class GenomerPluginView

Public Class Methods

convert_command_line_flags(flags) click to toggle source
# File lib/genomer-plugin-view.rb, line 15
def self.convert_command_line_flags(flags)
  flags.inject(Hash.new) do |hash,(k,v)|
    k = case k
    when :identifier                then k
    when :prefix                    then k
    when :generate_encoded_features then :encoded
    when :reset_locus_numbering     then :reset
    else nil
    end

    hash[k] = v if k
    hash
  end
end
fetch_view(view) click to toggle source
# File lib/genomer-plugin-view.rb, line 10
def self.fetch_view(view)
  require 'genomer-plugin-view/' + view
  const_get(view.capitalize)
end

Public Instance Methods

help() click to toggle source
# File lib/genomer-plugin-view.rb, line 30
  def help
    message = <<-STRING.unindent
      Run `genomer man view COMMAND` to review available formats
      Where COMMAND is one of the following:
    STRING

    message + Dir[File.dirname(__FILE__) + '/genomer-plugin-view/*.rb'].
      map{|f| File.basename(f).gsub('.rb','')}.
      delete_if{|i| i == 'version'}.
      delete_if{|i| i == 'gff_record_helper'}.
      sort.
      map{|i| " " * 2 + i}.
      join("\n") + "\n"
  end
run() click to toggle source
# File lib/genomer-plugin-view.rb, line 5
def run
  return help if arguments.empty?
  self.class.fetch_view(arguments.shift).new(arguments,flags).run
end