Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c195' (ED25519) to the list of known hosts.

You can reproduce this build on your computer by running:

  sudo dnf install copr-rpmbuild
  /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/7372128-fedora-40-x86_64 --chroot fedora-40-x86_64


Version: 0.72
PID: 6235
Logging PID: 6236
Task:
{'allow_user_ssh': False,
 'appstream': False,
 'background': True,
 'build_id': 7372128,
 'buildroot_pkgs': [],
 'chroot': 'fedora-40-x86_64',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': '85c1e271a6db6737f25e9900e48558b1c671a9f2',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/@copr/PyPI/python-pyhmmer',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'python-pyhmmer',
 'package_version': '0.10.12-1',
 'project_dirname': 'PyPI',
 'project_name': 'PyPI',
 'project_owner': '@copr',
 'repo_priority': None,
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/@copr/PyPI/fedora-40-x86_64/',
            'id': 'copr_base',
            'name': 'Copr repository',
            'priority': None}],
 'sandbox': '@copr/PyPI--ksurma',
 'source_json': {},
 'source_type': None,
 'ssh_public_keys': None,
 'submitter': 'ksurma',
 'tags': [],
 'task_id': '7372128-fedora-40-x86_64',
 'timeout': 18000,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/@copr/PyPI/python-pyhmmer /var/lib/copr-rpmbuild/workspace/workdir-yb5vdkh1/python-pyhmmer --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/@copr/PyPI/python-pyhmmer', '/var/lib/copr-rpmbuild/workspace/workdir-yb5vdkh1/python-pyhmmer', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-yb5vdkh1/python-pyhmmer'...

Running: git checkout 85c1e271a6db6737f25e9900e48558b1c671a9f2 --

cmd: ['git', 'checkout', '85c1e271a6db6737f25e9900e48558b1c671a9f2', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-yb5vdkh1/python-pyhmmer
rc: 0
stdout: 
stderr: Note: switching to '85c1e271a6db6737f25e9900e48558b1c671a9f2'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at 85c1e27 automatic import of python-pyhmmer

Running: copr-distgit-client sources
/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated

cmd: ['copr-distgit-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-yb5vdkh1/python-pyhmmer
rc: 0
stdout: 
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading pyhmmer-0.10.12.tar.gz
INFO: Reading stdout from command: curl --help all
INFO: Calling: curl -H Pragma: -o pyhmmer-0.10.12.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/@copr/PyPI/python-pyhmmer/pyhmmer-0.10.12.tar.gz/md5/3422337e20aa1749b1774ceb65e1fe80/pyhmmer-0.10.12.tar.gz
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 5001k  100 5001k    0     0  13.7M      0 --:--:-- --:--:-- --:--:-- 13.7M
INFO: Reading stdout from command: md5sum pyhmmer-0.10.12.tar.gz

Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-yb5vdkh1/python-pyhmmer/python-pyhmmer.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-yb5vdkh1/python-pyhmmer --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1714078417.276338 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 5.5 starting (python version = 3.12.1, NVR = mock-5.5-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-yb5vdkh1/python-pyhmmer/python-pyhmmer.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-yb5vdkh1/python-pyhmmer --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1714078417.276338 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-yb5vdkh1/python-pyhmmer/python-pyhmmer.spec)  Config(fedora-40-x86_64)
Start: clean chroot
Finish: clean chroot
Mock Version: 5.5
INFO: Mock Version: 5.5
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-40-x86_64-bootstrap-1714078417.276338/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Guessed host environment type: unknown
INFO: Using bootstrap image: registry.fedoraproject.org/fedora:40
INFO: Pulling image: registry.fedoraproject.org/fedora:40
INFO: Copy content of container registry.fedoraproject.org/fedora:40 to /var/lib/mock/fedora-40-x86_64-bootstrap-1714078417.276338/root
INFO: Checking that registry.fedoraproject.org/fedora:40 image matches host's architecture
INFO: mounting registry.fedoraproject.org/fedora:40 with podman image mount
INFO: image registry.fedoraproject.org/fedora:40 as /var/lib/containers/storage/overlay/77920da379140c986c6e1746edfc48e7acea754976fcd596ef5e64c96b3b1bed/merged
INFO: umounting image registry.fedoraproject.org/fedora:40 (/var/lib/containers/storage/overlay/77920da379140c986c6e1746edfc48e7acea754976fcd596ef5e64c96b3b1bed/merged) with podman image umount
INFO: Using 'dnf' instead of 'dnf5' for bootstrap chroot
INFO: Package manager dnf detected and used (fallback)
INFO: Bootstrap image not marked ready
Start(bootstrap): installing dnf5 tooling
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                  68 MB/s |  42 MB     00:00    
fedora                                          618 kB/s |  20 MB     00:32    
updates                                         4.3 MB/s | 2.4 MB     00:00    
Dependencies resolved.
================================================================================
 Package             Architecture  Version                 Repository      Size
================================================================================
Installing:
 dnf5                x86_64        5.1.17-1.fc40           updates        701 k
 dnf5-plugins        x86_64        5.1.17-1.fc40           updates        358 k
Installing dependencies:
 fmt                 x86_64        10.2.1-4.fc40           fedora         125 k
 libdnf5             x86_64        5.1.17-1.fc40           updates        1.0 M
 libdnf5-cli         x86_64        5.1.17-1.fc40           updates        231 k
 sdbus-cpp           x86_64        1.4.0-2.fc40            fedora         110 k
 systemd-libs        x86_64        255.4-1.fc40            fedora         708 k

Transaction Summary
================================================================================
Install  7 Packages

Total download size: 3.2 M
Installed size: 8.8 M
Downloading Packages:
(1/7): sdbus-cpp-1.4.0-2.fc40.x86_64.rpm        633 kB/s | 110 kB     00:00    
(2/7): systemd-libs-255.4-1.fc40.x86_64.rpm     2.1 MB/s | 708 kB     00:00    
(3/7): fmt-10.2.1-4.fc40.x86_64.rpm             314 kB/s | 125 kB     00:00    
(4/7): dnf5-5.1.17-1.fc40.x86_64.rpm            1.8 MB/s | 701 kB     00:00    
(5/7): dnf5-plugins-5.1.17-1.fc40.x86_64.rpm    1.5 MB/s | 358 kB     00:00    
(6/7): libdnf5-cli-5.1.17-1.fc40.x86_64.rpm     7.2 MB/s | 231 kB     00:00    
(7/7): libdnf5-5.1.17-1.fc40.x86_64.rpm         3.9 MB/s | 1.0 MB     00:00    
--------------------------------------------------------------------------------
Total                                           3.1 MB/s | 3.2 MB     00:01     
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Preparing        :                                                        1/1 
  Installing       : fmt-10.2.1-4.fc40.x86_64                               1/7 
  Installing       : libdnf5-5.1.17-1.fc40.x86_64                           2/7 
  Installing       : libdnf5-cli-5.1.17-1.fc40.x86_64                       3/7 
  Installing       : systemd-libs-255.4-1.fc40.x86_64                       4/7 
  Installing       : sdbus-cpp-1.4.0-2.fc40.x86_64                          5/7 
  Installing       : dnf5-5.1.17-1.fc40.x86_64                              6/7 
  Installing       : dnf5-plugins-5.1.17-1.fc40.x86_64                      7/7 
  Running scriptlet: dnf5-plugins-5.1.17-1.fc40.x86_64                      7/7 

Installed:
  dnf5-5.1.17-1.fc40.x86_64              dnf5-plugins-5.1.17-1.fc40.x86_64      
  fmt-10.2.1-4.fc40.x86_64               libdnf5-5.1.17-1.fc40.x86_64           
  libdnf5-cli-5.1.17-1.fc40.x86_64       sdbus-cpp-1.4.0-2.fc40.x86_64          
  systemd-libs-255.4-1.fc40.x86_64      

Complete!
INFO: Switching package manager from dnf to the dnf5 (direct choice)
Finish(bootstrap): installing dnf5 tooling
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-40-x86_64-1714078417.276338/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf5 detected and used (direct choice)
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.19.1.1-1.fc40.x86_64
  rpm-sequoia-1.6.0-2.fc40.x86_64
  python3-dnf-4.19.2-1.fc40.noarch
  yum-4.19.2-1.fc40.noarch
  dnf5-5.1.17-1.fc40.x86_64
  dnf5-plugins-5.1.17-1.fc40.x86_64
Start: installing minimal buildroot with dnf5
Updating and loading repositories:
 updates                                100% |   7.9 MiB/s |   2.7 MiB |  00m00s
 fedora                                 100% |  12.1 MiB/s |  20.8 MiB |  00m02s
 Copr repository                        100% |  74.7 MiB/s |  41.5 MiB |  00m01s
Repositories loaded.
Package                           Arch   Version                    Repository      Size
Installing group/module packages:                                                       
 bash                             x86_64 5.2.26-3.fc40              fedora       8.1 MiB
 bzip2                            x86_64 1.0.8-18.fc40              fedora      91.7 KiB
 coreutils                        x86_64 9.4-6.fc40                 fedora       5.8 MiB
 cpio                             x86_64 2.15-1.fc40                fedora       1.1 MiB
 diffutils                        x86_64 3.10-5.fc40                fedora       1.6 MiB
 fedora-release-common            noarch 40-39                      updates     19.1 KiB
 findutils                        x86_64 1:4.9.0-8.fc40             fedora       1.5 MiB
 gawk                             x86_64 5.3.0-3.fc40               fedora       1.7 MiB
 glibc-minimal-langpack           x86_64 2.39-8.fc40                updates      0.0   B
 grep                             x86_64 3.11-7.fc40                fedora       1.0 MiB
 gzip                             x86_64 1.13-1.fc40                fedora     385.0 KiB
 info                             x86_64 7.1-2.fc40                 fedora     357.8 KiB
 patch                            x86_64 2.7.6-24.fc40              fedora     262.8 KiB
 redhat-rpm-config                noarch 286-1.fc40                 fedora     185.2 KiB
 rpm-build                        x86_64 4.19.1.1-1.fc40            fedora     173.7 KiB
 sed                              x86_64 4.9-1.fc40                 fedora     861.5 KiB
 shadow-utils                     x86_64 2:4.15.1-2.fc40            updates      4.1 MiB
 tar                              x86_64 2:1.35-3.fc40              fedora       2.9 MiB
 unzip                            x86_64 6.0-63.fc40                fedora     382.8 KiB
 util-linux                       x86_64 2.40-13.fc40               updates      3.7 MiB
 which                            x86_64 2.21-41.fc40               fedora      80.2 KiB
 xz                               x86_64 1:5.4.6-3.fc40             fedora       2.0 MiB
Installing dependencies:                                                                
 alternatives                     x86_64 1.26-3.fc40                fedora      62.3 KiB
 ansible-srpm-macros              noarch 1-14.fc40                  fedora      35.7 KiB
 audit-libs                       x86_64 4.0.1-1.fc40               fedora     327.3 KiB
 authselect                       x86_64 1.5.0-5.fc40               fedora     153.6 KiB
 authselect-libs                  x86_64 1.5.0-5.fc40               fedora     818.3 KiB
 basesystem                       noarch 11-20.fc40                 fedora       0.0   B
 binutils                         x86_64 2.41-34.fc40               fedora      26.4 MiB
 binutils-gold                    x86_64 2.41-34.fc40               fedora       2.0 MiB
 bzip2-libs                       x86_64 1.0.8-18.fc40              fedora      80.7 KiB
 ca-certificates                  noarch 2023.2.62_v7.0.401-6.fc40  fedora       2.3 MiB
 coreutils-common                 x86_64 9.4-6.fc40                 fedora      11.4 MiB
 cracklib                         x86_64 2.9.11-5.fc40              fedora     238.9 KiB
 crypto-policies                  noarch 20240201-2.git9f501f3.fc40 fedora     149.3 KiB
 curl                             x86_64 8.6.0-8.fc40               updates    734.6 KiB
 cyrus-sasl-lib                   x86_64 2.1.28-19.fc40             fedora       2.3 MiB
 debugedit                        x86_64 5.0-14.fc40                fedora     199.0 KiB
 dwz                              x86_64 0.15-6.fc40                fedora     290.9 KiB
 ed                               x86_64 1.20.1-1.fc40              fedora     146.5 KiB
 efi-srpm-macros                  noarch 5-11.fc40                  fedora      40.1 KiB
 elfutils                         x86_64 0.191-4.fc40               fedora       2.5 MiB
 elfutils-debuginfod-client       x86_64 0.191-4.fc40               fedora      64.9 KiB
 elfutils-default-yama-scope      noarch 0.191-4.fc40               fedora       1.8 KiB
 elfutils-libelf                  x86_64 0.191-4.fc40               fedora       1.2 MiB
 elfutils-libs                    x86_64 0.191-4.fc40               fedora     646.1 KiB
 fedora-gpg-keys                  noarch 40-1                       fedora     125.0 KiB
 fedora-release                   noarch 40-39                      updates      0.0   B
 fedora-release-identity-basic    noarch 40-39                      updates    654.0   B
 fedora-repos                     noarch 40-1                       fedora       4.9 KiB
 file                             x86_64 5.45-4.fc40                fedora     103.5 KiB
 file-libs                        x86_64 5.45-4.fc40                fedora       9.9 MiB
 filesystem                       x86_64 3.18-8.fc40                fedora     106.0   B
 fonts-srpm-macros                noarch 1:2.0.5-14.fc40            fedora      55.3 KiB
 forge-srpm-macros                noarch 0.2.0-3.fc40               fedora      37.4 KiB
 fpc-srpm-macros                  noarch 1.3-12.fc40                fedora     144.0   B
 gdb-minimal                      x86_64 14.2-1.fc40                fedora      12.7 MiB
 gdbm                             x86_64 1:1.23-6.fc40              fedora     460.9 KiB
 gdbm-libs                        x86_64 1:1.23-6.fc40              fedora     121.9 KiB
 ghc-srpm-macros                  noarch 1.9-1.fc40                 fedora     716.0   B
 glibc                            x86_64 2.39-8.fc40                updates      6.7 MiB
 glibc-common                     x86_64 2.39-8.fc40                updates      1.0 MiB
 glibc-gconv-extra                x86_64 2.39-8.fc40                updates      7.8 MiB
 gmp                              x86_64 1:6.2.1-8.fc40             fedora     794.6 KiB
 gnat-srpm-macros                 noarch 6-5.fc40                   fedora       1.0 KiB
 go-srpm-macros                   noarch 3.5.0-1.fc40               fedora      60.6 KiB
 jansson                          x86_64 2.13.1-9.fc40              fedora      88.3 KiB
 kernel-srpm-macros               noarch 1.0-23.fc40                fedora       1.9 KiB
 keyutils-libs                    x86_64 1.6.3-3.fc40               fedora      54.4 KiB
 krb5-libs                        x86_64 1.21.2-5.fc40              fedora       2.3 MiB
 libacl                           x86_64 2.3.2-1.fc40               fedora      40.0 KiB
 libarchive                       x86_64 3.7.2-3.fc40               fedora     914.6 KiB
 libattr                          x86_64 2.5.2-3.fc40               fedora      28.5 KiB
 libblkid                         x86_64 2.40-13.fc40               updates    262.5 KiB
 libbrotli                        x86_64 1.1.0-3.fc40               fedora     829.5 KiB
 libcap                           x86_64 2.69-8.fc40                updates    219.8 KiB
 libcap-ng                        x86_64 0.8.4-4.fc40               fedora      73.1 KiB
 libcom_err                       x86_64 1.47.0-5.fc40              fedora      67.2 KiB
 libcurl                          x86_64 8.6.0-8.fc40               updates    772.8 KiB
 libeconf                         x86_64 0.6.2-1.fc40               fedora      58.0 KiB
 libevent                         x86_64 2.1.12-12.fc40             fedora     895.6 KiB
 libfdisk                         x86_64 2.40-13.fc40               updates    362.9 KiB
 libffi                           x86_64 3.4.4-7.fc40               fedora      81.6 KiB
 libgcc                           x86_64 14.0.1-0.15.fc40           fedora     270.6 KiB
 libgomp                          x86_64 14.0.1-0.15.fc40           fedora     519.4 KiB
 libidn2                          x86_64 2.3.7-1.fc40               fedora     329.1 KiB
 libmount                         x86_64 2.40-13.fc40               updates    351.8 KiB
 libnghttp2                       x86_64 1.59.0-3.fc40              updates    166.1 KiB
 libnsl2                          x86_64 2.0.1-1.fc40               fedora      57.9 KiB
 libpkgconf                       x86_64 2.1.0-1.fc40               fedora      74.2 KiB
 libpsl                           x86_64 0.21.5-3.fc40              fedora      80.5 KiB
 libpwquality                     x86_64 1.4.5-9.fc40               fedora     417.8 KiB
 libselinux                       x86_64 3.6-4.fc40                 fedora     173.0 KiB
 libsemanage                      x86_64 3.6-3.fc40                 fedora     293.5 KiB
 libsepol                         x86_64 3.6-3.fc40                 fedora     802.0 KiB
 libsmartcols                     x86_64 2.40-13.fc40               updates    180.4 KiB
 libssh                           x86_64 0.10.6-5.fc40              fedora     509.3 KiB
 libssh-config                    noarch 0.10.6-5.fc40              fedora     277.0   B
 libstdc++                        x86_64 14.0.1-0.15.fc40           fedora       2.8 MiB
 libtasn1                         x86_64 4.19.0-6.fc40              fedora     175.7 KiB
 libtirpc                         x86_64 1.3.4-1.rc3.fc40           fedora     202.8 KiB
 libtool-ltdl                     x86_64 2.4.7-10.fc40              fedora      66.2 KiB
 libunistring                     x86_64 1.1-7.fc40                 fedora       1.7 MiB
 libutempter                      x86_64 1.2.1-13.fc40              fedora      57.7 KiB
 libuuid                          x86_64 2.40-13.fc40               updates     37.4 KiB
 libverto                         x86_64 0.3.2-8.fc40               fedora      29.5 KiB
 libxcrypt                        x86_64 4.4.36-5.fc40              fedora     262.8 KiB
 libxml2                          x86_64 2.12.6-1.fc40              updates      1.7 MiB
 libzstd                          x86_64 1.5.6-1.fc40               updates    787.9 KiB
 lua-libs                         x86_64 5.4.6-5.fc40               fedora     281.1 KiB
 lua-srpm-macros                  noarch 1-13.fc40                  fedora       1.3 KiB
 lz4-libs                         x86_64 1.9.4-6.fc40               fedora     129.4 KiB
 mpfr                             x86_64 4.2.1-3.fc40               fedora     832.0 KiB
 ncurses-base                     noarch 6.4-12.20240127.fc40       fedora     326.2 KiB
 ncurses-libs                     x86_64 6.4-12.20240127.fc40       fedora     963.2 KiB
 ocaml-srpm-macros                noarch 9-3.fc40                   fedora       1.9 KiB
 openblas-srpm-macros             noarch 2-16.fc40                  fedora     104.0   B
 openldap                         x86_64 2.6.7-1.fc40               fedora     635.1 KiB
 openssl-libs                     x86_64 1:3.2.1-2.fc40             fedora       7.8 MiB
 p11-kit                          x86_64 0.25.3-4.fc40              fedora       2.2 MiB
 p11-kit-trust                    x86_64 0.25.3-4.fc40              fedora     391.4 KiB
 package-notes-srpm-macros        noarch 0.5-11.fc40                fedora       1.6 KiB
 pam                              x86_64 1.6.0-2.fc40               fedora       1.8 MiB
 pam-libs                         x86_64 1.6.0-2.fc40               fedora     135.0 KiB
 pcre2                            x86_64 10.42-2.fc40.2             fedora     637.6 KiB
 pcre2-syntax                     noarch 10.42-2.fc40.2             fedora     235.1 KiB
 perl-srpm-macros                 noarch 1-53.fc40                  fedora     861.0   B
 pkgconf                          x86_64 2.1.0-1.fc40               fedora      82.4 KiB
 pkgconf-m4                       noarch 2.1.0-1.fc40               fedora      13.9 KiB
 pkgconf-pkg-config               x86_64 2.1.0-1.fc40               fedora     989.0   B
 popt                             x86_64 1.19-6.fc40                fedora     136.9 KiB
 publicsuffix-list-dafsa          noarch 20240107-3.fc40            fedora      67.5 KiB
 pyproject-srpm-macros            noarch 1.12.0-1.fc40              fedora       1.5 KiB
 python-srpm-macros               noarch 3.12-7.fc40                fedora      50.1 KiB
 qt5-srpm-macros                  noarch 5.15.13-1.fc40             fedora     492.0   B
 qt6-srpm-macros                  noarch 6.6.2-1.fc40               fedora     456.0   B
 readline                         x86_64 8.2-8.fc40                 fedora     489.2 KiB
 rpm                              x86_64 4.19.1.1-1.fc40            fedora       3.0 MiB
 rpm-build-libs                   x86_64 4.19.1.1-1.fc40            fedora     198.4 KiB
 rpm-libs                         x86_64 4.19.1.1-1.fc40            fedora     709.9 KiB
 rpm-sequoia                      x86_64 1.6.0-2.fc40               fedora       2.2 MiB
 rust-srpm-macros                 noarch 26.2-1.fc40                fedora       4.8 KiB
 setup                            noarch 2.14.5-2.fc40              fedora     720.4 KiB
 sqlite-libs                      x86_64 3.45.1-2.fc40              fedora       1.4 MiB
 systemd-libs                     x86_64 255.4-1.fc40               fedora       1.9 MiB
 util-linux-core                  x86_64 2.40-13.fc40               updates      1.5 MiB
 xxhash-libs                      x86_64 0.8.2-2.fc40               fedora      88.5 KiB
 xz-libs                          x86_64 1:5.4.6-3.fc40             fedora     209.8 KiB
 zig-srpm-macros                  noarch 1-2.fc40                   fedora       1.1 KiB
 zip                              x86_64 3.0-40.fc40                fedora     703.2 KiB
 zlib-ng-compat                   x86_64 2.1.6-2.fc40               fedora     134.0 KiB
 zstd                             x86_64 1.5.6-1.fc40               updates      1.7 MiB
Installing groups:                                                                      
 Buildsystem building group                                                             

Transaction Summary:
 Installing:      152 packages

Total size of inbound packages is 53 MiB. Need to download 53 MiB.
After this operation 178 MiB will be used (install 178 MiB, remove 0 B).
[  1/152] bzip2-0:1.0.8-18.fc40.x86_64  100% |  58.9 KiB/s |  52.4 KiB |  00m01s
[  2/152] cpio-0:2.15-1.fc40.x86_64     100% | 446.8 KiB/s | 292.2 KiB |  00m01s
[  3/152] diffutils-0:3.10-5.fc40.x86_6 100% | 721.6 KiB/s | 405.6 KiB |  00m01s
[  4/152] findutils-1:4.9.0-8.fc40.x86_ 100% |   1.2 MiB/s | 492.0 KiB |  00m00s
[  5/152] grep-0:3.11-7.fc40.x86_64     100% |   1.3 MiB/s | 300.2 KiB |  00m00s
[  6/152] bash-0:5.2.26-3.fc40.x86_64   100% | 581.2 KiB/s |   1.8 MiB |  00m03s
[  7/152] info-0:7.1-2.fc40.x86_64      100% | 599.8 KiB/s | 182.3 KiB |  00m00s
[  8/152] gzip-0:1.13-1.fc40.x86_64     100% | 198.4 KiB/s | 170.6 KiB |  00m01s
[  9/152] redhat-rpm-config-0:286-1.fc4 100% | 747.8 KiB/s |  83.0 KiB |  00m00s
[ 10/152] rpm-build-0:4.19.1.1-1.fc40.x 100% | 452.1 KiB/s |  78.2 KiB |  00m00s
[ 11/152] coreutils-0:9.4-6.fc40.x86_64 100% | 291.6 KiB/s |   1.1 MiB |  00m04s
[ 12/152] patch-0:2.7.6-24.fc40.x86_64  100% | 235.1 KiB/s | 130.7 KiB |  00m01s
[ 13/152] sed-0:4.9-1.fc40.x86_64       100% | 964.3 KiB/s | 318.2 KiB |  00m00s
[ 14/152] unzip-0:6.0-63.fc40.x86_64    100% | 659.0 KiB/s | 184.5 KiB |  00m00s
[ 15/152] which-0:2.21-41.fc40.x86_64   100% | 235.5 KiB/s |  41.4 KiB |  00m00s
[ 16/152] fedora-release-common-0:40-39 100% |  65.3 KiB/s |  21.3 KiB |  00m00s
[ 17/152] xz-1:5.4.6-3.fc40.x86_64      100% |   1.3 MiB/s | 557.4 KiB |  00m00s
[ 18/152] glibc-minimal-langpack-0:2.39 100% |   1.1 MiB/s | 101.2 KiB |  00m00s
[ 19/152] tar-2:1.35-3.fc40.x86_64      100% | 865.3 KiB/s | 856.6 KiB |  00m01s
[ 20/152] shadow-utils-2:4.15.1-2.fc40. 100% |   6.2 MiB/s |   1.3 MiB |  00m00s
[ 21/152] gawk-0:5.3.0-3.fc40.x86_64    100% |   1.4 MiB/s |   1.1 MiB |  00m01s
[ 22/152] util-linux-0:2.40-13.fc40.x86 100% |   2.4 MiB/s |   1.2 MiB |  00m00s
[ 23/152] bzip2-libs-0:1.0.8-18.fc40.x8 100% | 389.1 KiB/s |  40.9 KiB |  00m00s
[ 24/152] ncurses-libs-0:6.4-12.2024012 100% |   1.5 MiB/s | 332.5 KiB |  00m00s
[ 25/152] filesystem-0:3.18-8.fc40.x86_ 100% |   1.5 MiB/s |   1.1 MiB |  00m01s
[ 26/152] gmp-1:6.2.1-8.fc40.x86_64     100% |   1.2 MiB/s | 312.5 KiB |  00m00s
[ 27/152] libacl-0:2.3.2-1.fc40.x86_64  100% | 142.0 KiB/s |  24.4 KiB |  00m00s
[ 28/152] libattr-0:2.5.2-3.fc40.x86_64 100% | 106.5 KiB/s |  18.0 KiB |  00m00s
[ 29/152] libselinux-0:3.6-4.fc40.x86_6 100% | 435.4 KiB/s |  87.5 KiB |  00m00s
[ 30/152] pcre2-0:10.42-2.fc40.2.x86_64 100% | 906.8 KiB/s | 235.8 KiB |  00m00s
[ 31/152] ed-0:1.20.1-1.fc40.x86_64     100% | 710.7 KiB/s |  81.7 KiB |  00m00s
[ 32/152] ansible-srpm-macros-0:1-14.fc 100% | 121.1 KiB/s |  20.8 KiB |  00m00s
[ 33/152] dwz-0:0.15-6.fc40.x86_64      100% | 931.2 KiB/s | 137.8 KiB |  00m00s
[ 34/152] openssl-libs-1:3.2.1-2.fc40.x 100% |   2.9 MiB/s |   2.3 MiB |  00m01s
[ 35/152] efi-srpm-macros-0:5-11.fc40.n 100% | 256.3 KiB/s |  22.3 KiB |  00m00s
[ 36/152] fonts-srpm-macros-1:2.0.5-14. 100% | 157.9 KiB/s |  26.5 KiB |  00m00s
[ 37/152] file-0:5.45-4.fc40.x86_64     100% | 207.5 KiB/s |  49.0 KiB |  00m00s
[ 38/152] forge-srpm-macros-0:0.2.0-3.f 100% | 202.8 KiB/s |  18.7 KiB |  00m00s
[ 39/152] fpc-srpm-macros-0:1.3-12.fc40 100% | 107.3 KiB/s |   7.8 KiB |  00m00s
[ 40/152] coreutils-common-0:9.4-6.fc40 100% |   1.3 MiB/s |   2.2 MiB |  00m02s
[ 41/152] ghc-srpm-macros-0:1.9-1.fc40. 100% | 113.6 KiB/s |   8.7 KiB |  00m00s
[ 42/152] gnat-srpm-macros-0:6-5.fc40.n 100% | 119.2 KiB/s |   8.8 KiB |  00m00s
[ 43/152] go-srpm-macros-0:3.5.0-1.fc40 100% | 331.9 KiB/s |  27.5 KiB |  00m00s
[ 44/152] kernel-srpm-macros-0:1.0-23.f 100% | 124.7 KiB/s |   9.7 KiB |  00m00s
[ 45/152] lua-srpm-macros-0:1-13.fc40.n 100% | 119.6 KiB/s |   8.7 KiB |  00m00s
[ 46/152] ocaml-srpm-macros-0:9-3.fc40. 100% | 119.4 KiB/s |   9.1 KiB |  00m00s
[ 47/152] openblas-srpm-macros-0:2-16.f 100% |  98.7 KiB/s |   7.5 KiB |  00m00s
[ 48/152] package-notes-srpm-macros-0:0 100% | 136.2 KiB/s |   9.9 KiB |  00m00s
[ 49/152] perl-srpm-macros-0:1-53.fc40. 100% | 111.8 KiB/s |   8.4 KiB |  00m00s
[ 50/152] pyproject-srpm-macros-0:1.12. 100% | 168.3 KiB/s |  13.6 KiB |  00m00s
[ 51/152] python-srpm-macros-0:3.12-7.f 100% | 309.3 KiB/s |  23.8 KiB |  00m00s
[ 52/152] qt5-srpm-macros-0:5.15.13-1.f 100% | 113.2 KiB/s |   8.5 KiB |  00m00s
[ 53/152] qt6-srpm-macros-0:6.6.2-1.fc4 100% | 115.4 KiB/s |   8.9 KiB |  00m00s
[ 54/152] rust-srpm-macros-0:26.2-1.fc4 100% | 163.1 KiB/s |  12.6 KiB |  00m00s
[ 55/152] zig-srpm-macros-0:1-2.fc40.no 100% | 105.8 KiB/s |   8.0 KiB |  00m00s
[ 56/152] rpm-0:4.19.1.1-1.fc40.x86_64  100% |   2.7 MiB/s | 540.1 KiB |  00m00s
[ 57/152] debugedit-0:5.0-14.fc40.x86_6 100% | 666.9 KiB/s |  78.7 KiB |  00m00s
[ 58/152] zip-0:3.0-40.fc40.x86_64      100% |   1.4 MiB/s | 264.8 KiB |  00m00s
[ 59/152] elfutils-0:0.191-4.fc40.x86_6 100% |   2.9 MiB/s | 531.3 KiB |  00m00s
[ 60/152] popt-0:1.19-6.fc40.x86_64     100% | 660.3 KiB/s |  66.7 KiB |  00m00s
[ 61/152] elfutils-libelf-0:0.191-4.fc4 100% |   1.1 MiB/s | 209.8 KiB |  00m00s
[ 62/152] readline-0:8.2-8.fc40.x86_64  100% |   1.8 MiB/s | 213.3 KiB |  00m00s
[ 63/152] rpm-build-libs-0:4.19.1.1-1.f 100% | 848.3 KiB/s |  95.0 KiB |  00m00s
[ 64/152] fedora-repos-0:40-1.noarch    100% | 125.7 KiB/s |   9.4 KiB |  00m00s
[ 65/152] xz-libs-1:5.4.6-3.fc40.x86_64 100% |   1.2 MiB/s | 110.0 KiB |  00m00s
[ 66/152] rpm-libs-0:4.19.1.1-1.fc40.x8 100% |   1.4 MiB/s | 308.9 KiB |  00m00s
[ 67/152] mpfr-0:4.2.1-3.fc40.x86_64    100% |   1.6 MiB/s | 349.0 KiB |  00m00s
[ 68/152] audit-libs-0:4.0.1-1.fc40.x86 100% | 986.6 KiB/s | 125.3 KiB |  00m00s
[ 69/152] libeconf-0:0.6.2-1.fc40.x86_6 100% | 414.4 KiB/s |  31.9 KiB |  00m00s
[ 70/152] libsemanage-0:3.6-3.fc40.x86_ 100% | 938.8 KiB/s | 116.4 KiB |  00m00s
[ 71/152] libxcrypt-0:4.4.36-5.fc40.x86 100% |   1.2 MiB/s | 118.1 KiB |  00m00s
[ 72/152] pam-libs-0:1.6.0-2.fc40.x86_6 100% | 583.0 KiB/s |  57.1 KiB |  00m00s
[ 73/152] glibc-common-0:2.39-8.fc40.x8 100% | 873.3 KiB/s | 386.0 KiB |  00m00s
[ 74/152] setup-0:2.14.5-2.fc40.noarch  100% |   1.5 MiB/s | 154.7 KiB |  00m00s
[ 75/152] libcap-ng-0:0.8.4-4.fc40.x86_ 100% | 375.2 KiB/s |  32.6 KiB |  00m00s
[ 76/152] libutempter-0:1.2.1-13.fc40.x 100% | 347.4 KiB/s |  26.4 KiB |  00m00s
[ 77/152] zlib-ng-compat-0:2.1.6-2.fc40 100% | 828.6 KiB/s |  77.1 KiB |  00m00s
[ 78/152] ncurses-base-0:6.4-12.2024012 100% | 998.0 KiB/s |  88.8 KiB |  00m00s
[ 79/152] systemd-libs-0:255.4-1.fc40.x 100% |   2.1 MiB/s | 707.7 KiB |  00m00s
[ 80/152] libsepol-0:3.6-3.fc40.x86_64  100% |   2.4 MiB/s | 340.1 KiB |  00m00s
[ 81/152] util-linux-core-0:2.40-13.fc4 100% |   1.2 MiB/s | 537.5 KiB |  00m00s
[ 82/152] crypto-policies-0:20240201-2. 100% |   1.1 MiB/s |  99.8 KiB |  00m00s
[ 83/152] pcre2-syntax-0:10.42-2.fc40.2 100% |   1.1 MiB/s | 142.7 KiB |  00m00s
[ 84/152] ca-certificates-0:2023.2.62_v 100% |   2.9 MiB/s | 862.1 KiB |  00m00s
[ 85/152] file-libs-0:5.45-4.fc40.x86_6 100% |   3.6 MiB/s | 762.7 KiB |  00m00s
[ 86/152] libarchive-0:3.7.2-3.fc40.x86 100% |   1.9 MiB/s | 407.1 KiB |  00m00s
[ 87/152] elfutils-debuginfod-client-0: 100% | 486.9 KiB/s |  38.5 KiB |  00m00s
[ 88/152] elfutils-libs-0:0.191-4.fc40. 100% |   1.9 MiB/s | 259.9 KiB |  00m00s
[ 89/152] libgcc-0:14.0.1-0.15.fc40.x86 100% |   1.1 MiB/s | 125.8 KiB |  00m00s
[ 90/152] lua-libs-0:5.4.6-5.fc40.x86_6 100% |   1.1 MiB/s | 131.9 KiB |  00m00s
[ 91/152] libgomp-0:14.0.1-0.15.fc40.x8 100% |   2.2 MiB/s | 346.3 KiB |  00m00s
[ 92/152] libstdc++-0:14.0.1-0.15.fc40. 100% |   4.2 MiB/s | 883.7 KiB |  00m00s
[ 93/152] fedora-gpg-keys-0:40-1.noarch 100% |   1.4 MiB/s | 132.0 KiB |  00m00s
[ 94/152] lz4-libs-0:1.9.4-6.fc40.x86_6 100% | 840.3 KiB/s |  67.2 KiB |  00m00s
[ 95/152] sqlite-libs-0:3.45.1-2.fc40.x 100% |   3.2 MiB/s | 705.1 KiB |  00m00s
[ 96/152] elfutils-default-yama-scope-0 100% | 185.4 KiB/s |  13.5 KiB |  00m00s
[ 97/152] rpm-sequoia-0:1.6.0-2.fc40.x8 100% |   2.9 MiB/s | 847.5 KiB |  00m00s
[ 98/152] glibc-0:2.39-8.fc40.x86_64    100% |  16.7 MiB/s |   2.2 MiB |  00m00s
[ 99/152] basesystem-0:11-20.fc40.noarc 100% |  97.1 KiB/s |   7.2 KiB |  00m00s
[100/152] glibc-gconv-extra-0:2.39-8.fc 100% |  17.3 MiB/s |   1.7 MiB |  00m00s
[101/152] libcap-0:2.69-8.fc40.x86_64   100% |   2.7 MiB/s |  85.7 KiB |  00m00s
[102/152] zstd-0:1.5.6-1.fc40.x86_64    100% |  13.4 MiB/s | 479.4 KiB |  00m00s
[103/152] alternatives-0:1.26-3.fc40.x8 100% | 524.5 KiB/s |  39.9 KiB |  00m00s
[104/152] binutils-gold-0:2.41-34.fc40. 100% |   4.2 MiB/s | 781.6 KiB |  00m00s
[105/152] jansson-0:2.13.1-9.fc40.x86_6 100% | 573.7 KiB/s |  44.2 KiB |  00m00s
[106/152] libzstd-0:1.5.6-1.fc40.x86_64 100% | 717.4 KiB/s | 309.2 KiB |  00m00s
[107/152] pkgconf-pkg-config-0:2.1.0-1. 100% | 134.8 KiB/s |   9.7 KiB |  00m00s
[108/152] pkgconf-0:2.1.0-1.fc40.x86_64 100% | 537.0 KiB/s |  43.5 KiB |  00m00s
[109/152] pkgconf-m4-0:2.1.0-1.fc40.noa 100% | 190.7 KiB/s |  13.9 KiB |  00m00s
[110/152] curl-0:8.6.0-8.fc40.x86_64    100% |   8.6 MiB/s | 300.7 KiB |  00m00s
[111/152] libpkgconf-0:2.1.0-1.fc40.x86 100% | 472.9 KiB/s |  37.8 KiB |  00m00s
[112/152] libxml2-0:2.12.6-1.fc40.x86_6 100% |  17.2 MiB/s | 686.2 KiB |  00m00s
[113/152] libffi-0:3.4.4-7.fc40.x86_64  100% | 486.0 KiB/s |  39.4 KiB |  00m00s
[114/152] p11-kit-0:0.25.3-4.fc40.x86_6 100% |   3.5 MiB/s | 489.8 KiB |  00m00s
[115/152] libtasn1-0:4.19.0-6.fc40.x86_ 100% | 837.4 KiB/s |  73.7 KiB |  00m00s
[116/152] libblkid-0:2.40-13.fc40.x86_6 100% |   3.8 MiB/s | 124.6 KiB |  00m00s
[117/152] p11-kit-trust-0:0.25.3-4.fc40 100% |   1.4 MiB/s | 131.5 KiB |  00m00s
[118/152] libuuid-0:2.40-13.fc40.x86_64 100% | 951.9 KiB/s |  28.6 KiB |  00m00s
[119/152] libmount-0:2.40-13.fc40.x86_6 100% |   4.9 MiB/s | 155.1 KiB |  00m00s
[120/152] libsmartcols-0:2.40-13.fc40.x 100% |   2.5 MiB/s |  83.3 KiB |  00m00s
[121/152] libfdisk-0:2.40-13.fc40.x86_6 100% |   5.0 MiB/s | 159.7 KiB |  00m00s
[122/152] binutils-0:2.41-34.fc40.x86_6 100% |   6.8 MiB/s |   6.2 MiB |  00m01s
[123/152] authselect-libs-0:1.5.0-5.fc4 100% |   2.1 MiB/s | 218.6 KiB |  00m00s
[124/152] authselect-0:1.5.0-5.fc40.x86 100% |   1.6 MiB/s | 146.2 KiB |  00m00s
[125/152] gdbm-libs-1:1.23-6.fc40.x86_6 100% | 720.1 KiB/s |  56.2 KiB |  00m00s
[126/152] pam-0:1.6.0-2.fc40.x86_64     100% |   2.9 MiB/s | 552.8 KiB |  00m00s
[127/152] libnsl2-0:2.0.1-1.fc40.x86_64 100% | 379.1 KiB/s |  29.6 KiB |  00m00s
[128/152] libpwquality-0:1.4.5-9.fc40.x 100% |   1.3 MiB/s | 119.7 KiB |  00m00s
[129/152] libtirpc-0:1.3.4-1.rc3.fc40.x 100% |   1.0 MiB/s |  92.5 KiB |  00m00s
[130/152] cracklib-0:2.9.11-5.fc40.x86_ 100% |   1.1 MiB/s |  92.5 KiB |  00m00s
[131/152] libcom_err-0:1.47.0-5.fc40.x8 100% | 329.3 KiB/s |  25.4 KiB |  00m00s
[132/152] keyutils-libs-0:1.6.3-3.fc40. 100% | 414.1 KiB/s |  31.5 KiB |  00m00s
[133/152] krb5-libs-0:1.21.2-5.fc40.x86 100% |   4.4 MiB/s | 756.1 KiB |  00m00s
[134/152] libverto-0:0.3.2-8.fc40.x86_6 100% | 273.9 KiB/s |  20.5 KiB |  00m00s
[135/152] fedora-release-0:40-39.noarch 100% | 360.2 KiB/s |  10.8 KiB |  00m00s
[136/152] gdbm-1:1.23-6.fc40.x86_64     100% |   1.7 MiB/s | 152.5 KiB |  00m00s
[137/152] xxhash-libs-0:0.8.2-2.fc40.x8 100% | 473.6 KiB/s |  36.9 KiB |  00m00s
[138/152] libbrotli-0:1.1.0-3.fc40.x86_ 100% |   3.1 MiB/s | 338.4 KiB |  00m00s
[139/152] libcurl-0:8.6.0-8.fc40.x86_64 100% |   1.6 MiB/s | 344.9 KiB |  00m00s
[140/152] libidn2-0:2.3.7-1.fc40.x86_64 100% |   1.4 MiB/s | 118.7 KiB |  00m00s
[141/152] libpsl-0:0.21.5-3.fc40.x86_64 100% | 751.7 KiB/s |  63.9 KiB |  00m00s
[142/152] libssh-0:0.10.6-5.fc40.x86_64 100% |   2.2 MiB/s | 210.6 KiB |  00m00s
[143/152] gdb-minimal-0:14.2-1.fc40.x86 100% |   9.2 MiB/s |   4.3 MiB |  00m00s
[144/152] openldap-0:2.6.7-1.fc40.x86_6 100% |   2.0 MiB/s | 254.3 KiB |  00m00s
[145/152] libunistring-0:1.1-7.fc40.x86 100% |   4.1 MiB/s | 545.5 KiB |  00m00s
[146/152] libssh-config-0:0.10.6-5.fc40 100% | 120.4 KiB/s |   9.0 KiB |  00m00s
[147/152] publicsuffix-list-dafsa-0:202 100% | 754.4 KiB/s |  58.1 KiB |  00m00s
[148/152] libtool-ltdl-0:2.4.7-10.fc40. 100% | 469.6 KiB/s |  36.2 KiB |  00m00s
[149/152] libnghttp2-0:1.59.0-3.fc40.x8 100% |   2.3 MiB/s |  75.3 KiB |  00m00s
[150/152] cyrus-sasl-lib-0:2.1.28-19.fc 100% |   5.0 MiB/s | 789.3 KiB |  00m00s
[151/152] libevent-0:2.1.12-12.fc40.x86 100% |   1.9 MiB/s | 257.2 KiB |  00m00s
[152/152] fedora-release-identity-basic 100% | 186.9 KiB/s |  11.6 KiB |  00m00s
--------------------------------------------------------------------------------
[152/152] Total                         100% |   4.0 MiB/s |  52.8 MiB |  00m13s
Running transaction
Importing PGP key 0xA15B79CC:
 Userid     : "Fedora (40) <fedora-40-primary@fedoraproject.org>"
 Fingerprint: 115DF9AEF857853EE8445D0A0727707EA15B79CC
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-40-primary
The key was successfully imported.
[  1/154] Verify package files          100% | 565.0   B/s | 152.0   B |  00m00s
>>> Running pre-transaction scriptlet: filesystem-0:3.18-8.fc40.x86_64
>>> Stop pre-transaction scriptlet: filesystem-0:3.18-8.fc40.x86_64
[  2/154] Prepare transaction           100% |   1.8 KiB/s | 152.0   B |  00m00s
[  3/154] Installing libgcc-0:14.0.1-0. 100% | 133.0 MiB/s | 272.3 KiB |  00m00s
>>> Running post-install scriptlet: libgcc-0:14.0.1-0.15.fc40.x86_64
>>> Stop post-install scriptlet: libgcc-0:14.0.1-0.15.fc40.x86_64
[  4/154] Installing crypto-policies-0: 100% |  16.1 MiB/s | 181.7 KiB |  00m00s
>>> Running post-install scriptlet: crypto-policies-0:20240201-2.git9f501f3.fc40
>>> Stop post-install scriptlet: crypto-policies-0:20240201-2.git9f501f3.fc40.no
[  5/154] Installing fedora-release-ide 100% | 890.6 KiB/s | 912.0   B |  00m00s
[  6/154] Installing fedora-gpg-keys-0: 100% |  20.8 MiB/s | 170.1 KiB |  00m00s
[  7/154] Installing fedora-repos-0:40- 100% |   5.6 MiB/s |   5.7 KiB |  00m00s
[  8/154] Installing fedora-release-com 100% |  11.4 MiB/s |  23.3 KiB |  00m00s
[  9/154] Installing fedora-release-0:4 100% |   0.0   B/s | 124.0   B |  00m00s
[ 10/154] Installing setup-0:2.14.5-2.f 100% |  47.3 MiB/s | 725.8 KiB |  00m00s
>>> Running post-install scriptlet: setup-0:2.14.5-2.fc40.noarch
>>> Stop post-install scriptlet: setup-0:2.14.5-2.fc40.noarch
[ 11/154] Installing filesystem-0:3.18- 100% |   1.6 MiB/s | 212.4 KiB |  00m00s
[ 12/154] Installing basesystem-0:11-20 100% |   0.0   B/s | 124.0   B |  00m00s
[ 13/154] Installing libssh-config-0:0. 100% |   0.0   B/s | 816.0   B |  00m00s
[ 14/154] Installing publicsuffix-list- 100% |  66.7 MiB/s |  68.3 KiB |  00m00s
[ 15/154] Installing pkgconf-m4-0:2.1.0 100% |   0.0   B/s |  14.3 KiB |  00m00s
[ 16/154] Installing pcre2-syntax-0:10. 100% | 116.0 MiB/s | 237.6 KiB |  00m00s
[ 17/154] Installing ncurses-base-0:6.4 100% |  38.2 MiB/s | 351.6 KiB |  00m00s
[ 18/154] Installing glibc-minimal-lang 100% |   0.0   B/s | 124.0   B |  00m00s
[ 19/154] Installing ncurses-libs-0:6.4 100% | 135.3 MiB/s | 969.7 KiB |  00m00s
>>> Running pre-install scriptlet: glibc-0:2.39-8.fc40.x86_64
>>> Stop pre-install scriptlet: glibc-0:2.39-8.fc40.x86_64
[ 20/154] Installing glibc-0:2.39-8.fc4 100% | 110.7 MiB/s |   6.8 MiB |  00m00s
>>> Running post-install scriptlet: glibc-0:2.39-8.fc40.x86_64
>>> Stop post-install scriptlet: glibc-0:2.39-8.fc40.x86_64
[ 21/154] Installing bash-0:5.2.26-3.fc 100% | 199.1 MiB/s |   8.2 MiB |  00m00s
>>> Running post-install scriptlet: bash-0:5.2.26-3.fc40.x86_64
>>> Stop post-install scriptlet: bash-0:5.2.26-3.fc40.x86_64
[ 22/154] Installing glibc-common-0:2.3 100% | 127.6 MiB/s |   1.0 MiB |  00m00s
[ 23/154] Installing glibc-gconv-extra- 100% |  94.7 MiB/s |   7.9 MiB |  00m00s
>>> Running post-install scriptlet: glibc-gconv-extra-0:2.39-8.fc40.x86_64
>>> Stop post-install scriptlet: glibc-gconv-extra-0:2.39-8.fc40.x86_64
[ 24/154] Installing zlib-ng-compat-0:2 100% | 131.7 MiB/s | 134.8 KiB |  00m00s
[ 25/154] Installing xz-libs-1:5.4.6-3. 100% | 103.0 MiB/s | 210.9 KiB |  00m00s
[ 26/154] Installing bzip2-libs-0:1.0.8 100% |  79.9 MiB/s |  81.8 KiB |  00m00s
[ 27/154] Installing popt-0:1.19-6.fc40 100% |  35.0 MiB/s | 143.5 KiB |  00m00s
[ 28/154] Installing readline-0:8.2-8.f 100% |   8.0 MiB/s | 491.4 KiB |  00m00s
[ 29/154] Installing libstdc++-0:14.0.1 100% | 230.2 MiB/s |   2.8 MiB |  00m00s
[ 30/154] Installing libzstd-0:1.5.6-1. 100% | 256.9 MiB/s | 789.2 KiB |  00m00s
[ 31/154] Installing elfutils-libelf-0: 100% | 292.3 MiB/s |   1.2 MiB |  00m00s
[ 32/154] Installing libuuid-0:2.40-13. 100% |  37.6 MiB/s |  38.5 KiB |  00m00s
[ 33/154] Installing libblkid-0:2.40-13 100% | 128.7 MiB/s | 263.7 KiB |  00m00s
[ 34/154] Installing gmp-1:6.2.1-8.fc40 100% | 194.5 MiB/s | 796.8 KiB |  00m00s
[ 35/154] Installing libattr-0:2.5.2-3. 100% |  28.8 MiB/s |  29.5 KiB |  00m00s
[ 36/154] Installing libacl-0:2.3.2-1.f 100% |  39.9 MiB/s |  40.8 KiB |  00m00s
[ 37/154] Installing libxcrypt-0:4.4.36 100% | 129.7 MiB/s | 265.5 KiB |  00m00s
[ 38/154] Installing libeconf-0:0.6.2-1 100% |  58.2 MiB/s |  59.6 KiB |  00m00s
[ 39/154] Installing lz4-libs-0:1.9.4-6 100% | 127.4 MiB/s | 130.5 KiB |  00m00s
[ 40/154] Installing gdbm-libs-1:1.23-6 100% |  60.3 MiB/s | 123.6 KiB |  00m00s
[ 41/154] Installing mpfr-0:4.2.1-3.fc4 100% | 203.5 MiB/s | 833.5 KiB |  00m00s
[ 42/154] Installing gawk-0:5.3.0-3.fc4 100% | 172.8 MiB/s |   1.7 MiB |  00m00s
[ 43/154] Installing dwz-0:0.15-6.fc40. 100% | 142.7 MiB/s | 292.3 KiB |  00m00s
[ 44/154] Installing unzip-0:6.0-63.fc4 100% | 125.8 MiB/s | 386.3 KiB |  00m00s
[ 45/154] Installing file-libs-0:5.45-4 100% | 254.6 MiB/s |   9.9 MiB |  00m00s
[ 46/154] Installing file-0:5.45-4.fc40 100% | 102.6 MiB/s | 105.0 KiB |  00m00s
[ 47/154] Installing pcre2-0:10.42-2.fc 100% |  48.0 MiB/s | 639.1 KiB |  00m00s
[ 48/154] Installing grep-0:3.11-7.fc40 100% | 111.5 MiB/s |   1.0 MiB |  00m00s
[ 49/154] Installing xz-1:5.4.6-3.fc40. 100% |  77.0 MiB/s |   2.0 MiB |  00m00s
[ 50/154] Installing libcap-ng-0:0.8.4- 100% |  73.2 MiB/s |  75.0 KiB |  00m00s
[ 51/154] Installing audit-libs-0:4.0.1 100% | 160.9 MiB/s | 329.4 KiB |  00m00s
[ 52/154] Installing pam-libs-0:1.6.0-2 100% |  67.1 MiB/s | 137.4 KiB |  00m00s
[ 53/154] Installing libcap-0:2.69-8.fc 100% |   3.9 MiB/s | 224.8 KiB |  00m00s
[ 54/154] Installing systemd-libs-0:255 100% | 113.5 MiB/s |   1.9 MiB |  00m00s
[ 55/154] Installing libsepol-0:3.6-3.f 100% | 261.4 MiB/s | 803.0 KiB |  00m00s
[ 56/154] Installing libselinux-0:3.6-4 100% |  85.1 MiB/s | 174.3 KiB |  00m00s
[ 57/154] Installing sed-0:4.9-1.fc40.x 100% | 121.3 MiB/s | 869.7 KiB |  00m00s
[ 58/154] Installing findutils-1:4.9.0- 100% | 162.9 MiB/s |   1.5 MiB |  00m00s
[ 59/154] Installing libmount-0:2.40-13 100% | 172.3 MiB/s | 352.9 KiB |  00m00s
[ 60/154] Installing lua-libs-0:5.4.6-5 100% | 137.8 MiB/s | 282.3 KiB |  00m00s
[ 61/154] Installing alternatives-0:1.2 100% |  62.5 MiB/s |  64.0 KiB |  00m00s
[ 62/154] Installing jansson-0:2.13.1-9 100% |  87.6 MiB/s |  89.7 KiB |  00m00s
[ 63/154] Installing libtasn1-0:4.19.0- 100% |  57.8 MiB/s | 177.5 KiB |  00m00s
[ 64/154] Installing libsmartcols-0:2.4 100% | 177.1 MiB/s | 181.4 KiB |  00m00s
[ 65/154] Installing libcom_err-0:1.47. 100% |  66.7 MiB/s |  68.3 KiB |  00m00s
[ 66/154] Installing libunistring-0:1.1 100% | 216.3 MiB/s |   1.7 MiB |  00m00s
[ 67/154] Installing libidn2-0:2.3.7-1. 100% |  81.8 MiB/s | 335.0 KiB |  00m00s
[ 68/154] Installing libpsl-0:0.21.5-3. 100% |  79.7 MiB/s |  81.6 KiB |  00m00s
[ 69/154] Installing util-linux-core-0: 100% | 114.2 MiB/s |   1.5 MiB |  00m00s
[ 70/154] Installing tar-2:1.35-3.fc40. 100% | 173.6 MiB/s |   3.0 MiB |  00m00s
[ 71/154] Installing libsemanage-0:3.6- 100% |  96.1 MiB/s | 295.3 KiB |  00m00s
[ 72/154] Installing shadow-utils-2:4.1 100% |  31.4 MiB/s |   4.2 MiB |  00m00s
>>> Running pre-install scriptlet: libutempter-0:1.2.1-13.fc40.x86_64
>>> Stop pre-install scriptlet: libutempter-0:1.2.1-13.fc40.x86_64
[ 73/154] Installing libutempter-0:1.2. 100% |  29.2 MiB/s |  59.7 KiB |  00m00s
[ 74/154] Installing zip-0:3.0-40.fc40. 100% |  24.7 MiB/s | 707.1 KiB |  00m00s
[ 75/154] Installing gdbm-1:1.23-6.fc40 100% | 113.7 MiB/s | 465.8 KiB |  00m00s
[ 76/154] Installing cyrus-sasl-lib-0:2 100% |  73.7 MiB/s |   2.3 MiB |  00m00s
[ 77/154] Installing zstd-0:1.5.6-1.fc4 100% | 239.4 MiB/s |   1.7 MiB |  00m00s
[ 78/154] Installing libfdisk-0:2.40-13 100% | 177.7 MiB/s | 364.0 KiB |  00m00s
[ 79/154] Installing bzip2-0:1.0.8-18.f 100% |  47.0 MiB/s |  96.2 KiB |  00m00s
[ 80/154] Installing libxml2-0:2.12.6-1 100% | 242.9 MiB/s |   1.7 MiB |  00m00s
[ 81/154] Installing sqlite-libs-0:3.45 100% | 233.6 MiB/s |   1.4 MiB |  00m00s
[ 82/154] Installing ed-0:1.20.1-1.fc40 100% |  24.2 MiB/s | 148.8 KiB |  00m00s
[ 83/154] Installing patch-0:2.7.6-24.f 100% | 129.0 MiB/s | 264.3 KiB |  00m00s
[ 84/154] Installing elfutils-default-y 100% | 120.2 KiB/s |   2.0 KiB |  00m00s
>>> Running post-install scriptlet: elfutils-default-yama-scope-0:0.191-4.fc40.n
>>> Stop post-install scriptlet: elfutils-default-yama-scope-0:0.191-4.fc40.noar
[ 85/154] Installing cpio-0:2.15-1.fc40 100% | 122.2 MiB/s |   1.1 MiB |  00m00s
[ 86/154] Installing diffutils-0:3.10-5 100% | 158.6 MiB/s |   1.6 MiB |  00m00s
[ 87/154] Installing libgomp-0:14.0.1-0 100% | 169.5 MiB/s | 520.8 KiB |  00m00s
[ 88/154] Installing libpkgconf-0:2.1.0 100% |  73.6 MiB/s |  75.3 KiB |  00m00s
[ 89/154] Installing pkgconf-0:2.1.0-1. 100% |  41.5 MiB/s |  84.9 KiB |  00m00s
[ 90/154] Installing pkgconf-pkg-config 100% |   1.7 MiB/s |   1.8 KiB |  00m00s
[ 91/154] Installing libffi-0:3.4.4-7.f 100% |  40.5 MiB/s |  83.0 KiB |  00m00s
[ 92/154] Installing p11-kit-0:0.25.3-4 100% | 137.1 MiB/s |   2.2 MiB |  00m00s
[ 93/154] Installing p11-kit-trust-0:0. 100% |  18.3 MiB/s | 393.1 KiB |  00m00s
>>> Running post-install scriptlet: p11-kit-trust-0:0.25.3-4.fc40.x86_64
>>> Stop post-install scriptlet: p11-kit-trust-0:0.25.3-4.fc40.x86_64
[ 94/154] Installing keyutils-libs-0:1. 100% |  27.2 MiB/s |  55.8 KiB |  00m00s
[ 95/154] Installing libverto-0:0.3.2-8 100% |  15.3 MiB/s |  31.3 KiB |  00m00s
[ 96/154] Installing xxhash-libs-0:0.8. 100% |  43.9 MiB/s |  89.9 KiB |  00m00s
[ 97/154] Installing libbrotli-0:1.1.0- 100% | 162.5 MiB/s | 831.8 KiB |  00m00s
[ 98/154] Installing libtool-ltdl-0:2.4 100% |  65.7 MiB/s |  67.3 KiB |  00m00s
[ 99/154] Installing libnghttp2-0:1.59. 100% |  81.6 MiB/s | 167.2 KiB |  00m00s
[100/154] Installing rust-srpm-macros-0 100% |   5.4 MiB/s |   5.6 KiB |  00m00s
[101/154] Installing qt6-srpm-macros-0: 100% |   0.0   B/s | 732.0   B |  00m00s
[102/154] Installing qt5-srpm-macros-0: 100% | 750.0 KiB/s | 768.0   B |  00m00s
[103/154] Installing perl-srpm-macros-0 100% |   0.0   B/s |   1.1 KiB |  00m00s
[104/154] Installing package-notes-srpm 100% |   2.0 MiB/s |   2.0 KiB |  00m00s
[105/154] Installing openblas-srpm-macr 100% | 375.0 KiB/s | 384.0   B |  00m00s
[106/154] Installing ocaml-srpm-macros- 100% |   2.1 MiB/s |   2.2 KiB |  00m00s
[107/154] Installing kernel-srpm-macros 100% |   2.3 MiB/s |   2.3 KiB |  00m00s
[108/154] Installing gnat-srpm-macros-0 100% |   0.0   B/s |   1.3 KiB |  00m00s
[109/154] Installing ghc-srpm-macros-0: 100% | 968.8 KiB/s | 992.0   B |  00m00s
[110/154] Installing fpc-srpm-macros-0: 100% |   0.0   B/s | 420.0   B |  00m00s
[111/154] Installing ansible-srpm-macro 100% |  35.4 MiB/s |  36.2 KiB |  00m00s
[112/154] Installing coreutils-common-0 100% | 194.3 MiB/s |  11.5 MiB |  00m00s
[113/154] Installing openssl-libs-1:3.2 100% | 144.2 MiB/s |   7.8 MiB |  00m00s
[114/154] Installing coreutils-0:9.4-6. 100% | 135.2 MiB/s |   5.8 MiB |  00m00s
>>> Running pre-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc40.n
>>> Stop pre-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc40.noar
[115/154] Installing ca-certificates-0: 100% |   2.2 MiB/s |   2.3 MiB |  00m01s
>>> Running post-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc40.
>>> Stop post-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc40.noa
[116/154] Installing krb5-libs-0:1.21.2 100% | 153.0 MiB/s |   2.3 MiB |  00m00s
[117/154] Installing libtirpc-0:1.3.4-1 100% |  66.6 MiB/s | 204.6 KiB |  00m00s
[118/154] Installing gzip-0:1.13-1.fc40 100% |  76.3 MiB/s | 390.6 KiB |  00m00s
[119/154] Installing authselect-libs-0: 100% |  74.0 MiB/s | 833.2 KiB |  00m00s
[120/154] Installing libarchive-0:3.7.2 100% | 179.0 MiB/s | 916.6 KiB |  00m00s
[121/154] Installing authselect-0:1.5.0 100% |  38.6 MiB/s | 157.9 KiB |  00m00s
[122/154] Installing cracklib-0:2.9.11- 100% |  30.6 MiB/s | 250.3 KiB |  00m00s
[123/154] Installing libpwquality-0:1.4 100% |  46.7 MiB/s | 430.1 KiB |  00m00s
[124/154] Installing libnsl2-0:2.0.1-1. 100% |   3.6 MiB/s |  59.0 KiB |  00m00s
[125/154] Installing pam-0:1.6.0-2.fc40 100% |  64.7 MiB/s |   1.8 MiB |  00m00s
[126/154] Installing libssh-0:0.10.6-5. 100% | 124.8 MiB/s | 511.4 KiB |  00m00s
[127/154] Installing rpm-sequoia-0:1.6. 100% | 185.8 MiB/s |   2.2 MiB |  00m00s
[128/154] Installing rpm-libs-0:4.19.1. 100% | 139.0 MiB/s | 711.4 KiB |  00m00s
[129/154] Installing libevent-0:2.1.12- 100% | 146.4 MiB/s | 899.4 KiB |  00m00s
[130/154] Installing openldap-0:2.6.7-1 100% |  69.3 MiB/s | 638.9 KiB |  00m00s
[131/154] Installing libcurl-0:8.6.0-8. 100% | 151.2 MiB/s | 773.9 KiB |  00m00s
[132/154] Installing elfutils-libs-0:0. 100% |  90.4 MiB/s | 648.0 KiB |  00m00s
[133/154] Installing elfutils-debuginfo 100% |  32.7 MiB/s |  66.9 KiB |  00m00s
[134/154] Installing binutils-gold-0:2. 100% |  65.4 MiB/s |   2.0 MiB |  00m00s
>>> Running post-install scriptlet: binutils-gold-0:2.41-34.fc40.x86_64
>>> Stop post-install scriptlet: binutils-gold-0:2.41-34.fc40.x86_64
[135/154] Installing binutils-0:2.41-34 100% | 127.5 MiB/s |  26.4 MiB |  00m00s
>>> Running post-install scriptlet: binutils-0:2.41-34.fc40.x86_64
>>> Stop post-install scriptlet: binutils-0:2.41-34.fc40.x86_64
[136/154] Installing elfutils-0:0.191-4 100% | 182.6 MiB/s |   2.6 MiB |  00m00s
[137/154] Installing gdb-minimal-0:14.2 100% | 168.8 MiB/s |  12.7 MiB |  00m00s
[138/154] Installing debugedit-0:5.0-14 100% |  21.9 MiB/s | 201.7 KiB |  00m00s
[139/154] Installing rpm-build-libs-0:4 100% |  64.8 MiB/s | 199.2 KiB |  00m00s
[140/154] Installing curl-0:8.6.0-8.fc4 100% |  22.5 MiB/s | 736.9 KiB |  00m00s
>>> Running pre-install scriptlet: rpm-0:4.19.1.1-1.fc40.x86_64
>>> Stop pre-install scriptlet: rpm-0:4.19.1.1-1.fc40.x86_64
[141/154] Installing rpm-0:4.19.1.1-1.f 100% |  55.7 MiB/s |   2.4 MiB |  00m00s
[142/154] Installing efi-srpm-macros-0: 100% |  40.2 MiB/s |  41.2 KiB |  00m00s
[143/154] Installing lua-srpm-macros-0: 100% |   1.9 MiB/s |   1.9 KiB |  00m00s
[144/154] Installing zig-srpm-macros-0: 100% |   1.6 MiB/s |   1.7 KiB |  00m00s
[145/154] Installing fonts-srpm-macros- 100% |  27.6 MiB/s |  56.5 KiB |  00m00s
[146/154] Installing forge-srpm-macros- 100% |  37.7 MiB/s |  38.6 KiB |  00m00s
[147/154] Installing go-srpm-macros-0:3 100% |   6.7 MiB/s |  61.6 KiB |  00m00s
[148/154] Installing python-srpm-macros 100% |  25.0 MiB/s |  51.3 KiB |  00m00s
[149/154] Installing redhat-rpm-config- 100% |  37.4 MiB/s | 191.7 KiB |  00m00s
[150/154] Installing rpm-build-0:4.19.1 100% |  29.6 MiB/s | 182.0 KiB |  00m00s
[151/154] Installing pyproject-srpm-mac 100% |   1.0 MiB/s |   2.1 KiB |  00m00s
[152/154] Installing util-linux-0:2.40- 100% |  46.2 MiB/s |   3.7 MiB |  00m00s
>>> Running post-install scriptlet: util-linux-0:2.40-13.fc40.x86_64
>>> Stop post-install scriptlet: util-linux-0:2.40-13.fc40.x86_64
[153/154] Installing which-0:2.21-41.fc 100% |  26.8 MiB/s |  82.4 KiB |  00m00s
[154/154] Installing info-0:7.1-2.fc40. 100% | 240.7 KiB/s | 358.2 KiB |  00m01s
>>> Running post-transaction scriptlet: filesystem-0:3.18-8.fc40.x86_64
>>> Stop post-transaction scriptlet: filesystem-0:3.18-8.fc40.x86_64
>>> Running post-transaction scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.f
>>> Stop post-transaction scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc40
>>> Running post-transaction scriptlet: authselect-libs-0:1.5.0-5.fc40.x86_64
>>> Stop post-transaction scriptlet: authselect-libs-0:1.5.0-5.fc40.x86_64
>>> Running post-transaction scriptlet: rpm-0:4.19.1.1-1.fc40.x86_64
>>> Stop post-transaction scriptlet: rpm-0:4.19.1.1-1.fc40.x86_64
>>> Running trigger-install scriptlet: glibc-common-0:2.39-8.fc40.x86_64
>>> Stop trigger-install scriptlet: glibc-common-0:2.39-8.fc40.x86_64
>>> Running trigger-install scriptlet: info-0:7.1-2.fc40.x86_64
>>> Stop trigger-install scriptlet: info-0:7.1-2.fc40.x86_64
Finish: installing minimal buildroot with dnf5
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: alternatives-1.26-3.fc40.x86_64
ansible-srpm-macros-1-14.fc40.noarch
audit-libs-4.0.1-1.fc40.x86_64
authselect-1.5.0-5.fc40.x86_64
authselect-libs-1.5.0-5.fc40.x86_64
basesystem-11-20.fc40.noarch
bash-5.2.26-3.fc40.x86_64
binutils-2.41-34.fc40.x86_64
binutils-gold-2.41-34.fc40.x86_64
bzip2-1.0.8-18.fc40.x86_64
bzip2-libs-1.0.8-18.fc40.x86_64
ca-certificates-2023.2.62_v7.0.401-6.fc40.noarch
coreutils-9.4-6.fc40.x86_64
coreutils-common-9.4-6.fc40.x86_64
cpio-2.15-1.fc40.x86_64
cracklib-2.9.11-5.fc40.x86_64
crypto-policies-20240201-2.git9f501f3.fc40.noarch
curl-8.6.0-8.fc40.x86_64
cyrus-sasl-lib-2.1.28-19.fc40.x86_64
debugedit-5.0-14.fc40.x86_64
diffutils-3.10-5.fc40.x86_64
dwz-0.15-6.fc40.x86_64
ed-1.20.1-1.fc40.x86_64
efi-srpm-macros-5-11.fc40.noarch
elfutils-0.191-4.fc40.x86_64
elfutils-debuginfod-client-0.191-4.fc40.x86_64
elfutils-default-yama-scope-0.191-4.fc40.noarch
elfutils-libelf-0.191-4.fc40.x86_64
elfutils-libs-0.191-4.fc40.x86_64
fedora-gpg-keys-40-1.noarch
fedora-release-40-39.noarch
fedora-release-common-40-39.noarch
fedora-release-identity-basic-40-39.noarch
fedora-repos-40-1.noarch
file-5.45-4.fc40.x86_64
file-libs-5.45-4.fc40.x86_64
filesystem-3.18-8.fc40.x86_64
findutils-4.9.0-8.fc40.x86_64
fonts-srpm-macros-2.0.5-14.fc40.noarch
forge-srpm-macros-0.2.0-3.fc40.noarch
fpc-srpm-macros-1.3-12.fc40.noarch
gawk-5.3.0-3.fc40.x86_64
gdb-minimal-14.2-1.fc40.x86_64
gdbm-1.23-6.fc40.x86_64
gdbm-libs-1.23-6.fc40.x86_64
ghc-srpm-macros-1.9-1.fc40.noarch
glibc-2.39-8.fc40.x86_64
glibc-common-2.39-8.fc40.x86_64
glibc-gconv-extra-2.39-8.fc40.x86_64
glibc-minimal-langpack-2.39-8.fc40.x86_64
gmp-6.2.1-8.fc40.x86_64
gnat-srpm-macros-6-5.fc40.noarch
go-srpm-macros-3.5.0-1.fc40.noarch
gpg-pubkey-a15b79cc-63d04c2c
grep-3.11-7.fc40.x86_64
gzip-1.13-1.fc40.x86_64
info-7.1-2.fc40.x86_64
jansson-2.13.1-9.fc40.x86_64
kernel-srpm-macros-1.0-23.fc40.noarch
keyutils-libs-1.6.3-3.fc40.x86_64
krb5-libs-1.21.2-5.fc40.x86_64
libacl-2.3.2-1.fc40.x86_64
libarchive-3.7.2-3.fc40.x86_64
libattr-2.5.2-3.fc40.x86_64
libblkid-2.40-13.fc40.x86_64
libbrotli-1.1.0-3.fc40.x86_64
libcap-2.69-8.fc40.x86_64
libcap-ng-0.8.4-4.fc40.x86_64
libcom_err-1.47.0-5.fc40.x86_64
libcurl-8.6.0-8.fc40.x86_64
libeconf-0.6.2-1.fc40.x86_64
libevent-2.1.12-12.fc40.x86_64
libfdisk-2.40-13.fc40.x86_64
libffi-3.4.4-7.fc40.x86_64
libgcc-14.0.1-0.15.fc40.x86_64
libgomp-14.0.1-0.15.fc40.x86_64
libidn2-2.3.7-1.fc40.x86_64
libmount-2.40-13.fc40.x86_64
libnghttp2-1.59.0-3.fc40.x86_64
libnsl2-2.0.1-1.fc40.x86_64
libpkgconf-2.1.0-1.fc40.x86_64
libpsl-0.21.5-3.fc40.x86_64
libpwquality-1.4.5-9.fc40.x86_64
libselinux-3.6-4.fc40.x86_64
libsemanage-3.6-3.fc40.x86_64
libsepol-3.6-3.fc40.x86_64
libsmartcols-2.40-13.fc40.x86_64
libssh-0.10.6-5.fc40.x86_64
libssh-config-0.10.6-5.fc40.noarch
libstdc++-14.0.1-0.15.fc40.x86_64
libtasn1-4.19.0-6.fc40.x86_64
libtirpc-1.3.4-1.rc3.fc40.x86_64
libtool-ltdl-2.4.7-10.fc40.x86_64
libunistring-1.1-7.fc40.x86_64
libutempter-1.2.1-13.fc40.x86_64
libuuid-2.40-13.fc40.x86_64
libverto-0.3.2-8.fc40.x86_64
libxcrypt-4.4.36-5.fc40.x86_64
libxml2-2.12.6-1.fc40.x86_64
libzstd-1.5.6-1.fc40.x86_64
lua-libs-5.4.6-5.fc40.x86_64
lua-srpm-macros-1-13.fc40.noarch
lz4-libs-1.9.4-6.fc40.x86_64
mpfr-4.2.1-3.fc40.x86_64
ncurses-base-6.4-12.20240127.fc40.noarch
ncurses-libs-6.4-12.20240127.fc40.x86_64
ocaml-srpm-macros-9-3.fc40.noarch
openblas-srpm-macros-2-16.fc40.noarch
openldap-2.6.7-1.fc40.x86_64
openssl-libs-3.2.1-2.fc40.x86_64
p11-kit-0.25.3-4.fc40.x86_64
p11-kit-trust-0.25.3-4.fc40.x86_64
package-notes-srpm-macros-0.5-11.fc40.noarch
pam-1.6.0-2.fc40.x86_64
pam-libs-1.6.0-2.fc40.x86_64
patch-2.7.6-24.fc40.x86_64
pcre2-10.42-2.fc40.2.x86_64
pcre2-syntax-10.42-2.fc40.2.noarch
perl-srpm-macros-1-53.fc40.noarch
pkgconf-2.1.0-1.fc40.x86_64
pkgconf-m4-2.1.0-1.fc40.noarch
pkgconf-pkg-config-2.1.0-1.fc40.x86_64
popt-1.19-6.fc40.x86_64
publicsuffix-list-dafsa-20240107-3.fc40.noarch
pyproject-srpm-macros-1.12.0-1.fc40.noarch
python-srpm-macros-3.12-7.fc40.noarch
qt5-srpm-macros-5.15.13-1.fc40.noarch
qt6-srpm-macros-6.6.2-1.fc40.noarch
readline-8.2-8.fc40.x86_64
redhat-rpm-config-286-1.fc40.noarch
rpm-4.19.1.1-1.fc40.x86_64
rpm-build-4.19.1.1-1.fc40.x86_64
rpm-build-libs-4.19.1.1-1.fc40.x86_64
rpm-libs-4.19.1.1-1.fc40.x86_64
rpm-sequoia-1.6.0-2.fc40.x86_64
rust-srpm-macros-26.2-1.fc40.noarch
sed-4.9-1.fc40.x86_64
setup-2.14.5-2.fc40.noarch
shadow-utils-4.15.1-2.fc40.x86_64
sqlite-libs-3.45.1-2.fc40.x86_64
systemd-libs-255.4-1.fc40.x86_64
tar-1.35-3.fc40.x86_64
unzip-6.0-63.fc40.x86_64
util-linux-2.40-13.fc40.x86_64
util-linux-core-2.40-13.fc40.x86_64
which-2.21-41.fc40.x86_64
xxhash-libs-0.8.2-2.fc40.x86_64
xz-5.4.6-3.fc40.x86_64
xz-libs-5.4.6-3.fc40.x86_64
zig-srpm-macros-1-2.fc40.noarch
zip-3.0-40.fc40.x86_64
zlib-ng-compat-2.1.6-2.fc40.x86_64
zstd-1.5.6-1.fc40.x86_64
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1714003200
Wrote: /builddir/build/SRPMS/python-pyhmmer-0.10.12-1.fc40.src.rpm
Finish: rpmbuild -bs
cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-40-x86_64-1714078417.276338/root/var/log’: No such file or directory
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-40-x86_64-1714078417.276338/root/var/log/dnf5.log
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-yb5vdkh1/python-pyhmmer/python-pyhmmer.spec) Config(child) 1 minutes 46 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/python-pyhmmer-0.10.12-1.fc40.src.rpm)  Config(fedora-40-x86_64)
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-40-x86_64-bootstrap-1714078417.276338/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-40-x86_64-bootstrap-1714078417.276338/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-40-x86_64-1714078417.276338/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.19.1.1-1.fc40.x86_64
  rpm-sequoia-1.6.0-2.fc40.x86_64
  python3-dnf-4.19.2-1.fc40.noarch
  yum-4.19.2-1.fc40.noarch
  dnf5-5.1.17-1.fc40.x86_64
  dnf5-plugins-5.1.17-1.fc40.x86_64
Finish: chroot init
Start: build phase for python-pyhmmer-0.10.12-1.fc40.src.rpm
Start: build setup for python-pyhmmer-0.10.12-1.fc40.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1714003200
Wrote: /builddir/build/SRPMS/python-pyhmmer-0.10.12-1.fc40.src.rpm
Updating and loading repositories:
 updates                                100% | 177.5 KiB/s |  21.7 KiB |  00m00s
 fedora                                 100% | 145.7 KiB/s |  21.4 KiB |  00m00s
 Copr repository                        100% |  51.3 KiB/s |   1.5 KiB |  00m00s
Repositories loaded.
Package                  Arch   Version          Repository      Size
Installing:                                                          
 gcc                     x86_64 14.0.1-0.15.fc40 fedora     104.0 MiB
 python3-devel           x86_64 3.12.2-2.fc40    fedora       1.2 MiB
Installing dependencies:                                             
 annobin-docs            noarch 12.46-1.fc40     updates     95.7 KiB
 annobin-plugin-gcc      x86_64 12.46-1.fc40     updates    969.9 KiB
 cpp                     x86_64 14.0.1-0.15.fc40 fedora      34.9 MiB
 expat                   x86_64 2.6.2-1.fc40     updates    280.8 KiB
 gc                      x86_64 8.2.2-6.fc40     fedora     258.7 KiB
 gcc-plugin-annobin      x86_64 14.0.1-0.15.fc40 fedora      57.1 KiB
 glibc-devel             x86_64 2.39-8.fc40      updates     36.3 KiB
 glibc-headers-x86       noarch 2.39-8.fc40      updates      2.2 MiB
 guile30                 x86_64 3.0.7-12.fc40    fedora      51.5 MiB
 kernel-headers          x86_64 6.8.3-300.fc40   fedora       6.2 MiB
 libb2                   x86_64 0.98.1-11.fc40   fedora      42.2 KiB
 libmpc                  x86_64 1.3.1-5.fc40     fedora     164.7 KiB
 libxcrypt-devel         x86_64 4.4.36-5.fc40    fedora      30.3 KiB
 make                    x86_64 1:4.4.1-6.fc40   fedora       1.8 MiB
 mpdecimal               x86_64 2.5.1-9.fc40     fedora     200.9 KiB
 pyproject-rpm-macros    noarch 1.12.0-1.fc40    fedora      98.8 KiB
 python-pip-wheel        noarch 23.3.2-1.fc40    fedora       1.5 MiB
 python-rpm-macros       noarch 3.12-7.fc40      fedora      22.1 KiB
 python3                 x86_64 3.12.2-2.fc40    fedora      31.9 KiB
 python3-libs            x86_64 3.12.2-2.fc40    fedora      41.0 MiB
 python3-packaging       noarch 23.2-4.fc40      fedora     421.1 KiB
 python3-rpm-generators  noarch 14-10.fc40       fedora      81.7 KiB
 python3-rpm-macros      noarch 3.12-7.fc40      fedora       6.4 KiB
 tzdata                  noarch 2024a-5.fc40     updates      1.6 MiB

Transaction Summary:
 Installing:       26 packages

Total size of inbound packages is 74 MiB. Need to download 74 MiB.
After this operation 249 MiB will be used (install 249 MiB, remove 0 B).
[ 1/26] python3-devel-0:3.12.2-2.fc40.x 100% |   3.7 MiB/s | 312.5 KiB |  00m00s
[ 2/26] libmpc-0:1.3.1-5.fc40.x86_64    100% |   5.8 MiB/s |  71.1 KiB |  00m00s
[ 3/26] make-1:4.4.1-6.fc40.x86_64      100% |  21.3 MiB/s | 587.6 KiB |  00m00s
[ 4/26] cpp-0:14.0.1-0.15.fc40.x86_64   100% |  28.4 MiB/s |  12.0 MiB |  00m00s
[ 5/26] python3-libs-0:3.12.2-2.fc40.x8 100% |  29.7 MiB/s |   9.1 MiB |  00m00s
[ 6/26] libb2-0:0.98.1-11.fc40.x86_64   100% |   3.1 MiB/s |  25.5 KiB |  00m00s
[ 7/26] mpdecimal-0:2.5.1-9.fc40.x86_64 100% |   8.7 MiB/s |  88.6 KiB |  00m00s
[ 8/26] python-pip-wheel-0:23.3.2-1.fc4 100% |  27.2 MiB/s |   1.5 MiB |  00m00s
[ 9/26] gc-0:8.2.2-6.fc40.x86_64        100% |   7.7 MiB/s | 110.2 KiB |  00m00s
[10/26] gcc-plugin-annobin-0:14.0.1-0.1 100% |   2.9 MiB/s |  47.7 KiB |  00m00s
[11/26] pyproject-rpm-macros-0:1.12.0-1 100% |   2.0 MiB/s |  41.4 KiB |  00m00s
[12/26] python-rpm-macros-0:3.12-7.fc40 100% | 948.0 KiB/s |  18.0 KiB |  00m00s
[13/26] guile30-0:3.0.7-12.fc40.x86_64  100% |  38.6 MiB/s |   8.1 MiB |  00m00s
[14/26] python3-rpm-generators-0:14-10. 100% | 538.3 KiB/s |  29.6 KiB |  00m00s
[15/26] python3-rpm-macros-0:3.12-7.fc4 100% |   1.0 MiB/s |  12.8 KiB |  00m00s
[16/26] python3-packaging-0:23.2-4.fc40 100% |  10.2 MiB/s | 125.2 KiB |  00m00s
[17/26] python3-0:3.12.2-2.fc40.x86_64  100% |   2.0 MiB/s |  27.0 KiB |  00m00s
[18/26] gcc-0:14.0.1-0.15.fc40.x86_64   100% |  37.3 MiB/s |  37.2 MiB |  00m01s
[19/26] expat-0:2.6.2-1.fc40.x86_64     100% | 241.8 KiB/s | 113.1 KiB |  00m00s
[20/26] tzdata-0:2024a-5.fc40.noarch    100% |   1.4 MiB/s | 716.1 KiB |  00m01s
[21/26] annobin-docs-0:12.46-1.fc40.noa 100% | 733.9 KiB/s |  89.5 KiB |  00m00s
[22/26] glibc-devel-0:2.39-8.fc40.x86_6 100% |   1.0 MiB/s | 114.9 KiB |  00m00s
[23/26] libxcrypt-devel-0:4.4.36-5.fc40 100% |   1.6 MiB/s |  28.6 KiB |  00m00s
[24/26] kernel-headers-0:6.8.3-300.fc40 100% |  17.7 MiB/s |   1.6 MiB |  00m00s
[25/26] glibc-headers-x86-0:2.39-8.fc40 100% |   1.6 MiB/s | 605.2 KiB |  00m00s
[26/26] annobin-plugin-gcc-0:12.46-1.fc 100% |   1.1 MiB/s | 960.3 KiB |  00m01s
--------------------------------------------------------------------------------
[26/26] Total                           100% |  35.7 MiB/s |  73.6 MiB |  00m02s
Running transaction
[ 1/28] Verify package files            100% |  89.0   B/s |  26.0   B |  00m00s
[ 2/28] Prepare transaction             100% | 388.0   B/s |  26.0   B |  00m00s
[ 3/28] Installing python-rpm-macros-0: 100% |  22.3 MiB/s |  22.8 KiB |  00m00s
[ 4/28] Installing python3-rpm-macros-0 100% |   0.0   B/s |   6.7 KiB |  00m00s
[ 5/28] Installing libmpc-0:1.3.1-5.fc4 100% |  81.2 MiB/s | 166.2 KiB |  00m00s
[ 6/28] Installing cpp-0:14.0.1-0.15.fc 100% | 296.2 MiB/s |  35.0 MiB |  00m00s
[ 7/28] Installing pyproject-rpm-macros 100% |  32.8 MiB/s | 100.8 KiB |  00m00s
[ 8/28] Installing kernel-headers-0:6.8 100% | 114.0 MiB/s |   6.4 MiB |  00m00s
[ 9/28] Installing glibc-headers-x86-0: 100% |  93.9 MiB/s |   2.3 MiB |  00m00s
[10/28] Installing libxcrypt-devel-0:4. 100% |  15.9 MiB/s |  32.6 KiB |  00m00s
[11/28] Installing glibc-devel-0:2.39-8 100% |  19.4 MiB/s |  39.7 KiB |  00m00s
[12/28] Installing annobin-docs-0:12.46 100% |  18.9 MiB/s |  96.7 KiB |  00m00s
[13/28] Installing tzdata-0:2024a-5.fc4 100% |  26.4 MiB/s |   1.9 MiB |  00m00s
[14/28] Installing expat-0:2.6.2-1.fc40 100% |  92.1 MiB/s | 282.9 KiB |  00m00s
[15/28] Installing gc-0:8.2.2-6.fc40.x8 100% |  63.8 MiB/s | 261.2 KiB |  00m00s
[16/28] Installing guile30-0:3.0.7-12.f 100% | 312.6 MiB/s |  51.6 MiB |  00m00s
[17/28] Installing make-1:4.4.1-6.fc40. 100% | 163.7 MiB/s |   1.8 MiB |  00m00s
[18/28] Installing gcc-0:14.0.1-0.15.fc 100% | 296.3 MiB/s | 104.0 MiB |  00m00s
>>> Running trigger-install scriptlet: redhat-rpm-config-0:286-1.fc40.noarch
>>> Stop trigger-install scriptlet: redhat-rpm-config-0:286-1.fc40.noarch
[19/28] Installing python-pip-wheel-0:2 100% | 380.0 MiB/s |   1.5 MiB |  00m00s
[20/28] Installing mpdecimal-0:2.5.1-9. 100% | 197.3 MiB/s | 202.0 KiB |  00m00s
[21/28] Installing libb2-0:0.98.1-11.fc 100% |  42.3 MiB/s |  43.3 KiB |  00m00s
[22/28] Installing python3-0:3.12.2-2.f 100% |   4.7 MiB/s |  33.6 KiB |  00m00s
[23/28] Installing python3-libs-0:3.12. 100% | 191.6 MiB/s |  41.4 MiB |  00m00s
[24/28] Installing python3-packaging-0: 100% | 105.4 MiB/s | 431.9 KiB |  00m00s
[25/28] Installing python3-rpm-generato 100% |  81.0 MiB/s |  82.9 KiB |  00m00s
[26/28] Installing python3-devel-0:3.12 100% |  91.1 MiB/s |   1.3 MiB |  00m00s
[27/28] Installing gcc-plugin-annobin-0 100% |   1.8 MiB/s |  58.6 KiB |  00m00s
>>> Running trigger-install scriptlet: redhat-rpm-config-0:286-1.fc40.noarch
>>> Stop trigger-install scriptlet: redhat-rpm-config-0:286-1.fc40.noarch
[28/28] Installing annobin-plugin-gcc-0 100% |   3.7 MiB/s | 971.4 KiB |  00m00s
>>> Running trigger-install scriptlet: redhat-rpm-config-0:286-1.fc40.noarch
>>> Stop trigger-install scriptlet: redhat-rpm-config-0:286-1.fc40.noarch
>>> Running trigger-install scriptlet: glibc-common-0:2.39-8.fc40.x86_64
>>> Stop trigger-install scriptlet: glibc-common-0:2.39-8.fc40.x86_64
>>> Running trigger-install scriptlet: info-0:7.1-2.fc40.x86_64
>>> Stop trigger-install scriptlet: info-0:7.1-2.fc40.x86_64
Finish: build setup for python-pyhmmer-0.10.12-1.fc40.src.rpm
Start: rpmbuild python-pyhmmer-0.10.12-1.fc40.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1714003200
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.H8Wrxe
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf pyhmmer-0.10.12
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/pyhmmer-0.10.12.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd pyhmmer-0.10.12
+ rm -rf /builddir/build/BUILD/pyhmmer-0.10.12-SPECPARTS
+ /usr/bin/mkdir -p /builddir/build/BUILD/pyhmmer-0.10.12-SPECPARTS
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.XtJTb1
+ umask 022
+ cd /builddir/build/BUILD
+ cd pyhmmer-0.10.12
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(pip) >= 19'
+ echo 'python3dist(packaging)'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/pyhmmer-0.10.12/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ TMPDIR=/builddir/build/BUILD/pyhmmer-0.10.12/.pyproject-builddir
+ RPM_TOXENV=py312
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/pyhmmer-0.10.12/pyproject-wheeldir --output /builddir/build/BUILD/python-pyhmmer-0.10.12-1.fc40.x86_64-pyproject-buildrequires
Handling setuptools >=46.4 from build-system.requires
Requirement not satisfied: setuptools >=46.4
Handling cython ~=3.0 from build-system.requires
Requirement not satisfied: cython ~=3.0
Exiting dependency generation pass: build backend
+ cat /builddir/build/BUILD/python-pyhmmer-0.10.12-1.fc40.x86_64-pyproject-buildrequires
+ rm -rfv '*.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/python-pyhmmer-0.10.12-1.fc40.buildreqs.nosrc.rpm
INFO: Going to install missing dynamic buildrequires
Updating and loading repositories:
 updates                                100% |  57.6 KiB/s |  21.7 KiB |  00m00s
 fedora                                 100% |  63.3 KiB/s |  21.4 KiB |  00m00s
 Copr repository                        100% |   7.4 KiB/s |   1.5 KiB |  00m00s
Repositories loaded.
Package "gcc-14.0.1-0.15.fc40.x86_64" is already installed.
Package "pyproject-rpm-macros-1.12.0-1.fc40.noarch" is already installed.
Package "python3-devel-3.12.2-2.fc40.x86_64" is already installed.
Package             Arch   Version       Repository      Size
Installing:                                                  
 python3-cython     x86_64 3.0.10-1.fc40 copr_base   17.5 MiB
 python3-pip        noarch 23.3.2-1.fc40 fedora      14.2 MiB
 python3-setuptools noarch 69.0.3-3.fc40 fedora       7.1 MiB

Transaction Summary:
 Installing:        3 packages

Total size of inbound packages is 8 MiB. Need to download 8 MiB.
After this operation 39 MiB will be used (install 39 MiB, remove 0 B).
Package "python3-packaging-23.2-4.fc40.noarch" is already installed.

[1/3] python3-cython-0:3.0.10-1.fc40.x8 100% |  26.0 MiB/s |   3.7 MiB |  00m00s
[2/3] python3-setuptools-0:69.0.3-3.fc4 100% |   3.1 MiB/s |   1.5 MiB |  00m01s
[3/3] python3-pip-0:23.3.2-1.fc40.noarc 100% |   4.6 MiB/s |   3.2 MiB |  00m01s
--------------------------------------------------------------------------------
[3/3] Total                             100% |   7.4 MiB/s |   8.4 MiB |  00m01s
Running transaction
[1/5] Verify package files              100% |  90.0   B/s |   3.0   B |  00m00s
[2/5] Prepare transaction               100% |  61.0   B/s |   3.0   B |  00m00s
[3/5] Installing python3-setuptools-0:6 100% | 125.9 MiB/s |   7.3 MiB |  00m00s
[4/5] Installing python3-pip-0:23.3.2-1 100% | 130.7 MiB/s |  14.5 MiB |  00m00s
[5/5] Installing python3-cython-0:3.0.1 100% | 172.8 MiB/s |  17.6 MiB |  00m00s
>>> Running trigger-install scriptlet: glibc-common-0:2.39-8.fc40.x86_64
>>> Stop trigger-install scriptlet: glibc-common-0:2.39-8.fc40.x86_64
Warning: skipped PGP checks for 1 package(s).
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1714003200
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.PqilrS
+ umask 022
+ cd /builddir/build/BUILD
+ cd pyhmmer-0.10.12
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(pip) >= 19'
+ echo 'python3dist(packaging)'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/pyhmmer-0.10.12/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ TMPDIR=/builddir/build/BUILD/pyhmmer-0.10.12/.pyproject-builddir
+ RPM_TOXENV=py312
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/pyhmmer-0.10.12/pyproject-wheeldir --output /builddir/build/BUILD/python-pyhmmer-0.10.12-1.fc40.x86_64-pyproject-buildrequires
Handling setuptools >=46.4 from build-system.requires
Requirement satisfied: setuptools >=46.4
   (installed: setuptools 69.0.3)
Handling cython ~=3.0 from build-system.requires
Requirement satisfied: cython ~=3.0
   (installed: cython 3.0.10)
Handling wheel from get_requires_for_build_wheel
Requirement not satisfied: wheel
Handling setuptools >=46.4 from get_requires_for_build_wheel
Requirement satisfied: setuptools >=46.4
   (installed: setuptools 69.0.3)
Handling cython ~=3.0 from get_requires_for_build_wheel
Requirement satisfied: cython ~=3.0
   (installed: cython 3.0.10)
Exiting dependency generation pass: get_requires_for_build_wheel
+ cat /builddir/build/BUILD/python-pyhmmer-0.10.12-1.fc40.x86_64-pyproject-buildrequires
+ rm -rfv '*.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/python-pyhmmer-0.10.12-1.fc40.buildreqs.nosrc.rpm
INFO: Going to install missing dynamic buildrequires
Updating and loading repositories:
 updates                                100% |  59.6 KiB/s |  21.6 KiB |  00m00s
 fedora                                 100% | 151.9 KiB/s |  21.4 KiB |  00m00s
 Copr repository                        100% |  49.7 KiB/s |   1.5 KiB |  00m00s
Repositories loaded.
Package "gcc-14.0.1-0.15.fc40.x86_64" is already installed.
Package "pyproject-rpm-macros-1.12.0-1.fc40.noarch" is already installed.
Package "python3-devel-3.12.2-2.fc40.x86_64" is already installed.
Package "python3-packaging-23.2-4.fc40.noarch" is already installed.
Package "python3-pip-23.3.2-1.fc40.noarch" is already installed.
Package "python3-setuptools-69.0.3-3.fc40.noarch" is already installed.

Package        Arch   Version         Repository      Size
Installing:                                               
 python3-wheel noarch 1:0.41.2-3.fc40 fedora     507.1 KiB

Transaction Summary:
 Installing:        1 packages

Total size of inbound packages is 163 KiB. Need to download 163 KiB.
After this operation 507 KiB will be used (install 507 KiB, remove 0 B).
[1/1] python3-wheel-1:0.41.2-3.fc40.noa 100% | 297.3 KiB/s | 162.9 KiB |  00m01s
--------------------------------------------------------------------------------
[1/1] Total                             100% | 179.6 KiB/s | 162.9 KiB |  00m01s
Running transaction
[1/3] Verify package files              100% |   1.0 KiB/s |   1.0   B |  00m00s
[2/3] Prepare transaction               100% | 100.0   B/s |   1.0   B |  00m00s
[3/3] Installing python3-wheel-1:0.41.2 100% |  11.7 MiB/s | 526.1 KiB |  00m00s
>>> Running trigger-install scriptlet: glibc-common-0:2.39-8.fc40.x86_64
>>> Stop trigger-install scriptlet: glibc-common-0:2.39-8.fc40.x86_64
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1714003200
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.SlbPGZ
+ umask 022
+ cd /builddir/build/BUILD
+ cd pyhmmer-0.10.12
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(pip) >= 19'
+ echo 'python3dist(packaging)'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/pyhmmer-0.10.12/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ TMPDIR=/builddir/build/BUILD/pyhmmer-0.10.12/.pyproject-builddir
+ RPM_TOXENV=py312
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/pyhmmer-0.10.12/pyproject-wheeldir --output /builddir/build/BUILD/python-pyhmmer-0.10.12-1.fc40.x86_64-pyproject-buildrequires
Handling setuptools >=46.4 from build-system.requires
Requirement satisfied: setuptools >=46.4
   (installed: setuptools 69.0.3)
Handling cython ~=3.0 from build-system.requires
Requirement satisfied: cython ~=3.0
   (installed: cython 3.0.10)
Handling wheel from get_requires_for_build_wheel
Requirement satisfied: wheel
   (installed: wheel 0.41.2)
Handling setuptools >=46.4 from get_requires_for_build_wheel
Requirement satisfied: setuptools >=46.4
   (installed: setuptools 69.0.3)
Handling cython ~=3.0 from get_requires_for_build_wheel
Requirement satisfied: cython ~=3.0
   (installed: cython 3.0.10)
running dist_info
writing pyhmmer.egg-info/PKG-INFO
writing dependency_links to pyhmmer.egg-info/dependency_links.txt
writing requirements to pyhmmer.egg-info/requires.txt
writing top-level names to pyhmmer.egg-info/top_level.txt
reading manifest file 'pyhmmer.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no previously-included files matching '*.ai' found under directory 'vendor/hmmer'
warning: no previously-included files matching '*.pl' found under directory 'vendor'
no previously-included directories found matching 'vendor/easel/demotic'
no previously-included directories found matching 'vendor/easel/documentation'
no previously-included directories found matching 'vendor/easel/esl_msa_testfiles'
no previously-included directories found matching 'vendor/easel/miniapps'
no previously-included directories found matching 'vendor/easel/testsuite'
no previously-included directories found matching 'vendor/hmmer/autobuild'
no previously-included directories found matching 'vendor/hmmer/documentation'
no previously-included directories found matching 'vendor/hmmer/contrib'
no previously-included directories found matching 'vendor/hmmer/profmark'
no previously-included directories found matching 'vendor/hmmer/testsuite'
no previously-included directories found matching 'vendor/hmmer/test-speed'
no previously-included directories found matching 'vendor/hmmer/tutorial'
adding license file 'COPYING'
writing manifest file 'pyhmmer.egg-info/SOURCES.txt'
creating '/builddir/build/BUILD/pyhmmer-0.10.12/pyhmmer-0.10.12.dist-info'
Handling psutil ~=5.8 from hook generated metadata: Requires-Dist (pyhmmer)
Requirement not satisfied: psutil ~=5.8
+ cat /builddir/build/BUILD/python-pyhmmer-0.10.12-1.fc40.x86_64-pyproject-buildrequires
+ rm -rfv pyhmmer-0.10.12.dist-info/
removed 'pyhmmer-0.10.12.dist-info/top_level.txt'
removed 'pyhmmer-0.10.12.dist-info/METADATA'
removed 'pyhmmer-0.10.12.dist-info/COPYING'
removed directory 'pyhmmer-0.10.12.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/python-pyhmmer-0.10.12-1.fc40.buildreqs.nosrc.rpm
INFO: Going to install missing dynamic buildrequires
Updating and loading repositories:
 updates                                100% |  63.3 KiB/s |  21.7 KiB |  00m00s
 fedora                                 100% | 240.6 KiB/s |  21.4 KiB |  00m00s
 Copr repository                        100% |  48.1 KiB/s |   1.5 KiB |  00m00s
Repositories loaded.
Package "gcc-14.0.1-0.15.fc40.x86_64" is already installed.
Package "pyproject-rpm-macros-1.12.0-1.fc40.noarch" is already installed.
Package "python3-devel-3.12.2-2.fc40.x86_64" is already installed.
Package "python3-packaging-23.2-4.fc40.noarch" is already installed.
Package "python3-pip-23.3.2-1.fc40.noarch" is already installed.
Package "python3-setuptools-69.0.3-3.fc40.noarch" is already installed.
Package "python3-wheel-1:0.41.2-3.fc40.noarch" is already installed.

Package         Arch   Version      Repository      Size
Installing:                                             
 python3-psutil x86_64 5.9.8-1.fc40 fedora       1.4 MiB

Transaction Summary:
 Installing:        1 packages

Total size of inbound packages is 269 KiB. Need to download 269 KiB.
After this operation 1 MiB will be used (install 1 MiB, remove 0 B).
[1/1] python3-psutil-0:5.9.8-1.fc40.x86 100% | 632.1 KiB/s | 269.3 KiB |  00m00s
--------------------------------------------------------------------------------
[1/1] Total                             100% | 482.6 KiB/s | 269.3 KiB |  00m01s
Running transaction
[1/3] Verify package files              100% |   1.0 KiB/s |   1.0   B |  00m00s
[2/3] Prepare transaction               100% |  33.0   B/s |   1.0   B |  00m00s
[3/3] Installing python3-psutil-0:5.9.8 100% |  32.0 MiB/s |   1.4 MiB |  00m00s
>>> Running trigger-install scriptlet: glibc-common-0:2.39-8.fc40.x86_64
>>> Stop trigger-install scriptlet: glibc-common-0:2.39-8.fc40.x86_64
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1714003200
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.n614f5
+ umask 022
+ cd /builddir/build/BUILD
+ cd pyhmmer-0.10.12
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(pip) >= 19'
+ echo 'python3dist(packaging)'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/pyhmmer-0.10.12/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ TMPDIR=/builddir/build/BUILD/pyhmmer-0.10.12/.pyproject-builddir
+ RPM_TOXENV=py312
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/pyhmmer-0.10.12/pyproject-wheeldir --output /builddir/build/BUILD/python-pyhmmer-0.10.12-1.fc40.x86_64-pyproject-buildrequires
Handling setuptools >=46.4 from build-system.requires
Requirement satisfied: setuptools >=46.4
   (installed: setuptools 69.0.3)
Handling cython ~=3.0 from build-system.requires
Requirement satisfied: cython ~=3.0
   (installed: cython 3.0.10)
Handling wheel from get_requires_for_build_wheel
Requirement satisfied: wheel
   (installed: wheel 0.41.2)
Handling setuptools >=46.4 from get_requires_for_build_wheel
Requirement satisfied: setuptools >=46.4
   (installed: setuptools 69.0.3)
Handling cython ~=3.0 from get_requires_for_build_wheel
Requirement satisfied: cython ~=3.0
   (installed: cython 3.0.10)
running dist_info
writing pyhmmer.egg-info/PKG-INFO
writing dependency_links to pyhmmer.egg-info/dependency_links.txt
writing requirements to pyhmmer.egg-info/requires.txt
writing top-level names to pyhmmer.egg-info/top_level.txt
reading manifest file 'pyhmmer.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no previously-included files matching '*.ai' found under directory 'vendor/hmmer'
warning: no previously-included files matching '*.pl' found under directory 'vendor'
no previously-included directories found matching 'vendor/easel/demotic'
no previously-included directories found matching 'vendor/easel/documentation'
no previously-included directories found matching 'vendor/easel/esl_msa_testfiles'
no previously-included directories found matching 'vendor/easel/miniapps'
no previously-included directories found matching 'vendor/easel/testsuite'
no previously-included directories found matching 'vendor/hmmer/autobuild'
no previously-included directories found matching 'vendor/hmmer/documentation'
no previously-included directories found matching 'vendor/hmmer/contrib'
no previously-included directories found matching 'vendor/hmmer/profmark'
no previously-included directories found matching 'vendor/hmmer/testsuite'
no previously-included directories found matching 'vendor/hmmer/test-speed'
no previously-included directories found matching 'vendor/hmmer/tutorial'
adding license file 'COPYING'
writing manifest file 'pyhmmer.egg-info/SOURCES.txt'
creating '/builddir/build/BUILD/pyhmmer-0.10.12/pyhmmer-0.10.12.dist-info'
Handling psutil ~=5.8 from hook generated metadata: Requires-Dist (pyhmmer)
Requirement satisfied: psutil ~=5.8
   (installed: psutil 5.9.8)
+ cat /builddir/build/BUILD/python-pyhmmer-0.10.12-1.fc40.x86_64-pyproject-buildrequires
+ rm -rfv pyhmmer-0.10.12.dist-info/
removed 'pyhmmer-0.10.12.dist-info/top_level.txt'
removed 'pyhmmer-0.10.12.dist-info/METADATA'
removed 'pyhmmer-0.10.12.dist-info/COPYING'
removed directory 'pyhmmer-0.10.12.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/python-pyhmmer-0.10.12-1.fc40.buildreqs.nosrc.rpm
INFO: Going to install missing dynamic buildrequires
Updating and loading repositories:
 updates                                100% |  58.0 KiB/s |  21.6 KiB |  00m00s
 fedora                                 100% |  47.8 KiB/s |  21.4 KiB |  00m00s
 Copr repository                        100% |  33.5 KiB/s |   1.5 KiB |  00m00s
Repositories loaded.
Package "gcc-14.0.1-0.15.fc40.x86_64" is already installed.
Package "pyproject-rpm-macros-1.12.0-1.fc40.noarch" is already installed.
Package "python3-devel-3.12.2-2.fc40.x86_64" is already installed.
Package "python3-packaging-23.2-4.fc40.noarch" is already installed.
Package "python3-pip-23.3.2-1.fc40.noarch" is already installed.
Package "python3-setuptools-69.0.3-3.fc40.noarch" is already installed.
Package "python3-wheel-1:0.41.2-3.fc40.noarch" is already installed.

Nothing to do.
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1714003200
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.5sY4le
+ umask 022
+ cd /builddir/build/BUILD
+ cd pyhmmer-0.10.12
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(pip) >= 19'
+ echo 'python3dist(packaging)'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/pyhmmer-0.10.12/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ TMPDIR=/builddir/build/BUILD/pyhmmer-0.10.12/.pyproject-builddir
+ RPM_TOXENV=py312
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/pyhmmer-0.10.12/pyproject-wheeldir --output /builddir/build/BUILD/python-pyhmmer-0.10.12-1.fc40.x86_64-pyproject-buildrequires
Handling setuptools >=46.4 from build-system.requires
Requirement satisfied: setuptools >=46.4
   (installed: setuptools 69.0.3)
Handling cython ~=3.0 from build-system.requires
Requirement satisfied: cython ~=3.0
   (installed: cython 3.0.10)
Handling wheel from get_requires_for_build_wheel
Requirement satisfied: wheel
   (installed: wheel 0.41.2)
Handling setuptools >=46.4 from get_requires_for_build_wheel
Requirement satisfied: setuptools >=46.4
   (installed: setuptools 69.0.3)
Handling cython ~=3.0 from get_requires_for_build_wheel
Requirement satisfied: cython ~=3.0
   (installed: cython 3.0.10)
running dist_info
writing pyhmmer.egg-info/PKG-INFO
writing dependency_links to pyhmmer.egg-info/dependency_links.txt
writing requirements to pyhmmer.egg-info/requires.txt
writing top-level names to pyhmmer.egg-info/top_level.txt
reading manifest file 'pyhmmer.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no previously-included files matching '*.ai' found under directory 'vendor/hmmer'
warning: no previously-included files matching '*.pl' found under directory 'vendor'
no previously-included directories found matching 'vendor/easel/demotic'
no previously-included directories found matching 'vendor/easel/documentation'
no previously-included directories found matching 'vendor/easel/esl_msa_testfiles'
no previously-included directories found matching 'vendor/easel/miniapps'
no previously-included directories found matching 'vendor/easel/testsuite'
no previously-included directories found matching 'vendor/hmmer/autobuild'
no previously-included directories found matching 'vendor/hmmer/documentation'
no previously-included directories found matching 'vendor/hmmer/contrib'
no previously-included directories found matching 'vendor/hmmer/profmark'
no previously-included directories found matching 'vendor/hmmer/testsuite'
no previously-included directories found matching 'vendor/hmmer/test-speed'
no previously-included directories found matching 'vendor/hmmer/tutorial'
adding license file 'COPYING'
writing manifest file 'pyhmmer.egg-info/SOURCES.txt'
creating '/builddir/build/BUILD/pyhmmer-0.10.12/pyhmmer-0.10.12.dist-info'
Handling psutil ~=5.8 from hook generated metadata: Requires-Dist (pyhmmer)
Requirement satisfied: psutil ~=5.8
   (installed: psutil 5.9.8)
+ cat /builddir/build/BUILD/python-pyhmmer-0.10.12-1.fc40.x86_64-pyproject-buildrequires
+ rm -rfv pyhmmer-0.10.12.dist-info/
removed 'pyhmmer-0.10.12.dist-info/top_level.txt'
removed 'pyhmmer-0.10.12.dist-info/METADATA'
removed 'pyhmmer-0.10.12.dist-info/COPYING'
removed directory 'pyhmmer-0.10.12.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.9eX90m
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd pyhmmer-0.10.12
+ mkdir -p /builddir/build/BUILD/pyhmmer-0.10.12/.pyproject-builddir
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ TMPDIR=/builddir/build/BUILD/pyhmmer-0.10.12/.pyproject-builddir
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/pyhmmer-0.10.12/pyproject-wheeldir
Processing /builddir/build/BUILD/pyhmmer-0.10.12
  Preparing metadata (pyproject.toml): started
  Running command Preparing metadata (pyproject.toml)
  running dist_info
  creating /builddir/build/BUILD/pyhmmer-0.10.12/.pyproject-builddir/pip-modern-metadata-7qlujnd2/pyhmmer.egg-info
  writing /builddir/build/BUILD/pyhmmer-0.10.12/.pyproject-builddir/pip-modern-metadata-7qlujnd2/pyhmmer.egg-info/PKG-INFO
  writing dependency_links to /builddir/build/BUILD/pyhmmer-0.10.12/.pyproject-builddir/pip-modern-metadata-7qlujnd2/pyhmmer.egg-info/dependency_links.txt
  writing requirements to /builddir/build/BUILD/pyhmmer-0.10.12/.pyproject-builddir/pip-modern-metadata-7qlujnd2/pyhmmer.egg-info/requires.txt
  writing top-level names to /builddir/build/BUILD/pyhmmer-0.10.12/.pyproject-builddir/pip-modern-metadata-7qlujnd2/pyhmmer.egg-info/top_level.txt
  writing manifest file '/builddir/build/BUILD/pyhmmer-0.10.12/.pyproject-builddir/pip-modern-metadata-7qlujnd2/pyhmmer.egg-info/SOURCES.txt'
  reading manifest file '/builddir/build/BUILD/pyhmmer-0.10.12/.pyproject-builddir/pip-modern-metadata-7qlujnd2/pyhmmer.egg-info/SOURCES.txt'
  reading manifest template 'MANIFEST.in'
  warning: no previously-included files matching '*.ai' found under directory 'vendor/hmmer'
  warning: no previously-included files matching '*.pl' found under directory 'vendor'
  no previously-included directories found matching 'vendor/easel/demotic'
  no previously-included directories found matching 'vendor/easel/documentation'
  no previously-included directories found matching 'vendor/easel/esl_msa_testfiles'
  no previously-included directories found matching 'vendor/easel/miniapps'
  no previously-included directories found matching 'vendor/easel/testsuite'
  no previously-included directories found matching 'vendor/hmmer/autobuild'
  no previously-included directories found matching 'vendor/hmmer/documentation'
  no previously-included directories found matching 'vendor/hmmer/contrib'
  no previously-included directories found matching 'vendor/hmmer/profmark'
  no previously-included directories found matching 'vendor/hmmer/testsuite'
  no previously-included directories found matching 'vendor/hmmer/test-speed'
  no previously-included directories found matching 'vendor/hmmer/tutorial'
  adding license file 'COPYING'
  writing manifest file '/builddir/build/BUILD/pyhmmer-0.10.12/.pyproject-builddir/pip-modern-metadata-7qlujnd2/pyhmmer.egg-info/SOURCES.txt'
  creating '/builddir/build/BUILD/pyhmmer-0.10.12/.pyproject-builddir/pip-modern-metadata-7qlujnd2/pyhmmer-0.10.12.dist-info'
  Preparing metadata (pyproject.toml): finished with status 'done'
Building wheels for collected packages: pyhmmer
  Building wheel for pyhmmer (pyproject.toml): started
  Running command Building wheel for pyhmmer (pyproject.toml)
  running bdist_wheel
  running build
  running build_py
  creating build
  creating build/lib.linux-x86_64-cpython-312
  creating build/lib.linux-x86_64-cpython-312/pyhmmer
  copying pyhmmer/__init__.py -> build/lib.linux-x86_64-cpython-312/pyhmmer
  copying pyhmmer/hmmer.py -> build/lib.linux-x86_64-cpython-312/pyhmmer
  copying pyhmmer/utils.py -> build/lib.linux-x86_64-cpython-312/pyhmmer
  creating build/lib.linux-x86_64-cpython-312/pyhmmer/tests
  copying pyhmmer/tests/__init__.py -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests
  copying pyhmmer/tests/test_doctest.py -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests
  copying pyhmmer/tests/test_errors.py -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests
  copying pyhmmer/tests/test_hmmer.py -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests
  copying pyhmmer/tests/utils.py -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests
  creating build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_easel
  copying pyhmmer/tests/test_easel/__init__.py -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_easel
  copying pyhmmer/tests/test_easel/test_alphabet.py -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_easel
  copying pyhmmer/tests/test_easel/test_bitfield.py -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_easel
  copying pyhmmer/tests/test_easel/test_block.py -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_easel
  copying pyhmmer/tests/test_easel/test_gencode.py -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_easel
  copying pyhmmer/tests/test_easel/test_keyhash.py -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_easel
  copying pyhmmer/tests/test_easel/test_matrix.py -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_easel
  copying pyhmmer/tests/test_easel/test_msa.py -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_easel
  copying pyhmmer/tests/test_easel/test_msafile.py -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_easel
  copying pyhmmer/tests/test_easel/test_randomness.py -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_easel
  copying pyhmmer/tests/test_easel/test_sequence.py -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_easel
  copying pyhmmer/tests/test_easel/test_sequencefile.py -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_easel
  copying pyhmmer/tests/test_easel/test_ssi.py -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_easel
  copying pyhmmer/tests/test_easel/test_vector.py -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_easel
  creating build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_plan7
  copying pyhmmer/tests/test_plan7/__init__.py -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_plan7
  copying pyhmmer/tests/test_plan7/test_alignment.py -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_plan7
  copying pyhmmer/tests/test_plan7/test_background.py -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_plan7
  copying pyhmmer/tests/test_plan7/test_block.py -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_plan7
  copying pyhmmer/tests/test_plan7/test_builder.py -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_plan7
  copying pyhmmer/tests/test_plan7/test_hit.py -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_plan7
  copying pyhmmer/tests/test_plan7/test_hmm.py -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_plan7
  copying pyhmmer/tests/test_plan7/test_hmmfile.py -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_plan7
  copying pyhmmer/tests/test_plan7/test_optimizedprofile.py -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_plan7
  copying pyhmmer/tests/test_plan7/test_pipeline.py -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_plan7
  copying pyhmmer/tests/test_plan7/test_profile.py -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_plan7
  copying pyhmmer/tests/test_plan7/test_tophits.py -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_plan7
  copying pyhmmer/tests/test_plan7/test_tracealigner.py -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_plan7
  copying pyhmmer/tests/test_plan7/test_traces.py -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_plan7
  running egg_info
  writing pyhmmer.egg-info/PKG-INFO
  writing dependency_links to pyhmmer.egg-info/dependency_links.txt
  writing requirements to pyhmmer.egg-info/requires.txt
  writing top-level names to pyhmmer.egg-info/top_level.txt
  reading manifest file 'pyhmmer.egg-info/SOURCES.txt'
  reading manifest template 'MANIFEST.in'
  warning: no previously-included files matching '*.ai' found under directory 'vendor/hmmer'
  warning: no previously-included files matching '*.pl' found under directory 'vendor'
  no previously-included directories found matching 'vendor/easel/demotic'
  no previously-included directories found matching 'vendor/easel/documentation'
  no previously-included directories found matching 'vendor/easel/esl_msa_testfiles'
  no previously-included directories found matching 'vendor/easel/miniapps'
  no previously-included directories found matching 'vendor/easel/testsuite'
  no previously-included directories found matching 'vendor/hmmer/autobuild'
  no previously-included directories found matching 'vendor/hmmer/documentation'
  no previously-included directories found matching 'vendor/hmmer/contrib'
  no previously-included directories found matching 'vendor/hmmer/profmark'
  no previously-included directories found matching 'vendor/hmmer/testsuite'
  no previously-included directories found matching 'vendor/hmmer/test-speed'
  no previously-included directories found matching 'vendor/hmmer/tutorial'
  adding license file 'COPYING'
  writing manifest file 'pyhmmer.egg-info/SOURCES.txt'
  /usr/lib/python3.12/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'pyhmmer.fileobj' is absent from the `packages` configuration.
  !!

          ********************************************************************************
          ############################
          # Package would be ignored #
          ############################
          Python recognizes 'pyhmmer.fileobj' as an importable package[^1],
          but it is absent from setuptools' `packages` configuration.

          This leads to an ambiguous overall configuration. If you want to distribute this
          package, please make sure that 'pyhmmer.fileobj' is explicitly added
          to the `packages` configuration field.

          Alternatively, you can also rely on setuptools' discovery methods
          (for example by using `find_namespace_packages(...)`/`find_namespace:`
          instead of `find_packages(...)`/`find:`).

          You can read more about "package discovery" on setuptools documentation page:

          - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

          If you don't want 'pyhmmer.fileobj' to be distributed and are
          already explicitly excluding 'pyhmmer.fileobj' via
          `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
          you can try to use `exclude_package_data`, or `include-package-data=False` in
          combination with a more fine grained `package-data` configuration.

          You can read more about "package data files" on setuptools documentation page:

          - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


          [^1]: For Python, any directory (with suitable naming) can be imported,
                even if it does not contain any `.py` files.
                On the other hand, currently there is no concept of package data
                directory, all directories are treated like packages.
          ********************************************************************************

  !!
    check.warn(importable)
  /usr/lib/python3.12/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'pyhmmer.reexports' is absent from the `packages` configuration.
  !!

          ********************************************************************************
          ############################
          # Package would be ignored #
          ############################
          Python recognizes 'pyhmmer.reexports' as an importable package[^1],
          but it is absent from setuptools' `packages` configuration.

          This leads to an ambiguous overall configuration. If you want to distribute this
          package, please make sure that 'pyhmmer.reexports' is explicitly added
          to the `packages` configuration field.

          Alternatively, you can also rely on setuptools' discovery methods
          (for example by using `find_namespace_packages(...)`/`find_namespace:`
          instead of `find_packages(...)`/`find:`).

          You can read more about "package discovery" on setuptools documentation page:

          - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

          If you don't want 'pyhmmer.reexports' to be distributed and are
          already explicitly excluding 'pyhmmer.reexports' via
          `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
          you can try to use `exclude_package_data`, or `include-package-data=False` in
          combination with a more fine grained `package-data` configuration.

          You can read more about "package data files" on setuptools documentation page:

          - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


          [^1]: For Python, any directory (with suitable naming) can be imported,
                even if it does not contain any `.py` files.
                On the other hand, currently there is no concept of package data
                directory, all directories are treated like packages.
          ********************************************************************************

  !!
    check.warn(importable)
  /usr/lib/python3.12/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'pyhmmer.tests.data' is absent from the `packages` configuration.
  !!

          ********************************************************************************
          ############################
          # Package would be ignored #
          ############################
          Python recognizes 'pyhmmer.tests.data' as an importable package[^1],
          but it is absent from setuptools' `packages` configuration.

          This leads to an ambiguous overall configuration. If you want to distribute this
          package, please make sure that 'pyhmmer.tests.data' is explicitly added
          to the `packages` configuration field.

          Alternatively, you can also rely on setuptools' discovery methods
          (for example by using `find_namespace_packages(...)`/`find_namespace:`
          instead of `find_packages(...)`/`find:`).

          You can read more about "package discovery" on setuptools documentation page:

          - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

          If you don't want 'pyhmmer.tests.data' to be distributed and are
          already explicitly excluding 'pyhmmer.tests.data' via
          `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
          you can try to use `exclude_package_data`, or `include-package-data=False` in
          combination with a more fine grained `package-data` configuration.

          You can read more about "package data files" on setuptools documentation page:

          - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


          [^1]: For Python, any directory (with suitable naming) can be imported,
                even if it does not contain any `.py` files.
                On the other hand, currently there is no concept of package data
                directory, all directories are treated like packages.
          ********************************************************************************

  !!
    check.warn(importable)
  /usr/lib/python3.12/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'pyhmmer.tests.data.hmms' is absent from the `packages` configuration.
  !!

          ********************************************************************************
          ############################
          # Package would be ignored #
          ############################
          Python recognizes 'pyhmmer.tests.data.hmms' as an importable package[^1],
          but it is absent from setuptools' `packages` configuration.

          This leads to an ambiguous overall configuration. If you want to distribute this
          package, please make sure that 'pyhmmer.tests.data.hmms' is explicitly added
          to the `packages` configuration field.

          Alternatively, you can also rely on setuptools' discovery methods
          (for example by using `find_namespace_packages(...)`/`find_namespace:`
          instead of `find_packages(...)`/`find:`).

          You can read more about "package discovery" on setuptools documentation page:

          - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

          If you don't want 'pyhmmer.tests.data.hmms' to be distributed and are
          already explicitly excluding 'pyhmmer.tests.data.hmms' via
          `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
          you can try to use `exclude_package_data`, or `include-package-data=False` in
          combination with a more fine grained `package-data` configuration.

          You can read more about "package data files" on setuptools documentation page:

          - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


          [^1]: For Python, any directory (with suitable naming) can be imported,
                even if it does not contain any `.py` files.
                On the other hand, currently there is no concept of package data
                directory, all directories are treated like packages.
          ********************************************************************************

  !!
    check.warn(importable)
  /usr/lib/python3.12/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'pyhmmer.tests.data.hmms.bin' is absent from the `packages` configuration.
  !!

          ********************************************************************************
          ############################
          # Package would be ignored #
          ############################
          Python recognizes 'pyhmmer.tests.data.hmms.bin' as an importable package[^1],
          but it is absent from setuptools' `packages` configuration.

          This leads to an ambiguous overall configuration. If you want to distribute this
          package, please make sure that 'pyhmmer.tests.data.hmms.bin' is explicitly added
          to the `packages` configuration field.

          Alternatively, you can also rely on setuptools' discovery methods
          (for example by using `find_namespace_packages(...)`/`find_namespace:`
          instead of `find_packages(...)`/`find:`).

          You can read more about "package discovery" on setuptools documentation page:

          - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

          If you don't want 'pyhmmer.tests.data.hmms.bin' to be distributed and are
          already explicitly excluding 'pyhmmer.tests.data.hmms.bin' via
          `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
          you can try to use `exclude_package_data`, or `include-package-data=False` in
          combination with a more fine grained `package-data` configuration.

          You can read more about "package data files" on setuptools documentation page:

          - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


          [^1]: For Python, any directory (with suitable naming) can be imported,
                even if it does not contain any `.py` files.
                On the other hand, currently there is no concept of package data
                directory, all directories are treated like packages.
          ********************************************************************************

  !!
    check.warn(importable)
  /usr/lib/python3.12/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'pyhmmer.tests.data.hmms.db' is absent from the `packages` configuration.
  !!

          ********************************************************************************
          ############################
          # Package would be ignored #
          ############################
          Python recognizes 'pyhmmer.tests.data.hmms.db' as an importable package[^1],
          but it is absent from setuptools' `packages` configuration.

          This leads to an ambiguous overall configuration. If you want to distribute this
          package, please make sure that 'pyhmmer.tests.data.hmms.db' is explicitly added
          to the `packages` configuration field.

          Alternatively, you can also rely on setuptools' discovery methods
          (for example by using `find_namespace_packages(...)`/`find_namespace:`
          instead of `find_packages(...)`/`find:`).

          You can read more about "package discovery" on setuptools documentation page:

          - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

          If you don't want 'pyhmmer.tests.data.hmms.db' to be distributed and are
          already explicitly excluding 'pyhmmer.tests.data.hmms.db' via
          `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
          you can try to use `exclude_package_data`, or `include-package-data=False` in
          combination with a more fine grained `package-data` configuration.

          You can read more about "package data files" on setuptools documentation page:

          - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


          [^1]: For Python, any directory (with suitable naming) can be imported,
                even if it does not contain any `.py` files.
                On the other hand, currently there is no concept of package data
                directory, all directories are treated like packages.
          ********************************************************************************

  !!
    check.warn(importable)
  /usr/lib/python3.12/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'pyhmmer.tests.data.hmms.txt' is absent from the `packages` configuration.
  !!

          ********************************************************************************
          ############################
          # Package would be ignored #
          ############################
          Python recognizes 'pyhmmer.tests.data.hmms.txt' as an importable package[^1],
          but it is absent from setuptools' `packages` configuration.

          This leads to an ambiguous overall configuration. If you want to distribute this
          package, please make sure that 'pyhmmer.tests.data.hmms.txt' is explicitly added
          to the `packages` configuration field.

          Alternatively, you can also rely on setuptools' discovery methods
          (for example by using `find_namespace_packages(...)`/`find_namespace:`
          instead of `find_packages(...)`/`find:`).

          You can read more about "package discovery" on setuptools documentation page:

          - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

          If you don't want 'pyhmmer.tests.data.hmms.txt' to be distributed and are
          already explicitly excluding 'pyhmmer.tests.data.hmms.txt' via
          `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
          you can try to use `exclude_package_data`, or `include-package-data=False` in
          combination with a more fine grained `package-data` configuration.

          You can read more about "package data files" on setuptools documentation page:

          - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


          [^1]: For Python, any directory (with suitable naming) can be imported,
                even if it does not contain any `.py` files.
                On the other hand, currently there is no concept of package data
                directory, all directories are treated like packages.
          ********************************************************************************

  !!
    check.warn(importable)
  /usr/lib/python3.12/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'pyhmmer.tests.data.hmms.txt2' is absent from the `packages` configuration.
  !!

          ********************************************************************************
          ############################
          # Package would be ignored #
          ############################
          Python recognizes 'pyhmmer.tests.data.hmms.txt2' as an importable package[^1],
          but it is absent from setuptools' `packages` configuration.

          This leads to an ambiguous overall configuration. If you want to distribute this
          package, please make sure that 'pyhmmer.tests.data.hmms.txt2' is explicitly added
          to the `packages` configuration field.

          Alternatively, you can also rely on setuptools' discovery methods
          (for example by using `find_namespace_packages(...)`/`find_namespace:`
          instead of `find_packages(...)`/`find:`).

          You can read more about "package discovery" on setuptools documentation page:

          - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

          If you don't want 'pyhmmer.tests.data.hmms.txt2' to be distributed and are
          already explicitly excluding 'pyhmmer.tests.data.hmms.txt2' via
          `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
          you can try to use `exclude_package_data`, or `include-package-data=False` in
          combination with a more fine grained `package-data` configuration.

          You can read more about "package data files" on setuptools documentation page:

          - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


          [^1]: For Python, any directory (with suitable naming) can be imported,
                even if it does not contain any `.py` files.
                On the other hand, currently there is no concept of package data
                directory, all directories are treated like packages.
          ********************************************************************************

  !!
    check.warn(importable)
  /usr/lib/python3.12/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'pyhmmer.tests.data.jackhmmer' is absent from the `packages` configuration.
  !!

          ********************************************************************************
          ############################
          # Package would be ignored #
          ############################
          Python recognizes 'pyhmmer.tests.data.jackhmmer' as an importable package[^1],
          but it is absent from setuptools' `packages` configuration.

          This leads to an ambiguous overall configuration. If you want to distribute this
          package, please make sure that 'pyhmmer.tests.data.jackhmmer' is explicitly added
          to the `packages` configuration field.

          Alternatively, you can also rely on setuptools' discovery methods
          (for example by using `find_namespace_packages(...)`/`find_namespace:`
          instead of `find_packages(...)`/`find:`).

          You can read more about "package discovery" on setuptools documentation page:

          - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

          If you don't want 'pyhmmer.tests.data.jackhmmer' to be distributed and are
          already explicitly excluding 'pyhmmer.tests.data.jackhmmer' via
          `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
          you can try to use `exclude_package_data`, or `include-package-data=False` in
          combination with a more fine grained `package-data` configuration.

          You can read more about "package data files" on setuptools documentation page:

          - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


          [^1]: For Python, any directory (with suitable naming) can be imported,
                even if it does not contain any `.py` files.
                On the other hand, currently there is no concept of package data
                directory, all directories are treated like packages.
          ********************************************************************************

  !!
    check.warn(importable)
  /usr/lib/python3.12/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'pyhmmer.tests.data.msa' is absent from the `packages` configuration.
  !!

          ********************************************************************************
          ############################
          # Package would be ignored #
          ############################
          Python recognizes 'pyhmmer.tests.data.msa' as an importable package[^1],
          but it is absent from setuptools' `packages` configuration.

          This leads to an ambiguous overall configuration. If you want to distribute this
          package, please make sure that 'pyhmmer.tests.data.msa' is explicitly added
          to the `packages` configuration field.

          Alternatively, you can also rely on setuptools' discovery methods
          (for example by using `find_namespace_packages(...)`/`find_namespace:`
          instead of `find_packages(...)`/`find:`).

          You can read more about "package discovery" on setuptools documentation page:

          - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

          If you don't want 'pyhmmer.tests.data.msa' to be distributed and are
          already explicitly excluding 'pyhmmer.tests.data.msa' via
          `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
          you can try to use `exclude_package_data`, or `include-package-data=False` in
          combination with a more fine grained `package-data` configuration.

          You can read more about "package data files" on setuptools documentation page:

          - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


          [^1]: For Python, any directory (with suitable naming) can be imported,
                even if it does not contain any `.py` files.
                On the other hand, currently there is no concept of package data
                directory, all directories are treated like packages.
          ********************************************************************************

  !!
    check.warn(importable)
  /usr/lib/python3.12/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'pyhmmer.tests.data.seqs' is absent from the `packages` configuration.
  !!

          ********************************************************************************
          ############################
          # Package would be ignored #
          ############################
          Python recognizes 'pyhmmer.tests.data.seqs' as an importable package[^1],
          but it is absent from setuptools' `packages` configuration.

          This leads to an ambiguous overall configuration. If you want to distribute this
          package, please make sure that 'pyhmmer.tests.data.seqs' is explicitly added
          to the `packages` configuration field.

          Alternatively, you can also rely on setuptools' discovery methods
          (for example by using `find_namespace_packages(...)`/`find_namespace:`
          instead of `find_packages(...)`/`find:`).

          You can read more about "package discovery" on setuptools documentation page:

          - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

          If you don't want 'pyhmmer.tests.data.seqs' to be distributed and are
          already explicitly excluding 'pyhmmer.tests.data.seqs' via
          `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
          you can try to use `exclude_package_data`, or `include-package-data=False` in
          combination with a more fine grained `package-data` configuration.

          You can read more about "package data files" on setuptools documentation page:

          - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


          [^1]: For Python, any directory (with suitable naming) can be imported,
                even if it does not contain any `.py` files.
                On the other hand, currently there is no concept of package data
                directory, all directories are treated like packages.
          ********************************************************************************

  !!
    check.warn(importable)
  /usr/lib/python3.12/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'pyhmmer.tests.data.tables' is absent from the `packages` configuration.
  !!

          ********************************************************************************
          ############################
          # Package would be ignored #
          ############################
          Python recognizes 'pyhmmer.tests.data.tables' as an importable package[^1],
          but it is absent from setuptools' `packages` configuration.

          This leads to an ambiguous overall configuration. If you want to distribute this
          package, please make sure that 'pyhmmer.tests.data.tables' is explicitly added
          to the `packages` configuration field.

          Alternatively, you can also rely on setuptools' discovery methods
          (for example by using `find_namespace_packages(...)`/`find_namespace:`
          instead of `find_packages(...)`/`find:`).

          You can read more about "package discovery" on setuptools documentation page:

          - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

          If you don't want 'pyhmmer.tests.data.tables' to be distributed and are
          already explicitly excluding 'pyhmmer.tests.data.tables' via
          `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
          you can try to use `exclude_package_data`, or `include-package-data=False` in
          combination with a more fine grained `package-data` configuration.

          You can read more about "package data files" on setuptools documentation page:

          - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


          [^1]: For Python, any directory (with suitable naming) can be imported,
                even if it does not contain any `.py` files.
                On the other hand, currently there is no concept of package data
                directory, all directories are treated like packages.
          ********************************************************************************

  !!
    check.warn(importable)
  copying pyhmmer/_getid.pxi -> build/lib.linux-x86_64-cpython-312/pyhmmer
  copying pyhmmer/daemon.pxd -> build/lib.linux-x86_64-cpython-312/pyhmmer
  copying pyhmmer/daemon.pyi -> build/lib.linux-x86_64-cpython-312/pyhmmer
  copying pyhmmer/daemon.pyx -> build/lib.linux-x86_64-cpython-312/pyhmmer
  copying pyhmmer/easel.pxd -> build/lib.linux-x86_64-cpython-312/pyhmmer
  copying pyhmmer/easel.pyi -> build/lib.linux-x86_64-cpython-312/pyhmmer
  copying pyhmmer/easel.pyx -> build/lib.linux-x86_64-cpython-312/pyhmmer
  copying pyhmmer/errors.pyi -> build/lib.linux-x86_64-cpython-312/pyhmmer
  copying pyhmmer/errors.pyx -> build/lib.linux-x86_64-cpython-312/pyhmmer
  copying pyhmmer/exceptions.pxi -> build/lib.linux-x86_64-cpython-312/pyhmmer
  copying pyhmmer/plan7.pxd -> build/lib.linux-x86_64-cpython-312/pyhmmer
  copying pyhmmer/plan7.pyi -> build/lib.linux-x86_64-cpython-312/pyhmmer
  copying pyhmmer/plan7.pyx -> build/lib.linux-x86_64-cpython-312/pyhmmer
  copying pyhmmer/py.typed -> build/lib.linux-x86_64-cpython-312/pyhmmer
  creating build/lib.linux-x86_64-cpython-312/pyhmmer/fileobj
  copying pyhmmer/fileobj/__init__.pxd -> build/lib.linux-x86_64-cpython-312/pyhmmer/fileobj
  copying pyhmmer/fileobj/bsd.h -> build/lib.linux-x86_64-cpython-312/pyhmmer/fileobj
  copying pyhmmer/fileobj/bsd.pxd -> build/lib.linux-x86_64-cpython-312/pyhmmer/fileobj
  copying pyhmmer/fileobj/linux.h -> build/lib.linux-x86_64-cpython-312/pyhmmer/fileobj
  copying pyhmmer/fileobj/linux.pxd -> build/lib.linux-x86_64-cpython-312/pyhmmer/fileobj
  copying pyhmmer/fileobj/util.h -> build/lib.linux-x86_64-cpython-312/pyhmmer/fileobj
  creating build/lib.linux-x86_64-cpython-312/pyhmmer/reexports
  copying pyhmmer/reexports/__init__.pxd -> build/lib.linux-x86_64-cpython-312/pyhmmer/reexports
  copying pyhmmer/reexports/esl_sqio_ascii.h -> build/lib.linux-x86_64-cpython-312/pyhmmer/reexports
  copying pyhmmer/reexports/esl_sqio_ascii.pxd -> build/lib.linux-x86_64-cpython-312/pyhmmer/reexports
  copying pyhmmer/reexports/p7_hmmfile.h -> build/lib.linux-x86_64-cpython-312/pyhmmer/reexports
  copying pyhmmer/reexports/p7_hmmfile.pxd -> build/lib.linux-x86_64-cpython-312/pyhmmer/reexports
  copying pyhmmer/reexports/p7_tophits.h -> build/lib.linux-x86_64-cpython-312/pyhmmer/reexports
  copying pyhmmer/reexports/p7_tophits.pxd -> build/lib.linux-x86_64-cpython-312/pyhmmer/reexports
  copying pyhmmer/tests/requirements.txt -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests
  creating build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data
  copying pyhmmer/tests/data/README.md -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data
  creating build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms
  copying pyhmmer/tests/data/hmms/make.sh -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms
  creating build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/bin
  copying pyhmmer/tests/data/hmms/bin/PF02826.h3m -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/bin
  copying pyhmmer/tests/data/hmms/bin/PKSI-AT.h3m -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/bin
  copying pyhmmer/tests/data/hmms/bin/RF00001.h3m -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/bin
  copying pyhmmer/tests/data/hmms/bin/RREFam.h3m -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/bin
  copying pyhmmer/tests/data/hmms/bin/Thioesterase.h3m -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/bin
  creating build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/db
  copying pyhmmer/tests/data/hmms/db/PF02826.hmm -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/db
  copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3f -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/db
  copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3i -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/db
  copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3m -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/db
  copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3p -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/db
  copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/db
  copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3f -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/db
  copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3i -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/db
  copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3m -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/db
  copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3p -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/db
  copying pyhmmer/tests/data/hmms/db/RREFam.hmm -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/db
  copying pyhmmer/tests/data/hmms/db/RREFam.hmm.h3f -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/db
  copying pyhmmer/tests/data/hmms/db/RREFam.hmm.h3i -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/db
  copying pyhmmer/tests/data/hmms/db/RREFam.hmm.h3m -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/db
  copying pyhmmer/tests/data/hmms/db/RREFam.hmm.h3p -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/db
  copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/db
  copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3f -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/db
  copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3i -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/db
  copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3m -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/db
  copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3p -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/db
  creating build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/txt
  copying pyhmmer/tests/data/hmms/txt/KR.hmm -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/txt
  copying pyhmmer/tests/data/hmms/txt/LuxC.hmm -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/txt
  copying pyhmmer/tests/data/hmms/txt/PF02826.hmm -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/txt
  copying pyhmmer/tests/data/hmms/txt/PKSI-AT.hmm -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/txt
  copying pyhmmer/tests/data/hmms/txt/RF00001.hmm -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/txt
  copying pyhmmer/tests/data/hmms/txt/RREFam.hmm -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/txt
  copying pyhmmer/tests/data/hmms/txt/Thioesterase.hmm -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/txt
  copying pyhmmer/tests/data/hmms/txt/bmyD.hmm -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/txt
  copying pyhmmer/tests/data/hmms/txt/laccase.hmm -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/txt
  creating build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/txt2
  copying pyhmmer/tests/data/hmms/txt2/RREFam.hmm2 -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/txt2
  copying pyhmmer/tests/data/hmms/txt2/Thioesterase.hmm2 -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/txt2
  creating build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/jackhmmer
  copying pyhmmer/tests/data/jackhmmer/KR-1.sto -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/jackhmmer
  copying pyhmmer/tests/data/jackhmmer/KR-1_bkup.sto -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/jackhmmer
  copying pyhmmer/tests/data/jackhmmer/KR-2.sto -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/jackhmmer
  copying pyhmmer/tests/data/jackhmmer/KR-3.sto -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/jackhmmer
  copying pyhmmer/tests/data/jackhmmer/KR-4.sto -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/jackhmmer
  copying pyhmmer/tests/data/jackhmmer/KR-5.sto -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/jackhmmer
  copying pyhmmer/tests/data/jackhmmer/KR-6.sto -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/jackhmmer
  copying pyhmmer/tests/data/jackhmmer/p12748-1.sto -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/jackhmmer
  copying pyhmmer/tests/data/jackhmmer/p12748-2.sto -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/jackhmmer
  copying pyhmmer/tests/data/jackhmmer/p12748-3.sto -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/jackhmmer
  creating build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/msa
  copying pyhmmer/tests/data/msa/LuxC.faa -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/msa
  copying pyhmmer/tests/data/msa/LuxC.hmmalign.sto -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/msa
  copying pyhmmer/tests/data/msa/LuxC.sto -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/msa
  copying pyhmmer/tests/data/msa/laccase.clw -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/msa
  creating build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/seqs
  copying pyhmmer/tests/data/seqs/1390.SAMEA104415756.OFHT01000022.fna -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/seqs
  copying pyhmmer/tests/data/seqs/1390.SAMEA104415756.OFHT01000024.fna -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/seqs
  copying pyhmmer/tests/data/seqs/938293.PRJEB85.HG003687.faa -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/seqs
  copying pyhmmer/tests/data/seqs/BGC0001090.gbk -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/seqs
  copying pyhmmer/tests/data/seqs/CP040672.1.genes_100.fna -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/seqs
  copying pyhmmer/tests/data/seqs/LuxC.faa -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/seqs
  copying pyhmmer/tests/data/seqs/PKSI.faa -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/seqs
  copying pyhmmer/tests/data/seqs/bmyD.fna -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/seqs
  creating build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/tables
  copying pyhmmer/tests/data/tables/A0A089QRB9.domtbl -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/tables
  copying pyhmmer/tests/data/tables/PF02826.domtbl -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/tables
  copying pyhmmer/tests/data/tables/PF02826.tbl -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/tables
  copying pyhmmer/tests/data/tables/RREFam.domtbl -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/tables
  copying pyhmmer/tests/data/tables/RREFam.scan.tbl -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/tables
  copying pyhmmer/tests/data/tables/RREFam.tbl -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/tables
  copying pyhmmer/tests/data/tables/bmyD1.tbl -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/tables
  copying pyhmmer/tests/data/tables/bmyD2.tbl -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/tables
  copying pyhmmer/tests/data/tables/bmyD3.tbl -> build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/tables
  running build_clib
  creating build/temp.linux-x86_64-cpython-312
  generating "divsufsort.h" for divsufsort library
  copying vendor/hmmer/libdivsufsort/divsufsort.h.in -> build/temp.linux-x86_64-cpython-312/divsufsort.h
  generating "esl_config.h" for easel library
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -c build/temp.linux-x86_64-cpython-312/have_SSE4.c -o build/temp.linux-x86_64-cpython-312/have_SSE4.o
  gcc -msse4.1 build/temp.linux-x86_64-cpython-312/have_SSE4.o -o build/temp.linux-x86_64-cpython-312/have_SSE4
  checking whether compiler can build SSE4 code... yes, but cannot run code
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-312/have_stdio_h.c -o build/temp.linux-x86_64-cpython-312/have_stdio_h.o
  checking whether <stdio.h> can be included... yes
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-312/have_stdlib_h.c -o build/temp.linux-x86_64-cpython-312/have_stdlib_h.o
  checking whether <stdlib.h> can be included... yes
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-312/have_string_h.c -o build/temp.linux-x86_64-cpython-312/have_string_h.o
  checking whether <string.h> can be included... yes
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-312/have_inttypes_h.c -o build/temp.linux-x86_64-cpython-312/have_inttypes_h.o
  checking whether <inttypes.h> can be included... yes
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-312/have_stdint_h.c -o build/temp.linux-x86_64-cpython-312/have_stdint_h.o
  checking whether <stdint.h> can be included... yes
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-312/have_strings_h.c -o build/temp.linux-x86_64-cpython-312/have_strings_h.o
  checking whether <strings.h> can be included... yes
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-312/have_sys_stat_h.c -o build/temp.linux-x86_64-cpython-312/have_sys_stat_h.o
  checking whether <sys/stat.h> can be included... yes
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-312/have_sys_types_h.c -o build/temp.linux-x86_64-cpython-312/have_sys_types_h.o
  checking whether <sys/types.h> can be included... yes
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-312/have_unistd_h.c -o build/temp.linux-x86_64-cpython-312/have_unistd_h.o
  checking whether <unistd.h> can be included... yes
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-312/have_endian_h.c -o build/temp.linux-x86_64-cpython-312/have_endian_h.o
  checking whether <endian.h> can be included... yes
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-312/have_netinet_in_h.c -o build/temp.linux-x86_64-cpython-312/have_netinet_in_h.o
  checking whether <netinet/in.h> can be included... yes
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-312/have_sys_param_h.c -o build/temp.linux-x86_64-cpython-312/have_sys_param_h.o
  checking whether <sys/param.h> can be included... yes
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-312/have_sys_sysctl_h.c -o build/temp.linux-x86_64-cpython-312/have_sys_sysctl_h.o
  build/temp.linux-x86_64-cpython-312/have_sys_sysctl_h.c:1:10: fatal error: sys/sysctl.h: No such file or directory
      1 | #include "sys/sysctl.h"
        |          ^~~~~~~~~~~~~~
  compilation terminated.
  checking whether <sys/sysctl.h> can be included... no
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-312/have_aligned_alloc.c -o build/temp.linux-x86_64-cpython-312/have_aligned_alloc.o -Wno-all
  cc1: error: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Werror=format-security]
  build/temp.linux-x86_64-cpython-312/have_aligned_alloc.c: warning: -Wno-implicit-int detected - is this intentional ?
  build/temp.linux-x86_64-cpython-312/have_aligned_alloc.c: warning: -Wno-implicit-function-declaration detected - is this intentional ?
  build/temp.linux-x86_64-cpython-312/have_aligned_alloc.c: In function ‘main’:
  build/temp.linux-x86_64-cpython-312/have_aligned_alloc.c:2:14: warning: ignoring return value of ‘aligned_alloc’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
      2 | int main() { aligned_alloc(0, 0); return 0; }
        |              ^~~~~~~~~~~~~~~~~~~
  cc1: some warnings being treated as errors
  checking whether function 'aligned_alloc' is available... no
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-312/have_erfc.c -o build/temp.linux-x86_64-cpython-312/have_erfc.o -Wno-all
  cc1: error: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Werror=format-security]
  build/temp.linux-x86_64-cpython-312/have_erfc.c: warning: -Wno-implicit-int detected - is this intentional ?
  build/temp.linux-x86_64-cpython-312/have_erfc.c: warning: -Wno-implicit-function-declaration detected - is this intentional ?
  cc1: some warnings being treated as errors
  checking whether function 'erfc' is available... no
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-312/have_getpid.c -o build/temp.linux-x86_64-cpython-312/have_getpid.o -Wno-all
  cc1: error: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Werror=format-security]
  build/temp.linux-x86_64-cpython-312/have_getpid.c: warning: -Wno-implicit-int detected - is this intentional ?
  build/temp.linux-x86_64-cpython-312/have_getpid.c: warning: -Wno-implicit-function-declaration detected - is this intentional ?
  cc1: some warnings being treated as errors
  checking whether function 'getpid' is available... no
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-312/have__mm_malloc.c -o build/temp.linux-x86_64-cpython-312/have__mm_malloc.o -Wno-all
  cc1: error: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Werror=format-security]
  build/temp.linux-x86_64-cpython-312/have__mm_malloc.c: warning: -Wno-implicit-int detected - is this intentional ?
  build/temp.linux-x86_64-cpython-312/have__mm_malloc.c: warning: -Wno-implicit-function-declaration detected - is this intentional ?
  cc1: some warnings being treated as errors
  checking whether function '_mm_malloc' is available... no
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-312/have_popen.c -o build/temp.linux-x86_64-cpython-312/have_popen.o -Wno-all
  cc1: error: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Werror=format-security]
  build/temp.linux-x86_64-cpython-312/have_popen.c: warning: -Wno-implicit-int detected - is this intentional ?
  build/temp.linux-x86_64-cpython-312/have_popen.c: warning: -Wno-implicit-function-declaration detected - is this intentional ?
  build/temp.linux-x86_64-cpython-312/have_popen.c: In function ‘main’:
  build/temp.linux-x86_64-cpython-312/have_popen.c:2:14: warning: ignoring return value of ‘popen’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
      2 | int main() { popen(NULL, NULL); return 0; }
        |              ^~~~~~~~~~~~~~~~~
  cc1: some warnings being treated as errors
  checking whether function 'popen' is available... no
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-312/have_posix_memalign.c -o build/temp.linux-x86_64-cpython-312/have_posix_memalign.o -Wno-all
  cc1: error: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Werror=format-security]
  build/temp.linux-x86_64-cpython-312/have_posix_memalign.c: warning: -Wno-implicit-int detected - is this intentional ?
  build/temp.linux-x86_64-cpython-312/have_posix_memalign.c: warning: -Wno-implicit-function-declaration detected - is this intentional ?
  build/temp.linux-x86_64-cpython-312/have_posix_memalign.c: In function ‘main’:
  build/temp.linux-x86_64-cpython-312/have_posix_memalign.c:2:14: warning: ignoring return value of ‘posix_memalign’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
      2 | int main() { posix_memalign(NULL, 0, 0); return 0; }
        |              ^~~~~~~~~~~~~~~~~~~~~~~~~~
  cc1: some warnings being treated as errors
  checking whether function 'posix_memalign' is available... no
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-312/have_strcasecmp.c -o build/temp.linux-x86_64-cpython-312/have_strcasecmp.o -Wno-all
  cc1: error: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Werror=format-security]
  build/temp.linux-x86_64-cpython-312/have_strcasecmp.c: warning: -Wno-implicit-int detected - is this intentional ?
  build/temp.linux-x86_64-cpython-312/have_strcasecmp.c: warning: -Wno-implicit-function-declaration detected - is this intentional ?
  cc1: some warnings being treated as errors
  checking whether function 'strcasecmp' is available... no
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-312/have_strsep.c -o build/temp.linux-x86_64-cpython-312/have_strsep.o -Wno-all
  cc1: error: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Werror=format-security]
  build/temp.linux-x86_64-cpython-312/have_strsep.c: warning: -Wno-implicit-int detected - is this intentional ?
  build/temp.linux-x86_64-cpython-312/have_strsep.c: warning: -Wno-implicit-function-declaration detected - is this intentional ?
  cc1: some warnings being treated as errors
  checking whether function 'strsep' is available... no
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-312/have_sysconf.c -o build/temp.linux-x86_64-cpython-312/have_sysconf.o -Wno-all
  cc1: error: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Werror=format-security]
  build/temp.linux-x86_64-cpython-312/have_sysconf.c: warning: -Wno-implicit-int detected - is this intentional ?
  build/temp.linux-x86_64-cpython-312/have_sysconf.c: warning: -Wno-implicit-function-declaration detected - is this intentional ?
  cc1: some warnings being treated as errors
  checking whether function 'sysconf' is available... no
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-312/have_sysctl.c -o build/temp.linux-x86_64-cpython-312/have_sysctl.o -Wno-all
  cc1: error: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Werror=format-security]
  build/temp.linux-x86_64-cpython-312/have_sysctl.c: warning: -Wno-implicit-int detected - is this intentional ?
  build/temp.linux-x86_64-cpython-312/have_sysctl.c: warning: -Wno-implicit-function-declaration detected - is this intentional ?
  build/temp.linux-x86_64-cpython-312/have_sysctl.c:2:10: fatal error: sys/sysctl.h: No such file or directory
      2 | #include <sys/sysctl.h>
        |          ^~~~~~~~~~~~~~
  compilation terminated.
  cc1: some warnings being treated as errors
  checking whether function 'sysctl' is available... no
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-312/have_times.c -o build/temp.linux-x86_64-cpython-312/have_times.o -Wno-all
  cc1: error: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Werror=format-security]
  build/temp.linux-x86_64-cpython-312/have_times.c: warning: -Wno-implicit-int detected - is this intentional ?
  build/temp.linux-x86_64-cpython-312/have_times.c: warning: -Wno-implicit-function-declaration detected - is this intentional ?
  cc1: some warnings being treated as errors
  checking whether function 'times' is available... no
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-312/have_fseeko.c -o build/temp.linux-x86_64-cpython-312/have_fseeko.o -Wno-all
  cc1: error: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Werror=format-security]
  build/temp.linux-x86_64-cpython-312/have_fseeko.c: warning: -Wno-implicit-int detected - is this intentional ?
  build/temp.linux-x86_64-cpython-312/have_fseeko.c: warning: -Wno-implicit-function-declaration detected - is this intentional ?
  cc1: some warnings being treated as errors
  checking whether function 'fseeko' is available... no
  generating "p7_config.h" for hmmer library
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -c build/temp.linux-x86_64-cpython-312/have_SSE4.c -o build/temp.linux-x86_64-cpython-312/have_SSE4.o
  gcc -msse4.1 build/temp.linux-x86_64-cpython-312/have_SSE4.o -o build/temp.linux-x86_64-cpython-312/have_SSE4
  checking whether compiler can build SSE4 code... yes, but cannot run code
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-312/have_endian_h.c -o build/temp.linux-x86_64-cpython-312/have_endian_h.o
  checking whether <endian.h> can be included... yes
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-312/have_inttypes_h.c -o build/temp.linux-x86_64-cpython-312/have_inttypes_h.o
  checking whether <inttypes.h> can be included... yes
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-312/have_stdint_h.c -o build/temp.linux-x86_64-cpython-312/have_stdint_h.o
  checking whether <stdint.h> can be included... yes
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-312/have_unistd_h.c -o build/temp.linux-x86_64-cpython-312/have_unistd_h.o
  checking whether <unistd.h> can be included... yes
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-312/have_sys_types_h.c -o build/temp.linux-x86_64-cpython-312/have_sys_types_h.o
  checking whether <sys/types.h> can be included... yes
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-312/have_netinet_in_h.c -o build/temp.linux-x86_64-cpython-312/have_netinet_in_h.o
  checking whether <netinet/in.h> can be included... yes
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-312/have_sys_param_h.c -o build/temp.linux-x86_64-cpython-312/have_sys_param_h.o
  checking whether <sys/param.h> can be included... yes
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-312/have_sys_sysctl_h.c -o build/temp.linux-x86_64-cpython-312/have_sys_sysctl_h.o
  build/temp.linux-x86_64-cpython-312/have_sys_sysctl_h.c:1:10: fatal error: sys/sysctl.h: No such file or directory
      1 | #include "sys/sysctl.h"
        |          ^~~~~~~~~~~~~~
  compilation terminated.
  checking whether <sys/sysctl.h> can be included... no
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-312/have_mkstemp.c -o build/temp.linux-x86_64-cpython-312/have_mkstemp.o -Wno-all
  cc1: error: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Werror=format-security]
  build/temp.linux-x86_64-cpython-312/have_mkstemp.c: warning: -Wno-implicit-int detected - is this intentional ?
  build/temp.linux-x86_64-cpython-312/have_mkstemp.c: warning: -Wno-implicit-function-declaration detected - is this intentional ?
  build/temp.linux-x86_64-cpython-312/have_mkstemp.c: In function ‘main’:
  build/temp.linux-x86_64-cpython-312/have_mkstemp.c:2:14: warning: ignoring return value of ‘mkstemp’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
      2 | int main() { mkstemp(NULL); return 0; }
        |              ^~~~~~~~~~~~~
  cc1: some warnings being treated as errors
  checking whether function 'mkstemp' is available... no
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-312/have_popen.c -o build/temp.linux-x86_64-cpython-312/have_popen.o -Wno-all
  cc1: error: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Werror=format-security]
  build/temp.linux-x86_64-cpython-312/have_popen.c: warning: -Wno-implicit-int detected - is this intentional ?
  build/temp.linux-x86_64-cpython-312/have_popen.c: warning: -Wno-implicit-function-declaration detected - is this intentional ?
  build/temp.linux-x86_64-cpython-312/have_popen.c: In function ‘main’:
  build/temp.linux-x86_64-cpython-312/have_popen.c:2:14: warning: ignoring return value of ‘popen’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
      2 | int main() { popen(NULL, NULL); return 0; }
        |              ^~~~~~~~~~~~~~~~~
  cc1: some warnings being treated as errors
  checking whether function 'popen' is available... no
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-312/have_putenv.c -o build/temp.linux-x86_64-cpython-312/have_putenv.o -Wno-all
  cc1: error: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Werror=format-security]
  build/temp.linux-x86_64-cpython-312/have_putenv.c: warning: -Wno-implicit-int detected - is this intentional ?
  build/temp.linux-x86_64-cpython-312/have_putenv.c: warning: -Wno-implicit-function-declaration detected - is this intentional ?
  cc1: some warnings being treated as errors
  checking whether function 'putenv' is available... no
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-312/have_strcasecmp.c -o build/temp.linux-x86_64-cpython-312/have_strcasecmp.o -Wno-all
  cc1: error: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Werror=format-security]
  build/temp.linux-x86_64-cpython-312/have_strcasecmp.c: warning: -Wno-implicit-int detected - is this intentional ?
  build/temp.linux-x86_64-cpython-312/have_strcasecmp.c: warning: -Wno-implicit-function-declaration detected - is this intentional ?
  cc1: some warnings being treated as errors
  checking whether function 'strcasecmp' is available... no
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-312/have_strsep.c -o build/temp.linux-x86_64-cpython-312/have_strsep.o -Wno-all
  cc1: error: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Werror=format-security]
  build/temp.linux-x86_64-cpython-312/have_strsep.c: warning: -Wno-implicit-int detected - is this intentional ?
  build/temp.linux-x86_64-cpython-312/have_strsep.c: warning: -Wno-implicit-function-declaration detected - is this intentional ?
  cc1: some warnings being treated as errors
  checking whether function 'strsep' is available... no
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-312/have_times.c -o build/temp.linux-x86_64-cpython-312/have_times.o -Wno-all
  cc1: error: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Werror=format-security]
  build/temp.linux-x86_64-cpython-312/have_times.c: warning: -Wno-implicit-int detected - is this intentional ?
  build/temp.linux-x86_64-cpython-312/have_times.c: warning: -Wno-implicit-function-declaration detected - is this intentional ?
  cc1: some warnings being treated as errors
  checking whether function 'times' is available... no
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-312/have_getpid.c -o build/temp.linux-x86_64-cpython-312/have_getpid.o -Wno-all
  cc1: error: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Werror=format-security]
  build/temp.linux-x86_64-cpython-312/have_getpid.c: warning: -Wno-implicit-int detected - is this intentional ?
  build/temp.linux-x86_64-cpython-312/have_getpid.c: warning: -Wno-implicit-function-declaration detected - is this intentional ?
  cc1: some warnings being treated as errors
  checking whether function 'getpid' is available... no
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-312/have_sysctl.c -o build/temp.linux-x86_64-cpython-312/have_sysctl.o -Wno-all
  cc1: error: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Werror=format-security]
  build/temp.linux-x86_64-cpython-312/have_sysctl.c: warning: -Wno-implicit-int detected - is this intentional ?
  build/temp.linux-x86_64-cpython-312/have_sysctl.c: warning: -Wno-implicit-function-declaration detected - is this intentional ?
  build/temp.linux-x86_64-cpython-312/have_sysctl.c:2:10: fatal error: sys/sysctl.h: No such file or directory
      2 | #include <sys/sysctl.h>
        |          ^~~~~~~~~~~~~~
  compilation terminated.
  cc1: some warnings being treated as errors
  checking whether function 'sysctl' is available... no
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-312/have_sysconf.c -o build/temp.linux-x86_64-cpython-312/have_sysconf.o -Wno-all
  cc1: error: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Werror=format-security]
  build/temp.linux-x86_64-cpython-312/have_sysconf.c: warning: -Wno-implicit-int detected - is this intentional ?
  build/temp.linux-x86_64-cpython-312/have_sysconf.c: warning: -Wno-implicit-function-declaration detected - is this intentional ?
  cc1: some warnings being treated as errors
  checking whether function 'sysconf' is available... no
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-312/have_getcwd.c -o build/temp.linux-x86_64-cpython-312/have_getcwd.o -Wno-all
  cc1: error: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Werror=format-security]
  build/temp.linux-x86_64-cpython-312/have_getcwd.c: warning: -Wno-implicit-int detected - is this intentional ?
  build/temp.linux-x86_64-cpython-312/have_getcwd.c: warning: -Wno-implicit-function-declaration detected - is this intentional ?
  build/temp.linux-x86_64-cpython-312/have_getcwd.c: In function ‘main’:
  build/temp.linux-x86_64-cpython-312/have_getcwd.c:2:14: warning: ignoring return value of ‘getcwd’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
      2 | int main() { getcwd(NULL, 0); return 0; }
        |              ^~~~~~~~~~~~~~~
  cc1: some warnings being treated as errors
  checking whether function 'getcwd' is available... no
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-312/have_chmod.c -o build/temp.linux-x86_64-cpython-312/have_chmod.o -Wno-all
  cc1: error: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Werror=format-security]
  build/temp.linux-x86_64-cpython-312/have_chmod.c: warning: -Wno-implicit-int detected - is this intentional ?
  build/temp.linux-x86_64-cpython-312/have_chmod.c: warning: -Wno-implicit-function-declaration detected - is this intentional ?
  cc1: some warnings being treated as errors
  checking whether function 'chmod' is available... no
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-312/have_stat.c -o build/temp.linux-x86_64-cpython-312/have_stat.o -Wno-all
  cc1: error: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Werror=format-security]
  build/temp.linux-x86_64-cpython-312/have_stat.c: warning: -Wno-implicit-int detected - is this intentional ?
  build/temp.linux-x86_64-cpython-312/have_stat.c: warning: -Wno-implicit-function-declaration detected - is this intentional ?
  cc1: some warnings being treated as errors
  checking whether function 'stat' is available... no
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-312/have_fstat.c -o build/temp.linux-x86_64-cpython-312/have_fstat.o -Wno-all
  cc1: error: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Werror=format-security]
  build/temp.linux-x86_64-cpython-312/have_fstat.c: warning: -Wno-implicit-int detected - is this intentional ?
  build/temp.linux-x86_64-cpython-312/have_fstat.c: warning: -Wno-implicit-function-declaration detected - is this intentional ?
  cc1: some warnings being treated as errors
  checking whether function 'fstat' is available... no
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c build/temp.linux-x86_64-cpython-312/have_erfc.c -o build/temp.linux-x86_64-cpython-312/have_erfc.o -Wno-all
  cc1: error: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Werror=format-security]
  build/temp.linux-x86_64-cpython-312/have_erfc.c: warning: -Wno-implicit-int detected - is this intentional ?
  build/temp.linux-x86_64-cpython-312/have_erfc.c: warning: -Wno-implicit-function-declaration detected - is this intentional ?
  cc1: some warnings being treated as errors
  checking whether function 'erfc' is available... no
  generating build/temp.linux-x86_64-cpython-312/libdivsufsort.a from vendor/hmmer/libdivsufsort/divsufsort.c
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/libdivsufsort/divsufsort.o from vendor/hmmer/libdivsufsort/divsufsort.c
  creating build/temp.linux-x86_64-cpython-312/vendor
  creating build/temp.linux-x86_64-cpython-312/vendor/hmmer
  creating build/temp.linux-x86_64-cpython-312/vendor/hmmer/libdivsufsort
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/libdivsufsort/divsufsort.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/libdivsufsort/divsufsort.o
  ar rcs build/temp.linux-x86_64-cpython-312/libdivsufsort.a build/temp.linux-x86_64-cpython-312/vendor/hmmer/libdivsufsort/divsufsort.o
  generating build/temp.linux-x86_64-cpython-312/libeasel.a from vendor/easel/easel.c, vendor/easel/esl_alloc.c, vendor/easel/esl_alphabet.c, vendor/easel/esl_arr2.c, vendor/easel/esl_arr3.c, vendor/easel/esl_avx.c, vendor/easel/esl_avx512.c, vendor/easel/esl_bitfield.c, vendor/easel/esl_buffer.c, vendor/easel/esl_cluster.c, vendor/easel/esl_composition.c, vendor/easel/esl_cpu.c, vendor/easel/esl_dirichlet.c, vendor/easel/esl_distance.c, vendor/easel/esl_dmatrix.c, vendor/easel/esl_dsqdata.c, vendor/easel/esl_exponential.c, vendor/easel/esl_fileparser.c, vendor/easel/esl_gamma.c, vendor/easel/esl_gencode.c, vendor/easel/esl_getopts.c, vendor/easel/esl_gev.c, vendor/easel/esl_graph.c, vendor/easel/esl_gumbel.c, vendor/easel/esl_heap.c, vendor/easel/esl_histogram.c, vendor/easel/esl_hmm.c, vendor/easel/esl_huffman.c, vendor/easel/esl_hyperexp.c, vendor/easel/esl_iset.c, vendor/easel/esl_json.c, vendor/easel/esl_keyhash.c, vendor/easel/esl_lognormal.c, vendor/easel/esl_matrixops.c, vendor/easel/esl_mem.c, vendor/easel/esl_minimizer.c, vendor/easel/esl_mixdchlet.c, vendor/easel/esl_mixgev.c, vendor/easel/esl_mpi.c, vendor/easel/esl_msa.c, vendor/easel/esl_msacluster.c, vendor/easel/esl_msafile.c, vendor/easel/esl_msafile2.c, vendor/easel/esl_msafile_a2m.c, vendor/easel/esl_msafile_afa.c, vendor/easel/esl_msafile_clustal.c, vendor/easel/esl_msafile_phylip.c, vendor/easel/esl_msafile_psiblast.c, vendor/easel/esl_msafile_selex.c, vendor/easel/esl_msafile_stockholm.c, vendor/easel/esl_msashuffle.c, vendor/easel/esl_msaweight.c, vendor/easel/esl_neon.c, vendor/easel/esl_normal.c, vendor/easel/esl_paml.c, vendor/easel/esl_quicksort.c, vendor/easel/esl_rand64.c, vendor/easel/esl_random.c, vendor/easel/esl_randomseq.c, vendor/easel/esl_ratematrix.c, vendor/easel/esl_recorder.c, vendor/easel/esl_red_black.c, vendor/easel/esl_regexp.c, vendor/easel/esl_rootfinder.c, vendor/easel/esl_scorematrix.c, vendor/easel/esl_sq.c, vendor/easel/esl_sqio.c, vendor/easel/esl_sqio_ascii.c, vendor/easel/esl_sqio_ncbi.c, vendor/easel/esl_sse.c, vendor/easel/esl_ssi.c, vendor/easel/esl_stack.c, vendor/easel/esl_stats.c, vendor/easel/esl_stopwatch.c, vendor/easel/esl_stretchexp.c, vendor/easel/esl_subcmd.c, vendor/easel/esl_swat.c, vendor/easel/esl_threads.c, vendor/easel/esl_tree.c, vendor/easel/esl_varint.c, vendor/easel/esl_vectorops.c, vendor/easel/esl_vmx.c, vendor/easel/esl_weibull.c, vendor/easel/esl_workqueue.c, vendor/easel/esl_wuss.c, vendor/easel/interface_gsl.c, vendor/easel/interface_lapack.c
  generating build/temp.linux-x86_64-cpython-312/esl_sqio_ascii.c from vendor/easel/esl_sqio_ascii.c
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/easel.o from vendor/easel/easel.c
  creating build/temp.linux-x86_64-cpython-312/vendor/easel
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/easel.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/easel.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_cpu.o from vendor/easel/esl_cpu.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_cpu.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_cpu.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_dirichlet.o from vendor/easel/esl_dirichlet.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_dirichlet.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_dirichlet.o
  vendor/easel/easel.c: In function ‘esl_FileNewSuffix’:
  vendor/easel/easel.c:1942:46: warning: operand of ‘?:’ changes signedness from ‘long int’ to ‘size_t’ {aka ‘long unsigned int’} due to unsignedness of other operand [-Wsign-compare]
   1942 |   nf = (lastdot == NULL)? strlen(filename) : lastdot-filename;
        |                                              ^~~~~~~~~~~~~~~~
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_distance.o from vendor/easel/esl_distance.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_distance.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_distance.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_alloc.o from vendor/easel/esl_alloc.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_alloc.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_alloc.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_dmatrix.o from vendor/easel/esl_dmatrix.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_dmatrix.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_dmatrix.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_alphabet.o from vendor/easel/esl_alphabet.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_alphabet.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_alphabet.o
  vendor/easel/esl_alphabet.c: In function ‘esl_alphabet_CreateCustom’:
  vendor/easel/esl_alphabet.c:107:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    107 |   if (strlen(alphabet) != Kp) ESL_XEXCEPTION(eslEINVAL, "alphabet length != Kp");
        |                        ^~
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_arr2.o from vendor/easel/esl_arr2.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_arr2.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_arr2.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_arr3.o from vendor/easel/esl_arr3.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_arr3.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_arr3.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_dsqdata.o from vendor/easel/esl_dsqdata.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_dsqdata.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_dsqdata.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_avx.o from vendor/easel/esl_avx.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_avx.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_avx.o
  vendor/easel/esl_dsqdata.c: In function ‘esl_dsqdata_Open’:
  vendor/easel/esl_dsqdata.c:255:21: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
    255 |       if (alphatype != dd->abc_r->type)
        |                     ^~
  vendor/easel/esl_dsqdata.c: In function ‘esl_dsqdata_Write’:
  vendor/easel/esl_dsqdata.c:617:17: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long int’} and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    617 |       if (sq->n > max_seqlen) max_seqlen = sq->n;
        |                 ^
  vendor/easel/esl_dsqdata.c:618:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    618 |       n = strlen(sq->name); if (n > max_namelen) max_namelen = n;
        |                                   ^
  vendor/easel/esl_dsqdata.c:619:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    619 |       n = strlen(sq->acc);  if (n > max_acclen)  max_acclen  = n;
        |                                   ^
  vendor/easel/esl_dsqdata.c:620:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    620 |       n = strlen(sq->desc); if (n > max_desclen) max_desclen = n;
        |                                   ^
  vendor/easel/esl_dsqdata.c:677:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    677 |       if ( fwrite(psq, sizeof(uint32_t), plen, sfp) != plen)
        |                                                     ^~
  vendor/easel/esl_dsqdata.c:683:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    683 |       if ( fwrite(sq->name, sizeof(char), n+1, mfp) != n+1)
        |                                                     ^~
  vendor/easel/esl_dsqdata.c:688:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    688 |       if ( fwrite(sq->acc,  sizeof(char), n+1, mfp) != n+1)
        |                                                     ^~
  vendor/easel/esl_dsqdata.c:693:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    693 |       if ( fwrite(sq->desc, sizeof(char), n+1, mfp) != n+1)
        |                                                     ^~
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_avx512.o from vendor/easel/esl_avx512.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_avx512.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_avx512.o
  vendor/easel/esl_dsqdata.c: In function ‘dsqdata_unpacker_thread’:
  vendor/easel/esl_dsqdata.c:1130:1: warning: control reaches end of non-void function [-Wreturn-type]
   1130 | }
        | ^
  vendor/easel/esl_dsqdata.c: In function ‘dsqdata_loader_thread’:
  vendor/easel/esl_dsqdata.c:1053:1: warning: control reaches end of non-void function [-Wreturn-type]
   1053 | }
        | ^
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_bitfield.o from vendor/easel/esl_bitfield.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_bitfield.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_bitfield.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_buffer.o from vendor/easel/esl_buffer.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_buffer.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_buffer.o
  vendor/easel/esl_buffer.c: In function ‘esl_buffer_OpenMem’:
  vendor/easel/esl_buffer.c:433:41: warning: operand of ‘?:’ changes signedness from ‘esl_pos_t’ {aka ‘long int’} to ‘size_t’ {aka ‘long unsigned int’} due to unsignedness of other operand [-Wsign-compare]
    433 |   bf->n       = (n == -1) ? strlen(p) : n;
        |                                         ^
  vendor/easel/esl_buffer.c: In function ‘esl_buffer_Read’:
  vendor/easel/esl_buffer.c:1494:23: warning: comparison of integer expressions of different signedness: ‘esl_pos_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1494 |   if (bf->n - bf->pos < nbytes)
        |                       ^
  vendor/easel/esl_buffer.c:1499:31: warning: comparison of integer expressions of different signedness: ‘esl_pos_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1499 |       else if  (bf->n-bf->pos < nbytes) return eslEOF;
        |                               ^
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_cluster.o from vendor/easel/esl_cluster.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_cluster.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_cluster.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_exponential.o from vendor/easel/esl_exponential.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_exponential.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_exponential.o
  vendor/easel/esl_cluster.c: In function ‘esl_cluster_SingleLinkage’:
  vendor/easel/esl_cluster.c:151:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    151 |    for (v = 0; v < n; v++) a[v] = n-v-1; /* initialize by pushing all vertices onto available list (backwards) */
        |                  ^
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_composition.o from vendor/easel/esl_composition.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_composition.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_composition.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_graph.o from vendor/easel/esl_graph.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_graph.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_graph.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_fileparser.o from vendor/easel/esl_fileparser.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_fileparser.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_fileparser.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_gumbel.o from vendor/easel/esl_gumbel.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_gumbel.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_gumbel.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_gamma.o from vendor/easel/esl_gamma.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_gamma.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_gamma.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_heap.o from vendor/easel/esl_heap.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_heap.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_heap.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_gencode.o from vendor/easel/esl_gencode.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_gencode.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_gencode.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_histogram.o from vendor/easel/esl_histogram.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_histogram.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_histogram.o
  vendor/easel/esl_histogram.c: In function ‘esl_histogram_GetRank’:
  vendor/easel/esl_histogram.c:541:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    541 |   if (rank > h->n)
        |            ^
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_getopts.o from vendor/easel/esl_getopts.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_getopts.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_getopts.o
  vendor/easel/esl_getopts.c: In function ‘get_optidx_abbrev’:
  vendor/easel/esl_getopts.c:1391:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1391 |         if (n == strlen(g->opt[i].name)) { nexact++; break; } /* an exact match; can stop now (xref bug #e4) */
        |               ^~
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_hmm.o from vendor/easel/esl_hmm.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_hmm.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_hmm.o
  In file included from vendor/easel/esl_hmm.c:9:
  vendor/easel/esl_hmm.c: In function ‘esl_hmx_GrowTo’:
  vendor/easel/easel.h:431:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    431 | #define ESL_MIN(a,b)          (((a)<(b))?(a):(b))
        |                                    ^
  vendor/easel/esl_hmm.c:265:20: note: in expansion of macro ‘ESL_MIN’
    265 |       mx->validR = ESL_MIN(mx->ncells / mx->allocM, mx->allocR);
        |                    ^~~~~~~
  vendor/easel/easel.h:431:46: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long unsigned int’} due to unsignedness of other operand [-Wsign-compare]
    431 | #define ESL_MIN(a,b)          (((a)<(b))?(a):(b))
        |                                              ^~~
  vendor/easel/esl_hmm.c:265:20: note: in expansion of macro ‘ESL_MIN’
    265 |       mx->validR = ESL_MIN(mx->ncells / mx->allocM, mx->allocR);
        |                    ^~~~~~~
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_huffman.o from vendor/easel/esl_huffman.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_huffman.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_huffman.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_gev.o from vendor/easel/esl_gev.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_gev.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_gev.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_hyperexp.o from vendor/easel/esl_hyperexp.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_hyperexp.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_hyperexp.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_matrixops.o from vendor/easel/esl_matrixops.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_matrixops.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_matrixops.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_mem.o from vendor/easel/esl_mem.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_mem.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_mem.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_iset.o from vendor/easel/esl_iset.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_iset.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_iset.o
  vendor/easel/esl_iset.c: In function ‘esl_iset_monoCobalt’:
  vendor/easel/esl_iset.c:127:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    127 |   for (v = 0; v < n; v++) a[v] = n-v-1; // initialize by putting all vertices into array a
        |                 ^
  vendor/easel/esl_iset.c:131:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    131 |   for (j = 0; j < n; j++)
        |                 ^
  vendor/easel/esl_iset.c:135:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    135 |       for (i = n; i < n+nb; i++)
        |                     ^
  vendor/easel/esl_iset.c: In function ‘esl_iset_biCobalt’:
  vendor/easel/esl_iset.c:209:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    209 |   for (v = 0; v < n; v++) a[v] = n-v-1;   // initialize by putting all vertices into an array
        |                 ^
  vendor/easel/esl_iset.c:213:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    213 |   for (j = 0; j <n; j++)
        |                 ^
  vendor/easel/esl_iset.c:220:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    220 |           for (i = n; i < n+nb1; i++)
        |                         ^
  vendor/easel/esl_iset.c:229:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    229 |               for (i = 2*n; i < 2*n+nb2; i++)
        |                               ^
  vendor/easel/esl_iset.c:253:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    253 |           for (i = 2*n; i < 2*n+nb2; i++)
        |                           ^
  vendor/easel/esl_iset.c:262:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    262 |               for (i = n; i < n+nb1; i++)
        |                             ^
  vendor/easel/esl_iset.c:287:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    287 |       for (i = 0; i < n; i++)
        |                     ^
  vendor/easel/esl_iset.c: In function ‘esl_iset_monoBlue’:
  vendor/easel/esl_iset.c:809:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    809 |   for (i = 0; i < n; i++)
        |                 ^
  vendor/easel/esl_iset.c: In function ‘esl_iset_biBlue’:
  vendor/easel/esl_iset.c:1011:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1011 |   for (i = 0; i < n; i++)
        |                 ^
  vendor/easel/esl_iset.c:1018:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1018 |   for (i = 0; i < n; i++)  elig[i]=3;
        |                 ^
  vendor/easel/esl_iset.c:1033:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1033 |       for (i = 0; i < n; i++)
        |                     ^
  vendor/easel/esl_iset.c: In function ‘esl_iset_biRandom’:
  vendor/easel/esl_iset.c:1089:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1089 |   for (i = 0; i < n; i++)
        |                 ^
  vendor/easel/esl_iset.c:1095:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1095 |   for (i = 0; i < n; i++)
        |                 ^
  vendor/easel/esl_iset.c:1100:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1100 |           for (j = 0; j < n; j++)
        |                         ^
  vendor/easel/esl_iset.c: In function ‘esl_iset_monoValidate’:
  vendor/easel/esl_iset.c:1173:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1173 |    for (i = 0; i < n; i++)
        |                  ^
  vendor/easel/esl_iset.c:1175:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1175 |        for (j = i+1; j < n; j++)
        |                        ^
  vendor/easel/esl_iset.c: In function ‘esl_iset_biValidate’:
  vendor/easel/esl_iset.c:1218:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1218 |    for (i = 0; i < n; i++)
        |                  ^
  vendor/easel/esl_iset.c:1220:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1220 |        for (j = i+1; j < n; j++)
        |                        ^
  vendor/easel/esl_iset.c:1230:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1230 |    for (i = 0; i < n; i++)
        |                  ^
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_minimizer.o from vendor/easel/esl_minimizer.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_minimizer.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_minimizer.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_json.o from vendor/easel/esl_json.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_json.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_json.o
  vendor/easel/esl_minimizer.c: In function ‘esl_min_ConjugateGradientDescent’:
  vendor/easel/esl_minimizer.c:243:23: warning: ‘fx’ may be used uninitialized [-Wmaybe-uninitialized]
    243 |   if (opt_fx) *opt_fx = fx;
        |               ~~~~~~~~^~~~
  vendor/easel/esl_minimizer.c:119:10: note: ‘fx’ was declared here
    119 |   double fx;
        |          ^~
  In function ‘brent’,
      inlined from ‘esl_min_ConjugateGradientDescent’ at vendor/easel/esl_minimizer.c:192:7:
  vendor/easel/esl_minimizer.c:720:21: warning: ‘ax’ may be used uninitialized [-Wmaybe-uninitialized]
    720 |       m   = 0.5 * (a+b);
        |                   ~~^~~
  vendor/easel/esl_minimizer.c: In function ‘esl_min_ConjugateGradientDescent’:
  vendor/easel/esl_minimizer.c:118:10: note: ‘ax’ was declared here
    118 |   double ax,bx,cx;
        |          ^~
  In function ‘brent’,
      inlined from ‘esl_min_ConjugateGradientDescent’ at vendor/easel/esl_minimizer.c:192:7:
  vendor/easel/esl_minimizer.c:720:21: warning: ‘cx’ may be used uninitialized [-Wmaybe-uninitialized]
    720 |       m   = 0.5 * (a+b);
        |                   ~~^~~
  vendor/easel/esl_minimizer.c: In function ‘esl_min_ConjugateGradientDescent’:
  vendor/easel/esl_minimizer.c:118:16: note: ‘cx’ was declared here
    118 |   double ax,bx,cx;
        |                ^~
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_mixdchlet.o from vendor/easel/esl_mixdchlet.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_mixdchlet.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_mixdchlet.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_keyhash.o from vendor/easel/esl_keyhash.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_keyhash.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_keyhash.o
  vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Clone’:
  vendor/easel/esl_keyhash.c:94:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
     94 |   for (h = 0; h < kh->hashsize; h++)
        |                 ^
  vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Reuse’:
  vendor/easel/esl_keyhash.c:171:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    171 |   for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1;
        |                 ^
  vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Dump’:
  vendor/easel/esl_keyhash.c:215:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    215 |   for (h = 0; h < kh->hashsize; h++)
        |                 ^
  vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Store’:
  vendor/easel/esl_keyhash.c:310:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    310 |   if (kh->nkeys > 3*kh->hashsize)
        |                 ^
  vendor/easel/esl_keyhash.c: In function ‘keyhash_create’:
  vendor/easel/esl_keyhash.c:401:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    401 |   for (i = 0; i < kh->hashsize; i++)  kh->hashtable[i] = -1;
        |                 ^
  vendor/easel/esl_keyhash.c: In function ‘key_upsize’:
  vendor/easel/esl_keyhash.c:491:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    491 |   for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1;
        |                 ^
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_mixgev.o from vendor/easel/esl_mixgev.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_mixgev.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_mixgev.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_lognormal.o from vendor/easel/esl_lognormal.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_lognormal.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_lognormal.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_msafile_afa.o from vendor/easel/esl_msafile_afa.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_msafile_afa.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_msafile_afa.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_mpi.o from vendor/easel/esl_mpi.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_mpi.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_mpi.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_msa.o from vendor/easel/esl_msa.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_msa.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_msa.o
  vendor/easel/esl_msa.c: In function ‘esl_msa_AddGS’:
  vendor/easel/esl_msa.c:1697:42: warning: operand of ‘?:’ changes signedness from ‘esl_pos_t’ {aka ‘long int’} to ‘size_t’ {aka ‘long unsigned int’} due to unsignedness of other operand [-Wsign-compare]
   1697 |       n2 = (vlen == -1 ? strlen(value) : vlen);
        |                                          ^~~~
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_msafile_clustal.o from vendor/easel/esl_msafile_clustal.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_msafile_clustal.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_msafile_clustal.o
  vendor/easel/esl_msa.c: In function ‘esl_msa_Validate’:
  vendor/easel/esl_msa.c:3168:38: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int64_t’ {aka ‘long int’} [-Wsign-compare]
   3168 |           if (strlen(msa->aseq[idx]) != msa->alen) ESL_FAIL(eslFAIL, errmsg, "seq %d: wrong length", idx);
        |                                      ^~
  vendor/easel/esl_msa.c:3175:61: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int64_t’ {aka ‘long int’} [-Wsign-compare]
   3175 |       if (msa->ss &&  msa->ss[idx] &&  strlen(msa->ss[idx]) != msa->alen) ESL_FAIL(eslFAIL, errmsg, "seq %d: SS wrong length", idx);
        |                                                             ^~
  vendor/easel/esl_msa.c:3176:61: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int64_t’ {aka ‘long int’} [-Wsign-compare]
   3176 |       if (msa->sa &&  msa->sa[idx] &&  strlen(msa->sa[idx]) != msa->alen) ESL_FAIL(eslFAIL, errmsg, "seq %d: SA wrong length", idx);
        |                                                             ^~
  vendor/easel/esl_msa.c:3177:61: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int64_t’ {aka ‘long int’} [-Wsign-compare]
   3177 |       if (msa->pp &&  msa->pp[idx] &&  strlen(msa->pp[idx]) != msa->alen) ESL_FAIL(eslFAIL, errmsg, "seq %d: PP wrong length", idx);
        |                                                             ^~
  vendor/easel/esl_msa.c:3181:44: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int64_t’ {aka ‘long int’} [-Wsign-compare]
   3181 |   if (msa->ss_cons && strlen(msa->ss_cons) != msa->alen) ESL_FAIL(eslFAIL, errmsg, "SS_cons wrong length");
        |                                            ^~
  vendor/easel/esl_msa.c:3182:44: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int64_t’ {aka ‘long int’} [-Wsign-compare]
   3182 |   if (msa->sa_cons && strlen(msa->sa_cons) != msa->alen) ESL_FAIL(eslFAIL, errmsg, "SA_cons wrong length");
        |                                            ^~
  vendor/easel/esl_msa.c:3183:44: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int64_t’ {aka ‘long int’} [-Wsign-compare]
   3183 |   if (msa->pp_cons && strlen(msa->pp_cons) != msa->alen) ESL_FAIL(eslFAIL, errmsg, "PP_cons wrong length");
        |                                            ^~
  vendor/easel/esl_msa.c:3184:44: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int64_t’ {aka ‘long int’} [-Wsign-compare]
   3184 |   if (msa->rf      && strlen(msa->rf)      != msa->alen) ESL_FAIL(eslFAIL, errmsg, "RF wrong length");
        |                                            ^~
  vendor/easel/esl_msa.c:3185:44: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int64_t’ {aka ‘long int’} [-Wsign-compare]
   3185 |   if (msa->mm      && strlen(msa->mm   )   != msa->alen) ESL_FAIL(eslFAIL, errmsg, "MM wrong length");
        |                                            ^~
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_msafile_phylip.o from vendor/easel/esl_msafile_phylip.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_msafile_phylip.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_msafile_phylip.o
  In function ‘phylip_interleaved_Read’,
      inlined from ‘esl_msafile_phylip_Read’ at vendor/easel/esl_msafile_phylip.c:284:56:
  vendor/easel/esl_msafile_phylip.c:452:15: warning: ‘block_alen’ may be used uninitialized [-Wmaybe-uninitialized]
    452 |       else if (cur_alen - alen != block_alen) ESL_XFAIL(eslEFORMAT, afp->errmsg, "number of residues on line differs from previous seqs in alignment block");
        |               ^
  vendor/easel/esl_msafile_phylip.c: In function ‘esl_msafile_phylip_Read’:
  vendor/easel/esl_msafile_phylip.c:422:13: note: ‘block_alen’ was declared here
    422 |   int64_t   block_alen;         /* # of residues being added by current block */
        |             ^~~~~~~~~~
  In function ‘phylip_check_interleaved’,
      inlined from ‘esl_msafile_phylip_CheckFileFormat’ at vendor/easel/esl_msafile_phylip.c:389:13:
  vendor/easel/esl_msafile_phylip.c:739:16: warning: ‘nres1’ may be used uninitialized [-Wmaybe-uninitialized]
    739 |       if (nres1+nres2 == alen) break;
        |           ~~~~~^~~~~~
  vendor/easel/esl_msafile_phylip.c: In function ‘esl_msafile_phylip_CheckFileFormat’:
  vendor/easel/esl_msafile_phylip.c:687:13: note: ‘nres1’ was declared here
    687 |   int       nres1;
        |             ^~~~~
  In function ‘phylip_deduce_namewidth’,
      inlined from ‘phylip_check_interleaved’ at vendor/easel/esl_msafile_phylip.c:747:22,
      inlined from ‘esl_msafile_phylip_CheckFileFormat’ at vendor/easel/esl_msafile_phylip.c:389:13:
  vendor/easel/esl_msafile_phylip.c:1048:10: warning: ‘ncols0’ may be used uninitialized [-Wmaybe-uninitialized]
   1048 |   for (c = ncols0-1; nres1 && c >= 0; c--)
        |        ~~^~~~~~~~~~
  vendor/easel/esl_msafile_phylip.c: In function ‘esl_msafile_phylip_CheckFileFormat’:
  vendor/easel/esl_msafile_phylip.c:683:20: note: ‘ncols0’ was declared here
    683 |   int       ncols, ncols0;
        |                    ^~~~~~
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_msafile_psiblast.o from vendor/easel/esl_msafile_psiblast.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_msafile_psiblast.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_msafile_psiblast.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_msafile_selex.o from vendor/easel/esl_msafile_selex.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_msafile_selex.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_msafile_selex.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_msacluster.o from vendor/easel/esl_msacluster.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_msacluster.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_msacluster.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_msafile.o from vendor/easel/esl_msafile.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_msafile.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_msafile.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_msafile2.o from vendor/easel/esl_msafile2.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_msafile2.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_msafile2.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_msafile_stockholm.o from vendor/easel/esl_msafile_stockholm.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_msafile_stockholm.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_msafile_stockholm.o
  vendor/easel/esl_msafile2.c: In function ‘msafile2_open’:
  vendor/easel/esl_msafile2.c:173:17: warning: unused variable ‘nc’ [-Wunused-variable]
    173 |   int           nc;
        |                 ^~
  In file included from vendor/easel/esl_msafile2.c:26:
  vendor/easel/esl_msafile2.c: In function ‘esl_msafile2_ReadInfoPfam’:
  vendor/easel/easel.h:432:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    432 | #define ESL_MAX(a,b)          (((a)>(b))?(a):(b))
        |                                    ^
  vendor/easel/esl_msafile2.c:632:43: note: in expansion of macro ‘ESL_MAX’
    632 |     for(i = 0; i < msa->ngc; i++) maxgc = ESL_MAX(maxgc, strlen(msa->gc_tag[i]));
        |                                           ^~~~~~~
  vendor/easel/easel.h:432:42: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘size_t’ {aka ‘long unsigned int’} due to unsignedness of other operand [-Wsign-compare]
    432 | #define ESL_MAX(a,b)          (((a)>(b))?(a):(b))
        |                                          ^~~
  vendor/easel/esl_msafile2.c:632:43: note: in expansion of macro ‘ESL_MAX’
    632 |     for(i = 0; i < msa->ngc; i++) maxgc = ESL_MAX(maxgc, strlen(msa->gc_tag[i]));
        |                                           ^~~~~~~
  vendor/easel/easel.h:432:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    432 | #define ESL_MAX(a,b)          (((a)>(b))?(a):(b))
        |                                    ^
  vendor/easel/esl_msafile2.c:641:43: note: in expansion of macro ‘ESL_MAX’
    641 |     for(i = 0; i < msa->ngf; i++) maxgf = ESL_MAX(maxgf, strlen(msa->gf_tag[i]));
        |                                           ^~~~~~~
  vendor/easel/easel.h:432:42: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘size_t’ {aka ‘long unsigned int’} due to unsignedness of other operand [-Wsign-compare]
    432 | #define ESL_MAX(a,b)          (((a)>(b))?(a):(b))
        |                                          ^~~
  vendor/easel/esl_msafile2.c:641:43: note: in expansion of macro ‘ESL_MAX’
    641 |     for(i = 0; i < msa->ngf; i++) maxgf = ESL_MAX(maxgf, strlen(msa->gf_tag[i]));
        |                                           ^~~~~~~
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_msafile_a2m.o from vendor/easel/esl_msafile_a2m.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_msafile_a2m.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_msafile_a2m.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_msashuffle.o from vendor/easel/esl_msashuffle.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_msashuffle.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_msashuffle.o
  vendor/easel/esl_msashuffle.c: In function ‘esl_msashuffle_CQRNA’:
  vendor/easel/esl_msashuffle.c:449:17: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    449 |   if (strlen(y) != L) ESL_XEXCEPTION(eslEINVAL, "sequences of different lengths in qrna shuffle");
        |                 ^~
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_msaweight.o from vendor/easel/esl_msaweight.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_msaweight.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_msaweight.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_quicksort.o from vendor/easel/esl_quicksort.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_quicksort.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_quicksort.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_rand64.o from vendor/easel/esl_rand64.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_rand64.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_rand64.o
  vendor/easel/esl_msaweight.c: In function ‘esl_msaweight_IDFilter_adv’:
  vendor/easel/esl_msaweight.c:1035:9: warning: ‘conscols_104’ may be used uninitialized [-Wmaybe-uninitialized]
   1035 |         collect_counts(cfg, msa, conscols, ncons, ct, NULL);
        |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  vendor/easel/esl_msaweight.c:435:1: note: by argument 3 of type ‘const int *’ to ‘collect_counts.isra.0’ declared here
    435 | collect_counts(const ESL_MSAWEIGHT_CFG *cfg, const ESL_MSA *msa, const int *conscols, int ncons, int **ct, ESL_MSAWEIGHT_DAT *dat)
        | ^~~~~~~~~~~~~~
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_neon.o from vendor/easel/esl_neon.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_neon.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_neon.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_normal.o from vendor/easel/esl_normal.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_normal.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_normal.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_random.o from vendor/easel/esl_random.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_random.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_random.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_paml.o from vendor/easel/esl_paml.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_paml.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_paml.o
  vendor/easel/esl_random.c: In function ‘esl_rnd_Roll’:
  vendor/easel/esl_random.c:319:54: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
    319 |   do { u = esl_random_uint32(r) / factor; } while (u >= n);
        |                                                      ^~
  vendor/easel/esl_random.c: In function ‘gamma_integer’:
  vendor/easel/esl_random.c:655:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
    655 |   for (i = 0; i < a; i++)
        |                 ^
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_sqio.o from vendor/easel/esl_sqio.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_sqio.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_sqio.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_randomseq.o from vendor/easel/esl_randomseq.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_randomseq.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_randomseq.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_sqio_ncbi.o from vendor/easel/esl_sqio_ncbi.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_sqio_ncbi.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_sqio_ncbi.o
  vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ParseIndexFile’:
  vendor/easel/esl_sqio_ncbi.c:216:24: warning: comparison of integer expressions of different signedness: ‘__uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
    216 |   if (htobe32(info[1]) != dbtype)                             status = eslEUNIMPLEMENTED;
        |                        ^~
  vendor/easel/esl_sqio_ncbi.c:226:58: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    226 |   if (fread(ncbi->title, sizeof(char), len, ncbi->fppin) != len) { status = eslFAIL; goto ERROR; }
        |                                                          ^~
  vendor/easel/esl_sqio_ncbi.c:233:62: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    233 |   if (fread(ncbi->timestamp, sizeof(char), len, ncbi->fppin) != len) { status = eslFAIL; goto ERROR; }
        |                                                              ^~
  vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_Read’:
  vendor/easel/esl_sqio_ncbi.c:758:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    758 |   if (ncbi->index >= ncbi->num_seq) return eslEOF;
        |                   ^~
  vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadInfo’:
  vendor/easel/esl_sqio_ncbi.c:809:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    809 |   if (ncbi->index >= ncbi->num_seq) return eslEOF;
        |                   ^~
  vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadSequence’:
  vendor/easel/esl_sqio_ncbi.c:860:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    860 |   if (ncbi->index >= ncbi->num_seq) return eslEOF;
        |                   ^~
  vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadWindow’:
  vendor/easel/esl_sqio_ncbi.c:1036:33: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   1036 |     if (status != eslOK || nres != W) {
        |                                 ^~
  vendor/easel/esl_sqio_ncbi.c:1059:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
   1059 |       if (ncbi->index >= ncbi->num_seq) return eslEOF;
        |                       ^~
  vendor/easel/esl_sqio_ncbi.c: In function ‘volume_open’:
  vendor/easel/esl_sqio_ncbi.c:1421:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
   1421 |   if (volume < 0 || volume > ncbi->volumes) return eslEINVAL;
        |                            ^
  vendor/easel/esl_sqio_ncbi.c:1458:24: warning: comparison of integer expressions of different signedness: ‘__uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
   1458 |   if (htobe32(info[1]) != dbtype)                             status = eslEFORMAT;
        |                        ^~
  vendor/easel/esl_sqio_ncbi.c: In function ‘pos_sequence’:
  vendor/easel/esl_sqio_ncbi.c:1513:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
   1513 |   if (inx < 0 || inx > ncbi->num_seq) return eslEINVAL;
        |                      ^
  vendor/easel/esl_sqio_ncbi.c:1519:25: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
   1519 |   if (ncbi->index_start == -1 || inx < start || inx > end) {
        |                         ^~
  vendor/easel/esl_sqio_ncbi.c:1519:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
   1519 |   if (ncbi->index_start == -1 || inx < start || inx > end) {
        |                                      ^
  vendor/easel/esl_sqio_ncbi.c:1519:53: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
   1519 |   if (ncbi->index_start == -1 || inx < start || inx > end) {
        |                                                     ^
  vendor/easel/esl_sqio_ncbi.c:1524:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
   1524 |       if (inx < volume->start_seq || inx > volume->end_seq) {
        |               ^
  vendor/easel/esl_sqio_ncbi.c:1524:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
   1524 |       if (inx < volume->start_seq || inx > volume->end_seq) {
        |                                          ^
  vendor/easel/esl_sqio_ncbi.c:1526:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
   1526 |         for (cnt = 0; cnt < ncbi->volumes; ++cnt) {
        |                           ^
  vendor/easel/esl_sqio_ncbi.c:1527:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
   1527 |           if (inx < volume->end_seq) break;
        |                   ^
  vendor/easel/esl_sqio_ncbi.c:1532:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
   1532 |         if (cnt >= ncbi->volumes) return eslFAIL;
        |                 ^~
  vendor/easel/esl_sqio_ncbi.c:1539:27: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
   1539 |     if (ncbi->index_start == -1 || inx > end) {
        |                           ^~
  vendor/easel/esl_sqio_ncbi.c:1539:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
   1539 |     if (ncbi->index_start == -1 || inx > end) {
        |                                        ^
  vendor/easel/esl_sqio_ncbi.c:1564:70: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   1564 |     if (fread(ncbi->hdr_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) {
        |                                                                      ^~
  vendor/easel/esl_sqio_ncbi.c:1572:70: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   1572 |     if (fread(ncbi->seq_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) {
        |                                                                      ^~
  vendor/easel/esl_sqio_ncbi.c:1581:72: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   1581 |       if (fread(ncbi->amb_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) {
        |                                                                        ^~
  vendor/easel/esl_sqio_ncbi.c: In function ‘read_amino’:
  vendor/easel/esl_sqio_ncbi.c:1623:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
   1623 |   if (ncbi->index >= ncbi->num_seq) return eslEOF;
        |                   ^~
  vendor/easel/esl_sqio_ncbi.c:1633:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   1633 |     if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT;
        |                                                     ^~
  vendor/easel/esl_sqio_ncbi.c:1641:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   1641 |     if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT;
        |                                                     ^~
  vendor/easel/esl_sqio_ncbi.c: In function ‘read_dna’:
  vendor/easel/esl_sqio_ncbi.c:1690:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
   1690 |   if (ncbi->index >= ncbi->num_seq) return eslEOF;
        |                   ^~
  vendor/easel/esl_sqio_ncbi.c:1701:61: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   1701 |   if (fread(ncbi->hdr_buf, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT;
        |                                                             ^~
  vendor/easel/esl_sqio_ncbi.c: In function ‘read_nres_amino’:
  vendor/easel/esl_sqio_ncbi.c:1831:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
   1831 |   if (ncbi->index >= ncbi->num_seq) return eslEOF;
        |                   ^~
  vendor/easel/esl_sqio_ncbi.c:1856:51: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   1856 |   if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT;
        |                                                   ^~
  vendor/easel/esl_sqio_ncbi.c: In function ‘correct_ambiguity’:
  vendor/easel/esl_sqio_ncbi.c:1924:65: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int64_t’ {aka ‘long int’} [-Wsign-compare]
   1924 |       if (fread(ncbi->hdr_buf, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT;
        |                                                                 ^~
  vendor/easel/esl_sqio_ncbi.c: In function ‘read_nres_dna’:
  vendor/easel/esl_sqio_ncbi.c:2005:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
   2005 |   if (ncbi->index >= ncbi->num_seq) return eslEOF;
        |                   ^~
  vendor/easel/esl_sqio_ncbi.c:2047:62: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   2047 |   if (fread(ncbi->hdr_buf, sizeof(char), ssize, ncbi->fppsq) != ssize) return eslEFORMAT;
        |                                                              ^~
  vendor/easel/esl_sqio_ncbi.c: In function ‘inmap_ncbi_dna’:
  vendor/easel/esl_sqio_ncbi.c:2178:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   2178 |   for (x = 0; x < strlen(ncbisym); ++x) {
        |                 ^
  vendor/easel/esl_sqio_ncbi.c:2179:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   2179 |     for (y = 0; y < strlen(abc->sym); ++y) {
        |                   ^
  vendor/easel/esl_sqio_ncbi.c:2187:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   2187 |     if (y >= strlen(abc->sym)) return eslEFORMAT;
        |           ^~
  vendor/easel/esl_sqio_ncbi.c: In function ‘inmap_ncbi_amino’:
  vendor/easel/esl_sqio_ncbi.c:2226:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   2226 |   for (x = 0; x < strlen(ncbisym); ++x) {
        |                 ^
  vendor/easel/esl_sqio_ncbi.c:2227:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   2227 |     for (y = 0; y < strlen(abc->sym); ++y) {
        |                   ^
  vendor/easel/esl_sqio_ncbi.c:2235:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   2235 |     if (y >= strlen(abc->sym)) return eslEFORMAT;
        |           ^~
  vendor/easel/esl_sqio_ncbi.c: In function ‘parse_header’:
  vendor/easel/esl_sqio_ncbi.c:2463:61: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   2463 |   if (fread(ncbi->hdr_buf, sizeof(char), size, ncbi->fpphr) != size) return eslEFORMAT;
        |                                                             ^~
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_ratematrix.o from vendor/easel/esl_ratematrix.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_ratematrix.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_ratematrix.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_recorder.o from vendor/easel/esl_recorder.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_recorder.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_recorder.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_red_black.o from vendor/easel/esl_red_black.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_red_black.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_red_black.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_regexp.o from vendor/easel/esl_regexp.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_regexp.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_regexp.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_sse.o from vendor/easel/esl_sse.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_sse.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_sse.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_rootfinder.o from vendor/easel/esl_rootfinder.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_rootfinder.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_rootfinder.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_scorematrix.o from vendor/easel/esl_scorematrix.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_scorematrix.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_scorematrix.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_ssi.o from vendor/easel/esl_ssi.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_ssi.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_ssi.o
  vendor/easel/esl_ssi.c: In function ‘esl_ssi_FindNumber’:
  vendor/easel/esl_ssi.c:261:12: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long int’} and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    261 |   if (nkey >= ssi->nprimary) { status = eslENOTFOUND; goto ERROR; }
        |            ^~
  vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddFile’:
  vendor/easel/esl_ssi.c:728:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    728 |   if ((n+1) > ns->flen) ns->flen = n+1;
        |             ^
  vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddKey’:
  vendor/easel/esl_ssi.c:862:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    862 |   if (n > ns->plen) ns->plen = n;
        |         ^
  vendor/easel/esl_ssi.c:893:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    893 |         for (i = ns->nprimary; i < ns->nprimary + eslSSI_KCHUNK; i++)
        |                                  ^
  vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddAlias’:
  vendor/easel/esl_ssi.c:941:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    941 |   if (n > ns->slen) ns->slen = n;
        |         ^
  vendor/easel/esl_ssi.c:957:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    957 |         for (i = ns->nsecondary; i < ns->nsecondary+eslSSI_KCHUNK; i++) {
        |                                    ^
  vendor/easel/esl_ssi.c: In function ‘esl_newssi_Write’:
  vendor/easel/esl_ssi.c:1143:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1143 |       for (i = 0; i < ns->nprimary; i++)
        |                     ^
  vendor/easel/esl_ssi.c:1161:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1161 |       for (i = 0; i < ns->nprimary; i++)
        |                     ^
  vendor/easel/esl_ssi.c:1181:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1181 |       for (i = 0; i < ns->nsecondary; i++)
        |                     ^
  vendor/easel/esl_ssi.c:1198:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1198 |       for (i = 0; i < ns->nsecondary; i++)
        |                     ^
  vendor/easel/esl_ssi.c: In function ‘esl_newssi_Close’:
  vendor/easel/esl_ssi.c:1247:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1247 |           for (i = 0; i < ns->nprimary; i++)
        |                         ^
  vendor/easel/esl_ssi.c:1253:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1253 |           for (i = 0; i < ns->nsecondary; i++)
        |                         ^
  vendor/easel/esl_ssi.c: In function ‘activate_external_sort’:
  vendor/easel/esl_ssi.c:1345:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1345 |   for (i = 0; i < ns->nprimary; i++) {
        |                 ^
  vendor/easel/esl_ssi.c:1364:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1364 |   for (i = 0; i < ns->nsecondary; i++)
        |                 ^
  vendor/easel/esl_ssi.c:1370:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1370 |   for (i = 0; i < ns->nprimary;   i++) free(ns->pkeys[i].key);
        |                 ^
  vendor/easel/esl_ssi.c:1371:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1371 |   for (i = 0; i < ns->nsecondary; i++) free(ns->skeys[i].key);
        |                 ^
  vendor/easel/esl_ssi.c:1372:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1372 |   for (i = 0; i < ns->nsecondary; i++) free(ns->skeys[i].pkey);
        |                 ^
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_sq.o from vendor/easel/esl_sq.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_sq.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_sq.o
  vendor/easel/esl_sq.c: In function ‘esl_sq_CreateFrom’:
  vendor/easel/esl_sq.c:104:22: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int64_t’ {aka ‘long int’} [-Wsign-compare]
    104 |       if (strlen(ss) != n) ESL_XEXCEPTION(eslEINVAL, "ss, seq lengths mismatch");
        |                      ^~
  vendor/easel/esl_sq.c: In function ‘esl_sq_CreateDigitalFrom’:
  vendor/easel/esl_sq.c:787:22: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int64_t’ {aka ‘long int’} [-Wsign-compare]
    787 |       if (strlen(ss) != sq->n) ESL_XEXCEPTION(eslEINVAL, "ss, seq lengths mismatch");
        |                      ^~
  vendor/easel/esl_sq.c: In function ‘esl_sq_Checksum’:
  vendor/easel/esl_sq.c:1638:25: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘int64_t’ {aka ‘long int’} [-Wsign-compare]
   1638 |       for (pos = 0; pos < sq->n; pos++)
        |                         ^
  vendor/easel/esl_sq.c:1647:25: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘int64_t’ {aka ‘long int’} [-Wsign-compare]
   1647 |       for (pos = 1; pos <= sq->n; pos++)
        |                         ^~
  vendor/easel/esl_sq.c: In function ‘esl_sq_Validate’:
  vendor/easel/esl_sq.c:2023:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int64_t’ {aka ‘long int’} [-Wsign-compare]
   2023 |         if (strlen(sq->ss+1)      != sq->n) ESL_FAIL(eslFAIL, errmsg, "ss annotation length (for digital seq) doesn't agree with sq->n");
        |                                   ^~
  vendor/easel/esl_sq.c:2030:36: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int64_t’ {aka ‘long int’} [-Wsign-compare]
   2030 |       if (strlen(sq->seq)          != sq->n) ESL_FAIL(eslFAIL, errmsg, "text seq length doesn't agree with sq->n");
        |                                    ^~
  vendor/easel/esl_sq.c:2031:36: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int64_t’ {aka ‘long int’} [-Wsign-compare]
   2031 |       if (sq->ss && strlen(sq->ss) != sq->n) ESL_FAIL(eslFAIL, errmsg, "ss annotation length (for text seq) doesn't agree with sq->n");
        |                                    ^~
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_stack.o from vendor/easel/esl_stack.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_stack.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_stack.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_stats.o from vendor/easel/esl_stats.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_stats.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_stats.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_stopwatch.o from vendor/easel/esl_stopwatch.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_stopwatch.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_stopwatch.o
  vendor/easel/esl_stopwatch.c:15:15: warning: ‘stopwatch_getRealTime’ declared ‘static’ but never defined [-Wunused-function]
     15 | static double stopwatch_getRealTime(void);
        |               ^~~~~~~~~~~~~~~~~~~~~
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_stretchexp.o from vendor/easel/esl_stretchexp.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_stretchexp.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_stretchexp.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_tree.o from vendor/easel/esl_tree.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_tree.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_tree.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_subcmd.o from vendor/easel/esl_subcmd.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_subcmd.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_subcmd.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_swat.o from vendor/easel/esl_swat.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_swat.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_swat.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_threads.o from vendor/easel/esl_threads.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_threads.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_threads.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_varint.o from vendor/easel/esl_varint.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_varint.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_varint.o
  vendor/easel/esl_varint.c: In function ‘esl_varint_google_decode’:
  vendor/easel/esl_varint.c:471:11: warning: ‘grp’ may be used uninitialized [-Wmaybe-uninitialized]
    471 |   if (grp & cmask) { status = eslEOD; goto ERROR; }
        |       ~~~~^~~~~~~
  vendor/easel/esl_varint.c:461:12: note: ‘grp’ was declared here
    461 |   uint64_t grp;                     // current k-bit code group
        |            ^~~
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_vectorops.o from vendor/easel/esl_vectorops.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_vectorops.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_vectorops.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_vmx.o from vendor/easel/esl_vmx.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_vmx.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_vmx.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_weibull.o from vendor/easel/esl_weibull.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_weibull.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_weibull.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_workqueue.o from vendor/easel/esl_workqueue.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_workqueue.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_workqueue.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/esl_wuss.o from vendor/easel/esl_wuss.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/esl_wuss.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_wuss.o
  vendor/easel/esl_wuss.c: In function ‘esl_wuss2ct’:
  vendor/easel/esl_wuss.c:136:10: warning: ‘status’ may be used uninitialized [-Wmaybe-uninitialized]
    136 |   return status;
        |          ^~~~~~
  vendor/easel/esl_wuss.c:56:14: note: ‘status’ was declared here
     56 |   int        status;      /* success or failure return status */
        |              ^~~~~~
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/interface_gsl.o from vendor/easel/interface_gsl.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/interface_gsl.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/interface_gsl.o
  generating build/temp.linux-x86_64-cpython-312/vendor/easel/interface_lapack.o from vendor/easel/interface_lapack.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/easel/interface_lapack.c -o build/temp.linux-x86_64-cpython-312/vendor/easel/interface_lapack.o
  generating build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/esl_sqio_ascii.o from build/temp.linux-x86_64-cpython-312/esl_sqio_ascii.c
  creating build/temp.linux-x86_64-cpython-312/build
  creating build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/esl_sqio_ascii.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/esl_sqio_ascii.o
  build/temp.linux-x86_64-cpython-312/esl_sqio_ascii.c: In function ‘esl_sqascii_Open’:
  build/temp.linux-x86_64-cpython-312/esl_sqio_ascii.c:141:15: warning: unused variable ‘nc’ [-Wunused-variable]
    141 |   int         nc;
        |               ^~
  build/temp.linux-x86_64-cpython-312/esl_sqio_ascii.c:140:15: warning: unused variable ‘n’ [-Wunused-variable]
    140 |   int         n;
        |               ^
  build/temp.linux-x86_64-cpython-312/esl_sqio_ascii.c: In function ‘sqascii_Echo’:
  build/temp.linux-x86_64-cpython-312/esl_sqio_ascii.c:1671:60: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   1671 |       if (fwrite(ascii->buf, sizeof(char), ascii->nc, ofp) != ascii->nc) ESL_EXCEPTION(eslESYS, "fwrite() failed");
        |                                                            ^~
  ar rcs build/temp.linux-x86_64-cpython-312/libeasel.a build/temp.linux-x86_64-cpython-312/vendor/easel/easel.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_alloc.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_alphabet.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_arr2.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_arr3.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_avx.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_avx512.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_bitfield.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_buffer.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_cluster.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_composition.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_cpu.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_dirichlet.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_distance.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_dmatrix.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_dsqdata.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_exponential.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_fileparser.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_gamma.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_gencode.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_getopts.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_gev.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_graph.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_gumbel.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_heap.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_histogram.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_hmm.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_huffman.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_hyperexp.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_iset.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_json.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_keyhash.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_lognormal.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_matrixops.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_mem.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_minimizer.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_mixdchlet.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_mixgev.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_mpi.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_msa.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_msacluster.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_msafile.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_msafile2.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_msafile_a2m.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_msafile_afa.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_msafile_clustal.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_msafile_phylip.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_msafile_psiblast.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_msafile_selex.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_msafile_stockholm.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_msashuffle.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_msaweight.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_neon.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_normal.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_paml.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_quicksort.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_rand64.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_random.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_randomseq.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_ratematrix.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_recorder.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_red_black.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_regexp.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_rootfinder.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_scorematrix.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_sq.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_sqio.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_sqio_ncbi.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_sse.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_ssi.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_stack.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_stats.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_stopwatch.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_stretchexp.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_subcmd.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_swat.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_threads.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_tree.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_varint.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_vectorops.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_vmx.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_weibull.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_workqueue.o build/temp.linux-x86_64-cpython-312/vendor/easel/esl_wuss.o build/temp.linux-x86_64-cpython-312/vendor/easel/interface_gsl.o build/temp.linux-x86_64-cpython-312/vendor/easel/interface_lapack.o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/esl_sqio_ascii.o
  generating build/temp.linux-x86_64-cpython-312/libhmmer.a from vendor/hmmer/src/build.c, vendor/hmmer/src/cachedb.c, vendor/hmmer/src/cachedb_shard.c, vendor/hmmer/src/emit.c, vendor/hmmer/src/errors.c, vendor/hmmer/src/evalues.c, vendor/hmmer/src/eweight.c, vendor/hmmer/src/generic_decoding.c, vendor/hmmer/src/generic_fwdback.c, vendor/hmmer/src/generic_fwdback_chk.c, vendor/hmmer/src/generic_fwdback_banded.c, vendor/hmmer/src/generic_null2.c, vendor/hmmer/src/generic_msv.c, vendor/hmmer/src/generic_optacc.c, vendor/hmmer/src/generic_stotrace.c, vendor/hmmer/src/generic_viterbi.c, vendor/hmmer/src/generic_vtrace.c, vendor/hmmer/src/h2_io.c, vendor/hmmer/src/heatmap.c, vendor/hmmer/src/hmmlogo.c, vendor/hmmer/src/hmmdmstr.c, vendor/hmmer/src/hmmdmstr_shard.c, vendor/hmmer/src/hmmd_search_status.c, vendor/hmmer/src/hmmdwrkr.c, vendor/hmmer/src/hmmdwrkr_shard.c, vendor/hmmer/src/hmmdutils.c, vendor/hmmer/src/hmmer.c, vendor/hmmer/src/logsum.c, vendor/hmmer/src/modelconfig.c, vendor/hmmer/src/modelstats.c, vendor/hmmer/src/mpisupport.c, vendor/hmmer/src/seqmodel.c, vendor/hmmer/src/tracealign.c, vendor/hmmer/src/p7_alidisplay.c, vendor/hmmer/src/p7_bg.c, vendor/hmmer/src/p7_builder.c, vendor/hmmer/src/p7_domain.c, vendor/hmmer/src/p7_domaindef.c, vendor/hmmer/src/p7_gbands.c, vendor/hmmer/src/p7_gmx.c, vendor/hmmer/src/p7_gmxb.c, vendor/hmmer/src/p7_gmxchk.c, vendor/hmmer/src/p7_hit.c, vendor/hmmer/src/p7_hmm.c, vendor/hmmer/src/p7_hmmcache.c, vendor/hmmer/src/p7_hmmd_search_stats.c, vendor/hmmer/src/p7_hmmfile.c, vendor/hmmer/src/p7_hmmwindow.c, vendor/hmmer/src/p7_pipeline.c, vendor/hmmer/src/p7_prior.c, vendor/hmmer/src/p7_profile.c, vendor/hmmer/src/p7_spensemble.c, vendor/hmmer/src/p7_tophits.c, vendor/hmmer/src/p7_trace.c, vendor/hmmer/src/p7_scoredata.c, vendor/hmmer/src/hmmpgmd2msa.c, vendor/hmmer/src/fm_alphabet.c, vendor/hmmer/src/fm_general.c, vendor/hmmer/src/fm_sse.c, vendor/hmmer/src/fm_ssv.c
  generating build/temp.linux-x86_64-cpython-312/p7_hmmfile.c from vendor/hmmer/src/p7_hmmfile.c
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/build.o from vendor/hmmer/src/build.c
  creating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/build.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/build.o
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/generic_fwdback_chk.o from vendor/hmmer/src/generic_fwdback_chk.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/generic_fwdback_chk.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/generic_fwdback_chk.o
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/cachedb.o from vendor/hmmer/src/cachedb.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/cachedb.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/cachedb.o
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/generic_fwdback_banded.o from vendor/hmmer/src/generic_fwdback_banded.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/generic_fwdback_banded.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/generic_fwdback_banded.o
  vendor/hmmer/src/cachedb.c: In function ‘p7_seqcache_Open’:
  vendor/hmmer/src/cachedb.c:95:14: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘long unsigned int’ [-Wsign-compare]
     95 |   if (db_cnt > (sizeof(db_inx)/sizeof(db_inx[0])))      return eslEFORMAT;
        |              ^
  vendor/hmmer/src/cachedb.c:157:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    157 |     if (inx >= seq_cnt)       { printf("inx: %d\n", inx); return eslEFORMAT; }
        |             ^~
  vendor/hmmer/src/cachedb.c:158:19: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long int’} and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    158 |     if (sq->n + 1 > res_size) { printf("inx: %d size %d %d\n", inx, (int)sq->n + 1, (int)res_size); return eslEFORMAT; }
        |                   ^
  vendor/hmmer/src/cachedb.c:179:16: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
    179 |     if (db_key >= (1 << (db_cnt + 1))) { printf("inx: %d db %d %s\n", inx, db_key, sq->desc); return eslEFORMAT; }
        |                ^~
  vendor/hmmer/src/cachedb.c:212:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    212 |   if (inx != seq_cnt) { printf("inx:: %d %" PRIu64 "\n", inx, seq_cnt);  return eslEFORMAT; }
        |           ^~
  vendor/hmmer/src/cachedb.c:222:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    222 |   for (i = 0 ; i < seq_cnt; ++i) {
        |                  ^
  vendor/hmmer/src/cachedb.c:230:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    230 |   for (i = 0 ; i < seq_cnt; ++i) {
        |                  ^
  vendor/hmmer/src/cachedb.c:236:25: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    236 |         if (db_inx[inx] >= db->count) { printf("sort:: %d %d\n", db_inx[inx], db->count); return eslEFORMAT; }
        |                         ^~
  vendor/hmmer/src/cachedb.c:246:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    246 |   for (i = 0; i < cache->db_cnt; ++i) {
        |                 ^
  vendor/hmmer/src/cachedb.c: In function ‘p7_seqcache_Close’:
  vendor/hmmer/src/cachedb.c:284:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    284 |       for (i = 0; i < cache->db_cnt; ++i) {
        |                     ^
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/cachedb_shard.o from vendor/hmmer/src/cachedb_shard.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/cachedb_shard.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/cachedb_shard.o
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/generic_null2.o from vendor/hmmer/src/generic_null2.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/generic_null2.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/generic_null2.o
  vendor/hmmer/src/cachedb_shard.c: In function ‘p7_seqcache_Open_master’:
  vendor/hmmer/src/cachedb_shard.c:117:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    117 |   for (i = 0; i < db_cnt; ++i) {
        |                 ^
  vendor/hmmer/src/cachedb_shard.c:159:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    159 |   for (i = 0; i < db_cnt; ++i) db_inx[i] = 0;
        |                 ^
  vendor/hmmer/src/cachedb_shard.c:167:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    167 |     if (inx >= seq_cnt)       { printf("inx: %d\n", inx); return eslEFORMAT; }
        |             ^~
  vendor/hmmer/src/cachedb_shard.c:191:16: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
    191 |     if (db_key >= (1 << (db_cnt + 1))) { printf("inx: %d db_cnt %d db %d %s\n", inx, db_cnt, db_key, sq->desc); return eslEFORMAT; }
        |                ^~
  vendor/hmmer/src/cachedb_shard.c:225:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    225 |   if (inx != seq_cnt) { printf("inx:: %d %" PRIu64 "\n", inx, seq_cnt);  return eslEFORMAT; }
        |           ^~
  vendor/hmmer/src/cachedb_shard.c:235:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    235 |   for (i = 0 ; i < seq_cnt; ++i) {
        |                  ^
  vendor/hmmer/src/cachedb_shard.c:243:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    243 |   for (i = 0 ; i < seq_cnt; ++i) {
        |                  ^
  vendor/hmmer/src/cachedb_shard.c:259:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    259 |   for (i = 0; i < cache->db_cnt; ++i) {
        |                 ^
  vendor/hmmer/src/cachedb_shard.c:282:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    282 |   for (i = 0; i < db_cnt; ++i) {
        |                 ^
  vendor/hmmer/src/cachedb_shard.c: In function ‘p7_seqcache_Close_master’:
  vendor/hmmer/src/cachedb_shard.c:297:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    297 |       for (i = 0; i < cache->db_cnt; ++i) {
        |                     ^
  vendor/hmmer/src/cachedb_shard.c: In function ‘p7_seqcache_Open_shard’:
  vendor/hmmer/src/cachedb_shard.c:388:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    388 |   for (i = 0; i < db_cnt; ++i) {
        |                 ^
  vendor/hmmer/src/cachedb_shard.c:398:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    398 |   for (i = 0; i < db_cnt; i++){
        |                 ^
  vendor/hmmer/src/cachedb_shard.c:434:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    434 |   for (i = 0; i < db_cnt; ++i) db_inx[i] = 0;
        |                 ^
  vendor/hmmer/src/cachedb_shard.c:445:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    445 |     if (inx >= seq_cnt)       { printf("inx: %d\n", inx); return eslEFORMAT; }
        |             ^~
  vendor/hmmer/src/cachedb_shard.c:446:19: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long int’} and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    446 |     if (sq->n + 1 > res_size) { printf("inx: %d size %d %d\n", inx, (int)sq->n + 1, (int)res_size); return eslEFORMAT; }
        |                   ^
  vendor/hmmer/src/cachedb_shard.c:463:41: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    463 |         if(db_seq_count[i] % num_shards == my_shard){ //this sequence is part of database i and belongs to this node's shard
        |                                         ^~
  vendor/hmmer/src/cachedb_shard.c:475:16: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
    475 |     if (db_key >= (1 << (db_cnt + 1))) { printf("inx: %d db %d %s\n", inx, db_key, sq->desc); return eslEFORMAT; }
        |                ^~
  vendor/hmmer/src/cachedb_shard.c:544:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    544 |   for(i = 0; i < db_cnt; i++){
        |                ^
  vendor/hmmer/src/cachedb_shard.c:560:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    560 |   for (i = 0 ; i < seq_cnt; ++i) {
        |                  ^
  vendor/hmmer/src/cachedb_shard.c:568:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    568 |   for (i = 0 ; i < seq_cnt; ++i) {
        |                  ^
  vendor/hmmer/src/cachedb_shard.c:585:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    585 |   for (i = 0; i < cache->db_cnt; ++i) {
        |                 ^
  vendor/hmmer/src/cachedb_shard.c:615:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    615 |   for (i = 0; i < db_cnt; ++i) {
        |                 ^
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/generic_msv.o from vendor/hmmer/src/generic_msv.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/generic_msv.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/generic_msv.o
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/emit.o from vendor/hmmer/src/emit.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/emit.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/emit.o
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/generic_optacc.o from vendor/hmmer/src/generic_optacc.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/generic_optacc.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/generic_optacc.o
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/errors.o from vendor/hmmer/src/errors.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/errors.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/errors.o
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/evalues.o from vendor/hmmer/src/evalues.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/evalues.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/evalues.o
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/generic_stotrace.o from vendor/hmmer/src/generic_stotrace.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/generic_stotrace.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/generic_stotrace.o
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/eweight.o from vendor/hmmer/src/eweight.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/eweight.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/eweight.o
  vendor/hmmer/src/generic_stotrace.c: In function ‘p7_GStochasticTrace’:
  vendor/hmmer/src/generic_stotrace.c:172:21: warning: ‘scur’ may be used uninitialized [-Wmaybe-uninitialized]
    172 |       if ((status = p7_trace_Append(tr, scur, k, i)) != eslOK) goto ERROR;
        |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/generic_stotrace.c:57:11: note: ‘scur’ was declared here
     57 |   int     scur, sprv;
        |           ^~~~
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/generic_decoding.o from vendor/hmmer/src/generic_decoding.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/generic_decoding.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/generic_decoding.o
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/generic_viterbi.o from vendor/hmmer/src/generic_viterbi.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/generic_viterbi.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/generic_viterbi.o
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/generic_fwdback.o from vendor/hmmer/src/generic_fwdback.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/generic_fwdback.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/generic_fwdback.o
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/generic_vtrace.o from vendor/hmmer/src/generic_vtrace.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/generic_vtrace.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/generic_vtrace.o
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/heatmap.o from vendor/hmmer/src/heatmap.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/heatmap.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/heatmap.o
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/h2_io.o from vendor/hmmer/src/h2_io.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/h2_io.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/h2_io.o
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/hmmlogo.o from vendor/hmmer/src/hmmlogo.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/hmmlogo.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/hmmlogo.o
  vendor/hmmer/src/h2_io.c: In function ‘h2_multiline’:
  vendor/hmmer/src/h2_io.c:213:47: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    213 |         if (fwrite(sptr, sizeof(char), n, fp) != n) ESL_EXCEPTION_SYS(eslEWRITE, "h2 profile write failed");   /* using fwrite lets us write fixed # of chars   */
        |                                               ^~
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/logsum.o from vendor/hmmer/src/logsum.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/logsum.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/logsum.o
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/hmmdmstr.o from vendor/hmmer/src/hmmdmstr.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/hmmdmstr.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/hmmdmstr.o
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/hmmdmstr_shard.o from vendor/hmmer/src/hmmdmstr_shard.c
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/modelconfig.o from vendor/hmmer/src/modelconfig.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/hmmdmstr_shard.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/hmmdmstr_shard.o
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/modelconfig.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/modelconfig.o
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/hmmd_search_status.o from vendor/hmmer/src/hmmd_search_status.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/hmmd_search_status.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/hmmd_search_status.o
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/hmmdwrkr.o from vendor/hmmer/src/hmmdwrkr.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/hmmdwrkr.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/hmmdwrkr.o
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/hmmdwrkr_shard.o from vendor/hmmer/src/hmmdwrkr_shard.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/hmmdwrkr_shard.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/hmmdwrkr_shard.o
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/hmmdutils.o from vendor/hmmer/src/hmmdutils.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/hmmdutils.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/hmmdutils.o
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/hmmer.o from vendor/hmmer/src/hmmer.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/hmmer.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/hmmer.o
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/modelstats.o from vendor/hmmer/src/modelstats.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/modelstats.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/modelstats.o
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_domain.o from vendor/hmmer/src/p7_domain.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/p7_domain.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_domain.o
  vendor/hmmer/src/p7_domain.c: In function ‘p7_domain_Serialize’:
  vendor/hmmer/src/p7_domain.c:228:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    228 |   network_32bit = esl_hton32(*((uint32_t *) &(obj->envsc)));  // ow, this hurts, but is probably the best way to get the
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_domain.c:235:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    235 |   network_32bit = esl_hton32(*((uint32_t *) &(obj->domcorrection)));
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_domain.c:240:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    240 |   network_32bit = esl_hton32(*((uint32_t *) &(obj->dombias)));
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_domain.c:245:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    245 |   network_32bit = esl_hton32(*((uint32_t *) &(obj->oasc)));
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_domain.c:250:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    250 |   network_32bit = esl_hton32(*((uint32_t *) &(obj->bitscore)));
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_domain.c:255:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    255 |   network_64bit = esl_hton64(*((uint64_t *) &(obj->lnP)));
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_domain.c: In function ‘p7_domain_Deserialize’:
  vendor/hmmer/src/p7_domain.c:379:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    379 |   ret_obj->envsc = *((float *) &host_32bit);
        |                     ~^~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_domain.c:385:30: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    385 |   ret_obj->domcorrection = *((float *) &host_32bit);
        |                             ~^~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_domain.c:391:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    391 |   ret_obj->dombias = *((float *) &host_32bit);
        |                       ~^~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_domain.c:397:21: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    397 |   ret_obj->oasc = *((float *) &host_32bit);
        |                    ~^~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_domain.c:403:25: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    403 |   ret_obj->bitscore = *((float *) &host_32bit);
        |                        ~^~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_domain.c:409:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    409 |   ret_obj->lnP = *((double *) &host_64bit);
        |                   ~^~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_domain.c:436:38: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    436 |       ret_obj->scores_per_pos[i] = *((float *) &host_32bit);
        |                                     ~^~~~~~~~~~~~~~~~~~~~~~
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/mpisupport.o from vendor/hmmer/src/mpisupport.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/mpisupport.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/mpisupport.o
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/seqmodel.o from vendor/hmmer/src/seqmodel.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/seqmodel.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/seqmodel.o
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/tracealign.o from vendor/hmmer/src/tracealign.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/tracealign.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/tracealign.o
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_domaindef.o from vendor/hmmer/src/p7_domaindef.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/p7_domaindef.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_domaindef.o
  vendor/hmmer/src/p7_domaindef.c: In function ‘rescore_isolated_domain’:
  vendor/hmmer/src/p7_domaindef.c:932:5: warning: ‘orig_L’ may be used uninitialized [-Wmaybe-uninitialized]
    932 |     p7_oprofile_ReconfigRestLength(om, orig_L);
        |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_domaindef.c:827:18: note: ‘orig_L’ was declared here
    827 |   int            orig_L;
        |                  ^~~~~~
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_gbands.o from vendor/hmmer/src/p7_gbands.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/p7_gbands.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_gbands.o
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_alidisplay.o from vendor/hmmer/src/p7_alidisplay.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/p7_alidisplay.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_alidisplay.o
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_gmx.o from vendor/hmmer/src/p7_gmx.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/p7_gmx.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_gmx.o
  In file included from vendor/hmmer/src/hmmer.h:42,
                   from vendor/hmmer/src/p7_gmx.c:11:
  vendor/hmmer/src/p7_gmx.c: In function ‘p7_gmx_GrowTo’:
  vendor/easel/easel.h:431:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    431 | #define ESL_MIN(a,b)          (((a)<(b))?(a):(b))
        |                                    ^
  vendor/hmmer/src/p7_gmx.c:144:20: note: in expansion of macro ‘ESL_MIN’
    144 |       gx->validR = ESL_MIN(gx->ncells / gx->allocW, gx->allocR);
        |                    ^~~~~~~
  vendor/easel/easel.h:431:46: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long unsigned int’} due to unsignedness of other operand [-Wsign-compare]
    431 | #define ESL_MIN(a,b)          (((a)<(b))?(a):(b))
        |                                              ^~~
  vendor/hmmer/src/p7_gmx.c:144:20: note: in expansion of macro ‘ESL_MIN’
    144 |       gx->validR = ESL_MIN(gx->ncells / gx->allocW, gx->allocR);
        |                    ^~~~~~~
  vendor/hmmer/src/p7_alidisplay.c: In function ‘p7_alidisplay_Deserialize’:
  vendor/hmmer/src/p7_alidisplay.c:725:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
    725 |   if(ret_obj->memsize < (obj_size - SER_BASE_SIZE)){  // ret_obj doesn't have enough space for this P7_ALIDISPLAY
        |                       ^
  vendor/hmmer/src/p7_alidisplay.c:885:29: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘long unsigned int’ [-Wsign-compare]
    885 |   if(mem_ptr - ret_obj->mem != (obj_size - SER_BASE_SIZE)){
        |                             ^~
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_gmxb.o from vendor/hmmer/src/p7_gmxb.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/p7_gmxb.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_gmxb.o
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_gmxchk.o from vendor/hmmer/src/p7_gmxchk.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/p7_gmxchk.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_gmxchk.o
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_hit.o from vendor/hmmer/src/p7_hit.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/p7_hit.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_hit.o
  vendor/hmmer/src/p7_hit.c: In function ‘p7_hit_Serialize’:
  vendor/hmmer/src/p7_hit.c:287:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    287 |   network_64bit = esl_hton64(*((uint64_t *) &(obj->sortkey)));
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_hit.c:292:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    292 |   network_32bit = esl_hton32(*((uint32_t *) &(obj->score)));
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_hit.c:297:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    297 |   network_32bit = esl_hton32(*((uint32_t *) &(obj->pre_score)));
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_hit.c:302:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    302 |   network_32bit = esl_hton32(*((uint32_t *) &(obj->sum_score)));
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_hit.c:307:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    307 |   network_64bit = esl_hton64(*((uint64_t *) &(obj->lnP)));
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_hit.c:312:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    312 |   network_64bit = esl_hton64(*((uint64_t *) &(obj->pre_lnP)));
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_hit.c:317:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    317 |   network_64bit = esl_hton64(*((uint64_t *) &(obj->sum_lnP)));
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_hit.c:322:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    322 |   network_32bit = esl_hton32(*((uint32_t *) &(obj->nexpected)));
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_hit.c: In function ‘p7_hit_Deserialize’:
  vendor/hmmer/src/p7_hit.c:471:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    471 |   ret_obj->sortkey = *((double *) &host_64bit);
        |                       ~^~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_hit.c:477:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    477 |   ret_obj->score = *((float *) &host_32bit);
        |                     ~^~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_hit.c:483:26: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    483 |   ret_obj->pre_score = *((float *) &host_32bit);
        |                         ~^~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_hit.c:489:26: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    489 |   ret_obj->sum_score = *((float *) &host_32bit);
        |                         ~^~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_hit.c:495:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    495 |   ret_obj->lnP = *((double *) &host_64bit);
        |                   ~^~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_hit.c:501:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    501 |   ret_obj->pre_lnP = *((double *) &host_64bit);
        |                       ~^~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_hit.c:507:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    507 |   ret_obj->sum_lnP = *((double *) &host_64bit);
        |                       ~^~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_hit.c:513:26: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    513 |   ret_obj->nexpected = *((float *) &host_32bit);
        |                         ~^~~~~~~~~~~~~~~~~~~~~~
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_hmm.o from vendor/hmmer/src/p7_hmm.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/p7_hmm.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_hmm.o
  vendor/hmmer/src/p7_hmm.c: In function ‘p7_hmm_Validate’:
  vendor/hmmer/src/p7_hmm.c:1282:85: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   1282 |   if (hmm->flags & p7H_RF)   { if (hmm->rf == NULL        || strlen(hmm->rf)        != hmm->M+1) ESL_XFAIL(eslFAIL, errbuf, "p7H_RF flag up, but rf string is invalid");            }
        |                                                                                     ^~
  vendor/hmmer/src/p7_hmm.c:1285:86: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   1285 |   if (hmm->flags & p7H_MMASK) { if (hmm->mm == NULL        || strlen(hmm->mm)        != hmm->M+1) ESL_XFAIL(eslFAIL, errbuf, "p7H_MMASK flag up, but mm string is invalid");            }
        |                                                                                      ^~
  vendor/hmmer/src/p7_hmm.c:1288:85: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   1288 |   if (hmm->flags & p7H_CONS) { if (hmm->consensus == NULL || strlen(hmm->consensus) != hmm->M+1) ESL_XFAIL(eslFAIL, errbuf, "p7H_CONS flag up, but consensus string is invalid");   }
        |                                                                                     ^~
  vendor/hmmer/src/p7_hmm.c:1291:85: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   1291 |   if (hmm->flags & p7H_CS)   { if (hmm->cs == NULL        || strlen(hmm->cs)        != hmm->M+1) ESL_XFAIL(eslFAIL, errbuf, "p7H_CS flag up, but cs string is invalid");   }
        |                                                                                     ^~
  vendor/hmmer/src/p7_hmm.c:1294:85: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   1294 |   if (hmm->flags & p7H_CA)   { if (hmm->ca == NULL        || strlen(hmm->ca)        != hmm->M+1) ESL_XFAIL(eslFAIL, errbuf, "p7H_CA flag up, but ca string is invalid");   }
        |                                                                                     ^~
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_bg.o from vendor/hmmer/src/p7_bg.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/p7_bg.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_bg.o
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_builder.o from vendor/hmmer/src/p7_builder.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/p7_builder.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_builder.o
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_hmmcache.o from vendor/hmmer/src/p7_hmmcache.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/p7_hmmcache.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_hmmcache.o
  vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Sizeof’:
  vendor/hmmer/src/p7_hmmcache.c:111:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    111 |   for (i = 0; i < cache->n; i++)
        |                 ^
  vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_SetNumericNames’:
  vendor/hmmer/src/p7_hmmcache.c:139:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    139 |   for (i = 0; i < cache->n; i++)
        |                 ^
  vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Close’:
  vendor/hmmer/src/p7_hmmcache.c:162:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    162 |       for (i = 0; i < cache->n; i++)
        |                     ^
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_hmmd_search_stats.o from vendor/hmmer/src/p7_hmmd_search_stats.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/p7_hmmd_search_stats.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_hmmd_search_stats.o
  vendor/hmmer/src/p7_hmmd_search_stats.c: In function ‘p7_hmmd_search_stats_Serialize’:
  vendor/hmmer/src/p7_hmmd_search_stats.c:89:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
     89 |   network_64bit = esl_hton64(*((uint64_t *) &(obj->elapsed)));  // ow, this hurts, but is probably the best way to get the
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_hmmd_search_stats.c:97:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
     97 |   network_64bit = esl_hton64(*((uint64_t *) &(obj->user)));
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_hmmd_search_stats.c:103:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    103 |   network_64bit = esl_hton64(*((uint64_t *) &(obj->sys)));
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_hmmd_search_stats.c:109:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    109 |   network_64bit = esl_hton64(*((uint64_t *) &(obj->Z)));
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_hmmd_search_stats.c:115:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    115 |   network_64bit = esl_hton64(*((uint64_t *) &(obj->domZ)));
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_hmmd_search_stats.c:205:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    205 |     for (i = 0; i < obj->nhits; i++)
        |                   ^
  vendor/hmmer/src/p7_hmmd_search_stats.c: In function ‘p7_hmmd_search_stats_Deserialize’:
  vendor/hmmer/src/p7_hmmd_search_stats.c:258:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    258 |   ret_obj->elapsed = *((double *) &host_64bit);
        |                       ~^~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_hmmd_search_stats.c:264:21: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    264 |   ret_obj->user = *((double *) &host_64bit);
        |                    ~^~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_hmmd_search_stats.c:270:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    270 |   ret_obj->sys = *((double *) &host_64bit);
        |                   ~^~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_hmmd_search_stats.c:276:18: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    276 |   ret_obj->Z = *((double *) &host_64bit);
        |                 ~^~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_hmmd_search_stats.c:282:21: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    282 |   ret_obj->domZ = *((double *) &host_64bit);
        |                    ~^~~~~~~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_hmmd_search_stats.c:380:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    380 |     for (i = 1; i < ret_obj->nhits; i++)
        |                   ^
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_hmmwindow.o from vendor/hmmer/src/p7_hmmwindow.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/p7_hmmwindow.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_hmmwindow.o
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_pipeline.o from vendor/hmmer/src/p7_pipeline.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/p7_pipeline.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_pipeline.o
  In file included from vendor/hmmer/src/p7_pipeline.c:15:
  vendor/hmmer/src/p7_pipeline.c: In function ‘p7_pli_postSSV_LongTarget’:
  vendor/easel/easel.h:431:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    431 | #define ESL_MIN(a,b)          (((a)<(b))?(a):(b))
        |                                    ^
  vendor/hmmer/src/p7_pipeline.c:1407:61: note: in expansion of macro ‘ESL_MIN’
   1407 |            p7_hmmwindow_new(vit_windowlist, 0, new_n, 0, 0, ESL_MIN(max_window_len,new_len), 0.0, p7_NOCOMPLEMENT, new_len );
        |                                                             ^~~~~~~
  vendor/easel/easel.h:431:42: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘uint32_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare]
    431 | #define ESL_MIN(a,b)          (((a)<(b))?(a):(b))
        |                                          ^~~
  vendor/hmmer/src/p7_pipeline.c:1407:61: note: in expansion of macro ‘ESL_MIN’
   1407 |            p7_hmmwindow_new(vit_windowlist, 0, new_n, 0, 0, ESL_MIN(max_window_len,new_len), 0.0, p7_NOCOMPLEMENT, new_len );
        |                                                             ^~~~~~~
  vendor/hmmer/src/p7_pipeline.c:1408:27: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
   1408 |          } while (new_len > max_window_len);
        |                           ^
  vendor/hmmer/src/p7_pipeline.c: In function ‘p7_Pipeline_LongTarget’:
  vendor/hmmer/src/p7_pipeline.c:1655:46: warning: operand of ‘?:’ changes signedness from ‘int64_t’ {aka ‘long int’} to ‘uint64_t’ {aka ‘long unsigned int’} due to unsignedness of other operand [-Wsign-compare]
   1655 |             (fmf != NULL ? seq_start       : sq->start),
        |                                              ^~~~~~~~~
  vendor/hmmer/src/p7_pipeline.c:1660:46: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘uint32_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare]
   1660 |             (fmf != NULL ? seq_data.length : -1),
        |                                              ^~
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/hmmpgmd2msa.o from vendor/hmmer/src/hmmpgmd2msa.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/hmmpgmd2msa.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/hmmpgmd2msa.o
  vendor/hmmer/src/hmmpgmd2msa.c: In function ‘hmmpgmd2msa’:
  vendor/hmmer/src/hmmpgmd2msa.c:131:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    131 |   for (i = 0; i < stats->nhits; ++i) {
        |                 ^
  vendor/hmmer/src/hmmpgmd2msa.c:144:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    144 |   for (i=0; i<stats->nhits; i++) {
        |              ^
  vendor/hmmer/src/hmmpgmd2msa.c:163:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    163 |     for (i = 0; i < th->N; i++) {
        |                   ^
  vendor/hmmer/src/hmmpgmd2msa.c:172:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    172 |   for (i = 0; i < th->N; i++) {
        |                 ^
  vendor/hmmer/src/hmmpgmd2msa.c: In function ‘hmmpgmd2stats_old’:
  vendor/hmmer/src/hmmpgmd2msa.c:311:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    311 |   for (i=0; i<stats->nhits; i++) {
        |              ^
  vendor/hmmer/src/hmmpgmd2msa.c:327:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    327 |   for (i = 0; i < th.N; i++)
        |                 ^
  vendor/hmmer/src/hmmpgmd2msa.c:450:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    450 |   for (i = 0; i < th.N; i++) {
        |                 ^
  vendor/hmmer/src/hmmpgmd2msa.c:473:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    473 |   for (i = 0; i < th.N; i++) {
        |                 ^
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/fm_alphabet.o from vendor/hmmer/src/fm_alphabet.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/fm_alphabet.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/fm_alphabet.o
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/fm_general.o from vendor/hmmer/src/fm_general.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/fm_general.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/fm_general.o
  vendor/hmmer/src/fm_general.c: In function ‘fm_findOverlappingAmbiguityBlock’:
  vendor/hmmer/src/fm_general.c:292:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    292 |   if (ranges[lo].lower > end)     return -1;
        |                        ^
  vendor/hmmer/src/fm_general.c:293:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    293 |   if (ranges[hi].upper < start)   return -1;
        |                        ^
  vendor/hmmer/src/fm_general.c:297:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    297 |     if      (ranges[mid].lower   < start)  lo = mid + 1; // too far left
        |                                  ^
  vendor/hmmer/src/fm_general.c:302:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    302 |   if      (lo>0 &&  ranges[lo-1].upper   >= start && ranges[lo-1].lower <= end) return lo-1;
        |                                          ^~
  vendor/hmmer/src/fm_general.c:302:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    302 |   if      (lo>0 &&  ranges[lo-1].upper   >= start && ranges[lo-1].lower <= end) return lo-1;
        |                                                                         ^~
  vendor/hmmer/src/fm_general.c:303:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    303 |   else if (         ranges[lo].upper     >= start && ranges[lo].lower   <= end) return lo;
        |                                          ^~
  vendor/hmmer/src/fm_general.c:303:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    303 |   else if (         ranges[lo].upper     >= start && ranges[lo].lower   <= end) return lo;
        |                                                                         ^~
  vendor/hmmer/src/fm_general.c: In function ‘fm_convertRange2DSQ’:
  vendor/hmmer/src/fm_general.c:350:20: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    350 |         while (pos <= fm->ambig_offset + fm->ambig_cnt -1 && meta->ambig_list->ranges[pos].lower <= first+length-1) {
        |                    ^~
  vendor/hmmer/src/fm_general.c:350:98: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    350 |         while (pos <= fm->ambig_offset + fm->ambig_cnt -1 && meta->ambig_list->ranges[pos].lower <= first+length-1) {
        |                                                                                                  ^~
  In file included from vendor/hmmer/src/fm_general.c:12:
  vendor/easel/easel.h:432:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    432 | #define ESL_MAX(a,b)          (((a)>(b))?(a):(b))
        |                                    ^
  vendor/hmmer/src/fm_general.c:351:23: note: in expansion of macro ‘ESL_MAX’
    351 |           int start = ESL_MAX(first,          meta->ambig_list->ranges[pos].lower);
        |                       ^~~~~~~
  vendor/easel/easel.h:432:46: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long unsigned int’} due to unsignedness of other operand [-Wsign-compare]
    432 | #define ESL_MAX(a,b)          (((a)>(b))?(a):(b))
        |                                              ^~~
  vendor/hmmer/src/fm_general.c:351:23: note: in expansion of macro ‘ESL_MAX’
    351 |           int start = ESL_MAX(first,          meta->ambig_list->ranges[pos].lower);
        |                       ^~~~~~~
  vendor/easel/easel.h:431:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    431 | #define ESL_MIN(a,b)          (((a)<(b))?(a):(b))
        |                                    ^
  vendor/hmmer/src/fm_general.c:352:23: note: in expansion of macro ‘ESL_MIN’
    352 |           int end =   ESL_MIN(first+length-1, meta->ambig_list->ranges[pos].upper);
        |                       ^~~~~~~
  vendor/easel/easel.h:431:46: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long unsigned int’} due to unsignedness of other operand [-Wsign-compare]
    431 | #define ESL_MIN(a,b)          (((a)<(b))?(a):(b))
        |                                              ^~~
  vendor/hmmer/src/fm_general.c:352:23: note: in expansion of macro ‘ESL_MIN’
    352 |           int end =   ESL_MIN(first+length-1, meta->ambig_list->ranges[pos].upper);
        |                       ^~~~~~~
  vendor/hmmer/src/fm_general.c:353:27: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    353 |           for (j= start; j<=end; j++)
        |                           ^~
  vendor/hmmer/src/fm_general.c: In function ‘fm_FM_read’:
  vendor/hmmer/src/fm_general.c:537:75: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int32_t’ {aka ‘int’} [-Wsign-compare]
    537 |      (getAll && fread(fm->T, sizeof(uint8_t), compressed_bytes, meta->fp) != compressed_bytes) ||
        |                                                                           ^~
  vendor/hmmer/src/fm_general.c:538:68: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int32_t’ {aka ‘int’} [-Wsign-compare]
    538 |      (fread(fm->BWT, sizeof(uint8_t), compressed_bytes, meta->fp)  != compressed_bytes) ||
        |                                                                    ^~
  vendor/hmmer/src/fm_general.c: In function ‘fm_readFMmeta’:
  vendor/hmmer/src/fm_general.c:620:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    620 |   for (i=0; i<meta->seq_count; i++) {
        |              ^
  vendor/hmmer/src/fm_general.c:638:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    638 |         fread(meta->seq_data[i].name,   sizeof(char), meta->seq_data[i].name_length+1   , meta->fp) !=  meta->seq_data[i].name_length+1  ||
        |                                                                                                     ^~
  vendor/hmmer/src/fm_general.c:639:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    639 |         fread(meta->seq_data[i].acc,    sizeof(char), meta->seq_data[i].acc_length+1    , meta->fp) !=  meta->seq_data[i].acc_length+1  ||
        |                                                                                                     ^~
  vendor/hmmer/src/fm_general.c:640:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    640 |         fread(meta->seq_data[i].source, sizeof(char), meta->seq_data[i].source_length+1 , meta->fp) !=  meta->seq_data[i].source_length+1  ||
        |                                                                                                     ^~
  vendor/hmmer/src/fm_general.c:641:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    641 |         fread(meta->seq_data[i].desc,   sizeof(char), meta->seq_data[i].desc_length+1   , meta->fp) !=  meta->seq_data[i].desc_length+1
        |                                                                                                     ^~
  vendor/hmmer/src/fm_general.c:651:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    651 |   for (i=0; i<meta->ambig_list->count; i++) {
        |              ^
  vendor/hmmer/src/fm_general.c:663:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    663 |     for (i=0; i<meta->seq_count; i++)
        |                ^
  vendor/hmmer/src/fm_general.c: In function ‘fm_metaDestroy’:
  vendor/hmmer/src/fm_general.c:727:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    727 |     for (i=0; i<meta->seq_count; i++) {
        |                ^
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_prior.o from vendor/hmmer/src/p7_prior.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/p7_prior.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_prior.o
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/fm_sse.o from vendor/hmmer/src/fm_sse.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/fm_sse.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/fm_sse.o
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_profile.o from vendor/hmmer/src/p7_profile.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/p7_profile.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_profile.o
  vendor/hmmer/src/fm_sse.c: In function ‘fm_getOccCount’:
  vendor/hmmer/src/fm_sse.c:201:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    201 |   if (landmark >= fm->N) { // special case: for a count in the final block, just count from the bottom
        |                ^~
  vendor/hmmer/src/fm_sse.c:218:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    218 |   else if ( b_pos !=  sb_pos * (meta->freq_cnt_sb / meta->freq_cnt_b) )
        |                   ^~
  vendor/hmmer/src/fm_sse.c:221:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    221 |   if ( landmark < fm->N || landmark == -1 ) {
        |                 ^
  vendor/hmmer/src/fm_sse.c:342:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    342 |   if (c==0 && pos >= fm->term_loc) { // I overcounted 'A' by one, because '$' was replaced with an 'A'
        |                   ^~
  vendor/hmmer/src/fm_sse.c: In function ‘fm_getOccCountLT’:
  vendor/hmmer/src/fm_sse.c:389:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    389 |   if (landmark >= fm->N) { // special case: for a count in the final block, just count from the bottom
        |                ^~
  vendor/hmmer/src/fm_sse.c:404:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    404 |   } else if ( b_pos !=  sb_pos * (meta->freq_cnt_sb / meta->freq_cnt_b))  {
        |                     ^~
  vendor/hmmer/src/fm_sse.c:413:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    413 |   if ( landmark < fm->N - 1 || landmark == -1 ) {
        |                 ^
  vendor/hmmer/src/fm_sse.c:610:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    610 |   if ( pos >= fm->term_loc) {
        |            ^~
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_spensemble.o from vendor/hmmer/src/p7_spensemble.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/p7_spensemble.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_spensemble.o
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/fm_ssv.o from vendor/hmmer/src/fm_ssv.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/fm_ssv.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/fm_ssv.o
  vendor/hmmer/src/fm_ssv.c: In function ‘FM_mergeSeeds’:
  vendor/hmmer/src/fm_ssv.c:70:33: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
     70 |           && ( next.n - next.k) == curr_diagval                 //overlapping diagonals will share the same value of (n - k)
        |                                 ^~
  vendor/hmmer/src/fm_ssv.c:71:35: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
     71 |           && next.n + next.length < curr_n + curr_len + ssv_length       //overlapping, or close to it
        |                                   ^
  vendor/hmmer/src/fm_ssv.c: In function ‘FM_backtrackSeed’:
  vendor/hmmer/src/fm_ssv.c:134:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    134 |   while ( j != fmf->term_loc && (j % fm_cfg->meta->freq_SA)) { //go until we hit a position in the full SA that was sampled during FM index construction
        |             ^~
  vendor/hmmer/src/fm_ssv.c:141:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
    141 |   return len + (j==fmf->term_loc ? 0 : fmf->SA[ j / fm_cfg->meta->freq_SA ]) ; // len is how many backward steps we had to take to find a sampled SA position
        |                  ^~
  vendor/hmmer/src/fm_ssv.c: In function ‘FM_extendSeed’:
  vendor/hmmer/src/fm_ssv.c:664:18: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long int’} and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    664 |   if (target_end > fm->N-2) {
        |                  ^
  vendor/hmmer/src/fm_ssv.c:678:14: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘int32_t’ {aka ‘int’} [-Wsign-compare]
    678 |   for (  ; k <= model_end; k++, n++) {
        |              ^~
  In file included from vendor/hmmer/src/p7_spensemble.c:7:
  vendor/hmmer/src/p7_spensemble.c: In function ‘p7_spensemble_Cluster’:
  vendor/hmmer/src/p7_spensemble.c:344:43: warning: ‘imax’ may be used uninitialized [-Wmaybe-uninitialized]
    344 |       cwindow_width = ESL_MAX(ESL_MAX(imax-imin+1, jmax-jmin+1),
        |                                       ~~~~^~~~~
  vendor/hmmer/src/p7_spensemble.c:294:7: note: ‘imax’ was declared here
    294 |   int imax, jmax, kmax, mmax;
        |       ^~~~
  vendor/hmmer/src/p7_spensemble.c:344:56: warning: ‘jmin’ may be used uninitialized [-Wmaybe-uninitialized]
    344 |       cwindow_width = ESL_MAX(ESL_MAX(imax-imin+1, jmax-jmin+1),
        |                                                    ~~~~^~~~~
  vendor/hmmer/src/p7_spensemble.c:293:13: note: ‘jmin’ was declared here
    293 |   int imin, jmin, kmin, mmin;
        |             ^~~~
  vendor/hmmer/src/p7_spensemble.c:345:43: warning: ‘kmin’ may be used uninitialized [-Wmaybe-uninitialized]
    345 |                               ESL_MAX(kmax-kmin+1, mmax-mmin+1));
        |                                       ~~~~^~~~~
  vendor/hmmer/src/p7_spensemble.c:293:19: note: ‘kmin’ was declared here
    293 |   int imin, jmin, kmin, mmin;
        |                   ^~~~
  vendor/hmmer/src/p7_spensemble.c:345:56: warning: ‘mmin’ may be used uninitialized [-Wmaybe-uninitialized]
    345 |                               ESL_MAX(kmax-kmin+1, mmax-mmin+1));
        |                                                    ~~~~^~~~~
  vendor/hmmer/src/p7_spensemble.c:293:25: note: ‘mmin’ was declared here
    293 |   int imin, jmin, kmin, mmin;
        |                         ^~~~
  vendor/hmmer/src/p7_spensemble.c:344:56: warning: ‘jmax’ may be used uninitialized [-Wmaybe-uninitialized]
    344 |       cwindow_width = ESL_MAX(ESL_MAX(imax-imin+1, jmax-jmin+1),
        |                                                    ~~~~^~~~~
  vendor/hmmer/src/p7_spensemble.c:294:13: note: ‘jmax’ was declared here
    294 |   int imax, jmax, kmax, mmax;
        |             ^~~~
  vendor/hmmer/src/p7_spensemble.c:345:43: warning: ‘kmax’ may be used uninitialized [-Wmaybe-uninitialized]
    345 |                               ESL_MAX(kmax-kmin+1, mmax-mmin+1));
        |                                       ~~~~^~~~~
  vendor/hmmer/src/p7_spensemble.c:294:19: note: ‘kmax’ was declared here
    294 |   int imax, jmax, kmax, mmax;
        |                   ^~~~
  vendor/hmmer/src/p7_spensemble.c:345:56: warning: ‘mmax’ may be used uninitialized [-Wmaybe-uninitialized]
    345 |                               ESL_MAX(kmax-kmin+1, mmax-mmin+1));
        |                                                    ~~~~^~~~~
  vendor/hmmer/src/p7_spensemble.c:294:25: note: ‘mmax’ was declared here
    294 |   int imax, jmax, kmax, mmax;
        |                         ^~~~
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_tophits.o from vendor/hmmer/src/p7_tophits.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/p7_tophits.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_tophits.o
  In function ‘FM_extendSeed’,
      inlined from ‘p7_SSVFM_longlarget’ at vendor/hmmer/src/fm_ssv.c:808:5:
  vendor/hmmer/src/fm_ssv.c:695:32: warning: ‘max_hit_start’ may be used uninitialized [-Wmaybe-uninitialized]
    695 |   diag->k       = model_start  + max_hit_start - 1;
        |                   ~~~~~~~~~~~~~^~~~~~~~~~~~~~~
  vendor/hmmer/src/fm_ssv.c: In function ‘p7_SSVFM_longlarget’:
  vendor/hmmer/src/fm_ssv.c:647:22: note: ‘max_hit_start’ was declared here
    647 |   int64_t hit_start, max_hit_start, max_hit_end;
        |                      ^~~~~~~~~~~~~
  In function ‘FM_extendSeed’,
      inlined from ‘p7_SSVFM_longlarget’ at vendor/hmmer/src/fm_ssv.c:808:5:
  vendor/hmmer/src/fm_ssv.c:696:31: warning: ‘max_hit_end’ may be used uninitialized [-Wmaybe-uninitialized]
    696 |   diag->length  = max_hit_end - max_hit_start + 1;
        |                   ~~~~~~~~~~~~^~~~~~~~~~~~~~~
  vendor/hmmer/src/fm_ssv.c: In function ‘p7_SSVFM_longlarget’:
  vendor/hmmer/src/fm_ssv.c:647:37: note: ‘max_hit_end’ was declared here
    647 |   int64_t hit_start, max_hit_start, max_hit_end;
        |                                     ^~~~~~~~~~~
  vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_Clone’:
  vendor/hmmer/src/p7_tophits.c:92:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
     92 |   for (i = 0; i < h2->N; i++) {
        |                 ^
  vendor/hmmer/src/p7_tophits.c:100:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    100 |   for (i = 0; i < h2->N; i++) {
        |                 ^
  vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_Grow’:
  vendor/hmmer/src/p7_tophits.c:143:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    143 |       for (i = 0; i < h->N; i++)
        |                     ^
  vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_SortBySortkey’:
  vendor/hmmer/src/p7_tophits.c:398:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    398 |   for (i = 0; i < h->N; i++) h->hit[i] = h->unsrt + i;
        |                 ^
  vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_SortBySeqidxAndAlipos’:
  vendor/hmmer/src/p7_tophits.c:431:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    431 |   for (i = 0; i < h->N; i++) h->hit[i] = h->unsrt + i;
        |                 ^
  vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_SortByModelnameAndAlipos’:
  vendor/hmmer/src/p7_tophits.c:452:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    452 |   for (i = 0; i < h->N; i++) h->hit[i] = h->unsrt + i;
        |                 ^
  vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_Merge’:
  vendor/hmmer/src/p7_tophits.c:496:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    496 |   for (i = 0; i < h1->N; i++)
        |                 ^
  vendor/hmmer/src/p7_tophits.c:504:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    504 |   for (i=0,j=0,k=0; i < h1->N && j < h2->N ; k++)
        |                       ^
  vendor/hmmer/src/p7_tophits.c:504:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    504 |   for (i=0,j=0,k=0; i < h1->N && j < h2->N ; k++)
        |                                    ^
  vendor/hmmer/src/p7_tophits.c:506:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    506 |   while (i < h1->N) new_hit[k++] = h1->hit[i++];
        |            ^
  vendor/hmmer/src/p7_tophits.c:507:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    507 |   while (j < h2->N) new_hit[k++] = new2 + (h2->hit[j++] - h2->unsrt);
        |            ^
  vendor/hmmer/src/p7_tophits.c:511:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    511 |   for (i = 0; i < h2->N; i++)
        |                 ^
  vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_GetMaxPositionLength’:
  vendor/hmmer/src/p7_tophits.c:559:17: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long int’} and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    559 |   for (i = 0; i < h->N; i++) {
        |                 ^
  vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_GetMaxNameLength’:
  vendor/hmmer/src/p7_tophits.c:589:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    589 |   for (max = 0, i = 0; i < h->N; i++)
        |                          ^
  vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_GetMaxAccessionLength’:
  vendor/hmmer/src/p7_tophits.c:608:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    608 |   for (max = 0, i = 0; i < h->N; i++)
        |                          ^
  vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_GetMaxShownLength’:
  vendor/hmmer/src/p7_tophits.c:630:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    630 |   for (max = 0, i = 0; i < h->N; i++)
        |                          ^
  vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_Reuse’:
  vendor/hmmer/src/p7_tophits.c:663:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    663 |     for (i = 0; i < h->N; i++)
        |                   ^
  vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_Destroy’:
  vendor/hmmer/src/p7_tophits.c:693:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    693 |     for (i = 0; i < h->N; i++)
        |                   ^
  vendor/hmmer/src/p7_tophits.c: In function ‘workaround_bug_h74’:
  vendor/hmmer/src/p7_tophits.c:762:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    762 |   for (h = 0; h < th->N; h++)
        |                 ^
  vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_ComputeNhmmerEvalues’:
  vendor/hmmer/src/p7_tophits.c:800:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    800 |   for (i = 0; i < th->N ; i++)
        |                 ^
  vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_RemoveDuplicates’:
  vendor/hmmer/src/p7_tophits.c:836:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    836 |   for (i = 1; i < th->N; i++)
        |                 ^
  vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_Threshold’:
  vendor/hmmer/src/p7_tophits.c:935:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    935 |     for (h = 0; h < th->N; h++)
        |                   ^
  vendor/hmmer/src/p7_tophits.c:956:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    956 |   for (h = 0; h < th->N; h++)
        |                 ^
  vendor/hmmer/src/p7_tophits.c:974:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    974 |     for (h = 0; h < th->N; h++)
        |                   ^
  vendor/hmmer/src/p7_tophits.c:991:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
    991 |   for (h = 0; h < th->N; h++) {
        |                 ^
  vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_CompareRanking’:
  vendor/hmmer/src/p7_tophits.c:1069:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1069 |   for (h = 0; h < th->N; h++)
        |                 ^
  vendor/hmmer/src/p7_tophits.c:1085:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1085 |   for (h = 0; h < th->N; h++)
        |                 ^
  vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_Targets’:
  vendor/hmmer/src/p7_tophits.c:1173:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1173 |   for (h = 0; h < th->N; h++)
        |                 ^
  vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_Domains’:
  vendor/hmmer/src/p7_tophits.c:1289:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1289 |   for (h = 0; h < th->N; h++)
        |                 ^
  vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_Alignment’:
  vendor/hmmer/src/p7_tophits.c:1528:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1528 |   for (h = 0; h < th->N; h++)
        |                 ^
  vendor/hmmer/src/p7_tophits.c:1554:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1554 |   for (h = 0; h < th->N; h++)
        |                 ^
  vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_TabularTargets’:
  vendor/hmmer/src/p7_tophits.c:1643:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1643 |   for (h = 0; h < th->N; h++)
        |                 ^
  vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_TabularDomains’:
  vendor/hmmer/src/p7_tophits.c:1736:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1736 |   for (h = 0; h < th->N; h++)
        |                 ^
  vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_TabularXfam’:
  vendor/hmmer/src/p7_tophits.c:1838:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1838 |     for (h = 0; h < th->N; h++)
        |                   ^
  vendor/hmmer/src/p7_tophits.c:1872:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1872 |       for (h = 0; h < th->N; h++)
        |                     ^
  vendor/hmmer/src/p7_tophits.c:1893:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1893 |       for (h = 0; h < th->N; h++)
        |                     ^
  vendor/hmmer/src/p7_tophits.c:1927:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1927 |       for (h = 0; h < domHitlist->N; h++)
        |                     ^
  vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_AliScores’:
  vendor/hmmer/src/p7_tophits.c:1980:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   1980 |   for (h = 0; h < th->N; h++) {
        |                 ^
  generating build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/p7_hmmfile.o from build/temp.linux-x86_64-cpython-312/p7_hmmfile.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/p7_hmmfile.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/p7_hmmfile.o
  build/temp.linux-x86_64-cpython-312/p7_hmmfile.c: In function ‘p7_hmmfile_WriteBinary’:
  build/temp.linux-x86_64-cpython-312/p7_hmmfile.c:1026:70: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   1026 |     if (fwrite((char *) hmm->mat[k], sizeof(float), hmm->abc->K, fp) != hmm->abc->K) ESL_EXCEPTION_SYS(eslEWRITE, "hmm binary write failed");
        |                                                                      ^~
  build/temp.linux-x86_64-cpython-312/p7_hmmfile.c:1028:70: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   1028 |     if (fwrite((char *) hmm->ins[k], sizeof(float), hmm->abc->K, fp) != hmm->abc->K) ESL_EXCEPTION_SYS(eslEWRITE, "hmm binary write failed");
        |                                                                      ^~
  build/temp.linux-x86_64-cpython-312/p7_hmmfile.c:1037:95: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   1037 |   if ((hmm->flags & p7H_RF)   && (fwrite((char *) hmm->rf,        sizeof(char), hmm->M+2, fp) != hmm->M+2)) ESL_EXCEPTION_SYS(eslEWRITE, "hmm binary write failed"); /* +2: 1..M and trailing \0 */
        |                                                                                               ^~
  build/temp.linux-x86_64-cpython-312/p7_hmmfile.c:1038:95: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   1038 |   if ((hmm->flags & p7H_MMASK)&& (fwrite((char *) hmm->mm,        sizeof(char), hmm->M+2, fp) != hmm->M+2)) ESL_EXCEPTION_SYS(eslEWRITE, "hmm binary write failed"); /* +2: 1..M and trailing \0 */
        |                                                                                               ^~
  build/temp.linux-x86_64-cpython-312/p7_hmmfile.c:1039:95: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   1039 |   if ((hmm->flags & p7H_CONS) && (fwrite((char *) hmm->consensus, sizeof(char), hmm->M+2, fp) != hmm->M+2)) ESL_EXCEPTION_SYS(eslEWRITE, "hmm binary write failed"); /* don't need to test for >=3e format; p7H_CONS flag suffices (didn't exist pre-3e) */
        |                                                                                               ^~
  build/temp.linux-x86_64-cpython-312/p7_hmmfile.c:1040:95: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   1040 |   if ((hmm->flags & p7H_CS)   && (fwrite((char *) hmm->cs,        sizeof(char), hmm->M+2, fp) != hmm->M+2)) ESL_EXCEPTION_SYS(eslEWRITE, "hmm binary write failed");
        |                                                                                               ^~
  build/temp.linux-x86_64-cpython-312/p7_hmmfile.c:1041:95: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   1041 |   if ((hmm->flags & p7H_CA)   && (fwrite((char *) hmm->ca,        sizeof(char), hmm->M+2, fp) != hmm->M+2)) ESL_EXCEPTION_SYS(eslEWRITE, "hmm binary write failed");
        |                                                                                               ^~
  build/temp.linux-x86_64-cpython-312/p7_hmmfile.c:1047:95: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   1047 |   if ((hmm->flags & p7H_MAP)  && (fwrite((char *) hmm->map,       sizeof(int),  hmm->M+1, fp) != hmm->M+1)) ESL_EXCEPTION_SYS(eslEWRITE, "hmm binary write failed");
        |                                                                                               ^~
  build/temp.linux-x86_64-cpython-312/p7_hmmfile.c:1064:96: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   1064 |   if ((hmm->flags & p7H_COMPO) && (fwrite((char *) hmm->compo, sizeof(float), hmm->abc->K, fp) != hmm->abc->K)) ESL_EXCEPTION_SYS(eslEWRITE, "hmm binary write failed");
        |                                                                                                ^~
  build/temp.linux-x86_64-cpython-312/p7_hmmfile.c: In function ‘multiline’:
  build/temp.linux-x86_64-cpython-312/p7_hmmfile.c:2022:44: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   2022 |   if (fwrite(sptr, sizeof(char), n, fp)    != n) ESL_EXCEPTION_SYS(eslEWRITE, "hmm write failed");  /* using fwrite lets us write fixed # of chars   */
        |                                            ^~
  build/temp.linux-x86_64-cpython-312/p7_hmmfile.c: In function ‘write_bin_string’:
  build/temp.linux-x86_64-cpython-312/p7_hmmfile.c:2145:56: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   2145 |       if (fwrite((char *) s,    sizeof(char), len, fp) != len) ESL_EXCEPTION_SYS(eslEWRITE, "hmm binary write failed");
        |                                                        ^~
  In file included from /usr/include/stdio.h:980,
                   from vendor/easel/easel.h:22,
                   from vendor/hmmer/src/p7_tophits.c:16:
  In function ‘fprintf’,
      inlined from ‘p7_tophits_Targets’ at vendor/hmmer/src/p7_tophits.c:1200:12:
  /usr/include/bits/stdio2.h:79:10: warning: ‘posw’ may be used uninitialized [-Wmaybe-uninitialized]
     79 |   return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
        |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     80 |                         __va_arg_pack ());
        |                         ~~~~~~~~~~~~~~~~~
  vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_Targets’:
  vendor/hmmer/src/p7_tophits.c:1126:10: note: ‘posw’ was declared here
   1126 |   int    posw;
        |          ^~~~
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_trace.o from vendor/hmmer/src/p7_trace.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/p7_trace.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_trace.o
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/impl_sse/decoding.o from vendor/hmmer/src/impl_sse/decoding.c
  creating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/impl_sse
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/impl_sse/decoding.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/impl_sse/decoding.o
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_scoredata.o from vendor/hmmer/src/p7_scoredata.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/p7_scoredata.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_scoredata.o
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/impl_sse/mpi.o from vendor/hmmer/src/impl_sse/mpi.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/impl_sse/mpi.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/impl_sse/mpi.o
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/impl_sse/msvfilter.o from vendor/hmmer/src/impl_sse/msvfilter.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/impl_sse/msvfilter.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/impl_sse/msvfilter.o
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/impl_sse/fwdback.o from vendor/hmmer/src/impl_sse/fwdback.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/impl_sse/fwdback.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/impl_sse/fwdback.o
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/impl_sse/null2.o from vendor/hmmer/src/impl_sse/null2.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/impl_sse/null2.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/impl_sse/null2.o
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/impl_sse/io.o from vendor/hmmer/src/impl_sse/io.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/impl_sse/io.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/impl_sse/io.o
  vendor/hmmer/src/impl_sse/io.c: In function ‘p7_oprofile_Write’:
  vendor/hmmer/src/impl_sse/io.c:101:77: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    101 |   if (fwrite((char *) om->name,         sizeof(char),     n+1,         ffp) != n+1)         ESL_EXCEPTION_SYS(eslEWRITE, "oprofile write failed");
        |                                                                             ^~
  vendor/hmmer/src/impl_sse/io.c:111:77: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    111 |     if (fwrite( (char *) om->sbv[x],    sizeof(__m128i),  Q16x,        ffp) != Q16x)        ESL_EXCEPTION_SYS(eslEWRITE, "oprofile write failed");
        |                                                                             ^~
  vendor/hmmer/src/impl_sse/io.c:114:77: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    114 |     if (fwrite( (char *) om->rbv[x],    sizeof(__m128i),  Q16,         ffp) != Q16)         ESL_EXCEPTION_SYS(eslEWRITE, "oprofile write failed");
        |                                                                             ^~
  vendor/hmmer/src/impl_sse/io.c:126:77: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    126 |   if (fwrite((char *) om->name,         sizeof(char),     n+1,         pfp) != n+1)         ESL_EXCEPTION_SYS(eslEWRITE, "oprofile write failed");
        |                                                                             ^~
  vendor/hmmer/src/impl_sse/io.c:134:77: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    134 |     if (fwrite((char *) om->acc,        sizeof(char),     n+1,         pfp) != n+1)         ESL_EXCEPTION_SYS(eslEWRITE, "oprofile write failed");
        |                                                                             ^~
  vendor/hmmer/src/impl_sse/io.c:143:77: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    143 |     if (fwrite((char *) om->desc,       sizeof(char),     n+1,         pfp) != n+1)         ESL_EXCEPTION_SYS(eslEWRITE, "oprofile write failed");
        |                                                                             ^~
  vendor/hmmer/src/impl_sse/io.c:146:77: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    146 |   if (fwrite((char *) om->rf,           sizeof(char),     om->M+2,     pfp) != om->M+2)     ESL_EXCEPTION_SYS(eslEWRITE, "oprofile write failed");
        |                                                                             ^~
  vendor/hmmer/src/impl_sse/io.c:147:77: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    147 |   if (fwrite((char *) om->mm,           sizeof(char),     om->M+2,     pfp) != om->M+2)     ESL_EXCEPTION_SYS(eslEWRITE, "oprofile write failed");
        |                                                                             ^~
  vendor/hmmer/src/impl_sse/io.c:148:77: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    148 |   if (fwrite((char *) om->cs,           sizeof(char),     om->M+2,     pfp) != om->M+2)     ESL_EXCEPTION_SYS(eslEWRITE, "oprofile write failed");
        |                                                                             ^~
  vendor/hmmer/src/impl_sse/io.c:149:77: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    149 |   if (fwrite((char *) om->consensus,    sizeof(char),     om->M+2,     pfp) != om->M+2)     ESL_EXCEPTION_SYS(eslEWRITE, "oprofile write failed");
        |                                                                             ^~
  vendor/hmmer/src/impl_sse/io.c:152:80: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    152 |   if (fwrite((char *) om->twv,             sizeof(__m128i),  8*Q8,        pfp) != 8*Q8)        ESL_EXCEPTION_SYS(eslEWRITE, "oprofile write failed");
        |                                                                                ^~
  vendor/hmmer/src/impl_sse/io.c:154:80: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    154 |     if (fwrite( (char *) om->rwv[x],       sizeof(__m128i),  Q8,          pfp) != Q8)          ESL_EXCEPTION_SYS(eslEWRITE, "oprofile write failed");
        |                                                                                ^~
  vendor/hmmer/src/impl_sse/io.c:163:77: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    163 |   if (fwrite((char *) om->tfv,          sizeof(__m128),   8*Q4,        pfp) != 8*Q4)        ESL_EXCEPTION_SYS(eslEWRITE, "oprofile write failed");
        |                                                                             ^~
  vendor/hmmer/src/impl_sse/io.c:165:77: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
    165 |     if (fwrite( (char *) om->rfv[x],    sizeof(__m128),   Q4,          pfp) != Q4)          ESL_EXCEPTION_SYS(eslEWRITE, "oprofile write failed");
        |                                                                             ^~
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/impl_sse/optacc.o from vendor/hmmer/src/impl_sse/optacc.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/impl_sse/optacc.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/impl_sse/optacc.o
  In function ‘get_postprob’,
      inlined from ‘p7_OATrace’ at vendor/hmmer/src/impl_sse/optacc.c:254:18:
  vendor/hmmer/src/impl_sse/optacc.c:269:21: warning: ‘kmax’ may be used uninitialized [-Wmaybe-uninitialized]
    269 |   int     q     = (k-1) % Q;            /* (q,r) is position of the current DP cell M(i,k) */
        |                   ~~^~~
  vendor/hmmer/src/impl_sse/optacc.c: In function ‘p7_OATrace’:
  vendor/hmmer/src/impl_sse/optacc.c:396:16: note: ‘kmax’ was declared here
    396 |   int    smax, kmax;
        |                ^~~~
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/impl_sse/p7_omx.o from vendor/hmmer/src/impl_sse/p7_omx.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/impl_sse/p7_omx.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/impl_sse/p7_omx.o
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/impl_sse/p7_oprofile.o from vendor/hmmer/src/impl_sse/p7_oprofile.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/impl_sse/p7_oprofile.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/impl_sse/p7_oprofile.o
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/impl_sse/ssvfilter.o from vendor/hmmer/src/impl_sse/ssvfilter.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/impl_sse/ssvfilter.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/impl_sse/ssvfilter.o
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/impl_sse/stotrace.o from vendor/hmmer/src/impl_sse/stotrace.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/impl_sse/stotrace.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/impl_sse/stotrace.o
  generating build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/impl_sse/vitfilter.o from vendor/hmmer/src/impl_sse/vitfilter.c
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -msse4.1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-x86_64-cpython-312 -I/usr/include/python3.12 -c vendor/hmmer/src/impl_sse/vitfilter.c -o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/impl_sse/vitfilter.o
  ar rcs build/temp.linux-x86_64-cpython-312/libhmmer.a build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/build.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/cachedb.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/cachedb_shard.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/emit.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/errors.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/evalues.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/eweight.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/generic_decoding.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/generic_fwdback.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/generic_fwdback_chk.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/generic_fwdback_banded.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/generic_null2.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/generic_msv.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/generic_optacc.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/generic_stotrace.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/generic_viterbi.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/generic_vtrace.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/h2_io.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/heatmap.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/hmmlogo.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/hmmdmstr.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/hmmdmstr_shard.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/hmmd_search_status.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/hmmdwrkr.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/hmmdwrkr_shard.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/hmmdutils.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/hmmer.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/logsum.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/modelconfig.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/modelstats.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/mpisupport.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/seqmodel.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/tracealign.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_alidisplay.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_bg.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_builder.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_domain.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_domaindef.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_gbands.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_gmx.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_gmxb.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_gmxchk.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_hit.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_hmm.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_hmmcache.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_hmmd_search_stats.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_hmmwindow.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_pipeline.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_prior.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_profile.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_spensemble.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_tophits.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_trace.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/p7_scoredata.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/hmmpgmd2msa.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/fm_alphabet.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/fm_general.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/fm_sse.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/fm_ssv.o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/p7_hmmfile.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/impl_sse/decoding.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/impl_sse/fwdback.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/impl_sse/io.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/impl_sse/mpi.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/impl_sse/msvfilter.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/impl_sse/null2.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/impl_sse/optacc.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/impl_sse/p7_omx.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/impl_sse/p7_oprofile.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/impl_sse/ssvfilter.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/impl_sse/stotrace.o build/temp.linux-x86_64-cpython-312/vendor/hmmer/src/impl_sse/vitfilter.o
  running build_ext
  Building HMMER with SSE for CPU architecture: 'x86_64'
  performance hint: pyhmmer/exceptions.pxi:45:5: Exception check on '_py_handler' will always require the GIL to be acquired.
  Possible solutions:
        1. Declare '_py_handler' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
        2. Use an 'int' return type on '_py_handler' to allow an error code to be returned.
  performance hint: pyhmmer/exceptions.pxi:45:5: Exception check on '_py_handler' will always require the GIL to be acquired.
  Possible solutions:
        1. Declare '_py_handler' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
        2. Use an 'int' return type on '_py_handler' to allow an error code to be returned.
  Compiling pyhmmer/errors.pyx because it changed.
  Compiling pyhmmer/easel.pyx because it changed.
  Compiling pyhmmer/plan7.pyx because it changed.
  Compiling pyhmmer/daemon.pyx because it changed.
  [1/4] Cythonizing pyhmmer/daemon.pyx
  [2/4] Cythonizing pyhmmer/easel.pyx
  [3/4] Cythonizing pyhmmer/errors.pyx
  [4/4] Cythonizing pyhmmer/plan7.pyx
  checking whether `PyInterpreterState_GetID` is available
  creating builddir
  creating builddir/build
  creating builddir/build/BUILD
  creating builddir/build/BUILD/pyhmmer-0.10.12
  creating builddir/build/BUILD/pyhmmer-0.10.12/build
  creating builddir/build/BUILD/pyhmmer-0.10.12/build/temp.linux-x86_64-cpython-312
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/include/python3.12 -c /builddir/build/BUILD/pyhmmer-0.10.12/build/temp.linux-x86_64-cpython-312/have_getidcryfzbdd.c -o builddir/build/BUILD/pyhmmer-0.10.12/build/temp.linux-x86_64-cpython-312/have_getidcryfzbdd.o -Werror=implicit-function-declaration
  yes
  building pyhmmer.errors for linux-x86_64 with unix compiler
  building 'pyhmmer.errors' extension
  creating build/temp.linux-x86_64-cpython-312/pyhmmer
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DHAS_PYINTERPRETERSTATE_GETID=1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -DCYTHON_WITHOUT_ASSERTIONS=1 -Ibuild/temp.linux-x86_64-cpython-312 -Ivendor/easel -I/usr/include/python3.12 -c pyhmmer/errors.c -o build/temp.linux-x86_64-cpython-312/pyhmmer/errors.o -msse4.1 -Wno-unused-variable
  gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-312/pyhmmer/errors.o build/temp.linux-x86_64-cpython-312/libeasel.a -Lbuild/temp.linux-x86_64-cpython-312 -L/usr/lib64 -Lbuild/temp.linux-x86_64-cpython-312 -leasel -ldivsufsort -leasel -lhmmer -o build/lib.linux-x86_64-cpython-312/pyhmmer/errors.cpython-312-x86_64-linux-gnu.so -msse4.1 -g1
  building pyhmmer.easel for linux-x86_64 with unix compiler
  building 'pyhmmer.easel' extension
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DHAS_PYINTERPRETERSTATE_GETID=1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -DCYTHON_WITHOUT_ASSERTIONS=1 -Ibuild/temp.linux-x86_64-cpython-312 -Ivendor/easel -I/usr/include/python3.12 -c pyhmmer/easel.c -o build/temp.linux-x86_64-cpython-312/pyhmmer/easel.o -msse4.1 -Wno-unused-variable
  In file included from pyhmmer/easel.c:1283:
  pyhmmer/fileobj/linux.h: In function ‘fileobj_linux_read’:
  pyhmmer/fileobj/linux.h:54:13: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
     54 |     if (len > size) {
        |             ^
  pyhmmer/easel.c: In function ‘__pyx_f_7pyhmmer_5easel_8Sequence_write’:
  pyhmmer/easel.c:68054:16: warning: argument 1 null where non-null expected [-Wnonnull]
  68054 |         (void)(fclose(__pyx_v_file));
        |               ~^~~~~~~~~~~~~~~~~~~~~
  In file included from /usr/include/python3.12/Python.h:24,
                   from pyhmmer/easel.c:36:
  /usr/include/stdio.h:184:12: note: in a call to function ‘fclose’ declared ‘nonnull’
    184 | extern int fclose (FILE *__stream) __nonnull ((1));
        |            ^~~~~~
  pyhmmer/easel.c: In function ‘__pyx_f_7pyhmmer_5easel_3MSA_write’:
  pyhmmer/easel.c:53851:16: warning: argument 1 null where non-null expected [-Wnonnull]
  53851 |         (void)(fclose(__pyx_v_file));
        |               ~^~~~~~~~~~~~~~~~~~~~~
  /usr/include/stdio.h:184:12: note: in a call to function ‘fclose’ declared ‘nonnull’
    184 | extern int fclose (FILE *__stream) __nonnull ((1));
        |            ^~~~~~
  gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-312/pyhmmer/easel.o build/temp.linux-x86_64-cpython-312/libeasel.a -Lbuild/temp.linux-x86_64-cpython-312 -L/usr/lib64 -Lbuild/temp.linux-x86_64-cpython-312 -leasel -ldivsufsort -leasel -lhmmer -o build/lib.linux-x86_64-cpython-312/pyhmmer/easel.cpython-312-x86_64-linux-gnu.so -msse4.1 -g1
  building pyhmmer.plan7 for linux-x86_64 with unix compiler
  building 'pyhmmer.plan7' extension
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DHAS_PYINTERPRETERSTATE_GETID=1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -DCYTHON_WITHOUT_ASSERTIONS=1 -Ibuild/temp.linux-x86_64-cpython-312 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ivendor/easel -I/usr/include/python3.12 -c pyhmmer/plan7.c -o build/temp.linux-x86_64-cpython-312/pyhmmer/plan7.o -msse4.1 -Wno-unused-variable
  In file included from pyhmmer/plan7.c:1281:
  pyhmmer/fileobj/linux.h: In function ‘fileobj_linux_read’:
  pyhmmer/fileobj/linux.h:54:13: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
     54 |     if (len > size) {
        |             ^
  pyhmmer/plan7.c: In function ‘__pyx_f_8libhmmer_6nhmmer_idlen_list_assign’:
  pyhmmer/plan7.c:20267:30: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  20267 |       __pyx_t_5 = (__pyx_v_j < __pyx_v_l->count);
        |                              ^
  pyhmmer/plan7.c:20283:28: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  20283 |     __pyx_t_4 = (__pyx_v_j == __pyx_v_l->count);
        |                            ^~
  pyhmmer/plan7.c: In function ‘__pyx_f_7pyhmmer_5plan7_21OptimizedProfileBlock__allocate’:
  pyhmmer/plan7.c:62575:66: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  62575 |     for (__pyx_t_10 = __pyx_v_self->_block->listSize; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) {
        |                                                                  ^
  pyhmmer/plan7.c: In function ‘__pyx_fuse_1__pyx_f_7pyhmmer_5plan7_8Pipeline_search_hmm’:
  pyhmmer/plan7.c:72275:27: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  72275 |   __pyx_t_6 = (__pyx_t_10 > __pyx_v_7pyhmmer_5plan7_HMMER_TARGET_LIMIT);
        |                           ^
  pyhmmer/plan7.c: In function ‘__pyx_f_7pyhmmer_5plan7_8Pipeline__search_loop_file’:
  pyhmmer/plan7.c:74112:36: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  74112 |       __pyx_t_1 = (__pyx_v_dbsq->L > __pyx_v_7pyhmmer_5plan7_HMMER_TARGET_LIMIT);
        |                                    ^
  pyhmmer/plan7.c: In function ‘__pyx_fuse_0__pyx_f_7pyhmmer_5plan7_8Pipeline_scan_seq’:
  pyhmmer/plan7.c:75388:49: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  75388 |   __pyx_t_7 = (__pyx_v_query->__pyx_base._sq->n > __pyx_v_7pyhmmer_5plan7_HMMER_TARGET_LIMIT);
        |                                                 ^
  pyhmmer/plan7.c: In function ‘__pyx_fuse_1__pyx_f_7pyhmmer_5plan7_8Pipeline_scan_seq’:
  pyhmmer/plan7.c:75808:49: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  75808 |   __pyx_t_6 = (__pyx_v_query->__pyx_base._sq->n > __pyx_v_7pyhmmer_5plan7_HMMER_TARGET_LIMIT);
        |                                                 ^
  gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-312/pyhmmer/plan7.o build/temp.linux-x86_64-cpython-312/libhmmer.a build/temp.linux-x86_64-cpython-312/libeasel.a build/temp.linux-x86_64-cpython-312/libdivsufsort.a -Lbuild/temp.linux-x86_64-cpython-312 -L/usr/lib64 -Lbuild/temp.linux-x86_64-cpython-312 -lhmmer -leasel -ldivsufsort -ldivsufsort -leasel -lhmmer -o build/lib.linux-x86_64-cpython-312/pyhmmer/plan7.cpython-312-x86_64-linux-gnu.so -msse4.1 -g1
  building pyhmmer.daemon for linux-x86_64 with unix compiler
  building 'pyhmmer.daemon' extension
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DHAS_PYINTERPRETERSTATE_GETID=1 -DeslENABLE_SSE=1 -DeslENABLE_SSE4=1 -DCYTHON_WITHOUT_ASSERTIONS=1 -Ibuild/temp.linux-x86_64-cpython-312 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ivendor/easel -I/usr/include/python3.12 -c pyhmmer/daemon.c -o build/temp.linux-x86_64-cpython-312/pyhmmer/daemon.o -msse4.1 -Wno-unused-variable
  pyhmmer/daemon.c: In function ‘__pyx_f_8libhmmer_6nhmmer_idlen_list_assign’:
  pyhmmer/daemon.c:14187:30: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  14187 |       __pyx_t_5 = (__pyx_v_j < __pyx_v_l->count);
        |                              ^
  pyhmmer/daemon.c:14203:28: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  14203 |     __pyx_t_4 = (__pyx_v_j == __pyx_v_l->count);
        |                            ^~
  gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-312/pyhmmer/daemon.o build/temp.linux-x86_64-cpython-312/libhmmer.a build/temp.linux-x86_64-cpython-312/libeasel.a build/temp.linux-x86_64-cpython-312/libdivsufsort.a -Lbuild/temp.linux-x86_64-cpython-312 -L/usr/lib64 -Lbuild/temp.linux-x86_64-cpython-312 -lhmmer -leasel -ldivsufsort -ldivsufsort -leasel -lhmmer -o build/lib.linux-x86_64-cpython-312/pyhmmer/daemon.cpython-312-x86_64-linux-gnu.so -msse4.1 -g1
  installing to build/bdist.linux-x86_64/wheel
  running install
  running install_lib
  creating build/bdist.linux-x86_64
  creating build/bdist.linux-x86_64/wheel
  creating build/bdist.linux-x86_64/wheel/pyhmmer
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/__init__.py -> build/bdist.linux-x86_64/wheel/pyhmmer
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/hmmer.py -> build/bdist.linux-x86_64/wheel/pyhmmer
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/utils.py -> build/bdist.linux-x86_64/wheel/pyhmmer
  creating build/bdist.linux-x86_64/wheel/pyhmmer/tests
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/__init__.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_doctest.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_errors.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_hmmer.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/utils.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests
  creating build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_easel
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_easel/__init__.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_easel
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_easel/test_alphabet.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_easel
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_easel/test_bitfield.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_easel
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_easel/test_block.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_easel
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_easel/test_gencode.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_easel
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_easel/test_keyhash.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_easel
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_easel/test_matrix.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_easel
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_easel/test_msa.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_easel
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_easel/test_msafile.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_easel
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_easel/test_randomness.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_easel
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_easel/test_sequence.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_easel
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_easel/test_sequencefile.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_easel
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_easel/test_ssi.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_easel
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_easel/test_vector.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_easel
  creating build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_plan7
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_plan7/__init__.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_plan7
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_plan7/test_alignment.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_plan7
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_plan7/test_background.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_plan7
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_plan7/test_block.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_plan7
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_plan7/test_builder.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_plan7
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_plan7/test_hit.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_plan7
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_plan7/test_hmm.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_plan7
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_plan7/test_hmmfile.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_plan7
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_plan7/test_optimizedprofile.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_plan7
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_plan7/test_pipeline.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_plan7
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_plan7/test_profile.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_plan7
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_plan7/test_tophits.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_plan7
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_plan7/test_tracealigner.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_plan7
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/test_plan7/test_traces.py -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/test_plan7
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/requirements.txt -> build/bdist.linux-x86_64/wheel/pyhmmer/tests
  creating build/bdist.linux-x86_64/wheel/pyhmmer/tests/data
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/README.md -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data
  creating build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/make.sh -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms
  creating build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/bin
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/bin/PF02826.h3m -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/bin
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/bin/PKSI-AT.h3m -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/bin
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/bin/RF00001.h3m -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/bin
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/bin/RREFam.h3m -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/bin
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/bin/Thioesterase.h3m -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/bin
  creating build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/db
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/db/PF02826.hmm -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/db
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/db/PF02826.hmm.h3f -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/db
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/db/PF02826.hmm.h3i -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/db
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/db/PF02826.hmm.h3m -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/db
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/db/PF02826.hmm.h3p -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/db
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/db/PKSI-AT.hmm -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/db
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3f -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/db
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3i -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/db
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3m -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/db
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3p -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/db
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/db/RREFam.hmm -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/db
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/db/RREFam.hmm.h3f -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/db
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/db/RREFam.hmm.h3i -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/db
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/db/RREFam.hmm.h3m -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/db
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/db/RREFam.hmm.h3p -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/db
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/db/Thioesterase.hmm -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/db
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3f -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/db
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3i -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/db
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3m -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/db
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3p -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/db
  creating build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/txt
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/txt/KR.hmm -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/txt
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/txt/LuxC.hmm -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/txt
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/txt/PF02826.hmm -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/txt
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/txt/PKSI-AT.hmm -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/txt
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/txt/RF00001.hmm -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/txt
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/txt/RREFam.hmm -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/txt
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/txt/Thioesterase.hmm -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/txt
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/txt/bmyD.hmm -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/txt
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/txt/laccase.hmm -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/txt
  creating build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/txt2
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/txt2/RREFam.hmm2 -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/txt2
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/hmms/txt2/Thioesterase.hmm2 -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/hmms/txt2
  creating build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/jackhmmer
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/jackhmmer/KR-1.sto -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/jackhmmer
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/jackhmmer/KR-1_bkup.sto -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/jackhmmer
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/jackhmmer/KR-2.sto -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/jackhmmer
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/jackhmmer/KR-3.sto -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/jackhmmer
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/jackhmmer/KR-4.sto -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/jackhmmer
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/jackhmmer/KR-5.sto -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/jackhmmer
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/jackhmmer/KR-6.sto -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/jackhmmer
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/jackhmmer/p12748-1.sto -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/jackhmmer
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/jackhmmer/p12748-2.sto -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/jackhmmer
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/jackhmmer/p12748-3.sto -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/jackhmmer
  creating build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/msa
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/msa/LuxC.faa -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/msa
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/msa/LuxC.hmmalign.sto -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/msa
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/msa/LuxC.sto -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/msa
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/msa/laccase.clw -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/msa
  creating build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/seqs
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/seqs/1390.SAMEA104415756.OFHT01000022.fna -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/seqs
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/seqs/1390.SAMEA104415756.OFHT01000024.fna -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/seqs
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/seqs/938293.PRJEB85.HG003687.faa -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/seqs
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/seqs/BGC0001090.gbk -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/seqs
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/seqs/CP040672.1.genes_100.fna -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/seqs
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/seqs/LuxC.faa -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/seqs
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/seqs/PKSI.faa -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/seqs
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/seqs/bmyD.fna -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/seqs
  creating build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/tables
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/tables/A0A089QRB9.domtbl -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/tables
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/tables/PF02826.domtbl -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/tables
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/tables/PF02826.tbl -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/tables
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/tables/RREFam.domtbl -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/tables
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/tables/RREFam.scan.tbl -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/tables
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/tables/RREFam.tbl -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/tables
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/tables/bmyD1.tbl -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/tables
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/tables/bmyD2.tbl -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/tables
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/tests/data/tables/bmyD3.tbl -> build/bdist.linux-x86_64/wheel/pyhmmer/tests/data/tables
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/_getid.pxi -> build/bdist.linux-x86_64/wheel/pyhmmer
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/daemon.pxd -> build/bdist.linux-x86_64/wheel/pyhmmer
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/daemon.pyi -> build/bdist.linux-x86_64/wheel/pyhmmer
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/daemon.pyx -> build/bdist.linux-x86_64/wheel/pyhmmer
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/easel.pxd -> build/bdist.linux-x86_64/wheel/pyhmmer
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/easel.pyi -> build/bdist.linux-x86_64/wheel/pyhmmer
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/easel.pyx -> build/bdist.linux-x86_64/wheel/pyhmmer
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/errors.pyi -> build/bdist.linux-x86_64/wheel/pyhmmer
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/errors.pyx -> build/bdist.linux-x86_64/wheel/pyhmmer
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/exceptions.pxi -> build/bdist.linux-x86_64/wheel/pyhmmer
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/plan7.pxd -> build/bdist.linux-x86_64/wheel/pyhmmer
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/plan7.pyi -> build/bdist.linux-x86_64/wheel/pyhmmer
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/plan7.pyx -> build/bdist.linux-x86_64/wheel/pyhmmer
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/py.typed -> build/bdist.linux-x86_64/wheel/pyhmmer
  creating build/bdist.linux-x86_64/wheel/pyhmmer/fileobj
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/fileobj/__init__.pxd -> build/bdist.linux-x86_64/wheel/pyhmmer/fileobj
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/fileobj/bsd.h -> build/bdist.linux-x86_64/wheel/pyhmmer/fileobj
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/fileobj/bsd.pxd -> build/bdist.linux-x86_64/wheel/pyhmmer/fileobj
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/fileobj/linux.h -> build/bdist.linux-x86_64/wheel/pyhmmer/fileobj
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/fileobj/linux.pxd -> build/bdist.linux-x86_64/wheel/pyhmmer/fileobj
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/fileobj/util.h -> build/bdist.linux-x86_64/wheel/pyhmmer/fileobj
  creating build/bdist.linux-x86_64/wheel/pyhmmer/reexports
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/reexports/__init__.pxd -> build/bdist.linux-x86_64/wheel/pyhmmer/reexports
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/reexports/esl_sqio_ascii.h -> build/bdist.linux-x86_64/wheel/pyhmmer/reexports
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/reexports/esl_sqio_ascii.pxd -> build/bdist.linux-x86_64/wheel/pyhmmer/reexports
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/reexports/p7_hmmfile.h -> build/bdist.linux-x86_64/wheel/pyhmmer/reexports
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/reexports/p7_hmmfile.pxd -> build/bdist.linux-x86_64/wheel/pyhmmer/reexports
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/reexports/p7_tophits.h -> build/bdist.linux-x86_64/wheel/pyhmmer/reexports
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/reexports/p7_tophits.pxd -> build/bdist.linux-x86_64/wheel/pyhmmer/reexports
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/errors.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/pyhmmer
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/easel.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/pyhmmer
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/plan7.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/pyhmmer
  copying build/lib.linux-x86_64-cpython-312/pyhmmer/daemon.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/pyhmmer
  running install_egg_info
  Copying pyhmmer.egg-info to build/bdist.linux-x86_64/wheel/pyhmmer-0.10.12-py3.12.egg-info
  running install_scripts
  creating build/bdist.linux-x86_64/wheel/pyhmmer-0.10.12.dist-info/WHEEL
  creating '/builddir/build/BUILD/pyhmmer-0.10.12/.pyproject-builddir/pip-wheel-8irqwufs/.tmp-jdd_ym66/pyhmmer-0.10.12-cp312-cp312-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it
  adding 'pyhmmer/__init__.py'
  adding 'pyhmmer/_getid.pxi'
  adding 'pyhmmer/daemon.cpython-312-x86_64-linux-gnu.so'
  adding 'pyhmmer/daemon.pxd'
  adding 'pyhmmer/daemon.pyi'
  adding 'pyhmmer/daemon.pyx'
  adding 'pyhmmer/easel.cpython-312-x86_64-linux-gnu.so'
  adding 'pyhmmer/easel.pxd'
  adding 'pyhmmer/easel.pyi'
  adding 'pyhmmer/easel.pyx'
  adding 'pyhmmer/errors.cpython-312-x86_64-linux-gnu.so'
  adding 'pyhmmer/errors.pyi'
  adding 'pyhmmer/errors.pyx'
  adding 'pyhmmer/exceptions.pxi'
  adding 'pyhmmer/hmmer.py'
  adding 'pyhmmer/plan7.cpython-312-x86_64-linux-gnu.so'
  adding 'pyhmmer/plan7.pxd'
  adding 'pyhmmer/plan7.pyi'
  adding 'pyhmmer/plan7.pyx'
  adding 'pyhmmer/py.typed'
  adding 'pyhmmer/utils.py'
  adding 'pyhmmer/fileobj/__init__.pxd'
  adding 'pyhmmer/fileobj/bsd.h'
  adding 'pyhmmer/fileobj/bsd.pxd'
  adding 'pyhmmer/fileobj/linux.h'
  adding 'pyhmmer/fileobj/linux.pxd'
  adding 'pyhmmer/fileobj/util.h'
  adding 'pyhmmer/reexports/__init__.pxd'
  adding 'pyhmmer/reexports/esl_sqio_ascii.h'
  adding 'pyhmmer/reexports/esl_sqio_ascii.pxd'
  adding 'pyhmmer/reexports/p7_hmmfile.h'
  adding 'pyhmmer/reexports/p7_hmmfile.pxd'
  adding 'pyhmmer/reexports/p7_tophits.h'
  adding 'pyhmmer/reexports/p7_tophits.pxd'
  adding 'pyhmmer/tests/__init__.py'
  adding 'pyhmmer/tests/requirements.txt'
  adding 'pyhmmer/tests/test_doctest.py'
  adding 'pyhmmer/tests/test_errors.py'
  adding 'pyhmmer/tests/test_hmmer.py'
  adding 'pyhmmer/tests/utils.py'
  adding 'pyhmmer/tests/data/README.md'
  adding 'pyhmmer/tests/data/hmms/make.sh'
  adding 'pyhmmer/tests/data/hmms/bin/PF02826.h3m'
  adding 'pyhmmer/tests/data/hmms/bin/PKSI-AT.h3m'
  adding 'pyhmmer/tests/data/hmms/bin/RF00001.h3m'
  adding 'pyhmmer/tests/data/hmms/bin/RREFam.h3m'
  adding 'pyhmmer/tests/data/hmms/bin/Thioesterase.h3m'
  adding 'pyhmmer/tests/data/hmms/db/PF02826.hmm'
  adding 'pyhmmer/tests/data/hmms/db/PF02826.hmm.h3f'
  adding 'pyhmmer/tests/data/hmms/db/PF02826.hmm.h3i'
  adding 'pyhmmer/tests/data/hmms/db/PF02826.hmm.h3m'
  adding 'pyhmmer/tests/data/hmms/db/PF02826.hmm.h3p'
  adding 'pyhmmer/tests/data/hmms/db/PKSI-AT.hmm'
  adding 'pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3f'
  adding 'pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3i'
  adding 'pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3m'
  adding 'pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3p'
  adding 'pyhmmer/tests/data/hmms/db/RREFam.hmm'
  adding 'pyhmmer/tests/data/hmms/db/RREFam.hmm.h3f'
  adding 'pyhmmer/tests/data/hmms/db/RREFam.hmm.h3i'
  adding 'pyhmmer/tests/data/hmms/db/RREFam.hmm.h3m'
  adding 'pyhmmer/tests/data/hmms/db/RREFam.hmm.h3p'
  adding 'pyhmmer/tests/data/hmms/db/Thioesterase.hmm'
  adding 'pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3f'
  adding 'pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3i'
  adding 'pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3m'
  adding 'pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3p'
  adding 'pyhmmer/tests/data/hmms/txt/KR.hmm'
  adding 'pyhmmer/tests/data/hmms/txt/LuxC.hmm'
  adding 'pyhmmer/tests/data/hmms/txt/PF02826.hmm'
  adding 'pyhmmer/tests/data/hmms/txt/PKSI-AT.hmm'
  adding 'pyhmmer/tests/data/hmms/txt/RF00001.hmm'
  adding 'pyhmmer/tests/data/hmms/txt/RREFam.hmm'
  adding 'pyhmmer/tests/data/hmms/txt/Thioesterase.hmm'
  adding 'pyhmmer/tests/data/hmms/txt/bmyD.hmm'
  adding 'pyhmmer/tests/data/hmms/txt/laccase.hmm'
  adding 'pyhmmer/tests/data/hmms/txt2/RREFam.hmm2'
  adding 'pyhmmer/tests/data/hmms/txt2/Thioesterase.hmm2'
  adding 'pyhmmer/tests/data/jackhmmer/KR-1.sto'
  adding 'pyhmmer/tests/data/jackhmmer/KR-1_bkup.sto'
  adding 'pyhmmer/tests/data/jackhmmer/KR-2.sto'
  adding 'pyhmmer/tests/data/jackhmmer/KR-3.sto'
  adding 'pyhmmer/tests/data/jackhmmer/KR-4.sto'
  adding 'pyhmmer/tests/data/jackhmmer/KR-5.sto'
  adding 'pyhmmer/tests/data/jackhmmer/KR-6.sto'
  adding 'pyhmmer/tests/data/jackhmmer/p12748-1.sto'
  adding 'pyhmmer/tests/data/jackhmmer/p12748-2.sto'
  adding 'pyhmmer/tests/data/jackhmmer/p12748-3.sto'
  adding 'pyhmmer/tests/data/msa/LuxC.faa'
  adding 'pyhmmer/tests/data/msa/LuxC.hmmalign.sto'
  adding 'pyhmmer/tests/data/msa/LuxC.sto'
  adding 'pyhmmer/tests/data/msa/laccase.clw'
  adding 'pyhmmer/tests/data/seqs/1390.SAMEA104415756.OFHT01000022.fna'
  adding 'pyhmmer/tests/data/seqs/1390.SAMEA104415756.OFHT01000024.fna'
  adding 'pyhmmer/tests/data/seqs/938293.PRJEB85.HG003687.faa'
  adding 'pyhmmer/tests/data/seqs/BGC0001090.gbk'
  adding 'pyhmmer/tests/data/seqs/CP040672.1.genes_100.fna'
  adding 'pyhmmer/tests/data/seqs/LuxC.faa'
  adding 'pyhmmer/tests/data/seqs/PKSI.faa'
  adding 'pyhmmer/tests/data/seqs/bmyD.fna'
  adding 'pyhmmer/tests/data/tables/A0A089QRB9.domtbl'
  adding 'pyhmmer/tests/data/tables/PF02826.domtbl'
  adding 'pyhmmer/tests/data/tables/PF02826.tbl'
  adding 'pyhmmer/tests/data/tables/RREFam.domtbl'
  adding 'pyhmmer/tests/data/tables/RREFam.scan.tbl'
  adding 'pyhmmer/tests/data/tables/RREFam.tbl'
  adding 'pyhmmer/tests/data/tables/bmyD1.tbl'
  adding 'pyhmmer/tests/data/tables/bmyD2.tbl'
  adding 'pyhmmer/tests/data/tables/bmyD3.tbl'
  adding 'pyhmmer/tests/test_easel/__init__.py'
  adding 'pyhmmer/tests/test_easel/test_alphabet.py'
  adding 'pyhmmer/tests/test_easel/test_bitfield.py'
  adding 'pyhmmer/tests/test_easel/test_block.py'
  adding 'pyhmmer/tests/test_easel/test_gencode.py'
  adding 'pyhmmer/tests/test_easel/test_keyhash.py'
  adding 'pyhmmer/tests/test_easel/test_matrix.py'
  adding 'pyhmmer/tests/test_easel/test_msa.py'
  adding 'pyhmmer/tests/test_easel/test_msafile.py'
  adding 'pyhmmer/tests/test_easel/test_randomness.py'
  adding 'pyhmmer/tests/test_easel/test_sequence.py'
  adding 'pyhmmer/tests/test_easel/test_sequencefile.py'
  adding 'pyhmmer/tests/test_easel/test_ssi.py'
  adding 'pyhmmer/tests/test_easel/test_vector.py'
  adding 'pyhmmer/tests/test_plan7/__init__.py'
  adding 'pyhmmer/tests/test_plan7/test_alignment.py'
  adding 'pyhmmer/tests/test_plan7/test_background.py'
  adding 'pyhmmer/tests/test_plan7/test_block.py'
  adding 'pyhmmer/tests/test_plan7/test_builder.py'
  adding 'pyhmmer/tests/test_plan7/test_hit.py'
  adding 'pyhmmer/tests/test_plan7/test_hmm.py'
  adding 'pyhmmer/tests/test_plan7/test_hmmfile.py'
  adding 'pyhmmer/tests/test_plan7/test_optimizedprofile.py'
  adding 'pyhmmer/tests/test_plan7/test_pipeline.py'
  adding 'pyhmmer/tests/test_plan7/test_profile.py'
  adding 'pyhmmer/tests/test_plan7/test_tophits.py'
  adding 'pyhmmer/tests/test_plan7/test_tracealigner.py'
  adding 'pyhmmer/tests/test_plan7/test_traces.py'
  adding 'pyhmmer-0.10.12.dist-info/COPYING'
  adding 'pyhmmer-0.10.12.dist-info/METADATA'
  adding 'pyhmmer-0.10.12.dist-info/WHEEL'
  adding 'pyhmmer-0.10.12.dist-info/top_level.txt'
  adding 'pyhmmer-0.10.12.dist-info/RECORD'
  removing build/bdist.linux-x86_64/wheel
  Building wheel for pyhmmer (pyproject.toml): finished with status 'done'
  Created wheel for pyhmmer: filename=pyhmmer-0.10.12-cp312-cp312-linux_x86_64.whl size=9134284 sha256=14362afe1e4d1a4305a666c89776e48f3414bf5ae1d54eed711d7732905cae8e
  Stored in directory: /builddir/.cache/pip/wheels/45/d6/dc/ad9da4a17bc4614956f34ef8e431b2d5da87ffe6797a021594
Successfully built pyhmmer
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.CzmQjZ
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/python-pyhmmer-0.10.12-1.fc40.x86_64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/python-pyhmmer-0.10.12-1.fc40.x86_64
++ dirname /builddir/build/BUILDROOT/python-pyhmmer-0.10.12-1.fc40.x86_64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/python-pyhmmer-0.10.12-1.fc40.x86_64
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd pyhmmer-0.10.12
++ ls /builddir/build/BUILD/pyhmmer-0.10.12/pyproject-wheeldir/pyhmmer-0.10.12-cp312-cp312-linux_x86_64.whl
++ xargs basename --multiple
++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/'
+ specifier=pyhmmer==0.10.12
+ '[' -z pyhmmer==0.10.12 ']'
+ TMPDIR=/builddir/build/BUILD/pyhmmer-0.10.12/.pyproject-builddir
+ /usr/bin/python3 -m pip install --root /builddir/build/BUILDROOT/python-pyhmmer-0.10.12-1.fc40.x86_64 --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/pyhmmer-0.10.12/pyproject-wheeldir pyhmmer==0.10.12
Using pip 23.3.2 from /usr/lib/python3.12/site-packages/pip (python 3.12)
Looking in links: /builddir/build/BUILD/pyhmmer-0.10.12/pyproject-wheeldir
Processing ./pyproject-wheeldir/pyhmmer-0.10.12-cp312-cp312-linux_x86_64.whl
Installing collected packages: pyhmmer
Successfully installed pyhmmer-0.10.12
+ '[' -d /builddir/build/BUILDROOT/python-pyhmmer-0.10.12-1.fc40.x86_64/usr/bin ']'
+ rm -f /builddir/build/BUILD/python-pyhmmer-0.10.12-1.fc40.x86_64-pyproject-ghost-distinfo
+ site_dirs=()
+ '[' -d /builddir/build/BUILDROOT/python-pyhmmer-0.10.12-1.fc40.x86_64/usr/lib/python3.12/site-packages ']'
+ '[' /builddir/build/BUILDROOT/python-pyhmmer-0.10.12-1.fc40.x86_64/usr/lib64/python3.12/site-packages '!=' /builddir/build/BUILDROOT/python-pyhmmer-0.10.12-1.fc40.x86_64/usr/lib/python3.12/site-packages ']'
+ '[' -d /builddir/build/BUILDROOT/python-pyhmmer-0.10.12-1.fc40.x86_64/usr/lib64/python3.12/site-packages ']'
+ site_dirs+=("/usr/lib64/python3.12/site-packages")
+ for site_dir in ${site_dirs[@]}
+ for distinfo in /builddir/build/BUILDROOT/python-pyhmmer-0.10.12-1.fc40.x86_64$site_dir/*.dist-info
+ echo '%ghost /usr/lib64/python3.12/site-packages/pyhmmer-0.10.12.dist-info'
+ sed -i s/pip/rpm/ /builddir/build/BUILDROOT/python-pyhmmer-0.10.12-1.fc40.x86_64/usr/lib64/python3.12/site-packages/pyhmmer-0.10.12.dist-info/INSTALLER
+ PYTHONPATH=/usr/lib/rpm/redhat
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILDROOT/python-pyhmmer-0.10.12-1.fc40.x86_64 --record /builddir/build/BUILDROOT/python-pyhmmer-0.10.12-1.fc40.x86_64/usr/lib64/python3.12/site-packages/pyhmmer-0.10.12.dist-info/RECORD --output /builddir/build/BUILD/python-pyhmmer-0.10.12-1.fc40.x86_64-pyproject-record
+ rm -fv /builddir/build/BUILDROOT/python-pyhmmer-0.10.12-1.fc40.x86_64/usr/lib64/python3.12/site-packages/pyhmmer-0.10.12.dist-info/RECORD
removed '/builddir/build/BUILDROOT/python-pyhmmer-0.10.12-1.fc40.x86_64/usr/lib64/python3.12/site-packages/pyhmmer-0.10.12.dist-info/RECORD'
+ rm -fv /builddir/build/BUILDROOT/python-pyhmmer-0.10.12-1.fc40.x86_64/usr/lib64/python3.12/site-packages/pyhmmer-0.10.12.dist-info/REQUESTED
removed '/builddir/build/BUILDROOT/python-pyhmmer-0.10.12-1.fc40.x86_64/usr/lib64/python3.12/site-packages/pyhmmer-0.10.12.dist-info/REQUESTED'
++ wc -l /builddir/build/BUILD/python-pyhmmer-0.10.12-1.fc40.x86_64-pyproject-ghost-distinfo
++ cut -f1 '-d '
+ lines=1
+ '[' 1 -ne 1 ']'
+ RPM_PERCENTAGES_COUNT=2
+ /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/python-pyhmmer-0.10.12-1.fc40.x86_64-pyproject-files --output-modules /builddir/build/BUILD/python-pyhmmer-0.10.12-1.fc40.x86_64-pyproject-modules --buildroot /builddir/build/BUILDROOT/python-pyhmmer-0.10.12-1.fc40.x86_64 --sitelib /usr/lib/python3.12/site-packages --sitearch /usr/lib64/python3.12/site-packages --python-version 3.12 --pyproject-record /builddir/build/BUILD/python-pyhmmer-0.10.12-1.fc40.x86_64-pyproject-record --prefix /usr '*' +auto
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 0.10.12-1.fc40 --unique-debug-suffix -0.10.12-1.fc40.x86_64 --unique-debug-src-base python-pyhmmer-0.10.12-1.fc40.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/pyhmmer-0.10.12
find-debuginfo: starting
Extracting debug info from 4 files
DWARF-compressing 4 files
sepdebugcrcfix: Updated 4 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/python-pyhmmer-0.10.12-1.fc40.x86_64
34689 blocks
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2
Bytecompiling .py files below /builddir/build/BUILDROOT/python-pyhmmer-0.10.12-1.fc40.x86_64/usr/lib64/python3.12 using python3.12
Bytecompiling .py files below /builddir/build/BUILDROOT/python-pyhmmer-0.10.12-1.fc40.x86_64/usr/lib/debug/usr/lib64/python3.12 using python3.12
+ /usr/lib/rpm/redhat/brp-python-hardlink
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.jO1agE
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd pyhmmer-0.10.12
+ '[' '!' -f /builddir/build/BUILD/python-pyhmmer-0.10.12-1.fc40.x86_64-pyproject-modules ']'
+ PATH=/builddir/build/BUILDROOT/python-pyhmmer-0.10.12-1.fc40.x86_64/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
+ PYTHONPATH=/builddir/build/BUILDROOT/python-pyhmmer-0.10.12-1.fc40.x86_64/usr/lib64/python3.12/site-packages:/builddir/build/BUILDROOT/python-pyhmmer-0.10.12-1.fc40.x86_64/usr/lib/python3.12/site-packages
+ _PYTHONSITE=/builddir/build/BUILDROOT/python-pyhmmer-0.10.12-1.fc40.x86_64/usr/lib64/python3.12/site-packages:/builddir/build/BUILDROOT/python-pyhmmer-0.10.12-1.fc40.x86_64/usr/lib/python3.12/site-packages
+ PYTHONDONTWRITEBYTECODE=1
+ /usr/bin/python3 -sP /usr/lib/rpm/redhat/import_all_modules.py -f /builddir/build/BUILD/python-pyhmmer-0.10.12-1.fc40.x86_64-pyproject-modules -t
Check import: pyhmmer
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: python3-pyhmmer-0.10.12-1.fc40.x86_64
Provides: python-pyhmmer = 0.10.12-1.fc40 python3-pyhmmer = 0.10.12-1.fc40 python3-pyhmmer(x86-64) = 0.10.12-1.fc40 python3.12-pyhmmer = 0.10.12-1.fc40 python3.12dist(pyhmmer) = 0.10.12 python3dist(pyhmmer) = 0.10.12
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: (python3.12dist(psutil) >= 5.8 with python3.12dist(psutil) < 6) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) python(abi) = 3.12 rtld(GNU_HASH)
Processing files: python-pyhmmer-debugsource-0.10.12-1.fc40.x86_64
Provides: python-pyhmmer-debugsource = 0.10.12-1.fc40 python-pyhmmer-debugsource(x86-64) = 0.10.12-1.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: python3-pyhmmer-debuginfo-0.10.12-1.fc40.x86_64
Provides: debuginfo(build-id) = 7cd03513aeaa8ac80169db06b38948cc51367e21 debuginfo(build-id) = 94d79ab1c9980f5567731b62ddfcef2ac0975906 debuginfo(build-id) = f0c046e13a6f6466fe2e5ebd5917411850b4d05c debuginfo(build-id) = f3291e829a9cc0896deddcb5e8a989df3c66b536 python-pyhmmer-debuginfo = 0.10.12-1.fc40 python3-pyhmmer-debuginfo = 0.10.12-1.fc40 python3-pyhmmer-debuginfo(x86-64) = 0.10.12-1.fc40 python3.12-pyhmmer-debuginfo = 0.10.12-1.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: python-pyhmmer-debugsource(x86-64) = 0.10.12-1.fc40
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/python-pyhmmer-0.10.12-1.fc40.x86_64
Wrote: /builddir/build/SRPMS/python-pyhmmer-0.10.12-1.fc40.src.rpm
Wrote: /builddir/build/RPMS/python3-pyhmmer-0.10.12-1.fc40.x86_64.rpm
Wrote: /builddir/build/RPMS/python-pyhmmer-debugsource-0.10.12-1.fc40.x86_64.rpm
Wrote: /builddir/build/RPMS/python3-pyhmmer-debuginfo-0.10.12-1.fc40.x86_64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.taiw4P
+ umask 022
+ cd /builddir/build/BUILD
+ cd pyhmmer-0.10.12
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/python-pyhmmer-0.10.12-1.fc40.x86_64
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.xQsUdr
+ umask 022
+ cd /builddir/build/BUILD
+ rm -rf /builddir/build/BUILD/pyhmmer-0.10.12-SPECPARTS
+ rm -rf pyhmmer-0.10.12 pyhmmer-0.10.12.gemspec
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild python-pyhmmer-0.10.12-1.fc40.src.rpm
Finish: build phase for python-pyhmmer-0.10.12-1.fc40.src.rpm
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-40-x86_64-1714078417.276338/root/var/log/dnf5.log
INFO: Done(/var/lib/copr-rpmbuild/results/python-pyhmmer-0.10.12-1.fc40.src.rpm) Config(child) 4 minutes 52 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool
Package info:
{
    "packages": [
        {
            "name": "python-pyhmmer-debugsource",
            "epoch": null,
            "version": "0.10.12",
            "release": "1.fc40",
            "arch": "x86_64"
        },
        {
            "name": "python3-pyhmmer",
            "epoch": null,
            "version": "0.10.12",
            "release": "1.fc40",
            "arch": "x86_64"
        },
        {
            "name": "python-pyhmmer",
            "epoch": null,
            "version": "0.10.12",
            "release": "1.fc40",
            "arch": "src"
        },
        {
            "name": "python3-pyhmmer-debuginfo",
            "epoch": null,
            "version": "0.10.12",
            "release": "1.fc40",
            "arch": "x86_64"
        }
    ]
}
RPMResults finished