Table of Contents - ms-error_rate-0.0.13 Documentation
Pages
Classes and Modules
- Array
- Enumerable
- Ms
- Ms::ErrorRate
- Ms::ErrorRate::Decoy
- Ms::ErrorRate::Qvalue
- Ms::ErrorRate::Qvalue::Mascot
- Ms::ErrorRate::Qvalue::Mascot::Percolator
- Ms::ErrorRate::Sbv
- Ms::ErrorRate::Sbv::PeptideBased
- Ms::ErrorRate::Sbv::ProteinBased
- Ms::Ident
- Object
- Phobius
- Phobius::Index
- Phobius::Parser
- Phobius::ParserShort
- Reverser
- TopPred
- TopPred::Index
- TopPred::Parser
- TopPred::Parser_Text
- TopPred::Parser_XML
- TopPred::Parser_XML::AXML
- TopPred::Parser_XML::DOM
- TopPred::Parser_XML::LibXML
- TransmembraneIndex
Methods
- ::default_index — Phobius
- ::default_index — TopPred
- ::expand_peptides — Ms::Ident
- ::filetype — TransmembraneIndex
- ::filetype — TopPred::Parser
- ::generate_hashes — Ms::ErrorRate::Sbv
- ::generate_hashes — Ms::ErrorRate::Sbv::PeptideBased
- ::generate_hashes — Ms::ErrorRate::Sbv::ProteinBased
- ::new — Ms::ErrorRate::Sbv
- ::new — Reverser
- ::new — Phobius::Index
- ::new — TopPred::Index
- ::new — TransmembraneIndex
- ::new — Phobius::Parser
- ::new — TopPred::Parser
- ::new — TopPred::Parser_XML
- ::peptide_centric_db — Ms::Ident
- ::precision — Ms::ErrorRate::Decoy
- #<=> — Reverser
- #add_sequences_to_segments — TopPred::Parser
- #avg_overlap — TransmembraneIndex
- #calculate_background_frequency — Ms::ErrorRate::Sbv
- #file_to_index — Phobius::Parser
- #file_to_index — TopPred::Parser
- #get_root_node_from_io — TopPred::Parser_XML::LibXML
- #get_root_node_from_io — TopPred::Parser_XML::AXML
- #group_by — Array
- #mixed_target_decoy — Ms::ErrorRate::Qvalue
- #num_certain_index — TransmembraneIndex
- #num_certain_putative — TopPred::Parser_Text
- #num_overlapping_chars — TransmembraneIndex
- #num_transmem_aa — TransmembraneIndex
- #parse — TopPred::Parser_XML
- #prediction_to_array — Phobius::ParserShort
- #qvalues — Ms::ErrorRate::Qvalue::Mascot
- #qvalues — Ms::ErrorRate::Qvalue::Mascot::Percolator
- #read_aaseq — TopPred::Parser_Text
- #read_segment_summary — TopPred::Parser_Text
- #read_segments — TopPred::Parser_Text
- #read_structure — TopPred::Parser_Text
- #read_structures — TopPred::Parser_Text
- #reference_to_key — Phobius::Index
- #reference_to_key — TopPred::Index
- #reference_to_key — TransmembraneIndex
- #rev — Object
- #segment_arrays_to_hashes — TopPred::Parser_Text
- #sort_by_attributes — Enumerable
- #tab_txt — Ms::ErrorRate::Qvalue::Mascot::Percolator
- #target_decoy_qvalues — Ms::ErrorRate::Qvalue
- #to_index — Phobius::ParserShort
- #to_index — TopPred::Parser_XML::DOM
- #to_index — TopPred::Parser_Text
- #top_structure — TopPred::Parser_Text
- #update_precision — Ms::ErrorRate::Sbv