class GenomerPluginView::Gff

Constants

DEFAULT

Public Instance Methods

run() click to toggle source
# File lib/genomer-plugin-view/gff.rb, line 7
def run
  options = GenomerPluginView.convert_command_line_flags(flags)
  annotations(options).
    map{|i| i.seqname = options[:identifier] || DEFAULT; i}.
    map(&:to_s).
    map(&:strip).
    unshift("##gff-version 3").
    join("\n") + "\n"
end