class Bio::BaseSpace::Variant

Variant model.

Public Class Methods

new() click to toggle source

Create a new Variant instance.

# File lib/basespace/model/variant.rb, line 23
def initialize
  @swagger_types = {
    'CHROM'         => 'str',                 
    'ALT'           => 'str',
    'ID'            => 'list<Str>',
    'SampleFormat'  => 'dict',
    'FILTER'        => 'str',
    'INFO'          => 'dict',
    'POS'           => 'int',
    'QUAL'          => 'int',
    'REF'           => 'str',
  }
  @attributes = {
    'CHROM'         => nil,
    'ALT'           => nil,
    'ID'            => nil,
    'SampleFormat'  => nil,
    'FILTER'        => nil,
    'INFO'          => nil,
    'POS'           => nil,
    'QUAL'          => nil,
    'REF'           => nil,
  }
end

Public Instance Methods

to_s() click to toggle source

Return the genomic coordinate and ID of the variant as string.

# File lib/basespace/model/variant.rb, line 49
def to_s
  return "Variant - #{get_attr('CHROM')}: #{get_attr('POS')} id=#{get_attr('Id')}"
end