class Bio::Velvet::Result

Attributes

result_directory[RW]
velvetg_stderr[RW]
velvetg_stdout[RW]
velveth_stderr[RW]
velveth_stdout[RW]

Public Instance Methods

contigs_path() click to toggle source

Path to the contigs.fa output from velvetg

# File lib/bio-velvet/runner.rb, line 126
def contigs_path
  File.join result_directory, 'contigs.fa'
end
last_graph(options=nil) click to toggle source

Return a Bio::Velvet::Graph object built from the LastGraph file. The options for parsing are as per Bio::Velvet::Graph#parse_from_file

# File lib/bio-velvet/runner.rb, line 137
def last_graph(options=nil)
  Bio::Velvet::Graph.parse_from_file(last_graph_path, options)
end
last_graph_path() click to toggle source

Path to the LastGraph output from velvetg

# File lib/bio-velvet/runner.rb, line 121
def last_graph_path
  File.join result_directory, 'LastGraph'
end
stats_path() click to toggle source

Path to the stats.txt output from velvetg

# File lib/bio-velvet/runner.rb, line 131
def stats_path
  File.join result_directory, 'stats.txt'
end