class Bio::Velvet::Result
Attributes
result_directory[RW]
velvetg_stderr[RW]
velvetg_stdout[RW]
velveth_stderr[RW]
velveth_stdout[RW]
Public Instance Methods
contigs_path()
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Path to the contigs.fa output from velvetg
# File lib/bio-velvet/runner.rb, line 126 def contigs_path File.join result_directory, 'contigs.fa' end
last_graph(options=nil)
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Return a Bio::Velvet::Graph
object built from the LastGraph file. The options for parsing are as per Bio::Velvet::Graph#parse_from_file
# File lib/bio-velvet/runner.rb, line 137 def last_graph(options=nil) Bio::Velvet::Graph.parse_from_file(last_graph_path, options) end
last_graph_path()
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Path to the LastGraph output from velvetg
# File lib/bio-velvet/runner.rb, line 121 def last_graph_path File.join result_directory, 'LastGraph' end
stats_path()
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Path to the stats.txt output from velvetg
# File lib/bio-velvet/runner.rb, line 131 def stats_path File.join result_directory, 'stats.txt' end