Mock Version: 3.0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/rubygem-bio-sam-mutation.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1650899943.992233/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f26ce7cee90>timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.i39pvft7:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True)
Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.i39pvft7:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'e76db29b55454a628975288591dd7ecd', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1650899943.992233/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.i39pvft7:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/rubygem-bio-sam-mutation.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1650240000
Wrote: /builddir/build/SRPMS/rubygem-bio-sam-mutation-0.4.1-1.fc37.src.rpm
Child return code was: 0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/rubygem-bio-sam-mutation.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1650899943.992233/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f26ce7cee90>timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.i39pvft7:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True)
Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.i39pvft7:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'b46ba94263064adfa61dad755682b34c', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1650899943.992233/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.i39pvft7:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/rubygem-bio-sam-mutation.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1650240000
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.wa2zbn
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf bio-sam-mutation-0.4.1
+ /usr/bin/gem unpack /builddir/build/SOURCES/bio-sam-mutation-0.4.1.gem
Unpacked gem: '/builddir/build/BUILD/bio-sam-mutation-0.4.1'
+ /usr/bin/gem spec /builddir/build/SOURCES/bio-sam-mutation-0.4.1.gem --ruby
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd bio-sam-mutation-0.4.1
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.y3cHwl
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/bio-sam-mutation-0.4.1/.package_note-rubygem-bio-sam-mutation-0.4.1-1.fc37.x86_64.ld'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ '[' -f /usr/lib/rpm/generate-rpm-note.sh ']'
+ /usr/lib/rpm/generate-rpm-note.sh rubygem-bio-sam-mutation 0.4.1-1.fc37 x86_64
+ cd bio-sam-mutation-0.4.1
+ gem build ../bio-sam-mutation-0.4.1.gemspec
WARNING:  open-ended dependency on bio (>= 1.4.2) is not recommended
  if bio is semantically versioned, use:
    add_runtime_dependency 'bio', '~> 1.4', '>= 1.4.2'
WARNING:  open-ended dependency on trollop (>= 0) is not recommended
  use a bounded requirement, such as '~> x.y'
WARNING:  open-ended dependency on shoulda (>= 0, development) is not recommended
  use a bounded requirement, such as '~> x.y'
WARNING:  open-ended dependency on simplecov (>= 0, development) is not recommended
  use a bounded requirement, such as '~> x.y'
WARNING:  open-ended dependency on bundler (>= 0, development) is not recommended
  use a bounded requirement, such as '~> x.y'
WARNING:  See https://guides.rubygems.org/specification-reference/ for help
  Successfully built RubyGem
  Name: bio-sam-mutation
  Version: 0.4.1
  File: bio-sam-mutation-0.4.1.gem
+ mkdir -p ./usr/share/gems
+ CONFIGURE_ARGS='--with-cflags='\''-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'\'' --with-cxxflags='\''-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'\'' --with-ldflags='\''-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 '\'' '
+ gem install -V --local --build-root . --force --document=ri,rdoc bio-sam-mutation-0.4.1.gem
WARNING:  You build with buildroot.
  Build root: /builddir/build/BUILD/bio-sam-mutation-0.4.1
  Bin dir: /builddir/build/BUILD/bio-sam-mutation-0.4.1/usr/bin
  Gem home: /builddir/build/BUILD/bio-sam-mutation-0.4.1/usr/share/gems
  Plugins dir: /builddir/build/BUILD/bio-sam-mutation-0.4.1/usr/share/gems/plugins
/builddir/build/BUILD/bio-sam-mutation-0.4.1/usr/share/gems/gems/bio-sam-mutation-0.4.1/.document
/builddir/build/BUILD/bio-sam-mutation-0.4.1/usr/share/gems/gems/bio-sam-mutation-0.4.1/.travis.yml
/builddir/build/BUILD/bio-sam-mutation-0.4.1/usr/share/gems/gems/bio-sam-mutation-0.4.1/Gemfile
/builddir/build/BUILD/bio-sam-mutation-0.4.1/usr/share/gems/gems/bio-sam-mutation-0.4.1/LICENSE.txt
/builddir/build/BUILD/bio-sam-mutation-0.4.1/usr/share/gems/gems/bio-sam-mutation-0.4.1/README.md
/builddir/build/BUILD/bio-sam-mutation-0.4.1/usr/share/gems/gems/bio-sam-mutation-0.4.1/README.rdoc
/builddir/build/BUILD/bio-sam-mutation-0.4.1/usr/share/gems/gems/bio-sam-mutation-0.4.1/Rakefile
/builddir/build/BUILD/bio-sam-mutation-0.4.1/usr/share/gems/gems/bio-sam-mutation-0.4.1/bin/mutations
/builddir/build/BUILD/bio-sam-mutation-0.4.1/usr/share/gems/gems/bio-sam-mutation-0.4.1/bin/sam-mutation
/builddir/build/BUILD/bio-sam-mutation-0.4.1/usr/share/gems/gems/bio-sam-mutation-0.4.1/lib/bio-sam-mutation.rb
/builddir/build/BUILD/bio-sam-mutation-0.4.1/usr/share/gems/gems/bio-sam-mutation-0.4.1/lib/bio-sam-mutation/bio/alignment/cigar.rb
/builddir/build/BUILD/bio-sam-mutation-0.4.1/usr/share/gems/gems/bio-sam-mutation-0.4.1/lib/bio-sam-mutation/bio/alignment/iterate_pairs.rb
/builddir/build/BUILD/bio-sam-mutation-0.4.1/usr/share/gems/gems/bio-sam-mutation-0.4.1/lib/bio-sam-mutation/bio/db/alignment.rb
/builddir/build/BUILD/bio-sam-mutation-0.4.1/usr/share/gems/gems/bio-sam-mutation-0.4.1/lib/bio-sam-mutation/bio/db/tag.rb
/builddir/build/BUILD/bio-sam-mutation-0.4.1/usr/share/gems/gems/bio-sam-mutation-0.4.1/lib/bio-sam-mutation/bio/db/tag/md.rb
/builddir/build/BUILD/bio-sam-mutation-0.4.1/usr/share/gems/gems/bio-sam-mutation-0.4.1/lib/bio-sam-mutation/bio/mutantallele.rb
/builddir/build/BUILD/bio-sam-mutation-0.4.1/usr/share/gems/gems/bio-sam-mutation-0.4.1/lib/bio-sam-mutation/bio/mutation.rb
/builddir/build/BUILD/bio-sam-mutation-0.4.1/usr/share/gems/gems/bio-sam-mutation-0.4.1/lib/bio-sam-mutation/bio/mutation_array.rb
/builddir/build/BUILD/bio-sam-mutation-0.4.1/usr/share/gems/gems/bio-sam-mutation-0.4.1/lib/bio-sam-mutation/bio/vephgvs.rb
/builddir/build/BUILD/bio-sam-mutation-0.4.1/usr/share/gems/gems/bio-sam-mutation-0.4.1/lib/bio-sam-mutation/mutationscli.rb
/builddir/build/BUILD/bio-sam-mutation-0.4.1/usr/share/gems/gems/bio-sam-mutation-0.4.1/test/helper.rb
/builddir/build/BUILD/bio-sam-mutation-0.4.1/usr/share/gems/gems/bio-sam-mutation-0.4.1/test/test_cigar.rb
/builddir/build/BUILD/bio-sam-mutation-0.4.1/usr/share/gems/gems/bio-sam-mutation-0.4.1/test/test_mdtag.rb
/builddir/build/BUILD/bio-sam-mutation-0.4.1/usr/share/gems/gems/bio-sam-mutation-0.4.1/test/test_mutant_allele.rb
/builddir/build/BUILD/bio-sam-mutation-0.4.1/usr/share/gems/gems/bio-sam-mutation-0.4.1/test/test_mutation.rb
/builddir/build/BUILD/bio-sam-mutation-0.4.1/usr/share/gems/gems/bio-sam-mutation-0.4.1/test/test_mutation_array.rb
/builddir/build/BUILD/bio-sam-mutation-0.4.1/usr/share/gems/gems/bio-sam-mutation-0.4.1/test/test_sam.rb
/builddir/build/BUILD/bio-sam-mutation-0.4.1/usr/share/gems/gems/bio-sam-mutation-0.4.1/test/test_vep_hgvs.rb
/builddir/build/BUILD/bio-sam-mutation-0.4.1/usr/bin/mutations
/builddir/build/BUILD/bio-sam-mutation-0.4.1/usr/bin/sam-mutation
Successfully installed bio-sam-mutation-0.4.1
Parsing documentation for bio-sam-mutation-0.4.1
Parsing sources...
  7% [ 1/14]  LICENSE.txt
 14% [ 2/14]  README.md
 21% [ 3/14]  README.rdoc
 28% [ 4/14]  lib/bio-sam-mutation.rb
 35% [ 5/14]  lib/bio-sam-mutation/bio/alignment/cigar.rb
 42% [ 6/14]  lib/bio-sam-mutation/bio/alignment/iterate_pairs.rb
 50% [ 7/14]  lib/bio-sam-mutation/bio/db/alignment.rb
 57% [ 8/14]  lib/bio-sam-mutation/bio/db/tag.rb
 64% [ 9/14]  lib/bio-sam-mutation/bio/db/tag/md.rb
 71% [10/14]  lib/bio-sam-mutation/bio/mutantallele.rb
 78% [11/14]  lib/bio-sam-mutation/bio/mutation.rb
 85% [12/14]  lib/bio-sam-mutation/bio/mutation_array.rb
 92% [13/14]  lib/bio-sam-mutation/bio/vephgvs.rb
100% [14/14]  lib/bio-sam-mutation/mutationscli.rb
Installing ri documentation for bio-sam-mutation-0.4.1
Installing darkfish documentation for bio-sam-mutation-0.4.1
Done installing documentation for bio-sam-mutation after 0 seconds
1 gem installed
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.AAdfvx
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/rubygem-bio-sam-mutation-0.4.1-1.fc37.x86_64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/rubygem-bio-sam-mutation-0.4.1-1.fc37.x86_64
++ dirname /builddir/build/BUILDROOT/rubygem-bio-sam-mutation-0.4.1-1.fc37.x86_64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/rubygem-bio-sam-mutation-0.4.1-1.fc37.x86_64
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/bio-sam-mutation-0.4.1/.package_note-rubygem-bio-sam-mutation-0.4.1-1.fc37.x86_64.ld'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd bio-sam-mutation-0.4.1
+ mkdir -p /builddir/build/BUILDROOT/rubygem-bio-sam-mutation-0.4.1-1.fc37.x86_64/usr/share/gems
+ cp -a ./usr/share/gems/build_info ./usr/share/gems/cache ./usr/share/gems/doc ./usr/share/gems/extensions ./usr/share/gems/gems ./usr/share/gems/plugins ./usr/share/gems/specifications /builddir/build/BUILDROOT/rubygem-bio-sam-mutation-0.4.1-1.fc37.x86_64/usr/share/gems/
+ mkdir -p /builddir/build/BUILDROOT/rubygem-bio-sam-mutation-0.4.1-1.fc37.x86_64/usr/bin
+ cp -a ./usr/bin/mutations ./usr/bin/sam-mutation /builddir/build/BUILDROOT/rubygem-bio-sam-mutation-0.4.1-1.fc37.x86_64/usr/bin/
+ find /builddir/build/BUILDROOT/rubygem-bio-sam-mutation-0.4.1-1.fc37.x86_64/usr/share/gems/gems/bio-sam-mutation-0.4.1/bin -type f
+ xargs chmod a+x
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 0.4.1-1.fc37 --unique-debug-suffix -0.4.1-1.fc37.x86_64 --unique-debug-src-base rubygem-bio-sam-mutation-0.4.1-1.fc37.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/bio-sam-mutation-0.4.1
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
*** WARNING: ./usr/share/gems/gems/bio-sam-mutation-0.4.1/test/test_cigar.rb is executable but has no shebang, removing executable bit
*** WARNING: ./usr/share/gems/gems/bio-sam-mutation-0.4.1/lib/bio-sam-mutation/bio/db/tag/md.rb is executable but has no shebang, removing executable bit
mangling shebang in /usr/share/gems/gems/bio-sam-mutation-0.4.1/bin/sam-mutation from /usr/bin/env ruby to #!/usr/bin/ruby
mangling shebang in /usr/share/gems/gems/bio-sam-mutation-0.4.1/bin/mutations from /usr/bin/env ruby to #!/usr/bin/ruby
+ /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0
+ /usr/lib/rpm/redhat/brp-python-hardlink
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.scMQdL
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/bio-sam-mutation-0.4.1/.package_note-rubygem-bio-sam-mutation-0.4.1-1.fc37.x86_64.ld'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ '[' -f /usr/lib/rpm/generate-rpm-note.sh ']'
+ /usr/lib/rpm/generate-rpm-note.sh rubygem-bio-sam-mutation 0.4.1-1.fc37 x86_64
+ cd bio-sam-mutation-0.4.1
+ pushd ./usr/share/gems/gems/bio-sam-mutation-0.4.1
~/build/BUILD/bio-sam-mutation-0.4.1/usr/share/gems/gems/bio-sam-mutation-0.4.1 ~/build/BUILD/bio-sam-mutation-0.4.1
+ popd
~/build/BUILD/bio-sam-mutation-0.4.1
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: rubygem-bio-sam-mutation-0.4.1-1.fc37.noarch
Provides: rubygem(bio-sam-mutation) = 0.4.1 rubygem-bio-sam-mutation = 0.4.1-1.fc37
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: (rubygem(bio-samtools) >= 2.3.4 with rubygem(bio-samtools) < 2.4) (rubygem(oj) >= 2.14 with rubygem(oj) < 3) (rubygem(rake) >= 0.9 with rubygem(rake) < 1) /usr/bin/ruby ruby(rubygems) rubygem(bio) >= 1.4.2 rubygem(bio-ensembl-rest) = 0.2.0 rubygem(trollop)
Processing files: rubygem-bio-sam-mutation-doc-0.4.1-1.fc37.noarch
Provides: rubygem-bio-sam-mutation-doc = 0.4.1-1.fc37
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/rubygem-bio-sam-mutation-0.4.1-1.fc37.x86_64
Wrote: /builddir/build/RPMS/rubygem-bio-sam-mutation-0.4.1-1.fc37.noarch.rpm
Wrote: /builddir/build/RPMS/rubygem-bio-sam-mutation-doc-0.4.1-1.fc37.noarch.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.G5vJyH
+ umask 022
+ cd /builddir/build/BUILD
+ cd bio-sam-mutation-0.4.1
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/rubygem-bio-sam-mutation-0.4.1-1.fc37.x86_64
+ RPM_EC=0
++ jobs -p
+ exit 0
Child return code was: 0