<!– ============================================================= –> <!– MODULE: MathML DTD SETUP MODULE –> <!– VERSION: ANSI/NISO JATS Version 1.0 (Z39.96-2012) –> <!– DATE: November 2013 (0915) –> <!– –> <!– ============================================================= –>

<!– ============================================================= –> <!– PUBLIC DOCUMENT TYPE DEFINITION –> <!– TYPICAL INVOCATION –> <!– “-//NLM//DTD JATS (Z39.96) JATS DTD Suite MathML 3.0 Setup Module v1.1d1 20130915//EN”

Delivered as file "JATS-mathml3-mathmlsetup1.ent"             -->

<!– ============================================================= –>

<!– ============================================================= –> <!– SYSTEM: JATS DTD Suite –> <!– –> <!– PURPOSE: Provides the organization for using the –> <!– MathML 3.0 DTD –> <!– - Overrides to standard parameter entities used –> <!– in the MathML 3.0 DTD –> <!– - Calls the MathML 3.0 DTD –> <!– –> <!– MODULES REQUIRED: –> <!– 1) mathml3.dtd (MathML 3.0 DTD) –> <!– –> <!– TAG SET SPONSOR –> <!– National Center for Biotechnology –> <!– Information (NCBI) –> <!– National Library of Medicine (NLM) –> <!– –> <!– CREATED FOR: –> <!– This module was created for the JATS DTD Suite. –> <!– Digital archives and publishers may use the –> <!– DTD as is for markup of journal literature or –> <!– related material for archiving and transferring –> <!– such material between archives or create a –> <!– custom XML DTD from the Suite for –> <!– these purposes. –> <!– –> <!– This DTD is in the public domain. An organization –> <!– that wishes to create its own DTD from the suite –> <!– may do so without permission from NLM. –> <!– –> <!– The suite has been set up to be extended using a –> <!– new DTD file and a new DTD-specific customization –> <!– module to redefine the many Parameter Entities. –> <!– Do not modify the suite directly or redistribute –> <!– modified versions of the suite. –> <!– –> <!– In the interest of maintaining consistency and –> <!– clarity for potential users, NLM requests: –> <!– –> <!– 1. If you create a DTD from the JATS DTD Suite –> <!– and intend to stay compatible with the suite, –> <!– then please include the following statement –> <!– as a comment in all of your DTD modules: –> <!– “Created from, and fully compatible with, –> <!– the ANSI/NISO Z39.96 Journal Article Tag –> <!– Suite (JATS).” –> <!– –> <!– 2. If you alter one or more modules of the suite, –> <!– then please rename your version and all its –> <!– modules to avoid any confusion with the –> <!– original suite. Also, please include the –> <!– following statement as a comment in all your –> <!– DTD modules: –> <!– “Based in part on, but not fully compatible –> <!– with, the ANSI/NISO Z39.96 Journal Article –> <!– Tag Suite (JATS).” –> <!– –> <!– ORIGINAL CREATION DATE: –> <!– September 2013 –> <!– –> <!– CREATED BY: Mulberry Technologies, Inc. for the NISO Z39.96 –> <!– Working Group. Mulberry Technologies was –> <!– supported by National Center for Biotechnology –> <!– Information (NCBI), a center of the US National –> <!– Library of Medicine (NLM). –> <!– –> <!– This module is part of the JATS DTD Suite. The –> <!– Suite is a continuation of work done by NCBI, –> <!– Mulberry Technologies, and Inera, Inc. on the NLM –> <!– Journal Archiving and Interchange DTD Suite, which–> <!– was originally released in December, 2002. –> <!– –> <!– NLM thanks the Harvard University Libraries, both –> <!– for proposing that a draft archiving NLM DTD for –> <!– life sciences journals be extended to accommodate –> <!– journals in all disciplines and for sponsoring –> <!– Inera Inc.'s collaboration with other DTD –> <!– authors in completing NLM Version 1.0. The –> <!– Andrew W. Mellon Foundation provided support for –> <!– these important contributions. –> <!– –> <!– Suggestions for refinements and enhancements to –> <!– this DTD should be sent in email to: –> <!– jats@ncbi.nlm.nih.gov –> <!– ============================================================= –>

<!– ============================================================= –> <!– DTD VERSION/CHANGE HISTORY –> <!– ============================================================= –> <!–

Version Reason/Occasion (who) vx.x (yyyy-mm-dd)

   =============================================================
   NISO JATS Version 1.1d1           (DAL/BTU) v1.1 (2013-11-15)
   ANSI/NISO Z39.96-2012 (pre-release for V1.0 BITS; Version 1.1) 
   NISO JATS Standing Committee met and answered the requests and
   suggestions from the NISO request forms.
   Details concerning ANSI/NISO Z39.96-2012 JATS-based DTDs, XSDs, 
   RNGs and supporting documentation are available at
         http://jats.nlm.nih.gov/1.1/
7. PARAMETER ENTITY NAME CHANGE IN THE MATHML DTD
   When MathML 2.0 became MathML 3.0, the parameter entity
   %product.class; was defined both in the MathML 3.0 DTD and also 
   in JATS-default-classes.ent. Renamed class in the MathML DTD
   until JATS names can be changed. Renamed the MathML parameter 
   entity to "mml-product.class".
   the name of the parameter entity that establishes the model of
   the <annotation-xml> element was changed.
   "Annotation-xml.content" became "annotation-xml.model".
6. PARAMETER ENTITY NAME CHANGE - When MathML 2.0 became MathML 3.0,
   the name of the parameter entity that establishes the model of
   the <annotation-xml> element was changed.
   "Annotation-xml.content" became "annotation-xml.model".
 5.  MAJOR CHANGE: MathML 2.0 replaced with MathML 3.0
   =============================================================
   NISO JATS Version 1.0             (DAL/BTU) v1.0 (2012-xx-xx)
   ANSI/NISO Z39.96-2012 (Version 1.0) 
   Details concerning ANSI/NISO Z39.96-2012 JATS-based DTDs, XSDs, 
   RNGs and supporting documentation are available at
         http://jats.nlm.nih.gov/1.0/
4. Updated the DTD-version attribute to "1.0" and the formal
   public identifier to the date: "v1.0 20120330//EN".
   =============================================================
   Version 0.4                       (DAL/BTU) v0.4 (2011-01-31)
   This Tag Set is in the process of becoming a NISO standard.
   The version numbers are starting over from 0.4", as a Trial
   Use Draft, to be made into "Version 1.0" when the Tag Suite 
   becomes a NISO standard. Thus, the version number that would
   have been "NLM Version 3.1 Draft" has become NISO JATS
   "Version 0.4".
   Details on NISO Trial Use Draft Version 0.4 are available at
         http://jats.nlm.nih.gov/JATS-0.4.
3. Updated the DTD-version attribute to "0.4" 
2. Updated the public identifier to "v0.4 20110131", 
   modified the formal public identifier to include "JATS (Z39.96)",
   and the filename as delivered to include "JATS" and the
   new version number "0".
   =============================================================
   Version 3.0                       (DAL/BTU) v3.0 (2007-10-31)
   Version 3.0 is the first non-backward-compatible release.
   In addition to the usual incremental changes, some
   elements and attributes have been renamed and/or remodeled
   to better meet user needs and to increase tag set consistency.
   All module change histories are available through the Tag Suite
   web site at http://dtd.nlm.nih.gov.
   Details on version 3.0 are available at
         http://dtd.nlm.nih.gov/3.0.
1. Updated public identifier to "v3.0 20080202//EN"              -->

<!– ============================================================= –> <!– SET UP FOR THE MathML MODULE –> <!– ============================================================= –>

<!– MathML DTD –> <!– The official version of the MathML 3.0 can

be found at: http://www.w3.org/TR/MathML3/
PUBLIC "-//W3C//DTD MathML 3.0//EN"
SYSTEM "mathml3.dtd"                       -->

<!– ============================================================= –> <!– SET UP W3C XML SCHEMA –> <!– ============================================================= –>

<!– MAKE PREFIX EQUAL “xsi” (same as MathML) –> <!ENTITY % Schema.prefix

"xsi"                                        >

<!– SET UP NAMESPACE FOR SCHEMA

(same as MathML)                        -->

<!ENTITY % Schema.xmlns “www.w3.org/2001/XMLSchema-instance” >

<!– OVER-RIDE MATHML DTD TO MAKE EXPLICIT NS –> <!– MathML sets this up but then lets the

attribute be a CDATA one, not the real
namespace URI                              -->

<!ENTITY % Schema.xmlns.attrib

"xmlns:%Schema.prefix;  CDATA          #FIXED '%Schema.xmlns;'" >

<!– ============================================================= –> <!– SET UP “mml” AS THE MATH PREFIX –> <!– ============================================================= –>

<!– MAKE MATH PREFIX PARAMETER ENTITY HAPPEN –> <!ENTITY % MATHML.prefixed

"INCLUDE"                                    >

<!– MAKE PREFIX EQUAL “mml” –> <!ENTITY % MATHML.prefix “mml” >

<!– SET UP “pfx” –> <![%MATHML.prefixed;[ <!ENTITY % MATHML.pfx “%MATHML.prefix;:” > ]]>

<!– USE “pfx” TO SET THE MATH ELEMENT NAME –> <!ENTITY % math.qname “%MATHML.pfx;math” >

<!– ============================================================= –> <!– CALL THE MATHML ENTITIES –> <!– ============================================================= –>

<!– MATHML CHARACTER ENTITIES –> <!– Set the “INCLUDE” or “IGNORE” marked section

switch for the MATHML 2.0 DTD. This switch
determines whether the math processing in
the -%mathml.dtd; module or the
-%xmlspecchars.ent; module in this DTD Suite
will invoke the sets of special characters
that are defined AND INVOKED in the
-%xmlspecchars.ent; module.
A value of "IGNORE" turns off the second
invocation from the MathML DTD.            -->

<!ENTITY % mathml-charent.module

"IGNORE"                                     >

<!– MATHML-SPECIFIC CHARACTER ENTITIES –> <!– Because the MATHML invocation is canceled

using the parameter entity just defined,
the two external entities below must be
invoked from here, as neither XMLspecchars
nor the MathML DTD will invoke them.       -->

<!– New characters defined by MathML –> %ent-mmlextra;

<!– MathML aliases for characters defined above–> %ent-mmlalias;

<!– ============================================================= –> <!– RESTRICT CONTENT OF ANNOTATION –> <!– ============================================================= –>

<!– MATHML ANNOTATION MODEL –> <!– The MathML 3.0 DTD establishes the content of

the <mml:annotation> element as any MathML
expression. This is unnecessarily broad, 
causing inconvenience during conversion. 
The model has been restricted to
one or more paragraphs.                    -->

<!ENTITY % annotation-xml.model

"(p+)"                                       >

<!– ============================================================= –> <!– MathML 3.0 INVOCATION –> <!– ============================================================= –>

%mathml.dtd;

<!– ================== End MATHML Setup Module ================== –>