Table of Contents - mzid-0.0.1 Documentation
Classes and Modules
- MzID
- MzID::BaseParser
- MzID::BatchParser
- MzID::FilteredStreamingParser
- MzID::PSM
- MzID::Parser
- MzID::ParserSax
- MzID::ParserSax::CounterHandler
- MzID::ParserSax::DBSequenceHandler
- MzID::ParserSax::PeptideEventHandler
- MzID::ParserSax::PeptideHandler
- MzID::ParserSax::SpectraIDHandler
- MzID::PeptideEvidence
- MzID::StreamingParser
- MzID::StreamingParserLines
Methods
- ::new — MzID::BaseParser
- ::new — MzID::BatchParser
- ::new — MzID::BatchParser
- ::new — MzID::FilteredStreamingParser
- ::new — MzID::ParserSax
- ::new — MzID::ParserSax::CounterHandler
- ::new — MzID::ParserSax::DBSequenceHandler
- ::new — MzID::ParserSax::PeptideHandler
- ::new — MzID::ParserSax::PeptideEventHandler
- ::new — MzID::ParserSax::SpectraIDHandler
- ::new — MzID::PeptideEvidence
- ::new — MzID::PSM
- ::new — MzID::StreamingParser
- ::new — MzID::StreamingParserLines
- #add_pep_ev — MzID::PSM
- #attr — MzID::ParserSax::DBSequenceHandler
- #attr — MzID::ParserSax::PeptideHandler
- #attr — MzID::ParserSax::PeptideEventHandler
- #attr — MzID::ParserSax::SpectraIDHandler
- #attrs_done — MzID::ParserSax::SpectraIDHandler
- #cache_db_seq_entries — MzID::BatchParser
- #cache_db_seq_entries — MzID::BatchParser
- #cache_db_seq_entries — MzID::FilteredStreamingParser
- #cache_ids — MzID::BatchParser
- #cache_ids — MzID::BatchParser
- #cache_ids — MzID::FilteredStreamingParser
- #cache_ids — MzID::StreamingParser
- #cache_ids — MzID::StreamingParserLines
- #cache_ids2 — MzID::FilteredStreamingParser
- #cache_pep_ev — MzID::BatchParser
- #cache_pep_ev — MzID::BatchParser
- #cache_pep_ev — MzID::FilteredStreamingParser
- #cache_pep_ev — MzID::StreamingParser
- #each_psm — MzID::BatchParser
- #each_psm — MzID::BatchParser
- #each_psm — MzID::FilteredStreamingParser
- #each_psm — MzID::StreamingParser
- #each_psm — MzID::StreamingParserLines
- #each_spectrum — MzID::BatchParser
- #each_spectrum — MzID::BatchParser
- #end_element — MzID::ParserSax::DBSequenceHandler
- #end_element — MzID::ParserSax::PeptideHandler
- #end_element — MzID::ParserSax::PeptideEventHandler
- #end_element — MzID::ParserSax::SpectraIDHandler
- #get_db_seq_ref — MzID::PeptideEvidence
- #get_end_pos — MzID::PeptideEvidence
- #get_id — MzID::PeptideEvidence
- #get_id — MzID::PSM
- #get_is_decoy — MzID::PeptideEvidence
- #get_is_decoy — MzID::StreamingParserLines
- #get_modifications — MzID::BaseParser
- #get_mods — MzID::PSM
- #get_num_elements — MzID::StreamingParser
- #get_pass_threshold — MzID::PSM
- #get_pep — MzID::PSM
- #get_pep_end — MzID::StreamingParserLines
- #get_pep_ev — MzID::PSM
- #get_pep_id — MzID::PeptideEvidence
- #get_pep_ref — MzID::PSM
- #get_pep_start — MzID::StreamingParserLines
- #get_peptide_sequence — MzID::BaseParser
- #get_post — MzID::PeptideEvidence
- #get_pre — MzID::PeptideEvidence
- #get_prot_id — MzID::FilteredStreamingParser
- #get_prot_id — MzID::PeptideEvidence
- #get_prot_id — MzID::StreamingParserLines
- #get_psm — MzID::FilteredStreamingParser
- #get_psm — MzID::StreamingParser
- #get_spec_num — MzID::PSM
- #get_spec_prob — MzID::PSM
- #get_spec_ref — MzID::PSM
- #get_start_pos — MzID::PeptideEvidence
- #set_pep — MzID::PSM
- #set_spec_prob — MzID::PSM
- #start_element — MzID::ParserSax::CounterHandler
- #start_element — MzID::ParserSax::DBSequenceHandler
- #start_element — MzID::ParserSax::PeptideHandler
- #start_element — MzID::ParserSax::PeptideEventHandler
- #start_element — MzID::ParserSax::SpectraIDHandler
- #text — MzID::ParserSax::PeptideHandler
- #to_s — MzID::PeptideEvidence
- #to_s — MzID::PSM
- #value — MzID::ParserSax::DBSequenceHandler
- #write_to_csv — MzID::ParserSax
- #write_to_csv — MzID::StreamingParserLines
- #write_to_file — MzID::FilteredStreamingParser