module EnsemblRest::Variation
Public Class Methods
vep_id(id, species, opts = {})
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Fetch variant consequences based on a variation identifier
# File lib/bio-ensembl-rest/variation.rb, line 6 def self.vep_id(id, species, opts = {}) opts = EnsemblRest.parse_options opts path = EnsemblRest.build_path "/vep/#{species}/id/#{id}/consequences", opts if opts['content-type'] == 'ruby' plain_opts = opts.clone plain_opts['content-type'] = 'application/json' return JSON.parse vep_id id, species, plain_opts end return EnsemblRest.fetch_data path, opts, 'variation' end
vep_region(allele, region, species, opts = {})
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Fetch variant consequences
# File lib/bio-ensembl-rest/variation.rb, line 22 def self.vep_region(allele, region, species, opts = {}) opts = EnsemblRest.parse_options opts path = EnsemblRest.build_path "/vep/#{species}/#{region}/#{allele}/consequences", opts # TODO: ruby object? if opts['content-type'] == 'ruby' plain_opts = opts.clone plain_opts['content-type'] = 'application/json' return JSON.parse vep_region allele, region, species, plain_opts end return EnsemblRest.fetch_data path, opts, 'taxonomy' end