Table of Contents - exodb-0.1.3 Documentation
Classes and Modules
- Exodb
- Exodb::Aa
- Exodb::Cell
- Exodb::Change
- Exodb::Chrref
- Exodb::CreateUserError
- Exodb::Dataset
- Exodb::Ensembl
- Exodb::Ensembl::REST
- Exodb::Gene
- Exodb::GeneLocationField
- Exodb::GeneLocationField::ClassMethods
- Exodb::Generef
- Exodb::InvalidResponse
- Exodb::Isoform
- Exodb::Lossgain
- Exodb::Mapping
- Exodb::Miriam
- Exodb::Miriam::REST
- Exodb::Occurrent
- Exodb::Offexon
- Exodb::Onexon
- Exodb::Reference
- Exodb::Region
- Exodb::Source
- Exodb::Splice
- Exodb::Utils
- Exodb::Utr
- Exodb::VarLocationField
- Exodb::VarLocationField::ClassMethods
- Exodb::Variant
- Exodb::Variantref
- Exodb::XrefsField
- Exodb::XrefsField::ClassMethods
- String
- VCF
- VCF::Variant
Methods
- ::convert — Exodb::Mapping
- ::expanding — Exodb::Generef
- ::load_assembly_mapping! — Exodb::Mapping
- ::new — VCF
- ::new — VCF::Variant
- ::translate! — Exodb::Cell
- #add_to_cell — Exodb::Variant
- #add_to_dataset — Exodb::Cell
- #add_to_sample — Exodb::Variant
- #alternate — Exodb::Variant
- #apply_filter — Exodb::Variant
- #assembly — Exodb
- #assembly_map — Exodb::Ensembl::REST
- #begin — Exodb::GeneLocationField
- #can_translated? — Exodb::Generef
- #cds_location — Exodb::Isoform
- #cds_seq — Exodb::Isoform
- #chromosome — Exodb::GeneLocationField
- #chromosome — Exodb::VarLocationField
- #codon_at — Exodb::Isoform
- #connect — Exodb
- #convert — Exodb::Mapping
- #convlocation= — Exodb::VarLocationField
- #count_allele — String
- #create_admin — Exodb
- #create_rouser — Exodb
- #create_rwuser — Exodb
- #create_user — Exodb
- #current_database — Exodb
- #dl_occurrent! — Exodb::Generef
- #dl_seq! — Exodb::GeneLocationField
- #dl_symbol! — Exodb::Generef
- #effect_pred — Exodb::Isoform
- #end — Exodb::GeneLocationField
- #exon_location — Exodb::Isoform
- #fileformat — VCF
- #genbank_loc — Exodb::Isoform
- #genomic2cds_pos — Exodb::Isoform
- #genomic2prot_pos — Exodb::Isoform
- #get — Exodb::Ensembl::REST
- #get_splice — Exodb::GeneLocationField
- #get_xref — Exodb::XrefsField
- #guess_miriam — Exodb::Utils
- #has_isoforms? — Exodb::Generef
- #has_sequence? — Exodb::Generef
- #has_splices? — Exodb::Generef
- #id — String
- #is_hgvs? — String
- #is_loc? — String
- #is_miriam? — String
- #is_pileup_var? — String
- #load_indel_from_csv — Exodb::Utils
- #load_sample_from_csv — Exodb::Utils
- #load_snv_from_csv — Exodb::Utils
- #load_splice_from_csv — Exodb::Utils
- #load_variant_from_merge — Exodb::Utils
- #location= — Exodb::GeneLocationField
- #location= — Exodb::VarLocationField
- #location_str — Exodb::GeneLocationField
- #location_str — Exodb::VarLocationField
- #locstr — Exodb::GeneLocationField
- #longest_isoform — Exodb::Generef
- #longest_splice — Exodb::Generef
- #mrna_len — Exodb::Isoform
- #mrna_seq — Exodb::Isoform
- #namespace — String
- #noverbose — Exodb
- #open — VCF
- #parse — VCF
- #parse! — VCF::Variant
- #parse_alt — VCF
- #parse_contig — VCF
- #parse_data — VCF
- #parse_filter — VCF
- #parse_format — VCF
- #parse_format — VCF::Variant
- #parse_hgvs — String
- #parse_info — VCF
- #parse_info — VCF::Variant
- #parse_loc — String
- #parse_locstr — Exodb::VarLocationField
- #parse_meta — VCF
- #parse_pileup_var — String
- #prot_len — Exodb::Isoform
- #prot_seq — Exodb::Isoform
- #putst — Exodb
- #putstv — Exodb
- #resolve — String
- #sample_num — VCF
- #sequence_region — Exodb::Ensembl::REST
- #session — Exodb
- #sessionload! — Exodb
- #splice_rel_location — Exodb::Isoform
- #start — Exodb::GeneLocationField
- #stop — Exodb::GeneLocationField
- #symbol — Exodb::Generef
- #to_seq — Exodb::GeneLocationField
- #translate! — Exodb::Cell
- #update_oid — Exodb::Variant
- #upload_generef_from_gff3 — Exodb::Utils
- #utr3location — Exodb::Isoform
- #utr5location — Exodb::Isoform
- #variant_num — VCF
- #vep_hgvs_get — Exodb::Ensembl::REST
- #vep_region_get — Exodb::Ensembl::REST
- #verbose — Exodb
- #where_cover — Exodb::GeneLocationField::ClassMethods
- #where_in — Exodb::GeneLocationField::ClassMethods
- #where_intersect — Exodb::GeneLocationField::ClassMethods
- #where_ups_cover — Exodb::GeneLocationField::ClassMethods
- #where_xrefs — Exodb::XrefsField::ClassMethods
- #whole_seq — Exodb::GeneLocationField