class Bio::PhyloXML::BinaryCharacters
Description¶ ↑
The names and/or counts of binary characters present, gained, and lost at the root of a clade.
Attributes
absent[RW]
absent_count[R]
bc_type[RW]
gained[RW]
gained_count[R]
lost[RW]
lost_count[R]
present[RW]
present_count[R]
Public Class Methods
new()
click to toggle source
# File lib/bio-phyloxml/phyloxml_elements.rb 1060 def initialize 1061 @gained = [] 1062 @lost = [] 1063 @present = [] 1064 @absent = [] 1065 end
Public Instance Methods
absent_count=(str)
click to toggle source
# File lib/bio-phyloxml/phyloxml_elements.rb 1056 def absent_count=(str) 1057 @absent_count = str.to_i 1058 end
gained_count=(str)
click to toggle source
# File lib/bio-phyloxml/phyloxml_elements.rb 1044 def gained_count=(str) 1045 @gained_count = str.to_i 1046 end
lost_count=(str)
click to toggle source
# File lib/bio-phyloxml/phyloxml_elements.rb 1048 def lost_count=(str) 1049 @lost_count = str.to_i 1050 end
present_count=(str)
click to toggle source
# File lib/bio-phyloxml/phyloxml_elements.rb 1052 def present_count=(str) 1053 @present_count = str.to_i 1054 end
to_xml()
click to toggle source
Converts elements to xml representation. Called by PhyloXML::Writer
class.
# File lib/bio-phyloxml/phyloxml_elements.rb 1068 def to_xml 1069 bc = LibXML::XML::Node.new('binary_characters') 1070 bc['type'] = @bc_type 1071 PhyloXML::Writer.generate_xml(bc, self, [ 1072 [:attr, 'gained_count'], 1073 [:attr, 'lost_count'], 1074 [:attr, 'present_count'], 1075 [:attr, 'absent_count']]) 1076 1077 if not @gained.empty? 1078 gained_xml = LibXML::XML::Node.new('gained') 1079 PhyloXML::Writer.generate_xml(gained_xml, self, [[:simplearr, 'bc', @gained]]) 1080 bc << gained_xml 1081 end 1082 1083 if not @lost.empty? 1084 lost_xml = LibXML::XML::Node.new('lost') 1085 PhyloXML::Writer.generate_xml(lost_xml, self, [[:simplearr, 'bc', @lost]]) 1086 bc << lost_xml 1087 end 1088 1089 if not @present.empty? 1090 present_xml = LibXML::XML::Node.new('present') 1091 PhyloXML::Writer.generate_xml(present_xml, self, [[:simplearr, 'bc', @present]]) 1092 bc << present_xml 1093 end 1094 1095 if not @absent.empty? 1096 absent_xml = LibXML::XML::Node.new('absent') 1097 PhyloXML::Writer.generate_xml(absent_xml, self, [[:simplearr, 'bc', @absent]]) 1098 bc << absent_xml 1099 end 1100 1101 return bc 1102 end