publishing DTD that will over-ride classes in the Suite. (Defined in %journalpubcustom-modules.ent;)-->
%journalpub-oasis-custom-classes1.ent;
<!– DEFAULT ELEMENT CLASSES MODULE –> <!– Names the module that holds the standard
class definitions for the JATS DTD Suite. -->
%default-classes.ent;
<!– DTD-SPECIFIC MIX CUSTOMIZATIONS MODULE –> <!– Set up the Parameter Entities and element
class definitions that will be used to over-ride some element mixes in this DTD. (Defined in %journalpubcustom-modules.ent;)-->
%journalpubcustom-mixes.ent;
<!– DEFAULT MIX CUSTOMIZATIONS MODULE –> <!– Names the module that holds the standard
mix definitions for the JATS DTD Suite. -->
%default-mixes.ent;
<!– DTD-SPECIFIC MODELS/ATTRIBUTES CUSTOMIZATIONS
MODULE -->
<!– Names the module that holds the over-rides
of content models, attribute lists, elements lists to be used in content models, and attribute values. These are DTD-specific. (Defined in %journalpubcustom-modules.ent;)-->
%journalpubcustom-models.ent;
<!– ============================================================= –> <!– COMMON (SHARED) ELEMENTS MODULE INVOKED –> <!– ============================================================= –>
<!– COMMON (SHARED) DECLARATIONS –> <!– Declarations for elements, attributes,
entities, and Notations that are shared by more than one class module. Note: Must be called before any of the class modules. -->
%common.ent;
<!– ============================================================= –> <!– JOURNAL ARTICLE CLASS ELEMENTS (alpha) –> <!– ============================================================= –>
<!– ARTICLE METADATA ELEMENTS –> %articlemeta.ent;
<!– BACK MATTER ELEMENTS –> %backmatter.ent;
<!– DISPLAY (GRAPHICAL) ELEMENTS –> %display.ent;
<!– FORMATTING ELEMENT CLASSES –> <!– Elements that change rendition/display. –> %format.ent;
<!– FUNDING ELEMENTS –> <!– Elements that describe the sponsorship or
open access -->
%funding.ent;
<!– JOURNAL METADATA ELEMENTS –> %journalmeta.ent;
<!– LINK CLASS ELEMENTS –> %link.ent;
<!– LIST CLASS ELEMENTS –> %list.ent;
<!– MATH ELEMENTS –> %math.ent;
<!– NLM CITATION ELEMENT –> %nlmcitation.ent;
<!– OASIS EXCHANGE (CALS) TABLE SETUP MODULE –> <!– Set up the necessary Parameter Entity values
and then invokes OASIS Exchange table module -->
%oasis-tablesetup.ent;
<!– PARAGRAPH-LEVEL ELEMENTS –> %para.ent;
<!– PHRASE-LEVEL ELEMENTS –> %phrase.ent;
<!– BIBLIOGRAPHIC REFERENCE (CITATION)
CLASS ELEMENTS -->
%references.ent;
<!– RELATED OBJECT ELEMENT –> <!– Defines the <related-object> element to
describe a related object such as a related book or a dataset. -->
%related-object.ent;
<!– SECTION ELEMENTS –> %section.ent;
<!– ============================================================= –> <!– THE REST OF THE EXTERNAL MODULES INVOKED –> <!– ============================================================= –>
<!– MATHML SETUP MODULE –> <!– Invoke the MathML modules –> %mathmlsetup.ent;
<!– XHTML TABLE SETUP MODULE –> <!– Set up the necessary Parameter Entity values
and then invoke XHTML (HTML 4.0) table module -->
%XHTMLtablesetup.ent;
<!– SPECIAL CHARACTERS DECLARATIONS –> <!– Standard XML special character entities
used in this DTD -->
%xmlspecchars.ent;
<!– CUSTOM SPECIAL CHARACTERS DECLARATIONS –> <!– Custom special character entities created
specifically for use in this DTD Suite -->
%chars.ent;
<!– NOTATION DECLARATIONS MODULE –> %notat.ent;
<!– ============================================================= –> <!– PARAMETER ENTITIES FOR ATTRIBUTE LISTS –> <!– ============================================================= –>
<!– DTD VERSION –> <!– What version of this DTD was used to make
the document instance under consideration. Note that this is a fixed value that should change every time the DTD changes versions or revisions. -->
<!ENTITY % dtd-version
"dtd-version CDATA #FIXED '1.1d2'" >
<!– ARTICLE ATTRIBUTES –> <!– Attributes for the top-level element
<article>. OASIS Tables are namespaced at the <table> level rather than here. -->
<!ENTITY % article-atts
"%jats-common-atts; article-type CDATA #IMPLIED %dtd-version; specific-use CDATA #IMPLIED xml:lang NMTOKEN 'en' %XLINK.xmlns.attrib; %MATHML.xmlns.attrib; %Schema.xmlns.attrib; %oasis.xmlns.attrib;" >
<!– BACK ATTRIBUTES –> <!– Attributes for the <back> element –> <!ENTITY % back-atts
"%jats-common-atts;" >
<!– BODY ATTRIBUTES –> <!– Attributes for the <body> element –> <!ENTITY % body-atts
"%jats-common-atts; specific-use CDATA #IMPLIED" >
<!– FRONT ATTRIBUTES –> <!– Attributes for the <front> element –> <!ENTITY % front-atts
"%jats-common-atts;" >
<!– FRONT STUB ATTRIBUTES –> <!– Attributes for the <front-stub> element –> <!ENTITY % front-stub-atts
"%jats-common-atts;" >
<!– SUB-ARTICLE ATTRIBUTES –> <!– Attributes for the <sub-article> element –> <!ENTITY % sub-article-atts
"%jats-common-atts; article-type CDATA #IMPLIED specific-use CDATA #IMPLIED xml:lang NMTOKEN #IMPLIED" >
<!– RESPONSE ATTRIBUTES –> <!– Attributes for the <response> element –> <!ENTITY % response-atts
"%jats-common-atts; response-type CDATA #IMPLIED specific-use CDATA #IMPLIED xml:lang NMTOKEN #IMPLIED" >
<!– ============================================================= –> <!– JOURNAL ARTICLE ELEMENTS –> <!– ============================================================= –>
<!– ARTICLE MODEL (LIMITED) –> <!– Article-like model used for, for example,
a short sub-article such as a news brief that is contained in side a journal article. -->
<!ENTITY % article-short-model
"((front | front-stub), body?, back?, floats-group?)" >
<!– ARTICLE MODEL WITH SUBARTICLE OR RESPONSE –> <!– Typical journal article model, which may
contain extended components, such as sub-articles or responses, but which usually contains neither. -->
<!ENTITY % article-full-model
"(front, body?, back?, floats-group?, (sub-article* | response*) )" >
<!– ARTICLE –> <!– The complete content of a journal article.
Details at: http://jats.nlm.nih.gov/publishing/tag-library/1.0/index.html?elem=article -->
<!ELEMENT article %article-full-model; > <!ATTLIST article
%article-atts; >
<!– ============================================================= –> <!– FRONT MATTER ELEMENTS –> <!– ============================================================= –>
<!– FRONT MATTER MODEL –> <!– Model for the <front> matter (the header
metadata) of a journal article) -->
<!ENTITY % front-model “(journal-meta, article-meta,
(%front-back.class;)? )" >
<!– FRONT MATTER –> <!– The metadata concerning an article, such as
the name and issue of the journal in which it appears and the name and author(s) of the article. Details at: http://jats.nlm.nih.gov/publishing/tag-library/1.0/index.html?elem=front -->
<!ELEMENT front %front-model; > <!ATTLIST front
%front-atts; >
<!– ============================================================= –> <!– BODY ELEMENTS –> <!– ============================================================= –>
<!– BODY MODEL –> <!– Content model for the Body (main textual
content) of a journal article. -->
<!ENTITY % body-model “((%para-level;)*, (%sec-level;)*,
sig-block?)" >
<!– BODY OF THE ARTICLE –> <!– The main textual portion of the article that
conveys the content. Details at: http://jats.nlm.nih.gov/publishing/tag-library/1.0/index.html?elem=body -->
<!ELEMENT body %body-model; > <!ATTLIST body
%body-atts; >
<!– ============================================================= –> <!– BACK MATTER ELEMENTS –> <!– ============================================================= –>
<!– BACK MATTER MODEL –> <!– Content model for the Back Matter (ancillary
material such as appendices) of a journal article. -->
<!ENTITY % back-model “(label?, title*, (%doc-back-matter-mix;)* )”>
<!– BACK MATTER –> <!– Ancillary or supporting material not included
as part of the main textual content of a journal article, for example appendices and acknowledgments. Details at: http://jats.nlm.nih.gov/publishing/tag-library/1.0/index.html?elem=back -->
<!ELEMENT back %back-model; > <!ATTLIST back
%back-atts; >
<!– ============================================================= –> <!– SUBARTICLE –> <!– ============================================================= –>
<!– SUBARTICLE MODEL –> <!– Content model for the <sub-article> element
-->
<!ENTITY % sub-article-model
"((front | front-stub), body?, back?, floats-group?, (sub-article* | response*) )" >
<!– SUBARTICLE –> <!– An article that is completely contained
inside another article. Both the article and the sub-article have their own metadata. Details at: http://jats.nlm.nih.gov/publishing/tag-library/1.0/index.html?elem=sub-article -->
<!ELEMENT sub-article %sub-article-model; > <!ATTLIST sub-article
%sub-article-atts; >
<!– FRONT MODEL STUB –> <!– Content model for the <front-stub> element,
a reduced metadata set for use in sub-articles and responses -->
<!ENTITY % front-stub-model
"(article-id*, article-categories?, title-group?, ( %contrib-group.class; | %aff-alternatives.class;)*, author-notes?, pub-date*, volume*, volume-id*, volume-series?, issue*, issue-id*, issue-title*, issue-sponsor*, issue-part?, volume-issue-group*, isbn*, supplement?, ( (fpage, lpage?, page-range?) | elocation-id)?, ( %address-link.class; | product | supplementary-material)*, history?, permissions?, self-uri*, (%related-article.class;)*, (%abstract.class;)*, trans-abstract*, (%kwd-group.class;)*, funding-group*, conference*, counts?, custom-meta-group?)" >
<!– STUB FRONT METADATA –> <!– A reduced metadata set for use in
sub-articles and responses, which will inherit metadata not defined in the stub from the enclosing article Details at: http://jats.nlm.nih.gov/publishing/tag-library/1.0/index.html?elem=front-stub -->
<!ELEMENT front-stub %front-stub-model; > <!ATTLIST front-stub
%front-stub-atts; >
<!– ============================================================= –> <!– RESPONSE ELEMENTS –> <!– ============================================================= –>
<!– RESPONSE –> <!– Reply, response, or commentary concerning the
journal article. In the typical case, the response is included in the same XML package as the original article, and thus attached at the end of the article proper. Details at: http://jats.nlm.nih.gov/publishing/tag-library/1.0/index.html?elem=response -->
<!ELEMENT response %article-short-model; > <!ATTLIST response
%response-atts; >
<!– ================== End Journal Publishing DTD =============== –>