class SequenceServer::BLAST::Job
Extends SequenceServer::Job
to describe a BLAST
job.
Public Class Methods
new(params)
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Calls superclass method
# File lib/sequenceserver/blast/job.rb, line 10 def initialize(params) if params.key?(:xml) super do @imported_xml_file = File.basename params[:xml] # Copy over the XML file to job directory so that a job dir in # itself is self-contained. This will help with tests among # other things. FileUtils.cp(params[:xml], dir) @databases = [] done! end else validate params super do @method = params[:method] @query = params[:sequence] @qfile = store('query.fa', params[:sequence]) @databases = Database[params[:databases]] @advanced = params[:advanced].to_s.strip @options = @advanced + defaults # The following params are for analytics only @num_threads = config[:num_threads] @query_length = calculate_query_size @number_of_query_sequences = calculate_number_of_sequences @databases_ncharacters_total = calculate_databases_ncharacters_total end end end