Mock Version: 3.0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/rubygem-mspire.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1652539315.603326/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.j12g1n75:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.j12g1n75:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'f2df9ff7d93d46d4ac4ce7753216ed8b', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1652539315.603326/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.j12g1n75:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/rubygem-mspire.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1650326400 Wrote: /builddir/build/SRPMS/rubygem-mspire-0.10.8.0-1.fc37.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/rubygem-mspire.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1652539315.603326/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.j12g1n75:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.j12g1n75:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'f48e0b6d176b4acb9581674a4efd2774', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1652539315.603326/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.j12g1n75:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/rubygem-mspire.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1650326400 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.u2XuWN + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf mspire-0.10.8.0 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/mspire-0.10.8.0.gem Unpacked gem: '/builddir/build/BUILD/mspire-0.10.8.0' + STATUS=0 + '[' 0 -ne 0 ']' + cd mspire-0.10.8.0 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.zFfieq + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/mspire-0.10.8.0/.package_note-rubygem-mspire-0.10.8.0-1.fc37.x86_64.ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + '[' -f /usr/lib/rpm/generate-rpm-note.sh ']' + /usr/lib/rpm/generate-rpm-note.sh rubygem-mspire 0.10.8.0-1.fc37 x86_64 + cd mspire-0.10.8.0 + gem build ../mspire-0.10.8.0.gemspec WARNING: open-ended dependency on bsearch (>= 1.5.0) is not recommended if bsearch is semantically versioned, use: add_runtime_dependency 'bsearch', '~> 1.5', '>= 1.5.0' WARNING: open-ended dependency on andand (>= 1.3.3) is not recommended if andand is semantically versioned, use: add_runtime_dependency 'andand', '~> 1.3', '>= 1.3.3' WARNING: open-ended dependency on obo (>= 0.1.4) is not recommended if obo is semantically versioned, use: add_runtime_dependency 'obo', '~> 0.1', '>= 0.1.4' WARNING: open-ended dependency on rake (>= 0, development) is not recommended use a bounded requirement, such as '~> x.y' WARNING: open-ended dependency on coveralls (>= 0, development) is not recommended use a bounded requirement, such as '~> x.y' WARNING: See https://guides.rubygems.org/specification-reference/ for help Successfully built RubyGem Name: mspire Version: 0.10.8.0 File: mspire-0.10.8.0.gem + mkdir -p ./usr/share/gems + CONFIGURE_ARGS='--with-cflags='\''-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'\'' --with-cxxflags='\''-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'\'' --with-ldflags='\''-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 '\'' ' + gem install -V --local --build-root . --force --document=ri,rdoc mspire-0.10.8.0.gem WARNING: You build with buildroot. Build root: /builddir/build/BUILD/mspire-0.10.8.0 Bin dir: /builddir/build/BUILD/mspire-0.10.8.0/usr/bin Gem home: /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems Plugins dir: /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/plugins /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/.gitignore /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/.travis.yml /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/Gemfile /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/LICENSE /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/README.md /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/Rakefile /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/bin/mspire /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/lib/core_ext/array/in_groups.rb /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/lib/core_ext/enumerable.rb /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/lib/cv.rb /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/lib/cv/param.rb /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/lib/cv/referenceable_param_group_ref.rb /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/lib/hash/inverse.rb /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/lib/io/bookmark.rb /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/lib/merge.rb /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/lib/mspire.rb /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/lib/mspire/bin.rb /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/lib/mspire/commandline.rb /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/lib/mspire/cv/obo.rb /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/lib/mspire/cv/param.rb /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/lib/mspire/cv/paramable.rb /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/lib/mspire/digester.rb /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/lib/mspire/error_rate/decoy.rb /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/lib/mspire/error_rate/qvalue.rb /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/lib/mspire/fasta.rb /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/lib/mspire/ident.rb /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/lib/mspire/ident/peptide.rb /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/lib/mspire/ident/peptide/db.rb /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/lib/mspire/ident/peptide/db/creator.rb /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/lib/mspire/ident/peptide/db/io.rb /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/lib/mspire/ident/peptide_hit.rb /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/lib/mspire/ident/peptide_hit/qvalue.rb /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/lib/mspire/ident/pepxml.rb /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/lib/mspire/ident/pepxml/modifications.rb /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/lib/mspire/ident/pepxml/msms_pipeline_analysis.rb /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/lib/mspire/ident/pepxml/msms_run_summary.rb /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/lib/mspire/ident/pepxml/parameters.rb /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/lib/mspire/ident/pepxml/sample_enzyme.rb /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/lib/mspire/ident/pepxml/search_database.rb /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/lib/mspire/ident/pepxml/search_hit.rb /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/lib/mspire/ident/pepxml/search_hit/modification_info.rb /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/lib/mspire/ident/pepxml/search_result.rb /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/lib/mspire/ident/pepxml/search_summary.rb /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/lib/mspire/ident/pepxml/spectrum_query.rb /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/lib/mspire/ident/protein.rb /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/lib/mspire/ident/protein_group.rb /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/lib/mspire/ident/search.rb /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/lib/mspire/imzml/writer.rb /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/lib/mspire/imzml/writer/commandline.rb /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/lib/mspire/isotope.rb /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/lib/mspire/isotope/aa.rb /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/lib/mspire/isotope/distribution.rb /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/lib/mspire/isotope/neese.rb 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/builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/spec/testfiles/mspire/quant/max_quant_output.provenance.txt /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/spec/testfiles/mspire/quant/max_quant_output.txt /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/spec/testfiles/mspire/quant/pdcd5_final.killedextratabs.tsv /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/spec/testfiles/mspire/quant/pdcd5_final.killedextratabs.tsv_qspecgp /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/spec/testfiles/mspire/quant/pdcd5_final.killedextratabs.tsv_qspecgp.csv /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/spec/testfiles/mspire/quant/pdcd5_final.txt /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/spec/testfiles/mspire/quant/pdcd5_final.txt_qspecgp /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/spec/testfiles/mspire/quant/pdcd5_lfq_qspec.CSV.csv /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/spec/testfiles/mspire/quant/pdcd5_lfq_qspec.csv /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/spec/testfiles/mspire/quant/pdcd5_lfq_qspec.oneprot.csv /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/spec/testfiles/mspire/quant/pdcd5_lfq_qspec.oneprot.tsv /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/spec/testfiles/mspire/quant/pdcd5_lfq_qspec.oneprot.tsv_qspecgp /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/spec/testfiles/mspire/quant/pdcd5_lfq_qspec.oneprot.tsv_qspecgp.csv /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/spec/testfiles/mspire/quant/pdcd5_lfq_qspec.txt /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/spec/testfiles/mspire/quant/pdcd5_lfq_tabdel.txt /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/spec/testfiles/mspire/quant/pdcd5_lfq_tabdel.txt_qspecgp /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/spec/testfiles/mspire/quant/remove_rest_of_proteins.rb /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/spec/testfiles/mspire/quant/unlog_transform.rb /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/spec/testfiles/plms1/output.key /builddir/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0/spec/testfiles/processed_binary.tmp.ibd /builddir/build/BUILD/mspire-0.10.8.0/usr/bin/mspire Successfully installed mspire-0.10.8.0 Parsing documentation for mspire-0.10.8.0 Parsing sources... 0% [ 1/118] lib/core_ext/array/in_groups.rb 1% [ 2/118] lib/core_ext/enumerable.rb 2% [ 3/118] lib/cv.rb 3% [ 4/118] lib/cv/param.rb 4% [ 5/118] lib/cv/referenceable_param_group_ref.rb 5% [ 6/118] lib/hash/inverse.rb 5% [ 7/118] lib/io/bookmark.rb 6% [ 8/118] lib/merge.rb 7% [ 9/118] lib/mspire.rb 8% [10/118] lib/mspire/bin.rb 9% [11/118] lib/mspire/commandline.rb 10% [12/118] lib/mspire/cv/obo.rb 11% [13/118] lib/mspire/cv/param.rb 11% [14/118] lib/mspire/cv/paramable.rb 12% [15/118] lib/mspire/digester.rb 13% [16/118] lib/mspire/error_rate/decoy.rb 14% [17/118] lib/mspire/error_rate/qvalue.rb 15% [18/118] lib/mspire/fasta.rb 16% [19/118] lib/mspire/ident.rb 16% [20/118] lib/mspire/ident/peptide.rb 17% [21/118] lib/mspire/ident/peptide/db.rb 18% [22/118] lib/mspire/ident/peptide/db/creator.rb 19% [23/118] lib/mspire/ident/peptide/db/io.rb 20% [24/118] lib/mspire/ident/peptide_hit.rb 21% [25/118] lib/mspire/ident/peptide_hit/qvalue.rb 22% [26/118] lib/mspire/ident/pepxml.rb 22% [27/118] lib/mspire/ident/pepxml/modifications.rb 23% [28/118] lib/mspire/ident/pepxml/msms_pipeline_analysis.rb 24% [29/118] lib/mspire/ident/pepxml/msms_run_summary.rb 25% [30/118] lib/mspire/ident/pepxml/parameters.rb 26% [31/118] lib/mspire/ident/pepxml/sample_enzyme.rb 27% [32/118] lib/mspire/ident/pepxml/search_database.rb 27% [33/118] lib/mspire/ident/pepxml/search_hit.rb 28% [34/118] lib/mspire/ident/pepxml/search_hit/modification_info.rb 29% [35/118] lib/mspire/ident/pepxml/search_result.rb 30% [36/118] lib/mspire/ident/pepxml/search_summary.rb 31% [37/118] lib/mspire/ident/pepxml/spectrum_query.rb 32% [38/118] lib/mspire/ident/protein.rb 33% [39/118] lib/mspire/ident/protein_group.rb 33% [40/118] lib/mspire/ident/search.rb 34% [41/118] lib/mspire/imzml/writer.rb 35% [42/118] lib/mspire/imzml/writer/commandline.rb 36% [43/118] lib/mspire/isotope.rb 37% [44/118] lib/mspire/isotope/aa.rb 38% [45/118] lib/mspire/isotope/distribution.rb 38% [46/118] lib/mspire/isotope/neese.rb 39% [47/118] lib/mspire/isotope/nist.rb 40% [48/118] lib/mspire/isotope/nist/updater.rb 41% [49/118] lib/mspire/mascot.rb 42% [50/118] lib/mspire/mass.rb 43% [51/118] lib/mspire/mass/aa.rb 44% [52/118] lib/mspire/mass/all.rb 44% [53/118] lib/mspire/mass/common.rb 45% [54/118] lib/mspire/mass/element.rb 46% [55/118] lib/mspire/mass/subatomic.rb 47% [56/118] lib/mspire/mass/util.rb 48% [57/118] lib/mspire/molecular_formula.rb 49% [58/118] lib/mspire/mzid/modification.rb 50% [59/118] lib/mspire/mzid/search_modification.rb 50% [60/118] lib/mspire/mzml.rb 51% [61/118] lib/mspire/mzml/activation.rb 52% [62/118] lib/mspire/mzml/chromatogram.rb 53% [63/118] lib/mspire/mzml/chromatogram_list.rb 54% [64/118] lib/mspire/mzml/component.rb 55% [65/118] lib/mspire/mzml/contact.rb 55% [66/118] lib/mspire/mzml/cv.rb 56% [67/118] lib/mspire/mzml/data_array.rb 57% [68/118] lib/mspire/mzml/data_array_container_like.rb 58% [69/118] lib/mspire/mzml/data_processing.rb 59% [70/118] lib/mspire/mzml/file_content.rb 60% [71/118] lib/mspire/mzml/file_description.rb 61% [72/118] lib/mspire/mzml/index.rb 61% [73/118] lib/mspire/mzml/index_list.rb 62% [74/118] lib/mspire/mzml/instrument_configuration.rb 63% [75/118] lib/mspire/mzml/io_index.rb 64% [76/118] lib/mspire/mzml/io_indexable_list.rb 65% [77/118] lib/mspire/mzml/isolation_window.rb 66% [78/118] lib/mspire/mzml/list.rb 66% [79/118] lib/mspire/mzml/parser.rb 67% [80/118] lib/mspire/mzml/plms1.rb 68% [81/118] lib/mspire/mzml/precursor.rb 69% [82/118] lib/mspire/mzml/processing_method.rb 70% [83/118] lib/mspire/mzml/product.rb 71% [84/118] lib/mspire/mzml/reader.rb 72% [85/118] lib/mspire/mzml/referenceable_param_group.rb 72% [86/118] lib/mspire/mzml/run.rb 73% [87/118] lib/mspire/mzml/sample.rb 74% [88/118] lib/mspire/mzml/scan.rb 75% [89/118] lib/mspire/mzml/scan_list.rb 76% [90/118] lib/mspire/mzml/scan_settings.rb 77% [91/118] lib/mspire/mzml/scan_window.rb 77% [92/118] lib/mspire/mzml/selected_ion.rb 78% [93/118] lib/mspire/mzml/software.rb 79% [94/118] lib/mspire/mzml/source_file.rb 80% [95/118] lib/mspire/mzml/spectrum.rb 81% [96/118] lib/mspire/mzml/spectrum_list.rb 82% [97/118] lib/mspire/obo.rb 83% [98/118] lib/mspire/paramable.rb 83% [99/118] lib/mspire/peak.rb 84% [100/118] lib/mspire/peaklist.rb 85% [101/118] lib/mspire/plms1.rb 86% [102/118] lib/mspire/quant/cmdline.rb 87% [103/118] lib/mspire/quant/protein_group_comparison.rb 88% [104/118] lib/mspire/quant/qspec.rb 88% [105/118] lib/mspire/quant/qspec/protein_group_comparison.rb 89% [106/118] lib/mspire/quant/spectral_counts.rb 90% [107/118] lib/mspire/spectrum.rb 91% [108/118] lib/mspire/spectrum/centroid.rb 92% [109/118] lib/mspire/spectrum_like.rb 93% [110/118] lib/mspire/tagged_peak.rb 94% [111/118] lib/mspire/user_param.rb 94% [112/118] lib/mspire/version.rb 95% [113/118] lib/obo/ims.rb 96% [114/118] lib/obo/ms.rb 97% [115/118] lib/obo/ontology.rb 98% [116/118] lib/obo/unit.rb 99% [117/118] lib/openany.rb 100% [118/118] lib/write_file_or_string.rb Installing ri documentation for mspire-0.10.8.0 Installing darkfish documentation for mspire-0.10.8.0 Done installing documentation for mspire after 1 seconds 1 gem installed + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.mkNTbH + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/rubygem-mspire-0.10.8.0-1.fc37.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/rubygem-mspire-0.10.8.0-1.fc37.x86_64 ++ dirname /builddir/build/BUILDROOT/rubygem-mspire-0.10.8.0-1.fc37.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/rubygem-mspire-0.10.8.0-1.fc37.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/mspire-0.10.8.0/.package_note-rubygem-mspire-0.10.8.0-1.fc37.x86_64.ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd mspire-0.10.8.0 + mkdir -p /builddir/build/BUILDROOT/rubygem-mspire-0.10.8.0-1.fc37.x86_64/usr/share/gems + cp -a ./usr/share/gems/build_info ./usr/share/gems/cache ./usr/share/gems/doc ./usr/share/gems/extensions ./usr/share/gems/gems ./usr/share/gems/plugins ./usr/share/gems/specifications /builddir/build/BUILDROOT/rubygem-mspire-0.10.8.0-1.fc37.x86_64/usr/share/gems/ + mkdir -p /builddir/build/BUILDROOT/rubygem-mspire-0.10.8.0-1.fc37.x86_64/usr/bin + cp -a ./usr/bin/mspire /builddir/build/BUILDROOT/rubygem-mspire-0.10.8.0-1.fc37.x86_64/usr/bin/ + find /builddir/build/BUILDROOT/rubygem-mspire-0.10.8.0-1.fc37.x86_64/usr/share/gems/gems/mspire-0.10.8.0/bin -type f + xargs chmod a+x + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 0.10.8.0-1.fc37 --unique-debug-suffix -0.10.8.0-1.fc37.x86_64 --unique-debug-src-base rubygem-mspire-0.10.8.0-1.fc37.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/mspire-0.10.8.0 + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs mangling shebang in /usr/share/gems/gems/mspire-0.10.8.0/spec/testfiles/mspire/quant/kill_extra_tabs.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/mspire-0.10.8.0/script/quant_compare_direct_injections.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/mspire-0.10.8.0/script/peptide_hit_qvalues_to_spectral_counts_table.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/mspire-0.10.8.0/script/mzml_to_mgf.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/mspire-0.10.8.0/script/mzml_read_binary.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/mspire-0.10.8.0/script/mass_correct.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/mspire-0.10.8.0/script/mascot_dat_to_peptide_hit_qvalues.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/mspire-0.10.8.0/script/fasta_to_peptide_centric_db.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/mspire-0.10.8.0/script/download_uniprotkb_db.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/share/gems/gems/mspire-0.10.8.0/bin/mspire from /usr/bin/env ruby to #!/usr/bin/ruby + /usr/lib/rpm/brp-remove-la-files + /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.3CPPlB + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/mspire-0.10.8.0/.package_note-rubygem-mspire-0.10.8.0-1.fc37.x86_64.ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + '[' -f /usr/lib/rpm/generate-rpm-note.sh ']' + /usr/lib/rpm/generate-rpm-note.sh rubygem-mspire 0.10.8.0-1.fc37 x86_64 + cd mspire-0.10.8.0 + pushd ./usr/share/gems/gems/mspire-0.10.8.0 ~/build/BUILD/mspire-0.10.8.0/usr/share/gems/gems/mspire-0.10.8.0 ~/build/BUILD/mspire-0.10.8.0 ~/build/BUILD/mspire-0.10.8.0 + popd + RPM_EC=0 ++ jobs -p + exit 0 Processing files: rubygem-mspire-0.10.8.0-1.fc37.noarch Provides: rubygem(mspire) = 0.10.8.0 rubygem-mspire = 0.10.8.0-1.fc37 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: (rubygem(bio) >= 1.4.3.0001 with rubygem(bio) < 1.4.4) (rubygem(builder) >= 3.2.2 with rubygem(builder) < 3.3) (rubygem(nokogiri) >= 1.6.1 with rubygem(nokogiri) < 1.7) (rubygem(trollop) >= 2.0.0 with rubygem(trollop) < 2.1) /usr/bin/ruby ruby(rubygems) rubygem(andand) >= 1.3.3 rubygem(bsearch) >= 1.5.0 rubygem(obo) >= 0.1.4 Processing files: rubygem-mspire-doc-0.10.8.0-1.fc37.noarch Provides: rubygem-mspire-doc = 0.10.8.0-1.fc37 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/ruby Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/rubygem-mspire-0.10.8.0-1.fc37.x86_64 Wrote: /builddir/build/RPMS/rubygem-mspire-0.10.8.0-1.fc37.noarch.rpm Wrote: /builddir/build/RPMS/rubygem-mspire-doc-0.10.8.0-1.fc37.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.QWUoVR + umask 022 + cd /builddir/build/BUILD + cd mspire-0.10.8.0 + /usr/bin/rm -rf /builddir/build/BUILDROOT/rubygem-mspire-0.10.8.0-1.fc37.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Child return code was: 0