module SequenceServer::BLAST

Define constanst used by BLAST module.

Define BLAST::Hit.

Define BLAST::HSP and BLAST::HSP::*.

BLAST module.

Define BLAST::Query.

Constants

ALGORITHMS
ERROR_LINE
HSP

Structure to hold data for each HSP.

Hit

Hit object to store all the hits per Query.

OUTFMT
OUTFMT_SPECIFIERS
Query

Capture results per query of a BLAST search. @member [String] number @member [String] def @member [Fixnum] length @member [Array(Hit)] hits

STDREP
VALID_SEQUENCE_ID