<!– ============================================================= –> <!– MODULE: Journal Publishing DTD –> <!– VERSION: NISO 0.4 –> <!– DATE: January 2011 –> <!– –> <!– ============================================================= –>
<!– ============================================================= –> <!– PUBLIC DOCUMENT TYPE DEFINITION –> <!– TYPICAL INVOCATION –> <!– “-//NLM//DTD JATS (Z39.96) Journal Publishing DTD (OASIS Tables) v0.4 20110131//EN”
Delivered as file "JATS-journalpublishing-oasis0.dtd" Available at: http://jats.nlm.nih.gov/publishing/0.4/JATS-journalpublishing-oasis0.dtd -->
<!– ============================================================= –>
<!– ============================================================= –> <!– SYSTEM: Journal Publishing DTD of the –> <!– Archiving and Interchange DTD Suite –> <!– –> <!– PURPOSE: DTD for creation of new journal articles –> <!– –> <!– This subset of the Journal Archiving and –> <!– Interchange DTD is optimized for the authoring –> <!– (or initial XML tagging) of journal articles and –> <!– some non-article material such as product and –> <!– book reviews. It describes both the metadata for –> <!– a journal article and the full content of the –> <!– article. –> <!– This DTD was constructed using the modules in the –> <!– Archiving and Interchange DTD Suite. –> <!– –> <!– CONTAINS: 1) Declare and invoke the Publishing (Blue) DTD- –> <!– specific module of modules, that names any –> <!– modules created expressly for this DTD. –> <!– (%journalpubcustom-modules.ent;) –> <!– 2) Declare and invoke the DTD Suite module of –> <!– modules (%modules.ent;), the Archiving and –> <!– Interchange Suite module that names all the –> <!– Suite modules this DTD might invoke –> <!– 3) Invoke DTD-specific classes over-ride module –> <!– (%journalpub-classes.ent;) –> <!– 4) Invoke Suite default classes –> <!– (%default-classes.ent;) –> <!– 5) Invoke DTD-specific mixes over-ride module –> <!– (%journalpubcustom-mixes.ent;) –> <!– 6) Invoke Suite default mixes –> <!– (%default-mixes.ent;) –> <!– 7) Invoke DTD-specific content model over-ride –> <!– module (%journalpubcustom-models.ent;) –> <!– 8) Invoke the Common Element Module (from Suite) –> <!– 9) Invoke all the Class Modules (from Suite) as –> <!– well as any DTD-specific element modules –> <!– 10) Parameter Entities for attribute values used –> <!– in this module (DTD-specific definitions) –> <!– 11) Define document element (Article <article>) –> <!– 12) Define Front Matter <front> –> <!– 13) Define Body Matter <body> –> <!– 14) Define Back Matter <back> –> <!– –> <!– TAG SET SPONSOR –> <!– Digital Archive of Journal Articles –> <!– National Center for Biotechnology Information –> <!– (NCBI) –> <!– National Library of Medicine (NLM) –> <!– –> <!– CREATED FOR: –> <!– Digital archives and publishers who wish to –> <!– create a custom XML DTD for original markup of –> <!– journal literature, books, and related material, –> <!– or for archiving and transferring such material –> <!– between archives. –> <!– –> <!– This DTD is in the public domain. An organization –> <!– that wishes to create its own DTD from the suite –> <!– may do so without permission from NLM. –> <!– –> <!– The suite has been set up to be extended using a –> <!– new DTD file and a new DTD-specific customization –> <!– module to redefine the many Parameter Entities. –> <!– Do not modify the suite directly or redistribute –> <!– modified versions of the suite. –> <!– –> <!– In the interest of maintaining consistency and –> <!– clarity for potential users, NLM requests: –> <!– –> <!– 1. If you create a DTD from the Archiving and –> <!– Interchange DTD Suite and intend to stay –> <!– compatible with the suite, then please include –> <!– the following statement as a comment in all of –> <!– your DTD modules: –> <!– “Created from, and fully compatible with, –> <!– the NISO Z39.96 Journal Article Tag Suite –> <!– (JATS).” –> <!– –> <!– 2. If you alter one or more modules of the suite, –> <!– then please rename your version and all its –> <!– modules to avoid any confusion with the –> <!– original suite. Also, please include the –> <!– following statement as a comment in all your –> <!– DTD modules: –> <!– “Based in part on, but not fully compatible –> <!– with, the NISO Z39.96 Journal Article Tag –> <!– Suite.” –> <!– –> <!– ORIGINAL CREATION DATE: –> <!– February 2003 –> <!– –> <!– CREATED BY: Jeff Beck (NCBI) –> <!– B. Tommie Usdin (Mulberry Technologies, Inc.) –> <!– –> <!– The Journal Publishing DTD is built from the –> <!– Archiving and Interchange DTD Suite. –> <!– –> <!– Suggestions for refinements and enhancements to –> <!– this DTD should be sent in email to: –> <!– jats@ncbi.nlm.nih.gov –> <!– ============================================================= –>
<!– ============================================================= –> <!– DTD VERSION/CHANGE HISTORY –> <!– ============================================================= –> <!–
Version Reason/Occasion (who) vx.x (yyyy-mm-dd)
============================================================= Version 0.4 (DAL/BTU) v0.4 (2011-01-31) This Tag Set is in the process of becoming a NISO standard. The version numbers are starting over from 0.4", as a Trial Use Draft, to be made into "Version 1.0" when the Tag Suite becomes a NISO standard. Thus, NLM "Version 3.1 Draft" has been changed to NISO "Version 0.4". No model, attribute, or parameter entity changes were made as part of this renaming. Details on NISO Tial Use Draft Version 0.4 are available at http://jats.nlm.nih.gov/JATS-0.4. 11. Updated the DTD-version attribute to "0.4" 10. Updated the public identifier to "v0.4 20110131//EN", modified the formal public identifier to include "JATS (Z39.96)", and the filename as delivered to include "JATS" and the new version number "0".n Also included the phrase (OASIS Tables)in the formal name. ============================================================= Version 3.1 (DAL/BTU) v3.1 (2010-04-30) Version 3.1 is fully compatible with Version 3.0. Details on version 3.1 are available at http://jats.nlm.nih.gov/3.1. 9. OASIS TABLES - Replaced the XHTML table model with the OASIS CALS exchange Table Model 8. BODY ATTRIBUTES - Added attribute list and new PE %body-atts; to the model of <body>. The only current attribute is @specific-use, which indicates, for example, not a real tagged XML body, but a 'bag of words" for indexing purposes. 7. I18N - Changed the default for @xml:lang from "en" to #IMPLIED, so that the @xml:lang would inherit properly and not need to be over-ridden in - <sub-article> through %sub-article-atts; - <response> through %response-atts; 6. XML:LANG - Added @xml:lang to the following elements: Added to facilitate multiple languages. - article 5. AFFILIATION ALTERNATIVES - Added the element <aff-alternatives> to <front-stub> through %front-stub-model;. This element will hold multiple <aff>s that are a representation of a single affiliation, for example, the name of an institution in two languages or two scripts. 4. LANGUAGE CODES - Codes for languages as well as variants, transliterations, regions, scripts, and combinations such as "Jpan"(Han + Hiragana + Katakana). These values should be taken from RFC 5646/W3C/IANA Subtag Registry recommendations and can be found online at: http://www.iana.org/assignments/language-subtag-registry 3. Updated public identifier to "v3.1 20100830//EN" ============================================================= Version 3.0 (DAL/BTU) v3.0 (2007-10-31) Version 3.0 is the first non-backward-compatible release. In addition to the usual incremental changes, some elements and attributes have been renamed and/or remodeled to better meet user needs and to increase tag set consistency. All module change histories are available through the Tag Suite web site at http://dtd.nlm.nih.gov. Details on version 3.0 are available at http://jats.nlm.nih.gov/3.0. 2. Changed default @xml:lang from "EN" from "en" to match latest RFC 4646/W3C/IANA Subtag Registry recommendations 1. Updated public identifier to "v3.1 20100830//EN" -->
<!– ============================================================= –> <!– DESIGN CONSIDERATIONS –> <!– ============================================================= –>
<!– MODULAR DTD LIBRARY
A set of journal archiving and interchange DTD modules was written as the basis for publishing, interchange, and repository DTDs, with the intention that DTDs for specific purposes, such as this Publishing DTD, would be developed based on them. This publishing DTD has been optimized for the creation of new journal articles. This means that it is far smaller (fewer elements, and fewer choices in many contexts) than was the interchange DTD. Where in the interchange DTD there may have been several ways to express the same information, only one is provided for authoring. It was not the intention to limit the expressive power licensed by the DTD, but rather to limit the meaningless choices needed in a full archiving and interchange DTD that make conversion from a wide variety of formats as easy as possible. This Publishing DTD has been developed from the Archiving and Interchange DTD Suite modules, in the approved manner, making changes to the declarations in those modules by overriding Parameter Entity defined in the over-rise (customization) modules: %journalpubcustom-classes.ent; %journalpubcustom-mixes.ent; %journalpubcustom-models.ent; which are all declared in the module: %journalpubcustom-modules.ent; Additional Publishing-DTD-Specific material is defined in the module(s): %nlmcitation.ent; No changes to any of the original Archiving and Interchange Suite modules are required in order to use this DTD. -->
<!– ============================================================= –> <!– MODULES OF MODULES INVOKED –> <!– ============================================================= –>
<!– MODULE TO NAME DTD-SPECIFIC MODULES –> <!– Names all DTD-specific external modules –> <!ENTITY % journalpub-oasis-custom-modules.ent
PUBLIC
“-//NLM//DTD JATS (Z39.96) Journal Publishing DTD-Specific Modules (OASIS Tables) v0.4 20110131//EN” “JATS-journalpub-oasis-custom-modules0.ent” > %journalpub-oasis-custom-modules.ent;
<!– MODULE TO NAME THE MODULES –> <!– Declares all the external modules that are
part of the modular Journal Archiving and Interchange DTD Suite library. Thus it does NOT declare itself; the DTD-specific module-of-modules; or the DTD-specific class, mix, or model over-ride modules. Those are declared in the DTD-specific module of modules. Since this module declares but does not invoke modules, this DTD invokes any modules it uses by referencing the external Parameter Entities defined in the Module of Modules. To include a set of elements (such as all the lists or the MathML elements) this module defines the external Parameter Entity for the module(s) that contains the MathML declarations and the DTD references that entity. -->
<!ENTITY % modules.ent PUBLIC “-//NLM//DTD JATS (Z39.96) Archiving and Interchange DTD Suite Module of Modules v0.4 20110131//EN” “JATS-modules0.ent” > %modules.ent;
<!– ============================================================= –> <!– CUSTOMIZATION MODULES INVOKED –> <!– Note: These modules must be called after –> <!– all Module of Modules but before any other –> <!– modules. Unlike any other grouping, order –> <!– of these modules matters. –> <!– ============================================================= –>
<!– DTD-SPECIFIC CLASS CUSTOMIZATIONS MODULE –> <!– Names the module that holds the DTD-specific
class definitions for the Journal Publishing DTD that will over-ride classes in the Suite. (Defined in %journalpubcustom-modules.ent;)-->
%journalpub-oasis-custom-classes.ent;
<!– DEFAULT ELEMENT CLASSES MODULE –> <!– Names the module that holds the standard
class definitions for the Journal Archiving and Interchange DTD Suite. -->
%default-classes.ent;
<!– DTD-SPECIFIC MIX CUSTOMIZATIONS MODULE –> <!– Set up the Parameter Entities and element
class definitions that will be used to over-ride some element mixes in this DTD. (Defined in %journalpubcustom-modules.ent;)-->
%journalpubcustom-mixes.ent;
<!– DEFAULT MIX CUSTOMIZATIONS MODULE –> <!– Names the module that holds the standard
mix definitions for the Journal Archiving and Interchange DTD Suite. -->
%default-mixes.ent;
<!– DTD-SPECIFIC MODELS/ATTRIBUTES CUSTOMIZATIONS
MODULE -->
<!– Names the module that holds the over-rides
of content models, attribute lists, elements lists to be used in content models, and attribute values. These are DTD-specific. (Defined in %journalpubcustom-modules.ent;)-->
%journalpubcustom-models.ent;
<!– ============================================================= –> <!– COMMON (SHARED) ELEMENTS MODULE INVOKED –> <!– ============================================================= –>
<!– COMMON (SHARED) DECLARATIONS –> <!– Declarations for elements, attributes,
entities, and Notations that are shared by more than one class module. Note: Must be called before any of the class modules. -->
%common.ent;
<!– ============================================================= –> <!– JOURNAL ARTICLE CLASS ELEMENTS (alpha) –> <!– ============================================================= –>
<!– ARTICLE METADATA ELEMENTS –> %articlemeta.ent;
<!– BACK MATTER ELEMENTS –> %backmatter.ent;
<!– DISPLAY (GRAPHICAL) ELEMENTS –> %display.ent;
<!– FORMATTING ELEMENT CLASSES –> <!– Elements that change rendition/display. –> %format.ent;
<!– FUNDING ELEMENTS –> <!– Elements that describe the sponsorship or
open access -->
%funding.ent;
<!– JOURNAL METADATA ELEMENTS –> %journalmeta.ent;
<!– LINK CLASS ELEMENTS –> %link.ent;
<!– LIST CLASS ELEMENTS –> %list.ent;
<!– MATH ELEMENTS –> %math.ent;
<!– NLM CITATION ELEMENT –> %nlmcitation.ent;
<!– PARAGRAPH-LEVEL ELEMENTS –> %para.ent;
<!– PHRASE-LEVEL ELEMENTS –> %phrase.ent;
<!– BIBLIOGRAPHIC REFERENCE (CITATION)
CLASS ELEMENTS -->
%references.ent;
<!– RELATED OBJECT ELEMENT –> <!– Defines the <related-object> element to
describe a related object such as a related book or a dataset. -->
%related-object.ent;
<!– SECTION ELEMENTS –> %section.ent;
<!– ============================================================= –> <!– THE REST OF THE EXTERNAL MODULES INVOKED –> <!– ============================================================= –>
<!– MATHML SETUP MODULE –> <!– Invoke the MathML modules –> %mathmlsetup.ent;
<!– XHTML TABLE SETUP MODULE –> <!– Set up the necessary Parameter Entity values
and then invoke XHTML (HTML 4.0) table module -->
%XHTMLtablesetup.ent;
<!– OASIS EXCHANGE (CALS) TABLE SETUP MODULE –> <!– Set up the necessary Parameter Entity values
and then invokes OASIS Exchange table module -->
%oasis-tablesetup.ent;
<!– SPECIAL CHARACTERS DECLARATIONS –> <!– Standard XML special character entities
used in this DTD -->
%xmlspecchars.ent;
<!– CUSTOM SPECIAL CHARACTERS DECLARATIONS –> <!– Custom special character entities created
specifically for use in this DTD Suite -->
%chars.ent;
<!– NOTATION DECLARATIONS MODULE –> %notat.ent;
<!– ============================================================= –> <!– PARAMETER ENTITIES FOR ATTRIBUTE LISTS –> <!– ============================================================= –>
<!– DTD VERSION –> <!– What version of this DTD was used to make
the document instance under consideration. Note that this is a fixed value that should change every time the DTD changes versions or revisions. -->
<!ENTITY % dtd-version
"dtd-version CDATA #FIXED '0.4'" >
<!– ARTICLE ATTRIBUTES –> <!– Attributes for the top-level element
<article> -->
<!ENTITY % article-atts
"article-type CDATA #IMPLIED %dtd-version; specific-use CDATA #IMPLIED xml:lang NMTOKEN 'en' %XLINK.xmlns.attrib; %MATHML.xmlns.attrib; %Schema.xmlns.attrib; %oasis.xmlns.attrib;" >
<!– BODY ATTRIBUTES –> <!– Attributes for the <body> element –> <!ENTITY % body-atts
"specific-use CDATA #IMPLIED" >
<!– SUB-ARTICLE ATTRIBUTES –> <!– Attributes for the <sub-article> element –> <!ENTITY % sub-article-atts
"article-type CDATA #IMPLIED id ID #IMPLIED specific-use CDATA #IMPLIED xml:lang NMTOKEN #IMPLIED" >
<!– RESPONSE ATTRIBUTES –> <!– Attributes for the <response> element –> <!ENTITY % response-atts
"response-type CDATA #IMPLIED id ID #IMPLIED specific-use CDATA #IMPLIED xml:lang NMTOKEN #IMPLIED" >
<!– ============================================================= –> <!– JOURNAL ARTICLE ELEMENTS –> <!– ============================================================= –>
<!– ARTICLE MODEL (LIMITED) –> <!– Article-like model used for, for example,
a short sub-article such as a news brief that is contained in side a journal article. -->
<!ENTITY % article-short-model
"((front | front-stub), body?, back?, floats-group?)" >
<!– ARTICLE MODEL WITH SUBARTICLE OR RESPONSE –> <!– Typical journal article model, which may
contain extended components, such as sub-articles or responses, but which usually contains neither. -->
<!ENTITY % article-full-model
"(front, body?, back?, floats-group?, (sub-article* | response*) )" >
<!– ARTICLE –> <!– The complete content of a journal article.
Details at: http://jats.nlm.nih.gov/publishing/tag-library/0.4/index.html?elem=article -->
<!ELEMENT article %article-full-model; > <!ATTLIST article
%article-atts; >
<!– ============================================================= –> <!– FRONT MATTER ELEMENTS –> <!– ============================================================= –>
<!– FRONT MATTER MODEL –> <!– Model for the <front> matter (the header
metadata) of a journal article) -->
<!ENTITY % front-model “(journal-meta, article-meta,
(%front-back.class;)? )" >
<!– FRONT MATTER –> <!– The metadata concerning an article, such as
the name and issue of the journal in which it appears and the name and author(s) of the article. Details at: http://jats.nlm.nih.gov/publishing/tag-library/0.4/index.html?elem=front -->
<!ELEMENT front %front-model; >
<!– ============================================================= –> <!– BODY ELEMENTS –> <!– ============================================================= –>
<!– BODY MODEL –> <!– Content model for the Body (main textual
content) of a journal article. -->
<!ENTITY % body-model “((%para-level;)*, (%sec-level;)*,
sig-block?)" >
<!– BODY OF THE ARTICLE –> <!– The main textual portion of the article that
conveys the content. Details at: http://jats.nlm.nih.gov/publishing/tag-library/0.4/index.html?elem=body -->
<!ELEMENT body %body-model; > <!ATTLIST body
%body-atts; >
<!– ============================================================= –> <!– BACK MATTER ELEMENTS –> <!– ============================================================= –>
<!– BACK MATTER MODEL –> <!– Content model for the Back Matter (ancillary
material such as appendices) of a journal article. -->
<!ENTITY % back-model “(label?, title*, (%doc-back-matter-mix;)* )”>
<!– BACK MATTER –> <!– Ancillary or supporting material not included
as part of the main textual content of a journal article, for example appendices and acknowledgments. Details at: http://jats.nlm.nih.gov/publishing/tag-library/0.4/index.html?elem=back -->
<!ELEMENT back %back-model; >
<!– ============================================================= –> <!– SUBARTICLE –> <!– ============================================================= –>
<!– SUBARTICLE MODEL –> <!– Content model for the <sub-article> element
-->
<!ENTITY % sub-article-model
"((front | front-stub), body?, back?, floats-group?, (sub-article* | response*) )" >
<!– SUBARTICLE –> <!– An article that is completely contained
inside another article. Both the article and the sub-article have their own metadata. Details at: http://jats.nlm.nih.gov/publishing/tag-library/0.4/index.html?elem=sub-article -->
<!ELEMENT sub-article %sub-article-model; > <!ATTLIST sub-article
%sub-article-atts; >
<!– FRONT MODEL STUB –> <!– Content model for the <front-stub> element,
a reduced metadata set for use in sub-articles and responses -->
<!ENTITY % front-stub-model
"(article-id*, article-categories?, title-group?, (%contrib-group.class; | %aff-alternatives.class;)*, author-notes?, pub-date*, volume?, volume-id*, volume-series?, issue?, issue-id*, issue-title*, issue-sponsor*, issue-part?, isbn*, supplement?, ((fpage, lpage?, page-range?) | elocation-id)?, (%address-link.class; | product | supplementary-material)*, history?, permissions?, self-uri*, related-article*, abstract*, trans-abstract*, kwd-group*, funding-group*, conference*, counts?, custom-meta-group?)" >
<!– STUB FRONT METADATA –> <!– A reduced metadata set for use in
sub-articles and responses, which will inherit metadata not defined in the stub from the enclosing article Details at: http://jats.nlm.nih.gov/publishing/tag-library/0.4/index.html?elem=front-stub -->
<!ELEMENT front-stub %front-stub-model; >
<!– ============================================================= –> <!– RESPONSE ELEMENTS –> <!– ============================================================= –>
<!– RESPONSE –> <!– Reply, response, or commentary concerning the
journal article. In the typical case, the response is included in the same XML package as the original article, and thus attached at the end of the article proper. Details at: http://jats.nlm.nih.gov/publishing/tag-library/0.4/index.html?elem=response -->
<!ELEMENT response %article-short-model; > <!ATTLIST response
%response-atts; >
<!– ================== End Journal Publishing DTD =============== –>