Mock Version: 3.0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/rubygem-BioDSL.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1650251860.987605/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.s33bz180:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.s33bz180:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'f4dd68a9d0e849c28d17a7bfb8b192e4', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1650251860.987605/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.s33bz180:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/rubygem-BioDSL.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1650240000 Wrote: /builddir/build/SRPMS/rubygem-BioDSL-1.0.2-1.fc37.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/rubygem-BioDSL.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1650251860.987605/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.s33bz180:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.s33bz180:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '28587be6a178459299aa2519a318a3e5', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1650251860.987605/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.s33bz180:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/rubygem-BioDSL.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1650240000 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.X1cS0K + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf BioDSL-1.0.2 + /usr/bin/gem unpack /builddir/build/SOURCES/BioDSL-1.0.2.gem Unpacked gem: '/builddir/build/BUILD/BioDSL-1.0.2' + /usr/bin/gem spec /builddir/build/SOURCES/BioDSL-1.0.2.gem --ruby + STATUS=0 + '[' 0 -ne 0 ']' + cd BioDSL-1.0.2 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.BhmoSG + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/BioDSL-1.0.2/.package_note-rubygem-BioDSL-1.0.2-1.fc37.x86_64.ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + '[' -f /usr/lib/rpm/generate-rpm-note.sh ']' + /usr/lib/rpm/generate-rpm-note.sh rubygem-BioDSL 1.0.2-1.fc37 x86_64 + cd BioDSL-1.0.2 + gem build ../BioDSL-1.0.2.gemspec WARNING: license value 'GPL2' is invalid. Use a license identifier from http://spdx.org/licenses or 'Nonstandard' for a nonstandard license. Did you mean 'NGPL'? WARNING: open-ended dependency on haml (>= 4.0.5) is not recommended if haml is semantically versioned, use: add_runtime_dependency 'haml', '~> 4.0', '>= 4.0.5' WARNING: open-ended dependency on RubyInline (>= 3.12.2) is not recommended if RubyInline is semantically versioned, use: add_runtime_dependency 'RubyInline', '~> 3.12', '>= 3.12.2' WARNING: open-ended dependency on narray (>= 0.6.0) is not recommended if narray is semantically versioned, use: add_runtime_dependency 'narray', '~> 0.6', '>= 0.6.0' WARNING: open-ended dependency on mail (>= 2.5.4) is not recommended if mail is semantically versioned, use: add_runtime_dependency 'mail', '~> 2.5', '>= 2.5.4' WARNING: open-ended dependency on msgpack (>= 0.5.8) is not recommended if msgpack is semantically versioned, use: add_runtime_dependency 'msgpack', '~> 0.5', '>= 0.5.8' WARNING: open-ended dependency on gnuplotter (>= 1.0.2) is not recommended if gnuplotter is semantically versioned, use: add_runtime_dependency 'gnuplotter', '~> 1.0', '>= 1.0.2' WARNING: open-ended dependency on parallel (>= 1.0.0) is not recommended if parallel is semantically versioned, use: add_runtime_dependency 'parallel', '~> 1.0', '>= 1.0.0' WARNING: open-ended dependency on pqueue (>= 2.0.2) is not recommended if pqueue is semantically versioned, use: add_runtime_dependency 'pqueue', '~> 2.0', '>= 2.0.2' WARNING: open-ended dependency on terminal-table (>= 1.4.5) is not recommended if terminal-table is semantically versioned, use: add_runtime_dependency 'terminal-table', '~> 1.4', '>= 1.4.5' WARNING: open-ended dependency on tilt (>= 2.0.1) is not recommended if tilt is semantically versioned, use: add_runtime_dependency 'tilt', '~> 2.0', '>= 2.0.1' WARNING: open-ended dependency on bundler (>= 1.7.4, development) is not recommended if bundler is semantically versioned, use: add_development_dependency 'bundler', '~> 1.7', '>= 1.7.4' WARNING: open-ended dependency on simplecov (>= 0.9.2, development) is not recommended if simplecov is semantically versioned, use: add_development_dependency 'simplecov', '~> 0.9', '>= 0.9.2' WARNING: open-ended dependency on mocha (>= 1.0.0, development) is not recommended if mocha is semantically versioned, use: add_development_dependency 'mocha', '~> 1.0', '>= 1.0.0' WARNING: See https://guides.rubygems.org/specification-reference/ for help Successfully built RubyGem Name: BioDSL Version: 1.0.2 File: BioDSL-1.0.2.gem + mkdir -p ./usr/share/gems + CONFIGURE_ARGS='--with-cflags='\''-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'\'' --with-cxxflags='\''-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'\'' --with-ldflags='\''-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 '\'' ' + gem install -V --local --build-root . --force --document=ri,rdoc BioDSL-1.0.2.gem WARNING: You build with buildroot. Build root: /builddir/build/BUILD/BioDSL-1.0.2 Bin dir: /builddir/build/BUILD/BioDSL-1.0.2/usr/bin Gem home: /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems Plugins dir: /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/plugins /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/.gitignore /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/BioDSL.gemspec /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/Gemfile /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/LICENSE /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/README.md /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/Rakefile /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/examples/fastq_to_fasta.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/cary.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/command.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/commands.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/commands/add_key.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/commands/align_seq_mothur.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/commands/analyze_residue_distribution.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/commands/assemble_pairs.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/commands/assemble_seq_idba.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/commands/assemble_seq_ray.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/commands/assemble_seq_spades.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/commands/classify_seq.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/commands/classify_seq_mothur.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/commands/clip_primer.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/commands/cluster_otus.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/commands/collapse_otus.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/commands/collect_otus.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/commands/complement_seq.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/commands/count.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/commands/count_values.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/commands/degap_seq.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/commands/dereplicate_seq.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/commands/dump.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/commands/filter_rrna.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/commands/genecall.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/commands/grab.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/commands/index_taxonomy.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/commands/mask_seq.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/commands/mean_scores.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/commands/merge_pair_seq.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/commands/merge_table.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/commands/merge_values.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/commands/plot_heatmap.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/commands/plot_histogram.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/commands/plot_matches.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/commands/plot_residue_distribution.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/commands/plot_scores.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/commands/random.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/commands/read_fasta.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/commands/read_fastq.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/commands/read_table.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/commands/reverse_seq.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/commands/slice_align.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/commands/slice_seq.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/commands/sort.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/commands/split_pair_seq.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/commands/split_values.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/commands/trim_primer.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/commands/trim_seq.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/commands/uchime_ref.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/commands/uclust.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/commands/unique_values.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/commands/usearch_global.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/commands/usearch_local.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/commands/write_fasta.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/commands/write_fastq.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/commands/write_table.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/commands/write_tree.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/config.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/csv.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/debug.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/fasta.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/fastq.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/filesys.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/fork.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/hamming.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/helpers.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/helpers/aux_helper.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/helpers/email_helper.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/helpers/history_helper.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/helpers/log_helper.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/helpers/options_helper.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/helpers/status_helper.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/html_report.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/math.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/mummer.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/pipeline.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/seq.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/seq/ambiguity.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/seq/assemble.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/seq/backtrack.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/seq/digest.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/seq/dynamic.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/seq/homopolymer.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/seq/kmer.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/seq/levenshtein.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/seq/translate.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/seq/trim.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/serializer.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/stream.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/taxonomy.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/test.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/tmp_dir.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/usearch.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/verbose.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/version.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_add_key.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_align_seq_mothur.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_analyze_residue_distribution.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_assemble_pairs.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_assemble_seq_idba.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_assemble_seq_ray.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_assemble_seq_spades.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_classify_seq.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_classify_seq_mothur.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_clip_primer.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_cluster_otus.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_collapse_otus.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_collect_otus.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_complement_seq.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_count.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_count_values.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_degap_seq.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_dereplicate_seq.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_dump.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_filter_rrna.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_genecall.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_grab.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_index_taxonomy.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_mask_seq.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_mean_scores.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_merge_pair_seq.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_merge_table.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_merge_values.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_plot_heatmap.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_plot_histogram.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_plot_matches.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_plot_residue_distribution.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_plot_scores.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_random.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_read_fasta.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_read_fastq.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_read_table.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_reverse_seq.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_slice_align.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_slice_seq.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_sort.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_split_pair_seq.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_split_values.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_trim_primer.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_trim_seq.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_uchime_ref.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_uclust.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_unique_values.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_usearch_global.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_usearch_local.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_write_fasta.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_write_fastq.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_write_table.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_write_tree.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/helpers/test_options_helper.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/seq/test_assemble.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/seq/test_backtrack.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/seq/test_digest.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/seq/test_dynamic.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/seq/test_homopolymer.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/seq/test_kmer.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/seq/test_translate.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/seq/test_trim.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/test_cary.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/test_command.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/test_csv.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/test_debug.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/test_fasta.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/test_fastq.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/test_filesys.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/test_fork.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/test_math.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/test_mummer.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/test_pipeline.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/test_seq.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/test_serializer.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/test_stream.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/test_taxonomy.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/test_test.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/test_tmp_dir.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/test_usearch.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/test_verbose.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/test/helper.rb /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/www/command.html.haml /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/www/css.html.haml /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/www/input_files.html.haml /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/www/layout.html.haml /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/www/output_files.html.haml /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/www/overview.html.haml /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/www/pipeline.html.haml /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/www/png.html.haml /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/www/status.html.haml /builddir/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2/www/time.html.haml Successfully installed BioDSL-1.0.2 Parsing documentation for BioDSL-1.0.2 Parsing sources... 1% [ 1/96] lib/BioDSL.rb 2% [ 2/96] lib/BioDSL/cary.rb 3% [ 3/96] lib/BioDSL/command.rb 4% [ 4/96] lib/BioDSL/commands.rb 5% [ 5/96] lib/BioDSL/commands/add_key.rb 6% [ 6/96] lib/BioDSL/commands/align_seq_mothur.rb 7% [ 7/96] lib/BioDSL/commands/analyze_residue_distribution.rb 8% [ 8/96] lib/BioDSL/commands/assemble_pairs.rb 9% [ 9/96] lib/BioDSL/commands/assemble_seq_idba.rb 10% [10/96] lib/BioDSL/commands/assemble_seq_ray.rb 11% [11/96] lib/BioDSL/commands/assemble_seq_spades.rb 12% [12/96] lib/BioDSL/commands/classify_seq.rb 13% [13/96] lib/BioDSL/commands/classify_seq_mothur.rb 14% [14/96] lib/BioDSL/commands/clip_primer.rb 15% [15/96] lib/BioDSL/commands/cluster_otus.rb 16% [16/96] lib/BioDSL/commands/collapse_otus.rb 17% [17/96] lib/BioDSL/commands/collect_otus.rb 18% [18/96] lib/BioDSL/commands/complement_seq.rb 19% [19/96] lib/BioDSL/commands/count.rb 20% [20/96] lib/BioDSL/commands/count_values.rb 21% [21/96] lib/BioDSL/commands/degap_seq.rb 22% [22/96] lib/BioDSL/commands/dereplicate_seq.rb 23% [23/96] lib/BioDSL/commands/dump.rb 25% [24/96] lib/BioDSL/commands/filter_rrna.rb 26% [25/96] lib/BioDSL/commands/genecall.rb 27% [26/96] lib/BioDSL/commands/grab.rb 28% [27/96] lib/BioDSL/commands/index_taxonomy.rb 29% [28/96] lib/BioDSL/commands/mask_seq.rb 30% [29/96] lib/BioDSL/commands/mean_scores.rb 31% [30/96] lib/BioDSL/commands/merge_pair_seq.rb 32% [31/96] lib/BioDSL/commands/merge_table.rb 33% [32/96] lib/BioDSL/commands/merge_values.rb 34% [33/96] lib/BioDSL/commands/plot_heatmap.rb 35% [34/96] lib/BioDSL/commands/plot_histogram.rb 36% [35/96] lib/BioDSL/commands/plot_matches.rb 37% [36/96] lib/BioDSL/commands/plot_residue_distribution.rb 38% [37/96] lib/BioDSL/commands/plot_scores.rb 39% [38/96] lib/BioDSL/commands/random.rb 40% [39/96] lib/BioDSL/commands/read_fasta.rb 41% [40/96] lib/BioDSL/commands/read_fastq.rb 42% [41/96] lib/BioDSL/commands/read_table.rb 43% [42/96] lib/BioDSL/commands/reverse_seq.rb 44% [43/96] lib/BioDSL/commands/slice_align.rb 45% [44/96] lib/BioDSL/commands/slice_seq.rb 46% [45/96] lib/BioDSL/commands/sort.rb 47% [46/96] lib/BioDSL/commands/split_pair_seq.rb 48% [47/96] lib/BioDSL/commands/split_values.rb 50% [48/96] lib/BioDSL/commands/trim_primer.rb 51% [49/96] lib/BioDSL/commands/trim_seq.rb 52% [50/96] lib/BioDSL/commands/uchime_ref.rb 53% [51/96] lib/BioDSL/commands/uclust.rb 54% [52/96] lib/BioDSL/commands/unique_values.rb 55% [53/96] lib/BioDSL/commands/usearch_global.rb 56% [54/96] lib/BioDSL/commands/usearch_local.rb 57% [55/96] lib/BioDSL/commands/write_fasta.rb 58% [56/96] lib/BioDSL/commands/write_fastq.rb 59% [57/96] lib/BioDSL/commands/write_table.rb 60% [58/96] lib/BioDSL/commands/write_tree.rb 61% [59/96] lib/BioDSL/config.rb 62% [60/96] lib/BioDSL/csv.rb 63% [61/96] lib/BioDSL/debug.rb 64% [62/96] lib/BioDSL/fasta.rb 65% [63/96] lib/BioDSL/fastq.rb 66% [64/96] lib/BioDSL/filesys.rb 67% [65/96] lib/BioDSL/fork.rb 68% [66/96] lib/BioDSL/hamming.rb 69% [67/96] lib/BioDSL/helpers.rb 70% [68/96] lib/BioDSL/helpers/aux_helper.rb 71% [69/96] lib/BioDSL/helpers/email_helper.rb 72% [70/96] lib/BioDSL/helpers/history_helper.rb 73% [71/96] lib/BioDSL/helpers/log_helper.rb 75% [72/96] lib/BioDSL/helpers/options_helper.rb 76% [73/96] lib/BioDSL/helpers/status_helper.rb 77% [74/96] lib/BioDSL/html_report.rb 78% [75/96] lib/BioDSL/math.rb 79% [76/96] lib/BioDSL/mummer.rb 80% [77/96] lib/BioDSL/pipeline.rb 81% [78/96] lib/BioDSL/seq.rb 82% [79/96] lib/BioDSL/seq/ambiguity.rb 83% [80/96] lib/BioDSL/seq/assemble.rb 84% [81/96] lib/BioDSL/seq/backtrack.rb 85% [82/96] lib/BioDSL/seq/digest.rb 86% [83/96] lib/BioDSL/seq/dynamic.rb 87% [84/96] lib/BioDSL/seq/homopolymer.rb 88% [85/96] lib/BioDSL/seq/kmer.rb 89% [86/96] lib/BioDSL/seq/levenshtein.rb 90% [87/96] lib/BioDSL/seq/translate.rb 91% [88/96] lib/BioDSL/seq/trim.rb 92% [89/96] lib/BioDSL/serializer.rb 93% [90/96] lib/BioDSL/stream.rb 94% [91/96] lib/BioDSL/taxonomy.rb 95% [92/96] lib/BioDSL/test.rb 96% [93/96] lib/BioDSL/tmp_dir.rb 97% [94/96] lib/BioDSL/usearch.rb 98% [95/96] lib/BioDSL/verbose.rb 100% [96/96] lib/BioDSL/version.rb Installing ri documentation for BioDSL-1.0.2 Installing darkfish documentation for BioDSL-1.0.2 Done installing documentation for BioDSL after 3 seconds 1 gem installed + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.3isNUA + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/rubygem-BioDSL-1.0.2-1.fc37.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/rubygem-BioDSL-1.0.2-1.fc37.x86_64 ++ dirname /builddir/build/BUILDROOT/rubygem-BioDSL-1.0.2-1.fc37.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/rubygem-BioDSL-1.0.2-1.fc37.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/BioDSL-1.0.2/.package_note-rubygem-BioDSL-1.0.2-1.fc37.x86_64.ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd BioDSL-1.0.2 + mkdir -p /builddir/build/BUILDROOT/rubygem-BioDSL-1.0.2-1.fc37.x86_64/usr/share/gems + cp -a ./usr/share/gems/build_info ./usr/share/gems/cache ./usr/share/gems/doc ./usr/share/gems/extensions ./usr/share/gems/gems ./usr/share/gems/plugins ./usr/share/gems/specifications /builddir/build/BUILDROOT/rubygem-BioDSL-1.0.2-1.fc37.x86_64/usr/share/gems/ + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 1.0.2-1.fc37 --unique-debug-suffix -1.0.2-1.fc37.x86_64 --unique-debug-src-base rubygem-BioDSL-1.0.2-1.fc37.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/BioDSL-1.0.2 + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/test_verbose.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/test_usearch.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/test_tmp_dir.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/test_test.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/test_taxonomy.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/test_stream.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/test_serializer.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/test_seq.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/test_pipeline.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/test_mummer.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/test_math.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/test_fork.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/test_filesys.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/test_fastq.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/test_fasta.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/test_debug.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/test_csv.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/test_command.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/test_cary.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/seq/test_trim.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/seq/test_translate.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/seq/test_kmer.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/seq/test_homopolymer.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/seq/test_dynamic.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/seq/test_digest.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/seq/test_backtrack.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/seq/test_assemble.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/helpers/test_options_helper.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_write_tree.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_write_table.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_write_fastq.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_write_fasta.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_usearch_local.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_usearch_global.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_unique_values.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_uclust.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_uchime_ref.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_trim_seq.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_trim_primer.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_split_values.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_split_pair_seq.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_sort.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_slice_seq.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_slice_align.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_reverse_seq.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_read_table.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_read_fastq.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_read_fasta.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_random.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_plot_scores.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_plot_residue_distribution.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_plot_matches.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_plot_histogram.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_plot_heatmap.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_merge_values.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_merge_table.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_merge_pair_seq.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_mean_scores.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_mask_seq.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_index_taxonomy.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_grab.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_genecall.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_filter_rrna.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_dump.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_dereplicate_seq.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_degap_seq.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_count_values.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_count.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_complement_seq.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_collect_otus.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_collapse_otus.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_cluster_otus.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_clip_primer.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_classify_seq_mothur.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_classify_seq.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_assemble_seq_spades.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_assemble_seq_ray.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_assemble_seq_idba.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_assemble_pairs.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_analyze_residue_distribution.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_align_seq_mothur.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/BioDSL-1.0.2/test/BioDSL/commands/test_add_key.rb from /usr/bin/env ruby to #!/usr/bin/ruby *** WARNING: ./usr/share/gems/gems/BioDSL-1.0.2/lib/BioDSL/tmp_dir.rb is executable but has no shebang, removing executable bit + /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.n9OtFH + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/BioDSL-1.0.2/.package_note-rubygem-BioDSL-1.0.2-1.fc37.x86_64.ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + '[' -f /usr/lib/rpm/generate-rpm-note.sh ']' + /usr/lib/rpm/generate-rpm-note.sh rubygem-BioDSL 1.0.2-1.fc37 x86_64 + cd BioDSL-1.0.2 + pushd ./usr/share/gems/gems/BioDSL-1.0.2 ~/build/BUILD/BioDSL-1.0.2/usr/share/gems/gems/BioDSL-1.0.2 ~/build/BUILD/BioDSL-1.0.2 + popd ~/build/BUILD/BioDSL-1.0.2 + RPM_EC=0 ++ jobs -p + exit 0 Processing files: rubygem-BioDSL-1.0.2-1.fc37.noarch Provides: rubygem(BioDSL) = 1.0.2 rubygem-BioDSL = 1.0.2-1.fc37 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ruby(rubygems) rubygem(RubyInline) >= 3.12.2 rubygem(gnuplotter) >= 1.0.2 rubygem(haml) >= 4.0.5 rubygem(mail) >= 2.5.4 rubygem(msgpack) >= 0.5.8 rubygem(narray) >= 0.6.0 rubygem(parallel) >= 1.0.0 rubygem(pqueue) >= 2.0.2 rubygem(terminal-table) >= 1.4.5 rubygem(tilt) >= 2.0.1 Processing files: rubygem-BioDSL-doc-1.0.2-1.fc37.noarch Provides: rubygem-BioDSL-doc = 1.0.2-1.fc37 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/ruby Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/rubygem-BioDSL-1.0.2-1.fc37.x86_64 Wrote: /builddir/build/RPMS/rubygem-BioDSL-1.0.2-1.fc37.noarch.rpm Wrote: /builddir/build/RPMS/rubygem-BioDSL-doc-1.0.2-1.fc37.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.uRljFL + umask 022 + cd /builddir/build/BUILD + cd BioDSL-1.0.2 + /usr/bin/rm -rf /builddir/build/BUILDROOT/rubygem-BioDSL-1.0.2-1.fc37.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Child return code was: 0