Mock Version: 2.15 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/rubygem-bioroebe.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1640228609.890365/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.oth5_k2c:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.oth5_k2c:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '683089a9fe0640fbb42bc95919c34bb8', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1640228609.890365/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.oth5_k2c:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/rubygem-bioroebe.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1640217600 Wrote: /builddir/build/SRPMS/rubygem-bioroebe-0.10.1-1.fc36.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/rubygem-bioroebe.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1640228609.890365/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.oth5_k2c:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.oth5_k2c:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '58f9949247b84a3e9e8c4dd1b7729c84', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1640228609.890365/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.oth5_k2c:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/rubygem-bioroebe.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1640217600 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.HgyUB9 + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf bioroebe-0.10.1 + /usr/bin/gem unpack /builddir/build/SOURCES/bioroebe-0.10.1.gem Unpacked gem: '/builddir/build/BUILD/bioroebe-0.10.1' + /usr/bin/gem spec /builddir/build/SOURCES/bioroebe-0.10.1.gem --ruby + STATUS=0 + '[' 0 -ne 0 ']' + cd bioroebe-0.10.1 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.78CqfI + umask 022 + cd /builddir/build/BUILD + cd bioroebe-0.10.1 + gem build ../bioroebe-0.10.1.gemspec WARNING: open-ended dependency on chemistry_paradise (>= 0) is not recommended use a bounded requirement, such as '~> x.y' WARNING: open-ended dependency on cyberweb (>= 0) is not recommended use a bounded requirement, such as '~> x.y' WARNING: open-ended dependency on colours (>= 0) is not recommended use a bounded requirement, such as '~> x.y' WARNING: open-ended dependency on convert_global_env (>= 0) is not recommended use a bounded requirement, such as '~> x.y' WARNING: open-ended dependency on directory_paradise (>= 0) is not recommended use a bounded requirement, such as '~> x.y' WARNING: open-ended dependency on opn (>= 0) is not recommended use a bounded requirement, such as '~> x.y' WARNING: See https://guides.rubygems.org/specification-reference/ for help Successfully built RubyGem Name: bioroebe Version: 0.10.1 File: bioroebe-0.10.1.gem + mkdir -p ./usr/share/gems + CONFIGURE_ARGS='--with-cflags='\''-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'\'' --with-cxxflags='\''-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'\'' --with-ldflags='\''-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 '\'' ' + gem install -V --local --build-root . --force --document=ri,rdoc bioroebe-0.10.1.gem WARNING: You build with buildroot. Build root: /builddir/build/BUILD/bioroebe-0.10.1 Bin dir: /builddir/build/BUILD/bioroebe-0.10.1/usr/bin Gem home: /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems Plugins dir: /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/plugins /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/LICENSE.md /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/README.md /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/advanced_dotplot /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/align_open_reading_frames /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/all_positions_of_this_nucleotide /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/aminoacid_composition /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/aminoacid_frequencies /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/automatically_rename_this_fasta_file /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/base_composition /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/batch_create_windows_executables /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/biomart_console /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/bioroebe /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/bioroebe_notebook /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/bioshell /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/blosum_2D_table /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/calculate_n50_value /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/chunked_display /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/codon_to_aminoacid /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/colourize_this_fasta_sequence /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/complement /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/complementary_dna_strand /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/complementary_rna_strand /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/compseq /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/consensus_sequence /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/count_AT /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/count_GC /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/create_random_aminoacids /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/decode_this_aminoacid_sequence /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/deduce_aminoacid_sequence /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/deduce_most_likely_aminoacid_sequence /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/display_aminoacid_table /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/display_open_reading_frames /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/dna_to_aminoacid_sequence /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/dna_to_rna /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/downcase_chunked_display /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/download_this_pdb /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/fasta_index /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/fetch_data_from_uniprot /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/filter_away_invalid_nucleotides /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/find_substring /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/genbank_to_fasta /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/hamming_distance /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/input_as_dna /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/is_palindrome /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/leading_five_prime /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/levensthein /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/longest_ORF /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/longest_substring /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/n_stop_codons_in_this_sequence /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/open_reading_frames /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/overwrite_fasta_header /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/palindrome_2D_structure /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/palindrome_generator /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/parse_fasta /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/partner_nucleotide /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/possible_codons_for_this_aminoacid /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/random_dna_sequence /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/random_sequence /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/raw_hamming_distance /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/return_longest_substring_via_LCS_algorithm /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/reverse_complement /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/reverse_sequence /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/ruler /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/scan_this_input_for_startcodons /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/short_aminoacid_letter_from_long_aminoacid_name /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/show_atomic_composition /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/show_codon_usage /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/show_fasta_header /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/show_nucleotide_sequence /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/show_this_codon_table /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/show_this_dna_sequence /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/showorf /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/simplify_fasta /builddir/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1/bin/sort_aminoacid_based_on_its_hydrophobicity 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/builddir/build/BUILD/bioroebe-0.10.1/usr/bin/upcase_this_aminoacid_sequence_and_remove_numbers This project relates to the life sciences, in particular molecular biology and bioinformatics. It is primarily a toolset project, meaning that the code that can be found within this project, ought to be "useful" in daily work setups and routines related to the field of life sciences. The simplest way to use this project is to start the interactive shell, called BioShell. The executable file for the BioShell is simply called: bioshell It resides in the bin/ subdirectory of this gem. It can also be started from ruby code, such as through the following two lines of ruby code: require 'bioroebe' Bioroebe.start_shell Ideally this should work just fine. If not, have a look at your specific GEM_PATH to find out where the bioroebe-related files are kept. "gem install bioroebe" should properly have handled all dependencies for the bioroebe gem. For more documentation, have a look at: https://www.rubydoc.info/gems/bioroebe/0.10.1 Successfully installed bioroebe-0.10.1 Parsing documentation for bioroebe-0.10.1 Parsing sources... 0% [ 1/203] lib/bioroebe.rb 0% [ 2/203] lib/bioroebe/base/base.rb 1% [ 3/203] lib/bioroebe/base/colours.rb 1% [ 4/203] lib/bioroebe/base/colours_for_base/colours_for_base.rb 2% [ 5/203] lib/bioroebe/base/commandline_application/README.md 2% [ 6/203] lib/bioroebe/base/commandline_application/aminoacids.rb 3% [ 7/203] lib/bioroebe/base/commandline_application/commandline_application.rb 3% [ 8/203] lib/bioroebe/base/commandline_application/commandline_arguments.rb 4% [ 9/203] lib/bioroebe/base/commandline_application/directory.rb 4% [10/203] lib/bioroebe/base/commandline_application/extract.rb 5% [11/203] lib/bioroebe/base/commandline_application/misc.rb 5% [12/203] lib/bioroebe/base/commandline_application/opn.rb 6% [13/203] lib/bioroebe/base/commandline_application/reset.rb 6% [14/203] 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lib/bioroebe/toplevel_methods/chunked_display.rb 69% [141/203] lib/bioroebe/toplevel_methods/cliner.rb 69% [142/203] lib/bioroebe/toplevel_methods/complement.rb 70% [143/203] lib/bioroebe/toplevel_methods/convert_global_env.rb 70% [144/203] lib/bioroebe/toplevel_methods/databases.rb 71% [145/203] lib/bioroebe/toplevel_methods/delimiter.rb 71% [146/203] lib/bioroebe/toplevel_methods/digest.rb 72% [147/203] lib/bioroebe/toplevel_methods/download_and_fetch_data.rb 72% [148/203] lib/bioroebe/toplevel_methods/e.rb 73% [149/203] lib/bioroebe/toplevel_methods/editor.rb 73% [150/203] lib/bioroebe/toplevel_methods/esystem.rb 74% [151/203] lib/bioroebe/toplevel_methods/exponential_growth.rb 74% [152/203] lib/bioroebe/toplevel_methods/extract.rb 75% [153/203] lib/bioroebe/toplevel_methods/fasta_and_fastq.rb 75% [154/203] lib/bioroebe/toplevel_methods/file_and_directory_related_actions.rb 76% [155/203] lib/bioroebe/toplevel_methods/frequencies.rb 76% [156/203] lib/bioroebe/toplevel_methods/hamming_distance.rb 77% [157/203] lib/bioroebe/toplevel_methods/infer.rb 77% [158/203] lib/bioroebe/toplevel_methods/is_on_roebe.rb 78% [159/203] lib/bioroebe/toplevel_methods/leading_five_prime_and_trailing_three_prime.rb 78% [160/203] lib/bioroebe/toplevel_methods/levensthein.rb 79% [161/203] lib/bioroebe/toplevel_methods/log_directory.rb 79% [162/203] lib/bioroebe/toplevel_methods/longest_common_substring.rb 80% [163/203] lib/bioroebe/toplevel_methods/map_ncbi_entry_to_eutils_id.rb 80% [164/203] lib/bioroebe/toplevel_methods/matches.rb 81% [165/203] lib/bioroebe/toplevel_methods/misc.rb 81% [166/203] lib/bioroebe/toplevel_methods/nucleotides.rb 82% [167/203] lib/bioroebe/toplevel_methods/number_of_clones.rb 82% [168/203] lib/bioroebe/toplevel_methods/open_in_browser.rb 83% [169/203] lib/bioroebe/toplevel_methods/open_reading_frames.rb 83% [170/203] lib/bioroebe/toplevel_methods/opn.rb 84% [171/203] lib/bioroebe/toplevel_methods/palindromes.rb 84% 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bioroebe-0.10.1 Done installing documentation for bioroebe after 4 seconds 1 gem installed + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.kS8v8a + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/rubygem-bioroebe-0.10.1-1.fc36.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/rubygem-bioroebe-0.10.1-1.fc36.x86_64 ++ dirname /builddir/build/BUILDROOT/rubygem-bioroebe-0.10.1-1.fc36.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/rubygem-bioroebe-0.10.1-1.fc36.x86_64 + cd bioroebe-0.10.1 + mkdir -p /builddir/build/BUILDROOT/rubygem-bioroebe-0.10.1-1.fc36.x86_64/usr/share/gems + cp -a ./usr/share/gems/build_info ./usr/share/gems/cache ./usr/share/gems/doc ./usr/share/gems/extensions ./usr/share/gems/gems ./usr/share/gems/plugins ./usr/share/gems/specifications /builddir/build/BUILDROOT/rubygem-bioroebe-0.10.1-1.fc36.x86_64/usr/share/gems/ + mkdir -p /builddir/build/BUILDROOT/rubygem-bioroebe-0.10.1-1.fc36.x86_64/usr/bin + cp -a ./usr/bin/advanced_dotplot ./usr/bin/align_open_reading_frames ./usr/bin/all_positions_of_this_nucleotide ./usr/bin/aminoacid_composition ./usr/bin/aminoacid_frequencies ./usr/bin/automatically_rename_this_fasta_file ./usr/bin/base_composition ./usr/bin/batch_create_windows_executables ./usr/bin/biomart_console ./usr/bin/bioroebe ./usr/bin/bioroebe_notebook ./usr/bin/bioshell ./usr/bin/blosum_2D_table ./usr/bin/calculate_n50_value ./usr/bin/chunked_display ./usr/bin/codon_to_aminoacid ./usr/bin/colourize_this_fasta_sequence ./usr/bin/complement ./usr/bin/complementary_dna_strand ./usr/bin/complementary_rna_strand ./usr/bin/compseq ./usr/bin/consensus_sequence ./usr/bin/count_AT ./usr/bin/count_GC ./usr/bin/create_random_aminoacids ./usr/bin/decode_this_aminoacid_sequence ./usr/bin/deduce_aminoacid_sequence ./usr/bin/deduce_most_likely_aminoacid_sequence ./usr/bin/display_aminoacid_table ./usr/bin/display_open_reading_frames ./usr/bin/dna_to_aminoacid_sequence ./usr/bin/dna_to_rna ./usr/bin/downcase_chunked_display ./usr/bin/download_this_pdb ./usr/bin/fasta_index ./usr/bin/fetch_data_from_uniprot ./usr/bin/filter_away_invalid_nucleotides ./usr/bin/find_substring ./usr/bin/genbank_to_fasta ./usr/bin/hamming_distance ./usr/bin/input_as_dna ./usr/bin/is_palindrome ./usr/bin/leading_five_prime ./usr/bin/levensthein ./usr/bin/longest_ORF ./usr/bin/longest_substring ./usr/bin/n_stop_codons_in_this_sequence ./usr/bin/open_reading_frames ./usr/bin/overwrite_fasta_header ./usr/bin/palindrome_2D_structure ./usr/bin/palindrome_generator ./usr/bin/parse_fasta ./usr/bin/partner_nucleotide ./usr/bin/possible_codons_for_this_aminoacid ./usr/bin/random_dna_sequence ./usr/bin/random_sequence ./usr/bin/raw_hamming_distance ./usr/bin/return_longest_substring_via_LCS_algorithm ./usr/bin/reverse_complement ./usr/bin/reverse_sequence ./usr/bin/ruler ./usr/bin/scan_this_input_for_startcodons ./usr/bin/short_aminoacid_letter_from_long_aminoacid_name ./usr/bin/show_atomic_composition ./usr/bin/show_codon_usage ./usr/bin/show_fasta_header ./usr/bin/show_nucleotide_sequence ./usr/bin/show_this_codon_table ./usr/bin/show_this_dna_sequence ./usr/bin/showorf ./usr/bin/simplify_fasta ./usr/bin/sort_aminoacid_based_on_its_hydrophobicity ./usr/bin/split_this_fasta_file_into_chromosomes ./usr/bin/strict_filter_away_invalid_aminoacids ./usr/bin/taxonomy ./usr/bin/three_to_one ./usr/bin/to_rna ./usr/bin/trailing_three_prime ./usr/bin/trypsin_digest ./usr/bin/upcase_this_aminoacid_sequence_and_remove_numbers /builddir/build/BUILDROOT/rubygem-bioroebe-0.10.1-1.fc36.x86_64/usr/bin/ + xargs chmod a+x + find /builddir/build/BUILDROOT/rubygem-bioroebe-0.10.1-1.fc36.x86_64/usr/share/gems/gems/bioroebe-0.10.1/bin -type f + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 0.10.1-1.fc36 --unique-debug-suffix -0.10.1-1.fc36.x86_64 --unique-debug-src-base rubygem-bioroebe-0.10.1-1.fc36.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/bioroebe-0.10.1 + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs *** WARNING: ./usr/share/gems/gems/bioroebe-0.10.1/spec/testing_toplevel_method_verbose.rb is executable but has no shebang, removing executable bit *** WARNING: ./usr/share/gems/gems/bioroebe-0.10.1/spec/testing_toplevel_method_url.rb is executable but has no shebang, removing executable bit *** WARNING: ./usr/share/gems/gems/bioroebe-0.10.1/spec/testing_toplevel_method_editor.rb is executable but has no shebang, removing executable bit *** WARNING: ./usr/share/gems/gems/bioroebe-0.10.1/lib/bioroebe/data/phylip/example.phylip is executable but has no shebang, removing executable bit + /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.RiWSDT + umask 022 + cd /builddir/build/BUILD + cd bioroebe-0.10.1 + pushd ./usr/share/gems/gems/bioroebe-0.10.1 ~/build/BUILD/bioroebe-0.10.1/usr/share/gems/gems/bioroebe-0.10.1 ~/build/BUILD/bioroebe-0.10.1 + popd ~/build/BUILD/bioroebe-0.10.1 + RPM_EC=0 ++ jobs -p + exit 0 Processing files: rubygem-bioroebe-0.10.1-1.fc36.noarch Provides: rubygem(bioroebe) = 0.10.1 rubygem-bioroebe = 0.10.1-1.fc36 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/perl /usr/bin/ruby ruby(rubygems) >= 3.2.32 rubygem(chemistry_paradise) rubygem(colours) rubygem(convert_global_env) rubygem(cyberweb) rubygem(directory_paradise) rubygem(opn) Processing files: rubygem-bioroebe-doc-0.10.1-1.fc36.noarch Provides: rubygem-bioroebe-doc = 0.10.1-1.fc36 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/ruby Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/rubygem-bioroebe-0.10.1-1.fc36.x86_64 Wrote: /builddir/build/RPMS/rubygem-bioroebe-0.10.1-1.fc36.noarch.rpm Wrote: /builddir/build/RPMS/rubygem-bioroebe-doc-0.10.1-1.fc36.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.aDLe5x + umask 022 + cd /builddir/build/BUILD + cd bioroebe-0.10.1 + /usr/bin/rm -rf /builddir/build/BUILDROOT/rubygem-bioroebe-0.10.1-1.fc36.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Child return code was: 0