class Genome::Pipeline::ProdigalFilter
Public Instance Methods
call()
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Calls superclass method
Genome::Pipeline::Filter#call
# File lib/genome/pipeline/prodigal_filter.rb, line 8 def call @result = run_prodigal super end
run_prodigal()
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# File lib/genome/pipeline/prodigal_filter.rb, line 13 def run_prodigal @genome.fasta do |path| stdin, stdout, stderr = Open3.popen3("prodigal -f gff -i #{path}") Features.from_gff(stdout.readlines) end end