Warning: Permanently added '3.80.215.113' (ED25519) to the list of known hosts.

You can reproduce this build on your computer by running:

  sudo dnf install copr-rpmbuild
  /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/9736846-fedora-41-x86_64 --chroot fedora-41-x86_64


Version: 1.6
PID: 10594
Logging PID: 10596
Task:
{'allow_user_ssh': False,
 'appstream': False,
 'background': True,
 'build_id': 9736846,
 'buildroot_pkgs': [],
 'chroot': 'fedora-41-x86_64',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': '7f4754232da8a89d68db8bdab71d89b7363af238',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/@copr/PyPI/python-pyhmmer',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'python-pyhmmer',
 'package_version': '0.11.2-1',
 'project_dirname': 'PyPI',
 'project_name': 'PyPI',
 'project_owner': '@copr',
 'repo_priority': None,
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/@copr/PyPI/fedora-41-x86_64/',
            'id': 'copr_base',
            'name': 'Copr repository',
            'priority': None}],
 'sandbox': '@copr/PyPI--ksurma',
 'source_json': {},
 'source_type': None,
 'ssh_public_keys': None,
 'storage': None,
 'submitter': 'ksurma',
 'tags': [],
 'task_id': '9736846-fedora-41-x86_64',
 'timeout': 18000,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/@copr/PyPI/python-pyhmmer /var/lib/copr-rpmbuild/workspace/workdir-p9bf3nxn/python-pyhmmer --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/@copr/PyPI/python-pyhmmer', '/var/lib/copr-rpmbuild/workspace/workdir-p9bf3nxn/python-pyhmmer', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-p9bf3nxn/python-pyhmmer'...

Running: git checkout 7f4754232da8a89d68db8bdab71d89b7363af238 --

cmd: ['git', 'checkout', '7f4754232da8a89d68db8bdab71d89b7363af238', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-p9bf3nxn/python-pyhmmer
rc: 0
stdout: 
stderr: Note: switching to '7f4754232da8a89d68db8bdab71d89b7363af238'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at 7f47542 automatic import of python-pyhmmer

Running: dist-git-client sources

cmd: ['dist-git-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-p9bf3nxn/python-pyhmmer
rc: 0
stdout: 
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading pyhmmer-0.11.2.tar.gz
INFO: Reading stdout from command: curl --help all
INFO: Calling: curl -H Pragma: -o pyhmmer-0.11.2.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/@copr/PyPI/python-pyhmmer/pyhmmer-0.11.2.tar.gz/md5/1dacd4d80458b289740264777cbfc961/pyhmmer-0.11.2.tar.gz
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 7120k  100 7120k    0     0   212M      0 --:--:-- --:--:-- --:--:--  217M
INFO: Reading stdout from command: md5sum pyhmmer-0.11.2.tar.gz

tail: /var/lib/copr-rpmbuild/main.log: file truncated
Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-p9bf3nxn/python-pyhmmer/python-pyhmmer.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-p9bf3nxn/python-pyhmmer --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1761574193.789442 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 6.5 starting (python version = 3.13.7, NVR = mock-6.5-1.fc42), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-p9bf3nxn/python-pyhmmer/python-pyhmmer.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-p9bf3nxn/python-pyhmmer --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1761574193.789442 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-p9bf3nxn/python-pyhmmer/python-pyhmmer.spec)  Config(fedora-41-x86_64)
Start: clean chroot
Finish: clean chroot
Mock Version: 6.5
INFO: Mock Version: 6.5
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-bootstrap-1761574193.789442/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Guessed host environment type: unknown
INFO: Using container image: registry.fedoraproject.org/fedora:41
INFO: Pulling image: registry.fedoraproject.org/fedora:41
INFO: Tagging container image as mock-bootstrap-730f97ca-75fe-4b99-987a-90fb715d3df5
INFO: Checking that 5a4b3bc5709ecce5172e646d55d4e08caf977be4ef48df5f79f36ae0acaf6a17 image matches host's architecture
INFO: Copy content of container 5a4b3bc5709ecce5172e646d55d4e08caf977be4ef48df5f79f36ae0acaf6a17 to /var/lib/mock/fedora-41-x86_64-bootstrap-1761574193.789442/root
INFO: mounting 5a4b3bc5709ecce5172e646d55d4e08caf977be4ef48df5f79f36ae0acaf6a17 with podman image mount
INFO: image 5a4b3bc5709ecce5172e646d55d4e08caf977be4ef48df5f79f36ae0acaf6a17 as /var/lib/containers/storage/overlay/fe908b93705bd7545ac0e556c8581b54296eebbe14604da6f24ac6fd082fe40d/merged
INFO: umounting image 5a4b3bc5709ecce5172e646d55d4e08caf977be4ef48df5f79f36ae0acaf6a17 (/var/lib/containers/storage/overlay/fe908b93705bd7545ac0e556c8581b54296eebbe14604da6f24ac6fd082fe40d/merged) with podman image umount
INFO: Removing image mock-bootstrap-730f97ca-75fe-4b99-987a-90fb715d3df5
INFO: Package manager dnf5 detected and used (fallback)
INFO: Not updating bootstrap chroot, bootstrap_image_ready=True
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-1761574193.789442/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf5 detected and used (direct choice)
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.20.1-1.fc41.x86_64
  rpm-sequoia-1.7.0-5.fc41.x86_64
  dnf5-5.2.16.0-1.fc41.x86_64
  dnf5-plugins-5.2.16.0-1.fc41.x86_64
Start: installing minimal buildroot with dnf5
Updating and loading repositories:
 Copr repository                        100% | 110.0 KiB/s |   1.5 KiB |  00m00s
 fedora                                 100% |  90.8 KiB/s |  32.4 KiB |  00m00s
 updates                                100% | 111.1 KiB/s |   6.8 KiB |  00m00s
Repositories loaded.
Package                            Arch   Version                     Repository      Size
Installing group/module packages:
 bash                              x86_64 5.2.32-1.fc41               fedora       8.2 MiB
 bzip2                             x86_64 1.0.8-19.fc41               fedora      95.7 KiB
 coreutils                         x86_64 9.5-12.fc41                 updates      5.5 MiB
 cpio                              x86_64 2.15-2.fc41                 fedora       1.1 MiB
 diffutils                         x86_64 3.10-8.fc41                 fedora       1.6 MiB
 fedora-release-common             noarch 41-33                       updates     19.7 KiB
 findutils                         x86_64 1:4.10.0-4.fc41             fedora       1.8 MiB
 gawk                              x86_64 5.3.0-4.fc41                fedora       1.7 MiB
 glibc-minimal-langpack            x86_64 2.40-28.fc41                updates      0.0   B
 grep                              x86_64 3.11-9.fc41                 fedora       1.0 MiB
 gzip                              x86_64 1.13-2.fc41                 fedora     389.0 KiB
 info                              x86_64 7.1.1-1.fc41                updates    361.7 KiB
 patch                             x86_64 2.7.6-25.fc41               fedora     266.7 KiB
 redhat-rpm-config                 noarch 294-1.fc41                  updates    183.6 KiB
 rpm-build                         x86_64 4.20.1-1.fc41               updates    193.8 KiB
 sed                               x86_64 4.9-3.fc41                  fedora     861.5 KiB
 shadow-utils                      x86_64 2:4.15.1-12.fc41            fedora       4.1 MiB
 tar                               x86_64 2:1.35-4.fc41               fedora       2.9 MiB
 unzip                             x86_64 6.0-64.fc41                 fedora     386.8 KiB
 util-linux                        x86_64 2.40.4-1.fc41               updates      3.6 MiB
 which                             x86_64 2.21-42.fc41                fedora      80.2 KiB
 xz                                x86_64 1:5.8.1-2.fc41              updates      1.3 MiB
Installing dependencies:
 add-determinism                   x86_64 0.3.6-3.fc41                updates      2.4 MiB
 alternatives                      x86_64 1.31-1.fc41                 updates     64.8 KiB
 ansible-srpm-macros               noarch 1-16.fc41                   fedora      35.7 KiB
 audit-libs                        x86_64 4.1.1-1.fc41                updates    387.1 KiB
 authselect                        x86_64 1.5.0-8.fc41                fedora     157.6 KiB
 authselect-libs                   x86_64 1.5.0-8.fc41                fedora     822.2 KiB
 basesystem                        noarch 11-21.fc41                  fedora       0.0   B
 binutils                          x86_64 2.43.1-8.fc41               updates     27.5 MiB
 build-reproducibility-srpm-macros noarch 0.3.6-3.fc41                updates    735.0   B
 bzip2-libs                        x86_64 1.0.8-19.fc41               fedora      80.7 KiB
 ca-certificates                   noarch 2024.2.69_v8.0.401-1.0.fc41 fedora       2.4 MiB
 coreutils-common                  x86_64 9.5-12.fc41                 updates     11.2 MiB
 cracklib                          x86_64 2.9.11-6.fc41               fedora     238.9 KiB
 crypto-policies                   noarch 20250707-1.git836bbee.fc41  updates    143.8 KiB
 curl                              x86_64 8.9.1-4.fc41                updates    796.2 KiB
 cyrus-sasl-lib                    x86_64 2.1.28-27.fc41              fedora       2.3 MiB
 debugedit                         x86_64 5.1-6.fc41                  updates    200.9 KiB
 dwz                               x86_64 0.15-8.fc41                 fedora     298.9 KiB
 ed                                x86_64 1.20.2-2.fc41               fedora     146.9 KiB
 efi-srpm-macros                   noarch 5-13.fc41                   updates     40.2 KiB
 elfutils                          x86_64 0.193-2.fc41                updates      3.0 MiB
 elfutils-debuginfod-client        x86_64 0.193-2.fc41                updates     84.1 KiB
 elfutils-default-yama-scope       noarch 0.193-2.fc41                updates      1.8 KiB
 elfutils-libelf                   x86_64 0.193-2.fc41                updates      1.2 MiB
 elfutils-libs                     x86_64 0.193-2.fc41                updates    686.6 KiB
 fedora-gpg-keys                   noarch 41-3                        updates    128.2 KiB
 fedora-release                    noarch 41-33                       updates      0.0   B
 fedora-release-identity-basic     noarch 41-33                       updates    654.0   B
 fedora-repos                      noarch 41-3                        updates      4.9 KiB
 file                              x86_64 5.45-7.fc41                 fedora     103.5 KiB
 file-libs                         x86_64 5.45-7.fc41                 fedora       9.9 MiB
 filesystem                        x86_64 3.18-23.fc41                fedora     106.0   B
 fonts-srpm-macros                 noarch 1:2.0.5-17.fc41             fedora      55.8 KiB
 forge-srpm-macros                 noarch 0.4.0-1.fc41                updates     38.9 KiB
 fpc-srpm-macros                   noarch 1.3-13.fc41                 fedora     144.0   B
 gdb-minimal                       x86_64 16.3-1.fc41                 updates     13.3 MiB
 gdbm                              x86_64 1:1.23-7.fc41               fedora     460.9 KiB
 gdbm-libs                         x86_64 1:1.23-7.fc41               fedora     121.9 KiB
 ghc-srpm-macros                   noarch 1.9.1-2.fc41                fedora     747.0   B
 glibc                             x86_64 2.40-28.fc41                updates      6.7 MiB
 glibc-common                      x86_64 2.40-28.fc41                updates      1.0 MiB
 glibc-gconv-extra                 x86_64 2.40-28.fc41                updates      8.0 MiB
 gmp                               x86_64 1:6.3.0-2.fc41              fedora     811.4 KiB
 gnat-srpm-macros                  noarch 6-6.fc41                    fedora       1.0 KiB
 go-srpm-macros                    noarch 3.8.0-1.fc41                updates     61.9 KiB
 jansson                           x86_64 2.13.1-10.fc41              fedora      88.3 KiB
 json-c                            x86_64 0.17-4.fc41                 fedora      82.4 KiB
 kernel-srpm-macros                noarch 1.0-24.fc41                 fedora       1.9 KiB
 keyutils-libs                     x86_64 1.6.3-4.fc41                fedora      54.4 KiB
 krb5-libs                         x86_64 1.21.3-5.fc41               updates      2.3 MiB
 libacl                            x86_64 2.3.2-2.fc41                fedora      40.0 KiB
 libarchive                        x86_64 3.7.4-4.fc41                updates    926.6 KiB
 libattr                           x86_64 2.5.2-4.fc41                fedora      28.5 KiB
 libblkid                          x86_64 2.40.4-1.fc41               updates    257.2 KiB
 libbrotli                         x86_64 1.1.0-5.fc41                fedora     837.6 KiB
 libcap                            x86_64 2.70-4.fc41                 fedora     220.2 KiB
 libcap-ng                         x86_64 0.8.5-3.fc41                fedora      69.2 KiB
 libcom_err                        x86_64 1.47.1-6.fc41               fedora      67.2 KiB
 libcurl                           x86_64 8.9.1-4.fc41                updates    822.1 KiB
 libeconf                          x86_64 0.6.2-3.fc41                fedora      58.0 KiB
 libevent                          x86_64 2.1.12-14.fc41              fedora     895.7 KiB
 libfdisk                          x86_64 2.40.4-1.fc41               updates    356.4 KiB
 libffi                            x86_64 3.4.6-3.fc41                fedora      86.4 KiB
 libgcc                            x86_64 14.3.1-3.fc41               updates    274.6 KiB
 libgomp                           x86_64 14.3.1-3.fc41               updates    523.6 KiB
 libidn2                           x86_64 2.3.8-1.fc41                updates    556.6 KiB
 libmount                          x86_64 2.40.4-1.fc41               updates    348.8 KiB
 libnghttp2                        x86_64 1.62.1-3.fc41               updates    174.1 KiB
 libnsl2                           x86_64 2.0.1-2.fc41                fedora      57.9 KiB
 libpkgconf                        x86_64 2.3.0-1.fc41                fedora      78.2 KiB
 libpsl                            x86_64 0.21.5-4.fc41               fedora      80.5 KiB
 libpwquality                      x86_64 1.4.5-11.fc41               fedora     417.8 KiB
 libselinux                        x86_64 3.7-5.fc41                  fedora     181.0 KiB
 libsemanage                       x86_64 3.7-2.fc41                  fedora     293.5 KiB
 libsepol                          x86_64 3.7-2.fc41                  fedora     817.8 KiB
 libsmartcols                      x86_64 2.40.4-1.fc41               updates    176.2 KiB
 libssh                            x86_64 0.11.3-1.fc41               updates    571.2 KiB
 libssh-config                     noarch 0.11.3-1.fc41               updates    277.0   B
 libstdc++                         x86_64 14.3.1-3.fc41               updates      2.8 MiB
 libtasn1                          x86_64 4.20.0-1.fc41               updates    180.4 KiB
 libtirpc                          x86_64 1.3.6-1.rc3.fc41            updates    197.6 KiB
 libtool-ltdl                      x86_64 2.4.7-12.fc41               fedora      66.2 KiB
 libunistring                      x86_64 1.1-8.fc41                  fedora       1.7 MiB
 libutempter                       x86_64 1.2.1-15.fc41               fedora      57.7 KiB
 libuuid                           x86_64 2.40.4-1.fc41               updates     39.9 KiB
 libverto                          x86_64 0.3.2-9.fc41                fedora      29.5 KiB
 libxcrypt                         x86_64 4.4.38-7.fc41               updates    288.5 KiB
 libxml2                           x86_64 2.12.10-1.fc41              updates      1.7 MiB
 libzstd                           x86_64 1.5.7-1.fc41                updates    804.0 KiB
 lua-libs                          x86_64 5.4.8-1.fc41                updates    285.0 KiB
 lua-srpm-macros                   noarch 1-14.fc41                   fedora       1.3 KiB
 lz4-libs                          x86_64 1.10.0-1.fc41               fedora     145.5 KiB
 mpfr                              x86_64 4.2.1-5.fc41                fedora     832.1 KiB
 ncurses-base                      noarch 6.5-2.20240629.fc41         fedora     326.3 KiB
 ncurses-libs                      x86_64 6.5-2.20240629.fc41         fedora     975.2 KiB
 ocaml-srpm-macros                 noarch 10-3.fc41                   fedora       1.9 KiB
 openblas-srpm-macros              noarch 2-18.fc41                   fedora     112.0   B
 openldap                          x86_64 2.6.10-1.fc41               updates    646.0 KiB
 openssl-libs                      x86_64 1:3.2.6-2.fc41              updates      7.8 MiB
 p11-kit                           x86_64 0.25.5-4.fc41               updates      2.2 MiB
 p11-kit-trust                     x86_64 0.25.5-4.fc41               updates    395.4 KiB
 package-notes-srpm-macros         noarch 0.5-12.fc41                 fedora       1.6 KiB
 pam                               x86_64 1.6.1-8.fc41                updates      1.8 MiB
 pam-libs                          x86_64 1.6.1-8.fc41                updates    139.0 KiB
 pcre2                             x86_64 10.44-1.fc41.1              fedora     653.5 KiB
 pcre2-syntax                      noarch 10.44-1.fc41.1              fedora     251.6 KiB
 perl-srpm-macros                  noarch 1-56.fc41                   fedora     861.0   B
 pkgconf                           x86_64 2.3.0-1.fc41                fedora      88.6 KiB
 pkgconf-m4                        noarch 2.3.0-1.fc41                fedora      14.4 KiB
 pkgconf-pkg-config                x86_64 2.3.0-1.fc41                fedora     989.0   B
 popt                              x86_64 1.19-7.fc41                 fedora     136.9 KiB
 publicsuffix-list-dafsa           noarch 20250616-1.fc41             updates     69.1 KiB
 pyproject-srpm-macros             noarch 1.18.4-1.fc41               updates      1.9 KiB
 python-srpm-macros                noarch 3.13-5.fc41                 updates     51.0 KiB
 qt5-srpm-macros                   noarch 5.15.17-1.fc41              updates    500.0   B
 qt6-srpm-macros                   noarch 6.8.3-1.fc41                updates    456.0   B
 readline                          x86_64 8.2-10.fc41                 fedora     493.2 KiB
 rpm                               x86_64 4.20.1-1.fc41               updates      3.1 MiB
 rpm-build-libs                    x86_64 4.20.1-1.fc41               updates    210.7 KiB
 rpm-libs                          x86_64 4.20.1-1.fc41               updates    730.0 KiB
 rpm-sequoia                       x86_64 1.7.0-5.fc41                updates      2.4 MiB
 rust-srpm-macros                  noarch 26.4-1.fc41                 updates      4.8 KiB
 setup                             noarch 2.15.0-8.fc41               updates    720.7 KiB
 sqlite-libs                       x86_64 3.46.1-5.fc41               updates      1.5 MiB
 systemd-libs                      x86_64 256.17-1.fc41               updates      2.0 MiB
 util-linux-core                   x86_64 2.40.4-1.fc41               updates      1.5 MiB
 xxhash-libs                       x86_64 0.8.3-1.fc41                updates     88.5 KiB
 xz-libs                           x86_64 1:5.8.1-2.fc41              updates    217.9 KiB
 zig-srpm-macros                   noarch 1-3.fc41                    fedora       1.1 KiB
 zip                               x86_64 3.0-41.fc41                 fedora     703.2 KiB
 zlib-ng-compat                    x86_64 2.2.3-2.fc41                updates    141.9 KiB
 zstd                              x86_64 1.5.7-1.fc41                updates      1.7 MiB
Installing groups:
 Buildsystem building group                                                               

Transaction Summary:
 Installing:       154 packages

Total size of inbound packages is 53 MiB. Need to download 0 B.
After this operation, 182 MiB extra will be used (install 182 MiB, remove 0 B).
[  1/154] tar-2:1.35-4.fc41.x86_64      100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[  2/154] bzip2-0:1.0.8-19.fc41.x86_64  100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[  3/154] unzip-0:6.0-64.fc41.x86_64    100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[  4/154] cpio-0:2.15-2.fc41.x86_64     100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[  5/154] which-0:2.21-42.fc41.x86_64   100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[  6/154] bash-0:5.2.32-1.fc41.x86_64   100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[  7/154] grep-0:3.11-9.fc41.x86_64     100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[  8/154] patch-0:2.7.6-25.fc41.x86_64  100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
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>>> Already downloaded                                                          
[151/154] openldap-0:2.6.10-1.fc41.x86_ 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[152/154] cyrus-sasl-lib-0:2.1.28-27.fc 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[153/154] libevent-0:2.1.12-14.fc41.x86 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[154/154] libtool-ltdl-0:2.4.7-12.fc41. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
--------------------------------------------------------------------------------
[154/154] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
Running transaction
Importing OpenPGP key 0xE99D6AD1:
 UserID     : "Fedora (41) <fedora-41-primary@fedoraproject.org>"
 Fingerprint: 466CF2D8B60BC3057AA9453ED0622462E99D6AD1
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-41-primary
The key was successfully imported.
[  1/156] Verify package files          100% | 962.0   B/s | 154.0   B |  00m00s
[  2/156] Prepare transaction           100% |   4.6 KiB/s | 154.0   B |  00m00s
[  3/156] Installing libgcc-0:14.3.1-3. 100% | 269.8 MiB/s | 276.3 KiB |  00m00s
[  4/156] Installing publicsuffix-list- 100% |   0.0   B/s |  69.8 KiB |  00m00s
[  5/156] Installing libssh-config-0:0. 100% |   0.0   B/s | 816.0   B |  00m00s
[  6/156] Installing fedora-release-ide 100% |   0.0   B/s | 912.0   B |  00m00s
[  7/156] Installing fedora-gpg-keys-0: 100% |  56.9 MiB/s | 174.8 KiB |  00m00s
[  8/156] Installing fedora-repos-0:41- 100% |   0.0   B/s |   5.7 KiB |  00m00s
[  9/156] Installing fedora-release-com 100% |  23.5 MiB/s |  24.0 KiB |  00m00s
[ 10/156] Installing fedora-release-0:4 100% |   0.0   B/s | 124.0   B |  00m00s
[ 11/156] Installing setup-0:2.15.0-8.f 100% |  64.5 MiB/s | 726.5 KiB |  00m00s
>>> [RPM] /etc/hosts created as /etc/hosts.rpmnew                               
[ 12/156] Installing filesystem-0:3.18- 100% |   4.2 MiB/s | 212.5 KiB |  00m00s
[ 13/156] Installing basesystem-0:11-21 100% |   0.0   B/s | 124.0   B |  00m00s
[ 14/156] Installing rust-srpm-macros-0 100% |   0.0   B/s |   5.6 KiB |  00m00s
[ 15/156] Installing qt6-srpm-macros-0: 100% |   0.0   B/s | 732.0   B |  00m00s
[ 16/156] Installing qt5-srpm-macros-0: 100% |   0.0   B/s | 776.0   B |  00m00s
[ 17/156] Installing pkgconf-m4-0:2.3.0 100% |   0.0   B/s |  14.8 KiB |  00m00s
[ 18/156] Installing pcre2-syntax-0:10. 100% | 248.1 MiB/s | 254.1 KiB |  00m00s
[ 19/156] Installing ncurses-base-0:6.5 100% | 114.5 MiB/s | 351.7 KiB |  00m00s
[ 20/156] Installing glibc-minimal-lang 100% |   0.0   B/s | 124.0   B |  00m00s
[ 21/156] Installing ncurses-libs-0:6.5 100% | 239.7 MiB/s | 981.8 KiB |  00m00s
[ 22/156] Installing glibc-0:2.40-28.fc 100% | 334.7 MiB/s |   6.7 MiB |  00m00s
[ 23/156] Installing bash-0:5.2.32-1.fc 100% | 480.5 MiB/s |   8.2 MiB |  00m00s
[ 24/156] Installing glibc-common-0:2.4 100% | 210.2 MiB/s |   1.1 MiB |  00m00s
[ 25/156] Installing glibc-gconv-extra- 100% | 321.7 MiB/s |   8.0 MiB |  00m00s
[ 26/156] Installing zlib-ng-compat-0:2 100% |   0.0   B/s | 142.7 KiB |  00m00s
[ 27/156] Installing bzip2-libs-0:1.0.8 100% |   0.0   B/s |  81.8 KiB |  00m00s
[ 28/156] Installing xz-libs-1:5.8.1-2. 100% | 213.9 MiB/s | 219.0 KiB |  00m00s
[ 29/156] Installing popt-0:1.19-7.fc41 100% |  70.1 MiB/s | 143.5 KiB |  00m00s
[ 30/156] Installing readline-0:8.2-10. 100% | 483.7 MiB/s | 495.3 KiB |  00m00s
[ 31/156] Installing libuuid-0:2.40.4-1 100% |   0.0   B/s |  41.0 KiB |  00m00s
[ 32/156] Installing libblkid-0:2.40.4- 100% | 252.1 MiB/s | 258.2 KiB |  00m00s
[ 33/156] Installing libattr-0:2.5.2-4. 100% |   0.0   B/s |  29.5 KiB |  00m00s
[ 34/156] Installing libacl-0:2.3.2-2.f 100% |   0.0   B/s |  40.7 KiB |  00m00s
[ 35/156] Installing gmp-1:6.3.0-2.fc41 100% | 397.3 MiB/s | 813.7 KiB |  00m00s
[ 36/156] Installing libxcrypt-0:4.4.38 100% | 284.4 MiB/s | 291.2 KiB |  00m00s
[ 37/156] Installing libzstd-0:1.5.7-1. 100% | 393.1 MiB/s | 805.1 KiB |  00m00s
[ 38/156] Installing elfutils-libelf-0: 100% | 390.1 MiB/s |   1.2 MiB |  00m00s
[ 39/156] Installing libstdc++-0:14.3.1 100% | 461.9 MiB/s |   2.8 MiB |  00m00s
[ 40/156] Installing libeconf-0:0.6.2-3 100% |   0.0   B/s |  59.7 KiB |  00m00s
[ 41/156] Installing gdbm-libs-1:1.23-7 100% | 120.7 MiB/s | 123.6 KiB |  00m00s
[ 42/156] Installing dwz-0:0.15-8.fc41. 100% | 293.3 MiB/s | 300.3 KiB |  00m00s
[ 43/156] Installing mpfr-0:4.2.1-5.fc4 100% | 407.1 MiB/s | 833.7 KiB |  00m00s
[ 44/156] Installing gawk-0:5.3.0-4.fc4 100% | 346.4 MiB/s |   1.7 MiB |  00m00s
[ 45/156] Installing unzip-0:6.0-64.fc4 100% | 381.1 MiB/s | 390.3 KiB |  00m00s
[ 46/156] Installing file-libs-0:5.45-7 100% | 764.2 MiB/s |   9.9 MiB |  00m00s
[ 47/156] Installing file-0:5.45-7.fc41 100% |  12.8 MiB/s | 105.0 KiB |  00m00s
[ 48/156] Installing crypto-policies-0: 100% |  41.5 MiB/s | 170.1 KiB |  00m00s
[ 49/156] Installing pcre2-0:10.44-1.fc 100% | 319.8 MiB/s | 654.9 KiB |  00m00s
[ 50/156] Installing grep-0:3.11-9.fc41 100% | 250.8 MiB/s |   1.0 MiB |  00m00s
[ 51/156] Installing xz-1:5.8.1-2.fc41. 100% | 267.1 MiB/s |   1.3 MiB |  00m00s
[ 52/156] Installing libcap-ng-0:0.8.5- 100% |   0.0   B/s |  71.0 KiB |  00m00s
[ 53/156] Installing audit-libs-0:4.1.1 100% | 380.7 MiB/s | 389.8 KiB |  00m00s
[ 54/156] Installing pam-libs-0:1.6.1-8 100% | 138.1 MiB/s | 141.4 KiB |  00m00s
[ 55/156] Installing libcap-0:2.70-4.fc 100% | 220.0 MiB/s | 225.2 KiB |  00m00s
[ 56/156] Installing systemd-libs-0:256 100% | 406.0 MiB/s |   2.0 MiB |  00m00s
[ 57/156] Installing libsepol-0:3.7-2.f 100% | 399.8 MiB/s | 818.8 KiB |  00m00s
[ 58/156] Installing libselinux-0:3.7-5 100% | 178.0 MiB/s | 182.3 KiB |  00m00s
[ 59/156] Installing sed-0:4.9-3.fc41.x 100% | 283.1 MiB/s | 869.7 KiB |  00m00s
[ 60/156] Installing findutils-1:4.10.0 100% | 371.6 MiB/s |   1.9 MiB |  00m00s
[ 61/156] Installing libmount-0:2.40.4- 100% | 341.6 MiB/s | 349.8 KiB |  00m00s
[ 62/156] Installing libsmartcols-0:2.4 100% | 173.2 MiB/s | 177.4 KiB |  00m00s
[ 63/156] Installing lua-libs-0:5.4.8-1 100% | 279.5 MiB/s | 286.2 KiB |  00m00s
[ 64/156] Installing lz4-libs-0:1.10.0- 100% | 143.1 MiB/s | 146.6 KiB |  00m00s
[ 65/156] Installing libcom_err-0:1.47. 100% |   0.0   B/s |  68.3 KiB |  00m00s
[ 66/156] Installing alternatives-0:1.3 100% |   0.0   B/s |  66.4 KiB |  00m00s
[ 67/156] Installing libffi-0:3.4.6-3.f 100% |   0.0   B/s |  87.8 KiB |  00m00s
[ 68/156] Installing libtasn1-0:4.20.0- 100% | 177.9 MiB/s | 182.2 KiB |  00m00s
[ 69/156] Installing p11-kit-0:0.25.5-4 100% | 315.9 MiB/s |   2.2 MiB |  00m00s
[ 70/156] Installing libunistring-0:1.1 100% | 432.7 MiB/s |   1.7 MiB |  00m00s
[ 71/156] Installing libidn2-0:2.3.8-1. 100% | 183.2 MiB/s | 562.8 KiB |  00m00s
[ 72/156] Installing libpsl-0:0.21.5-4. 100% |   0.0   B/s |  81.7 KiB |  00m00s
[ 73/156] Installing p11-kit-trust-0:0. 100% |  48.5 MiB/s | 397.1 KiB |  00m00s
[ 74/156] Installing zstd-0:1.5.7-1.fc4 100% | 427.5 MiB/s |   1.7 MiB |  00m00s
[ 75/156] Installing util-linux-core-0: 100% | 295.0 MiB/s |   1.5 MiB |  00m00s
[ 76/156] Installing tar-2:1.35-4.fc41. 100% | 422.6 MiB/s |   3.0 MiB |  00m00s
[ 77/156] Installing libsemanage-0:3.7- 100% | 144.2 MiB/s | 295.2 KiB |  00m00s
[ 78/156] Installing shadow-utils-2:4.1 100% | 181.1 MiB/s |   4.2 MiB |  00m00s
[ 79/156] Installing libutempter-0:1.2. 100% |  58.3 MiB/s |  59.7 KiB |  00m00s
[ 80/156] Installing zip-0:3.0-41.fc41. 100% | 345.2 MiB/s | 707.1 KiB |  00m00s
[ 81/156] Installing gdbm-1:1.23-7.fc41 100% | 227.4 MiB/s | 465.8 KiB |  00m00s
[ 82/156] Installing cyrus-sasl-lib-0:2 100% | 384.3 MiB/s |   2.3 MiB |  00m00s
[ 83/156] Installing libfdisk-0:2.40.4- 100% | 349.0 MiB/s | 357.4 KiB |  00m00s
[ 84/156] Installing libxml2-0:2.12.10- 100% | 430.1 MiB/s |   1.7 MiB |  00m00s
[ 85/156] Installing bzip2-0:1.0.8-19.f 100% |  97.8 MiB/s | 100.2 KiB |  00m00s
[ 86/156] Installing sqlite-libs-0:3.46 100% | 374.1 MiB/s |   1.5 MiB |  00m00s
[ 87/156] Installing add-determinism-0: 100% | 471.2 MiB/s |   2.4 MiB |  00m00s
[ 88/156] Installing build-reproducibil 100% |   0.0   B/s |   1.0 KiB |  00m00s
[ 89/156] Installing ed-0:1.20.2-2.fc41 100% | 145.7 MiB/s | 149.2 KiB |  00m00s
[ 90/156] Installing patch-0:2.7.6-25.f 100% | 261.9 MiB/s | 268.2 KiB |  00m00s
[ 91/156] Installing elfutils-default-y 100% | 408.6 KiB/s |   2.0 KiB |  00m00s
[ 92/156] Installing elfutils-libs-0:0. 100% | 336.2 MiB/s | 688.5 KiB |  00m00s
[ 93/156] Installing cpio-0:2.15-2.fc41 100% | 274.9 MiB/s |   1.1 MiB |  00m00s
[ 94/156] Installing diffutils-0:3.10-8 100% | 318.1 MiB/s |   1.6 MiB |  00m00s
[ 95/156] Installing json-c-0:0.17-4.fc 100% |  81.7 MiB/s |  83.6 KiB |  00m00s
[ 96/156] Installing libgomp-0:14.3.1-3 100% | 512.7 MiB/s | 525.0 KiB |  00m00s
[ 97/156] Installing jansson-0:2.13.1-1 100% |  87.6 MiB/s |  89.7 KiB |  00m00s
[ 98/156] Installing libpkgconf-0:2.3.0 100% |   0.0   B/s |  79.3 KiB |  00m00s
[ 99/156] Installing pkgconf-0:2.3.0-1. 100% |  89.0 MiB/s |  91.1 KiB |  00m00s
[100/156] Installing pkgconf-pkg-config 100% |   0.0   B/s |   1.8 KiB |  00m00s
[101/156] Installing keyutils-libs-0:1. 100% |   0.0   B/s |  55.8 KiB |  00m00s
[102/156] Installing libverto-0:0.3.2-9 100% |   0.0   B/s |  31.3 KiB |  00m00s
[103/156] Installing xxhash-libs-0:0.8. 100% |   0.0   B/s |  89.9 KiB |  00m00s
[104/156] Installing libbrotli-0:1.1.0- 100% | 410.1 MiB/s | 839.9 KiB |  00m00s
[105/156] Installing libnghttp2-0:1.62. 100% | 171.2 MiB/s | 175.3 KiB |  00m00s
[106/156] Installing libtool-ltdl-0:2.4 100% |  65.7 MiB/s |  67.3 KiB |  00m00s
[107/156] Installing coreutils-common-0 100% | 447.6 MiB/s |  11.2 MiB |  00m00s
[108/156] Installing openssl-libs-1:3.2 100% | 489.8 MiB/s |   7.8 MiB |  00m00s
[109/156] Installing coreutils-0:9.5-12 100% | 277.1 MiB/s |   5.5 MiB |  00m00s
[110/156] Installing ca-certificates-0: 100% |   4.3 MiB/s |   2.4 MiB |  00m01s
[111/156] Installing krb5-libs-0:1.21.3 100% | 331.3 MiB/s |   2.3 MiB |  00m00s
[112/156] Installing libarchive-0:3.7.4 100% | 302.3 MiB/s | 928.6 KiB |  00m00s
[113/156] Installing libtirpc-0:1.3.6-1 100% | 194.7 MiB/s | 199.4 KiB |  00m00s
[114/156] Installing gzip-0:1.13-2.fc41 100% | 192.7 MiB/s | 394.6 KiB |  00m00s
[115/156] Installing authselect-libs-0: 100% | 204.4 MiB/s | 837.2 KiB |  00m00s
[116/156] Installing cracklib-0:2.9.11- 100% |  81.5 MiB/s | 250.3 KiB |  00m00s
[117/156] Installing libpwquality-0:1.4 100% | 140.0 MiB/s | 430.1 KiB |  00m00s
[118/156] Installing libnsl2-0:2.0.1-2. 100% |  57.7 MiB/s |  59.1 KiB |  00m00s
[119/156] Installing pam-0:1.6.1-8.fc41 100% | 185.9 MiB/s |   1.9 MiB |  00m00s
[120/156] Installing libssh-0:0.11.3-1. 100% | 279.9 MiB/s | 573.3 KiB |  00m00s
[121/156] Installing rpm-sequoia-0:1.7. 100% | 403.1 MiB/s |   2.4 MiB |  00m00s
[122/156] Installing rpm-libs-0:4.20.1- 100% | 357.2 MiB/s | 731.5 KiB |  00m00s
[123/156] Installing rpm-build-libs-0:4 100% | 206.6 MiB/s | 211.5 KiB |  00m00s
[124/156] Installing libevent-0:2.1.12- 100% | 292.8 MiB/s | 899.5 KiB |  00m00s
[125/156] Installing openldap-0:2.6.10- 100% | 317.3 MiB/s | 649.7 KiB |  00m00s
[126/156] Installing libcurl-0:8.9.1-4. 100% | 402.0 MiB/s | 823.2 KiB |  00m00s
[127/156] Installing elfutils-debuginfo 100% |  84.4 MiB/s |  86.5 KiB |  00m00s
[128/156] Installing elfutils-0:0.193-2 100% | 424.1 MiB/s |   3.0 MiB |  00m00s
[129/156] Installing binutils-0:2.43.1- 100% | 417.8 MiB/s |  27.6 MiB |  00m00s
[130/156] Installing gdb-minimal-0:16.3 100% | 442.0 MiB/s |  13.3 MiB |  00m00s
[131/156] Installing debugedit-0:5.1-6. 100% | 198.9 MiB/s | 203.6 KiB |  00m00s
[132/156] Installing curl-0:8.9.1-4.fc4 100% |  70.9 MiB/s | 798.6 KiB |  00m00s
[133/156] Installing rpm-0:4.20.1-1.fc4 100% | 209.4 MiB/s |   2.5 MiB |  00m00s
[134/156] Installing lua-srpm-macros-0: 100% |   0.0   B/s |   1.9 KiB |  00m00s
[135/156] Installing zig-srpm-macros-0: 100% |   0.0   B/s |   1.7 KiB |  00m00s
[136/156] Installing efi-srpm-macros-0: 100% |   0.0   B/s |  41.2 KiB |  00m00s
[137/156] Installing perl-srpm-macros-0 100% |   0.0   B/s |   1.1 KiB |  00m00s
[138/156] Installing package-notes-srpm 100% |   0.0   B/s |   2.0 KiB |  00m00s
[139/156] Installing openblas-srpm-macr 100% |   0.0   B/s | 392.0   B |  00m00s
[140/156] Installing ocaml-srpm-macros- 100% |   0.0   B/s |   2.2 KiB |  00m00s
[141/156] Installing kernel-srpm-macros 100% |   0.0   B/s |   2.3 KiB |  00m00s
[142/156] Installing gnat-srpm-macros-0 100% |   0.0   B/s |   1.3 KiB |  00m00s
[143/156] Installing ghc-srpm-macros-0: 100% |   0.0   B/s |   1.0 KiB |  00m00s
[144/156] Installing fpc-srpm-macros-0: 100% |   0.0   B/s | 420.0   B |  00m00s
[145/156] Installing ansible-srpm-macro 100% |   0.0   B/s |  36.2 KiB |  00m00s
[146/156] Installing fonts-srpm-macros- 100% |   0.0   B/s |  57.0 KiB |  00m00s
[147/156] Installing forge-srpm-macros- 100% |   0.0   B/s |  40.3 KiB |  00m00s
[148/156] Installing go-srpm-macros-0:3 100% |   0.0   B/s |  63.0 KiB |  00m00s
[149/156] Installing python-srpm-macros 100% |   0.0   B/s |  52.2 KiB |  00m00s
[150/156] Installing redhat-rpm-config- 100% |  92.9 MiB/s | 190.2 KiB |  00m00s
[151/156] Installing rpm-build-0:4.20.1 100% |  98.8 MiB/s | 202.3 KiB |  00m00s
[152/156] Installing pyproject-srpm-mac 100% |   2.4 MiB/s |   2.5 KiB |  00m00s
[153/156] Installing util-linux-0:2.40. 100% | 185.3 MiB/s |   3.7 MiB |  00m00s
[154/156] Installing authselect-0:1.5.0 100% | 158.1 MiB/s | 161.9 KiB |  00m00s
[155/156] Installing which-0:2.21-42.fc 100% |  80.5 MiB/s |  82.4 KiB |  00m00s
[156/156] Installing info-0:7.1.1-1.fc4 100% | 484.8 KiB/s | 362.2 KiB |  00m01s
Complete!
Finish: installing minimal buildroot with dnf5
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: add-determinism-0.3.6-3.fc41.x86_64
alternatives-1.31-1.fc41.x86_64
ansible-srpm-macros-1-16.fc41.noarch
audit-libs-4.1.1-1.fc41.x86_64
authselect-1.5.0-8.fc41.x86_64
authselect-libs-1.5.0-8.fc41.x86_64
basesystem-11-21.fc41.noarch
bash-5.2.32-1.fc41.x86_64
binutils-2.43.1-8.fc41.x86_64
build-reproducibility-srpm-macros-0.3.6-3.fc41.noarch
bzip2-1.0.8-19.fc41.x86_64
bzip2-libs-1.0.8-19.fc41.x86_64
ca-certificates-2024.2.69_v8.0.401-1.0.fc41.noarch
coreutils-9.5-12.fc41.x86_64
coreutils-common-9.5-12.fc41.x86_64
cpio-2.15-2.fc41.x86_64
cracklib-2.9.11-6.fc41.x86_64
crypto-policies-20250707-1.git836bbee.fc41.noarch
curl-8.9.1-4.fc41.x86_64
cyrus-sasl-lib-2.1.28-27.fc41.x86_64
debugedit-5.1-6.fc41.x86_64
diffutils-3.10-8.fc41.x86_64
dwz-0.15-8.fc41.x86_64
ed-1.20.2-2.fc41.x86_64
efi-srpm-macros-5-13.fc41.noarch
elfutils-0.193-2.fc41.x86_64
elfutils-debuginfod-client-0.193-2.fc41.x86_64
elfutils-default-yama-scope-0.193-2.fc41.noarch
elfutils-libelf-0.193-2.fc41.x86_64
elfutils-libs-0.193-2.fc41.x86_64
fedora-gpg-keys-41-3.noarch
fedora-release-41-33.noarch
fedora-release-common-41-33.noarch
fedora-release-identity-basic-41-33.noarch
fedora-repos-41-3.noarch
file-5.45-7.fc41.x86_64
file-libs-5.45-7.fc41.x86_64
filesystem-3.18-23.fc41.x86_64
findutils-4.10.0-4.fc41.x86_64
fonts-srpm-macros-2.0.5-17.fc41.noarch
forge-srpm-macros-0.4.0-1.fc41.noarch
fpc-srpm-macros-1.3-13.fc41.noarch
gawk-5.3.0-4.fc41.x86_64
gdb-minimal-16.3-1.fc41.x86_64
gdbm-1.23-7.fc41.x86_64
gdbm-libs-1.23-7.fc41.x86_64
ghc-srpm-macros-1.9.1-2.fc41.noarch
glibc-2.40-28.fc41.x86_64
glibc-common-2.40-28.fc41.x86_64
glibc-gconv-extra-2.40-28.fc41.x86_64
glibc-minimal-langpack-2.40-28.fc41.x86_64
gmp-6.3.0-2.fc41.x86_64
gnat-srpm-macros-6-6.fc41.noarch
go-srpm-macros-3.8.0-1.fc41.noarch
gpg-pubkey-e99d6ad1-64d2612c
grep-3.11-9.fc41.x86_64
gzip-1.13-2.fc41.x86_64
info-7.1.1-1.fc41.x86_64
jansson-2.13.1-10.fc41.x86_64
json-c-0.17-4.fc41.x86_64
kernel-srpm-macros-1.0-24.fc41.noarch
keyutils-libs-1.6.3-4.fc41.x86_64
krb5-libs-1.21.3-5.fc41.x86_64
libacl-2.3.2-2.fc41.x86_64
libarchive-3.7.4-4.fc41.x86_64
libattr-2.5.2-4.fc41.x86_64
libblkid-2.40.4-1.fc41.x86_64
libbrotli-1.1.0-5.fc41.x86_64
libcap-2.70-4.fc41.x86_64
libcap-ng-0.8.5-3.fc41.x86_64
libcom_err-1.47.1-6.fc41.x86_64
libcurl-8.9.1-4.fc41.x86_64
libeconf-0.6.2-3.fc41.x86_64
libevent-2.1.12-14.fc41.x86_64
libfdisk-2.40.4-1.fc41.x86_64
libffi-3.4.6-3.fc41.x86_64
libgcc-14.3.1-3.fc41.x86_64
libgomp-14.3.1-3.fc41.x86_64
libidn2-2.3.8-1.fc41.x86_64
libmount-2.40.4-1.fc41.x86_64
libnghttp2-1.62.1-3.fc41.x86_64
libnsl2-2.0.1-2.fc41.x86_64
libpkgconf-2.3.0-1.fc41.x86_64
libpsl-0.21.5-4.fc41.x86_64
libpwquality-1.4.5-11.fc41.x86_64
libselinux-3.7-5.fc41.x86_64
libsemanage-3.7-2.fc41.x86_64
libsepol-3.7-2.fc41.x86_64
libsmartcols-2.40.4-1.fc41.x86_64
libssh-0.11.3-1.fc41.x86_64
libssh-config-0.11.3-1.fc41.noarch
libstdc++-14.3.1-3.fc41.x86_64
libtasn1-4.20.0-1.fc41.x86_64
libtirpc-1.3.6-1.rc3.fc41.x86_64
libtool-ltdl-2.4.7-12.fc41.x86_64
libunistring-1.1-8.fc41.x86_64
libutempter-1.2.1-15.fc41.x86_64
libuuid-2.40.4-1.fc41.x86_64
libverto-0.3.2-9.fc41.x86_64
libxcrypt-4.4.38-7.fc41.x86_64
libxml2-2.12.10-1.fc41.x86_64
libzstd-1.5.7-1.fc41.x86_64
lua-libs-5.4.8-1.fc41.x86_64
lua-srpm-macros-1-14.fc41.noarch
lz4-libs-1.10.0-1.fc41.x86_64
mpfr-4.2.1-5.fc41.x86_64
ncurses-base-6.5-2.20240629.fc41.noarch
ncurses-libs-6.5-2.20240629.fc41.x86_64
ocaml-srpm-macros-10-3.fc41.noarch
openblas-srpm-macros-2-18.fc41.noarch
openldap-2.6.10-1.fc41.x86_64
openssl-libs-3.2.6-2.fc41.x86_64
p11-kit-0.25.5-4.fc41.x86_64
p11-kit-trust-0.25.5-4.fc41.x86_64
package-notes-srpm-macros-0.5-12.fc41.noarch
pam-1.6.1-8.fc41.x86_64
pam-libs-1.6.1-8.fc41.x86_64
patch-2.7.6-25.fc41.x86_64
pcre2-10.44-1.fc41.1.x86_64
pcre2-syntax-10.44-1.fc41.1.noarch
perl-srpm-macros-1-56.fc41.noarch
pkgconf-2.3.0-1.fc41.x86_64
pkgconf-m4-2.3.0-1.fc41.noarch
pkgconf-pkg-config-2.3.0-1.fc41.x86_64
popt-1.19-7.fc41.x86_64
publicsuffix-list-dafsa-20250616-1.fc41.noarch
pyproject-srpm-macros-1.18.4-1.fc41.noarch
python-srpm-macros-3.13-5.fc41.noarch
qt5-srpm-macros-5.15.17-1.fc41.noarch
qt6-srpm-macros-6.8.3-1.fc41.noarch
readline-8.2-10.fc41.x86_64
redhat-rpm-config-294-1.fc41.noarch
rpm-4.20.1-1.fc41.x86_64
rpm-build-4.20.1-1.fc41.x86_64
rpm-build-libs-4.20.1-1.fc41.x86_64
rpm-libs-4.20.1-1.fc41.x86_64
rpm-sequoia-1.7.0-5.fc41.x86_64
rust-srpm-macros-26.4-1.fc41.noarch
sed-4.9-3.fc41.x86_64
setup-2.15.0-8.fc41.noarch
shadow-utils-4.15.1-12.fc41.x86_64
sqlite-libs-3.46.1-5.fc41.x86_64
systemd-libs-256.17-1.fc41.x86_64
tar-1.35-4.fc41.x86_64
unzip-6.0-64.fc41.x86_64
util-linux-2.40.4-1.fc41.x86_64
util-linux-core-2.40.4-1.fc41.x86_64
which-2.21-42.fc41.x86_64
xxhash-libs-0.8.3-1.fc41.x86_64
xz-5.8.1-2.fc41.x86_64
xz-libs-5.8.1-2.fc41.x86_64
zig-srpm-macros-1-3.fc41.noarch
zip-3.0-41.fc41.x86_64
zlib-ng-compat-2.2.3-2.fc41.x86_64
zstd-1.5.7-1.fc41.x86_64
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1761523200
Wrote: /builddir/build/SRPMS/python-pyhmmer-0.11.2-1.fc41.src.rpm
Finish: rpmbuild -bs
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-41-x86_64-1761574193.789442/root/var/log/dnf5.log
INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz
/bin/tar: Removing leading `/' from member names
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-p9bf3nxn/python-pyhmmer/python-pyhmmer.spec) Config(child) 0 minutes 9 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/python-pyhmmer-0.11.2-1.fc41.src.rpm)  Config(fedora-41-x86_64)
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-bootstrap-1761574193.789442/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-41-x86_64-bootstrap-1761574193.789442/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-1761574193.789442/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.20.1-1.fc41.x86_64
  rpm-sequoia-1.7.0-5.fc41.x86_64
  dnf5-5.2.16.0-1.fc41.x86_64
  dnf5-plugins-5.2.16.0-1.fc41.x86_64
Finish: chroot init
Start: build phase for python-pyhmmer-0.11.2-1.fc41.src.rpm
Start: build setup for python-pyhmmer-0.11.2-1.fc41.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1761523200
Wrote: /builddir/build/SRPMS/python-pyhmmer-0.11.2-1.fc41.src.rpm
Updating and loading repositories:
 Copr repository                        100% | 118.5 KiB/s |   1.5 KiB |  00m00s
 fedora                                 100% |  95.3 KiB/s |  32.4 KiB |  00m00s
 updates                                100% |  75.3 KiB/s |   6.8 KiB |  00m00s
Repositories loaded.
Package                 Arch   Version         Repository      Size
Installing:
 gcc                    x86_64 14.3.1-3.fc41   updates    104.3 MiB
 python3-devel          x86_64 3.13.9-1.fc41   updates      1.8 MiB
Installing dependencies:
 annobin-docs           noarch 12.69-1.fc41    fedora      97.7 KiB
 annobin-plugin-gcc     x86_64 12.69-1.fc41    fedora     985.0 KiB
 cpp                    x86_64 14.3.1-3.fc41   updates     35.0 MiB
 expat                  x86_64 2.7.2-1.fc41    updates    306.8 KiB
 gcc-plugin-annobin     x86_64 14.3.1-3.fc41   updates     61.1 KiB
 glibc-devel            x86_64 2.40-28.fc41    updates      2.3 MiB
 kernel-headers         x86_64 6.17.4-100.fc41 updates      6.7 MiB
 libb2                  x86_64 0.98.1-12.fc41  fedora      42.2 KiB
 libmpc                 x86_64 1.3.1-6.fc41    fedora     164.7 KiB
 libxcrypt-devel        x86_64 4.4.38-7.fc41   updates     30.8 KiB
 make                   x86_64 1:4.4.1-8.fc41  fedora       1.8 MiB
 mpdecimal              x86_64 2.5.1-16.fc41   fedora     204.9 KiB
 pyproject-rpm-macros   noarch 1.18.4-1.fc41   updates    114.9 KiB
 python-pip-wheel       noarch 24.2-3.fc41     updates      1.2 MiB
 python-rpm-macros      noarch 3.13-5.fc41     updates     22.1 KiB
 python3                x86_64 3.13.9-1.fc41   updates     32.8 KiB
 python3-libs           x86_64 3.13.9-1.fc41   updates     40.6 MiB
 python3-packaging      noarch 25.0-1.fc41     copr_base  536.9 KiB
 python3-rpm-generators noarch 14-11.fc41      fedora      81.7 KiB
 python3-rpm-macros     noarch 3.13-5.fc41     updates      6.4 KiB
 tzdata                 noarch 2025b-1.fc41    updates      1.6 MiB

Transaction Summary:
 Installing:        23 packages

Total size of inbound packages is 65 MiB. Need to download 53 MiB.
After this operation, 198 MiB extra will be used (install 198 MiB, remove 0 B).
[ 1/23] python3-devel-0:3.13.9-1.fc41.x 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 2/23] python3-libs-0:3.13.9-1.fc41.x8 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 3/23] libb2-0:0.98.1-12.fc41.x86_64   100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 4/23] mpdecimal-0:2.5.1-16.fc41.x86_6 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 5/23] expat-0:2.7.2-1.fc41.x86_64     100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 6/23] python-pip-wheel-0:24.2-3.fc41. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 7/23] tzdata-0:2025b-1.fc41.noarch    100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 8/23] python3-0:3.13.9-1.fc41.x86_64  100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 9/23] pyproject-rpm-macros-0:1.18.4-1 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[10/23] python-rpm-macros-0:3.13-5.fc41 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[11/23] python3-rpm-generators-0:14-11. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[12/23] python3-rpm-macros-0:3.13-5.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[13/23] python3-packaging-0:25.0-1.fc41 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[14/23] libmpc-0:1.3.1-6.fc41.x86_64    100% |   5.0 MiB/s |  71.1 KiB |  00m00s
[15/23] make-1:4.4.1-8.fc41.x86_64      100% |  26.0 MiB/s | 586.1 KiB |  00m00s
[16/23] glibc-devel-0:2.40-28.fc41.x86_ 100% |  72.5 MiB/s | 593.6 KiB |  00m00s
[17/23] kernel-headers-0:6.17.4-100.fc4 100% |  65.2 MiB/s |   1.7 MiB |  00m00s
[18/23] libxcrypt-devel-0:4.4.38-7.fc41 100% |   5.7 MiB/s |  29.4 KiB |  00m00s
[19/23] annobin-plugin-gcc-0:12.69-1.fc 100% |  52.7 MiB/s | 971.0 KiB |  00m00s
[20/23] cpp-0:14.3.1-3.fc41.x86_64      100% | 147.6 MiB/s |  12.0 MiB |  00m00s
[21/23] gcc-plugin-annobin-0:14.3.1-3.f 100% |   4.6 MiB/s |  66.5 KiB |  00m00s
[22/23] annobin-docs-0:12.69-1.fc41.noa 100% |  12.8 MiB/s |  91.8 KiB |  00m00s
[23/23] gcc-0:14.3.1-3.fc41.x86_64      100% | 135.4 MiB/s |  37.0 MiB |  00m00s
--------------------------------------------------------------------------------
[23/23] Total                           100% | 185.8 MiB/s |  53.0 MiB |  00m00s
Running transaction
[ 1/25] Verify package files            100% | 132.0   B/s |  23.0   B |  00m00s
[ 2/25] Prepare transaction             100% | 793.0   B/s |  23.0   B |  00m00s
[ 3/25] Installing python-rpm-macros-0: 100% |   0.0   B/s |  22.8 KiB |  00m00s
[ 4/25] Installing python3-rpm-macros-0 100% |   0.0   B/s |   6.7 KiB |  00m00s
[ 5/25] Installing libmpc-0:1.3.1-6.fc4 100% | 162.3 MiB/s | 166.2 KiB |  00m00s
[ 6/25] Installing cpp-0:14.3.1-3.fc41. 100% | 426.8 MiB/s |  35.0 MiB |  00m00s
[ 7/25] Installing pyproject-rpm-macros 100% | 114.1 MiB/s | 116.8 KiB |  00m00s
[ 8/25] Installing annobin-docs-0:12.69 100% |  48.2 MiB/s |  98.8 KiB |  00m00s
[ 9/25] Installing kernel-headers-0:6.1 100% | 254.6 MiB/s |   6.9 MiB |  00m00s
[10/25] Installing libxcrypt-devel-0:4. 100% |  32.3 MiB/s |  33.1 KiB |  00m00s
[11/25] Installing glibc-devel-0:2.40-2 100% | 166.0 MiB/s |   2.3 MiB |  00m00s
[12/25] Installing tzdata-0:2025b-1.fc4 100% |  72.8 MiB/s |   1.9 MiB |  00m00s
[13/25] Installing python-pip-wheel-0:2 100% | 620.9 MiB/s |   1.2 MiB |  00m00s
[14/25] Installing expat-0:2.7.2-1.fc41 100% | 301.6 MiB/s | 308.9 KiB |  00m00s
[15/25] Installing mpdecimal-0:2.5.1-16 100% | 201.2 MiB/s | 206.0 KiB |  00m00s
[16/25] Installing libb2-0:0.98.1-12.fc 100% |  10.6 MiB/s |  43.3 KiB |  00m00s
[17/25] Installing python3-libs-0:3.13. 100% | 394.1 MiB/s |  41.0 MiB |  00m00s
[18/25] Installing python3-0:3.13.9-1.f 100% |  33.8 MiB/s |  34.6 KiB |  00m00s
[19/25] Installing python3-packaging-0: 100% | 267.7 MiB/s | 548.2 KiB |  00m00s
[20/25] Installing python3-rpm-generato 100% |   0.0   B/s |  82.9 KiB |  00m00s
[21/25] Installing make-1:4.4.1-8.fc41. 100% | 300.0 MiB/s |   1.8 MiB |  00m00s
[22/25] Installing gcc-0:14.3.1-3.fc41. 100% | 474.4 MiB/s | 104.4 MiB |  00m00s
[23/25] Installing annobin-plugin-gcc-0 100% |  74.1 MiB/s | 986.7 KiB |  00m00s
[24/25] Installing gcc-plugin-annobin-0 100% |   4.7 MiB/s |  62.7 KiB |  00m00s
[25/25] Installing python3-devel-0:3.13 100% |  17.4 MiB/s |   1.8 MiB |  00m00s
Warning: skipped OpenPGP checks for 1 package from repository: copr_base
Complete!
Finish: build setup for python-pyhmmer-0.11.2-1.fc41.src.rpm
Start: rpmbuild python-pyhmmer-0.11.2-1.fc41.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1761523200
Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.W46aHL
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.NeQGvL
+ umask 022
+ cd /builddir/build/BUILD/python-pyhmmer-0.11.2-build
+ cd /builddir/build/BUILD/python-pyhmmer-0.11.2-build
+ rm -rf pyhmmer-0.11.2
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/pyhmmer-0.11.2.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd pyhmmer-0.11.2
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.NYauKA
+ umask 022
+ cd /builddir/build/BUILD/python-pyhmmer-0.11.2-build
+ cd pyhmmer-0.11.2
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(packaging)'
+ echo 'python3dist(pip) >= 19'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/python-pyhmmer-0.11.2-build/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ VALAFLAGS=-g
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ CC=gcc
+ CXX=g++
+ TMPDIR=/builddir/build/BUILD/python-pyhmmer-0.11.2-build/.pyproject-builddir
+ RPM_TOXENV=py313
+ FEDORA=41
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyproject-wheeldir --output /builddir/build/BUILD/python-pyhmmer-0.11.2-build/python-pyhmmer-0.11.2-1.fc41.x86_64-pyproject-buildrequires -x test
Handling scikit-build-core from build-system.requires
Requirement not satisfied: scikit-build-core
Handling cython >= 3.0 from build-system.requires
Requirement not satisfied: cython >= 3.0
Exiting dependency generation pass: build backend
+ cat /builddir/build/BUILD/python-pyhmmer-0.11.2-build/python-pyhmmer-0.11.2-1.fc41.x86_64-pyproject-buildrequires
+ rm -rfv '*.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/python-pyhmmer-0.11.2-1.fc41.buildreqs.nosrc.rpm
INFO: Going to install missing dynamic buildrequires
Updating and loading repositories:
 Copr repository                        100% | 140.0 KiB/s |   1.5 KiB |  00m00s
 updates                                100% |  45.2 KiB/s |   6.8 KiB |  00m00s
 fedora                                 100% | 483.9 KiB/s |  32.4 KiB |  00m00s
Repositories loaded.
Package "gcc-14.3.1-3.fc41.x86_64" is already installed.
Package "pyproject-rpm-macros-1.18.4-1.fc41.noarch" is already installed.
Package "python3-devel-3.13.9-1.fc41.x86_64" is already installed.
Package "python3-packaging-25.0-1.fc41.noarch" is already installed.

Package                    Arch   Version           Repository      Size
Installing:
 python3-cython            x86_64 3.1.6-1.fc41      copr_base   17.6 MiB
 python3-pip               noarch 24.2-3.fc41       updates     11.4 MiB
 python3-scikit-build-core noarch 0.11.0-1.fc41     updates      1.3 MiB
Installing dependencies:
 cmake                     x86_64 3.30.8-1.fc41     updates     32.7 MiB
 cmake-data                noarch 3.30.8-1.fc41     updates      8.2 MiB
 cmake-filesystem          x86_64 3.30.8-1.fc41     updates      0.0   B
 cmake-rpm-macros          noarch 3.30.8-1.fc41     updates      7.7 KiB
 emacs-filesystem          noarch 1:30.0-3.fc41     fedora       0.0   B
 jsoncpp                   x86_64 1.9.5-8.fc41      fedora     253.4 KiB
 libuv                     x86_64 1:1.51.0-1.fc41   updates    571.7 KiB
 ninja-build               x86_64 1.12.1-3.fc41     fedora     432.6 KiB
 python3-pathspec          noarch 0.12.1-6.fc41     fedora     195.2 KiB
 rhash                     x86_64 1.4.4-2.fc41      fedora     349.9 KiB
 vim-filesystem            noarch 2:9.1.1863-1.fc41 updates     40.0   B

Transaction Summary:
 Installing:        14 packages

Total size of inbound packages is 21 MiB. Need to download 21 MiB.
After this operation, 73 MiB extra will be used (install 73 MiB, remove 0 B).
[ 1/14] python3-cython-0:3.1.6-1.fc41.x 100% | 102.1 MiB/s |   3.6 MiB |  00m00s
[ 2/14] ninja-build-0:1.12.1-3.fc41.x86 100% |  17.6 MiB/s | 180.0 KiB |  00m00s
[ 3/14] python3-pathspec-0:0.12.1-6.fc4 100% |  20.1 MiB/s |  61.9 KiB |  00m00s
[ 4/14] emacs-filesystem-1:30.0-3.fc41. 100% |   3.5 MiB/s |   7.1 KiB |  00m00s
[ 5/14] vim-filesystem-2:9.1.1863-1.fc4 100% |  15.0 MiB/s |  15.4 KiB |  00m00s
[ 6/14] python3-scikit-build-core-0:0.1 100% |   4.4 MiB/s | 350.4 KiB |  00m00s
[ 7/14] python3-pip-0:24.2-3.fc41.noarc 100% |  30.4 MiB/s |   2.7 MiB |  00m00s
[ 8/14] cmake-0:3.30.8-1.fc41.x86_64    100% | 217.4 MiB/s |  10.9 MiB |  00m00s
[ 9/14] cmake-data-0:3.30.8-1.fc41.noar 100% |  86.7 MiB/s |   2.3 MiB |  00m00s
[10/14] cmake-filesystem-0:3.30.8-1.fc4 100% |   1.0 MiB/s |  16.8 KiB |  00m00s
[11/14] jsoncpp-0:1.9.5-8.fc41.x86_64   100% |  19.4 MiB/s |  99.3 KiB |  00m00s
[12/14] rhash-0:1.4.4-2.fc41.x86_64     100% |  47.8 MiB/s | 196.0 KiB |  00m00s
[13/14] libuv-1:1.51.0-1.fc41.x86_64    100% |  52.0 MiB/s | 266.0 KiB |  00m00s
[14/14] cmake-rpm-macros-0:3.30.8-1.fc4 100% |   5.3 MiB/s |  16.3 KiB |  00m00s
--------------------------------------------------------------------------------
[14/14] Total                           100% | 181.3 MiB/s |  20.7 MiB |  00m00s
Running transaction
[ 1/16] Verify package files            100% | 245.0   B/s |  14.0   B |  00m00s
[ 2/16] Prepare transaction             100% | 368.0   B/s |  14.0   B |  00m00s
[ 3/16] Installing cmake-rpm-macros-0:3 100% |   0.0   B/s |   8.3 KiB |  00m00s
[ 4/16] Installing cmake-filesystem-0:3 100% |   7.1 MiB/s |   7.3 KiB |  00m00s
[ 5/16] Installing vim-filesystem-2:9.1 100% |   0.0   B/s |   4.7 KiB |  00m00s
[ 6/16] Installing emacs-filesystem-1:3 100% |   0.0   B/s | 544.0   B |  00m00s
[ 7/16] Installing ninja-build-0:1.12.1 100% | 212.8 MiB/s | 435.8 KiB |  00m00s
[ 8/16] Installing libuv-1:1.51.0-1.fc4 100% | 280.5 MiB/s | 574.5 KiB |  00m00s
[ 9/16] Installing rhash-0:1.4.4-2.fc41 100% | 173.4 MiB/s | 355.1 KiB |  00m00s
[10/16] Installing jsoncpp-0:1.9.5-8.fc 100% | 249.0 MiB/s | 254.9 KiB |  00m00s
[11/16] Installing cmake-0:3.30.8-1.fc4 100% | 403.9 MiB/s |  32.7 MiB |  00m00s
[12/16] Installing cmake-data-0:3.30.8- 100% | 144.2 MiB/s |   8.8 MiB |  00m00s
[13/16] Installing python3-pathspec-0:0 100% |  98.7 MiB/s | 202.0 KiB |  00m00s
[14/16] Installing python3-scikit-build 100% | 135.3 MiB/s |   1.4 MiB |  00m00s
[15/16] Installing python3-pip-0:24.2-3 100% | 271.2 MiB/s |  11.7 MiB |  00m00s
[16/16] Installing python3-cython-0:3.1 100% | 316.5 MiB/s |  17.7 MiB |  00m00s
Warning: skipped OpenPGP checks for 1 package from repository: copr_base
Complete!
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1761523200
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.MMICxm
+ umask 022
+ cd /builddir/build/BUILD/python-pyhmmer-0.11.2-build
+ cd pyhmmer-0.11.2
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(packaging)'
+ echo 'python3dist(pip) >= 19'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/python-pyhmmer-0.11.2-build/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ VALAFLAGS=-g
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ CC=gcc
+ CXX=g++
+ TMPDIR=/builddir/build/BUILD/python-pyhmmer-0.11.2-build/.pyproject-builddir
+ RPM_TOXENV=py313
+ FEDORA=41
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyproject-wheeldir --output /builddir/build/BUILD/python-pyhmmer-0.11.2-build/python-pyhmmer-0.11.2-1.fc41.x86_64-pyproject-buildrequires -x test
Handling scikit-build-core from build-system.requires
Requirement satisfied: scikit-build-core
   (installed: scikit-build-core 0.11.0)
Handling cython >= 3.0 from build-system.requires
Requirement satisfied: cython >= 3.0
   (installed: cython 3.1.6)
2025-10-27 14:10:13,714 - scikit_build_core - WARNING - Unknown keys in top-level of pyproject.toml: tool.mypy-pyhmmer.tests.*
*** scikit-build-core 0.11.0 using CMake 3.30.8 (metadata_wheel)
Handling psutil<8.0,>=6.0 from hook generated metadata: Requires-Dist (pyhmmer)
Requirement not satisfied: psutil<8.0,>=6.0
Handling importlib-resources; python_version < "3.9" and extra == "test" from hook generated metadata: Requires-Dist (pyhmmer)
Ignoring alien requirement: importlib-resources; python_version < "3.9" and extra == "test"
+ cat /builddir/build/BUILD/python-pyhmmer-0.11.2-build/python-pyhmmer-0.11.2-1.fc41.x86_64-pyproject-buildrequires
+ rm -rfv pyhmmer-0.11.2.dist-info/
removed 'pyhmmer-0.11.2.dist-info/licenses/COPYING'
removed directory 'pyhmmer-0.11.2.dist-info/licenses'
removed 'pyhmmer-0.11.2.dist-info/WHEEL'
removed 'pyhmmer-0.11.2.dist-info/METADATA'
removed directory 'pyhmmer-0.11.2.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/python-pyhmmer-0.11.2-1.fc41.buildreqs.nosrc.rpm
INFO: Going to install missing dynamic buildrequires
Updating and loading repositories:
 Copr repository                        100% | 128.3 KiB/s |   1.5 KiB |  00m00s
 fedora                                 100% |  65.0 KiB/s |  32.4 KiB |  00m00s
 updates                                100% |  28.8 KiB/s |   6.8 KiB |  00m00s
Repositories loaded.
Package "gcc-14.3.1-3.fc41.x86_64" is already installed.
Package "pyproject-rpm-macros-1.18.4-1.fc41.noarch" is already installed.
Package "python3-devel-3.13.9-1.fc41.x86_64" is already installed.
Package "python3-cython-3.1.6-1.fc41.x86_64" is already installed.
Package "python3-packaging-25.0-1.fc41.noarch" is already installed.
Package "python3-pip-24.2-3.fc41.noarch" is already installed.
Package "python3-scikit-build-core-0.11.0-1.fc41.noarch" is already installed.

Package         Arch   Version      Repository      Size
Installing:
 python3-psutil x86_64 6.0.0-1.fc41 copr_base    3.0 MiB

Transaction Summary:
 Installing:         1 package

Total size of inbound packages is 518 KiB. Need to download 518 KiB.
After this operation, 3 MiB extra will be used (install 3 MiB, remove 0 B).
[1/1] python3-psutil-0:6.0.0-1.fc41.x86 100% |   7.3 MiB/s | 518.3 KiB |  00m00s
--------------------------------------------------------------------------------
[1/1] Total                             100% |   7.2 MiB/s | 518.3 KiB |  00m00s
Running transaction
[1/3] Verify package files              100% |   1.0 KiB/s |   1.0   B |  00m00s
[2/3] Prepare transaction               100% |  66.0   B/s |   1.0   B |  00m00s
[3/3] Installing python3-psutil-0:6.0.0 100% | 200.1 MiB/s |   3.0 MiB |  00m00s
Warning: skipped OpenPGP checks for 1 package from repository: copr_base
Complete!
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1761523200
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.f5SHVZ
+ umask 022
+ cd /builddir/build/BUILD/python-pyhmmer-0.11.2-build
+ cd pyhmmer-0.11.2
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(packaging)'
+ echo 'python3dist(pip) >= 19'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/python-pyhmmer-0.11.2-build/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ VALAFLAGS=-g
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ CC=gcc
+ CXX=g++
+ TMPDIR=/builddir/build/BUILD/python-pyhmmer-0.11.2-build/.pyproject-builddir
+ RPM_TOXENV=py313
+ FEDORA=41
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyproject-wheeldir --output /builddir/build/BUILD/python-pyhmmer-0.11.2-build/python-pyhmmer-0.11.2-1.fc41.x86_64-pyproject-buildrequires -x test
Handling scikit-build-core from build-system.requires
Requirement satisfied: scikit-build-core
   (installed: scikit-build-core 0.11.0)
Handling cython >= 3.0 from build-system.requires
Requirement satisfied: cython >= 3.0
   (installed: cython 3.1.6)
2025-10-27 14:10:17,219 - scikit_build_core - WARNING - Unknown keys in top-level of pyproject.toml: tool.mypy-pyhmmer.tests.*
*** scikit-build-core 0.11.0 using CMake 3.30.8 (metadata_wheel)
Handling psutil<8.0,>=6.0 from hook generated metadata: Requires-Dist (pyhmmer)
Requirement satisfied: psutil<8.0,>=6.0
   (installed: psutil 6.0.0)
Handling importlib-resources; python_version < "3.9" and extra == "test" from hook generated metadata: Requires-Dist (pyhmmer)
Ignoring alien requirement: importlib-resources; python_version < "3.9" and extra == "test"
+ cat /builddir/build/BUILD/python-pyhmmer-0.11.2-build/python-pyhmmer-0.11.2-1.fc41.x86_64-pyproject-buildrequires
+ rm -rfv pyhmmer-0.11.2.dist-info/
removed 'pyhmmer-0.11.2.dist-info/licenses/COPYING'
removed directory 'pyhmmer-0.11.2.dist-info/licenses'
removed 'pyhmmer-0.11.2.dist-info/WHEEL'
removed 'pyhmmer-0.11.2.dist-info/METADATA'
removed directory 'pyhmmer-0.11.2.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/python-pyhmmer-0.11.2-1.fc41.buildreqs.nosrc.rpm
INFO: Going to install missing dynamic buildrequires
Updating and loading repositories:
 Copr repository                        100% | 102.7 KiB/s |   1.5 KiB |  00m00s
 updates                                100% |  34.4 KiB/s |   6.8 KiB |  00m00s
 fedora                                 100% | 426.6 KiB/s |  32.4 KiB |  00m00s
Repositories loaded.
Nothing to do.
Package "gcc-14.3.1-3.fc41.x86_64" is already installed.
Package "pyproject-rpm-macros-1.18.4-1.fc41.noarch" is already installed.
Package "python3-devel-3.13.9-1.fc41.x86_64" is already installed.
Package "python3-cython-3.1.6-1.fc41.x86_64" is already installed.
Package "python3-packaging-25.0-1.fc41.noarch" is already installed.
Package "python3-pip-24.2-3.fc41.noarch" is already installed.
Package "python3-scikit-build-core-0.11.0-1.fc41.noarch" is already installed.

Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1761523200
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.TkeLBi
+ umask 022
+ cd /builddir/build/BUILD/python-pyhmmer-0.11.2-build
+ cd pyhmmer-0.11.2
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(packaging)'
+ echo 'python3dist(pip) >= 19'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/python-pyhmmer-0.11.2-build/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ VALAFLAGS=-g
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ CC=gcc
+ CXX=g++
+ TMPDIR=/builddir/build/BUILD/python-pyhmmer-0.11.2-build/.pyproject-builddir
+ RPM_TOXENV=py313
+ FEDORA=41
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyproject-wheeldir --output /builddir/build/BUILD/python-pyhmmer-0.11.2-build/python-pyhmmer-0.11.2-1.fc41.x86_64-pyproject-buildrequires -x test
Handling scikit-build-core from build-system.requires
Requirement satisfied: scikit-build-core
   (installed: scikit-build-core 0.11.0)
Handling cython >= 3.0 from build-system.requires
Requirement satisfied: cython >= 3.0
   (installed: cython 3.1.6)
2025-10-27 14:10:20,163 - scikit_build_core - WARNING - Unknown keys in top-level of pyproject.toml: tool.mypy-pyhmmer.tests.*
*** scikit-build-core 0.11.0 using CMake 3.30.8 (metadata_wheel)
Handling psutil<8.0,>=6.0 from hook generated metadata: Requires-Dist (pyhmmer)
Requirement satisfied: psutil<8.0,>=6.0
   (installed: psutil 6.0.0)
Handling importlib-resources; python_version < "3.9" and extra == "test" from hook generated metadata: Requires-Dist (pyhmmer)
Ignoring alien requirement: importlib-resources; python_version < "3.9" and extra == "test"
+ cat /builddir/build/BUILD/python-pyhmmer-0.11.2-build/python-pyhmmer-0.11.2-1.fc41.x86_64-pyproject-buildrequires
+ rm -rfv pyhmmer-0.11.2.dist-info/
removed 'pyhmmer-0.11.2.dist-info/licenses/COPYING'
removed directory 'pyhmmer-0.11.2.dist-info/licenses'
removed 'pyhmmer-0.11.2.dist-info/WHEEL'
removed 'pyhmmer-0.11.2.dist-info/METADATA'
removed directory 'pyhmmer-0.11.2.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.6JIpdx
+ umask 022
+ cd /builddir/build/BUILD/python-pyhmmer-0.11.2-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd pyhmmer-0.11.2
+ mkdir -p /builddir/build/BUILD/python-pyhmmer-0.11.2-build/.pyproject-builddir
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ VALAFLAGS=-g
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ CC=gcc
+ CXX=g++
+ TMPDIR=/builddir/build/BUILD/python-pyhmmer-0.11.2-build/.pyproject-builddir
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyproject-wheeldir
Processing /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2
  Preparing metadata (pyproject.toml): started
  Running command Preparing metadata (pyproject.toml)
  2025-10-27 14:10:20,502 - scikit_build_core - WARNING - Unknown keys in top-level of pyproject.toml: tool.mypy-pyhmmer.tests.*
  *** scikit-build-core 0.11.0 using CMake 3.30.8 (metadata_wheel)
  Preparing metadata (pyproject.toml): finished with status 'done'
Building wheels for collected packages: pyhmmer
  Building wheel for pyhmmer (pyproject.toml): started
  Running command Building wheel for pyhmmer (pyproject.toml)
  2025-10-27 14:10:20,620 - scikit_build_core - WARNING - Unknown keys in top-level of pyproject.toml: tool.mypy-pyhmmer.tests.*
  *** scikit-build-core 0.11.0 using CMake 3.30.8 (wheel)
  *** Configuring CMake...
  loading initial cache file build/Release/CMakeInit.txt
  -- The C compiler identification is GNU 14.3.1
  -- Detecting C compiler ABI info
  -- Detecting C compiler ABI info - done
  -- Check for working C compiler: /usr/bin/gcc - skipped
  -- Detecting C compile features
  -- Detecting C compile features - done
  -- Try NEON C flag = [ ]
  -- Performing Test HAVE_NEON
  -- Performing Test HAVE_NEON - Failed
  -- Try NEON C flag = [-mfpu=neon]
  -- Performing Test HAVE_NEON
  -- Performing Test HAVE_NEON - Failed
  -- Try NEON C flag = [-mfpu=neon -mfloat-abi=softfp]
  -- Performing Test HAVE_NEON
  -- Performing Test HAVE_NEON - Failed
  -- Could NOT find NEON (missing: NEON_C_FLAGS)
  -- Try SSE2 C flag = [ ]
  -- Performing Test HAVE_SSE2
  -- Performing Test HAVE_SSE2 - Success
  -- Found SSE2:
  -- Try SSE4 C flag = [ ]
  -- Performing Test HAVE_SSE4
  -- Performing Test HAVE_SSE4 - Failed
  -- Try SSE4 C flag = [-msse4.1]
  -- Performing Test HAVE_SSE4
  -- Performing Test HAVE_SSE4 - Success
  -- Found SSE4: -msse4.1
  -- Try VMX C flag = [ ]
  -- Performing Test HAVE_VMX
  -- Performing Test HAVE_VMX - Failed
  -- Could NOT find VMX (missing: VMX_C_FLAGS)
  -- Found Python: /usr/bin/python3 (found version "3.13.9") found components: Interpreter Development.Module
  -- Looking for PyInterpreterState_GetID
  -- Looking for PyInterpreterState_GetID - not found
  -- Looking for stdio.h
  -- Looking for stdio.h - found
  -- Looking for stdlib.h
  -- Looking for stdlib.h - found
  -- Looking for string.h
  -- Looking for string.h - found
  -- Looking for inttypes.h
  -- Looking for inttypes.h - found
  -- Looking for stdint.h
  -- Looking for stdint.h - found
  -- Looking for strings.h
  -- Looking for strings.h - found
  -- Looking for sys/stat.h
  -- Looking for sys/stat.h - found
  -- Looking for sys/types.h
  -- Looking for sys/types.h - found
  -- Looking for unistd.h
  -- Looking for unistd.h - found
  -- Looking for endian.h
  -- Looking for endian.h - found
  -- Looking for netinet/in.h
  -- Looking for netinet/in.h - found
  -- Looking for sys/param.h
  -- Looking for sys/param.h - found
  -- Looking for sys/sysctl.h
  -- Looking for sys/sysctl.h - not found
  -- Looking for aligned_alloc
  -- Looking for aligned_alloc - found
  -- Looking for erfc
  -- Looking for erfc - not found
  -- Looking for getpid
  -- Looking for getpid - found
  -- Looking for _mm_malloc
  -- Looking for _mm_malloc - not found
  -- Looking for popen
  -- Looking for popen - found
  -- Looking for posix_memalign
  -- Looking for posix_memalign - found
  -- Looking for strcasecmp
  -- Looking for strcasecmp - found
  -- Looking for strsep
  -- Looking for strsep - found
  -- Looking for sysconf
  -- Looking for sysconf - found
  -- Looking for sysctl
  -- Looking for sysctl - not found
  -- Looking for times
  -- Looking for times - found
  -- Looking for fseeko
  -- Looking for fseeko - found
  -- Configuring done (2.2s)
  -- Generating done (0.0s)
  -- Build files have been written to: /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release
  *** Building project with Ninja...
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  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/easel/esl_dsqdata.c: In function ‘dsqdata_unpacker_thread’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/easel/esl_dsqdata.c:1130:1: warning: control reaches end of non-void function [-Wreturn-type]
   1130 | }
        | ^
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/easel/esl_dsqdata.c: In function ‘dsqdata_loader_thread’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/easel/esl_dsqdata.c:1053:1: warning: control reaches end of non-void function [-Wreturn-type]
   1053 | }
        | ^
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  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/easel/esl_minimizer.c: In function ‘esl_min_ConjugateGradientDescent’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/easel/esl_minimizer.c:243:23: warning: ‘fx’ may be used uninitialized [-Wmaybe-uninitialized]
    243 |   if (opt_fx) *opt_fx = fx;
        |               ~~~~~~~~^~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/easel/esl_minimizer.c:119:10: note: ‘fx’ was declared here
    119 |   double fx;
        |          ^~
  In function ‘brent’,
      inlined from ‘esl_min_ConjugateGradientDescent’ at /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/easel/esl_minimizer.c:192:7:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/easel/esl_minimizer.c:720:21: warning: ‘ax’ may be used uninitialized [-Wmaybe-uninitialized]
    720 |       m   = 0.5 * (a+b);
        |                   ~~^~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/easel/esl_minimizer.c: In function ‘esl_min_ConjugateGradientDescent’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/easel/esl_minimizer.c:118:10: note: ‘ax’ was declared here
    118 |   double ax,bx,cx;
        |          ^~
  In function ‘brent’,
      inlined from ‘esl_min_ConjugateGradientDescent’ at /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/easel/esl_minimizer.c:192:7:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/easel/esl_minimizer.c:720:21: warning: ‘cx’ may be used uninitialized [-Wmaybe-uninitialized]
    720 |       m   = 0.5 * (a+b);
        |                   ~~^~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/easel/esl_minimizer.c: In function ‘esl_min_ConjugateGradientDescent’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/easel/esl_minimizer.c:118:16: note: ‘cx’ was declared here
    118 |   double ax,bx,cx;
        |                ^~
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  [40/173] Building C object src/easel/build/CMakeFiles/libeasel.dir/esl_msacluster.c.o
  [41/173] Building C object src/easel/build/CMakeFiles/libeasel.dir/esl_msafile_afa.c.o
  [42/173] Building C object src/easel/build/CMakeFiles/libeasel.dir/esl_msafile.c.o
  [43/173] Building C object src/easel/build/CMakeFiles/libeasel.dir/esl_msafile_clustal.c.o
  [44/173] Building C object src/easel/build/CMakeFiles/libeasel.dir/esl_msafile_a2m.c.o
  [45/173] Building C object src/easel/build/CMakeFiles/libeasel.dir/esl_msafile_psiblast.c.o
  [46/173] Building C object src/easel/build/CMakeFiles/libeasel.dir/esl_msafile2.c.o
  [47/173] Building C object src/easel/build/CMakeFiles/libeasel.dir/esl_msafile_phylip.c.o
  In function ‘phylip_interleaved_Read’,
      inlined from ‘esl_msafile_phylip_Read’ at /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/easel/esl_msafile_phylip.c:284:56:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/easel/esl_msafile_phylip.c:452:15: warning: ‘block_alen’ may be used uninitialized [-Wmaybe-uninitialized]
    452 |       else if (cur_alen - alen != block_alen) ESL_XFAIL(eslEFORMAT, afp->errmsg, "number of residues on line differs from previous seqs in alignment block");
        |               ^
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/easel/esl_msafile_phylip.c: In function ‘esl_msafile_phylip_Read’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/easel/esl_msafile_phylip.c:422:13: note: ‘block_alen’ was declared here
    422 |   int64_t   block_alen;         /* # of residues being added by current block */
        |             ^~~~~~~~~~
  In function ‘phylip_check_interleaved’,
      inlined from ‘esl_msafile_phylip_CheckFileFormat’ at /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/easel/esl_msafile_phylip.c:389:13:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/easel/esl_msafile_phylip.c:739:16: warning: ‘nres1’ may be used uninitialized [-Wmaybe-uninitialized]
    739 |       if (nres1+nres2 == alen) break;
        |           ~~~~~^~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/easel/esl_msafile_phylip.c: In function ‘esl_msafile_phylip_CheckFileFormat’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/easel/esl_msafile_phylip.c:687:13: note: ‘nres1’ was declared here
    687 |   int       nres1;
        |             ^~~~~
  In function ‘phylip_deduce_namewidth’,
      inlined from ‘phylip_check_interleaved’ at /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/easel/esl_msafile_phylip.c:747:22,
      inlined from ‘esl_msafile_phylip_CheckFileFormat’ at /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/easel/esl_msafile_phylip.c:389:13:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/easel/esl_msafile_phylip.c:1048:10: warning: ‘ncols0’ may be used uninitialized [-Wmaybe-uninitialized]
   1048 |   for (c = ncols0-1; nres1 && c >= 0; c--)
        |        ~~^~~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/easel/esl_msafile_phylip.c: In function ‘esl_msafile_phylip_CheckFileFormat’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/easel/esl_msafile_phylip.c:683:20: note: ‘ncols0’ was declared here
    683 |   int       ncols, ncols0;
        |                    ^~~~~~
  [48/173] Building C object src/easel/build/CMakeFiles/libeasel.dir/esl_neon.c.o
  [49/173] Building C object src/easel/build/CMakeFiles/libeasel.dir/esl_msashuffle.c.o
  [50/173] Building C object src/easel/build/CMakeFiles/libeasel.dir/esl_normal.c.o
  [51/173] Building C object src/easel/build/CMakeFiles/libeasel.dir/esl_paml.c.o
  [52/173] Building C object src/easel/build/CMakeFiles/libeasel.dir/esl_quicksort.c.o
  [53/173] Building C object src/easel/build/CMakeFiles/libeasel.dir/esl_msafile_selex.c.o
  [54/173] Building C object src/easel/build/CMakeFiles/libeasel.dir/esl_rand64.c.o
  [55/173] Building C object src/easel/build/CMakeFiles/libeasel.dir/esl_msaweight.c.o
  [56/173] Building C object src/easel/build/CMakeFiles/libeasel.dir/esl_random.c.o
  [57/173] Building C object src/easel/build/CMakeFiles/libeasel.dir/esl_red_black.c.o
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  [60/173] Building C object src/easel/build/CMakeFiles/libeasel.dir/esl_recorder.c.o
  [61/173] Building C object src/easel/build/CMakeFiles/libeasel.dir/esl_msafile_stockholm.c.o
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  [63/173] Building C object src/easel/build/CMakeFiles/libeasel.dir/esl_randomseq.c.o
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  [65/173] Building C object src/easel/build/CMakeFiles/libeasel.dir/esl_scorematrix.c.o
  [66/173] Building C object src/easel/build/CMakeFiles/libeasel.dir/esl_regexp.c.o
  [67/173] Building C object src/easel/build/CMakeFiles/libeasel.dir/esl_sq.c.o
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  [69/173] Building C object src/easel/build/CMakeFiles/libeasel.dir/esl_sqio_ascii.full.c.o
  [70/173] Building C object src/easel/build/CMakeFiles/libeasel.dir/esl_stopwatch.c.o
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/easel/esl_stopwatch.c:15:15: warning: ‘stopwatch_getRealTime’ declared ‘static’ but never defined [-Wunused-function]
     15 | static double stopwatch_getRealTime(void);
        |               ^~~~~~~~~~~~~~~~~~~~~
  [71/173] Building C object src/easel/build/CMakeFiles/libeasel.dir/esl_stack.c.o
  [72/173] Building C object src/easel/build/CMakeFiles/libeasel.dir/esl_subcmd.c.o
  [73/173] Building C object src/easel/build/CMakeFiles/libeasel.dir/esl_threads.c.o
  [74/173] Building C object src/easel/build/CMakeFiles/libeasel.dir/esl_stretchexp.c.o
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  [76/173] Building C object src/easel/build/CMakeFiles/libeasel.dir/esl_swat.c.o
  [77/173] Building C object src/easel/build/CMakeFiles/libeasel.dir/esl_ssi.c.o
  [78/173] Building C object src/easel/build/CMakeFiles/libeasel.dir/esl_vmx.c.o
  [79/173] Building C object src/easel/build/CMakeFiles/libeasel.dir/esl_workqueue.c.o
  [80/173] Building C object src/easel/build/CMakeFiles/libeasel.dir/esl_varint.c.o
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/easel/esl_varint.c: In function ‘esl_varint_google_decode’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/easel/esl_varint.c:471:11: warning: ‘grp’ may be used uninitialized [-Wmaybe-uninitialized]
    471 |   if (grp & cmask) { status = eslEOD; goto ERROR; }
        |       ~~~~^~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/easel/esl_varint.c:461:12: note: ‘grp’ was declared here
    461 |   uint64_t grp;                     // current k-bit code group
        |            ^~~
  [81/173] Building C object src/easel/build/CMakeFiles/libeasel.dir/interface_gsl.c.o
  [82/173] Building C object src/easel/build/CMakeFiles/libeasel.dir/interface_lapack.c.o
  [83/173] Building C object src/easel/build/CMakeFiles/libeasel.dir/esl_weibull.c.o
  [84/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/cachedb.c.o
  [85/173] Building C object src/easel/build/CMakeFiles/libeasel.dir/esl_wuss.c.o
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/easel/esl_wuss.c: In function ‘esl_wuss2ct’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/easel/esl_wuss.c:136:10: warning: ‘status’ may be used uninitialized [-Wmaybe-uninitialized]
    136 |   return status;
        |          ^~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/easel/esl_wuss.c:56:14: note: ‘status’ was declared here
     56 |   int        status;      /* success or failure return status */
        |              ^~~~~~
  [86/173] Building C object src/easel/build/CMakeFiles/libeasel.dir/esl_sqio_ncbi.c.o
  [87/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/errors.c.o
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  [93/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/cachedb_shard.c.o
  [94/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/generic_fwdback.c.o
  [95/173] Building C object src/easel/build/CMakeFiles/libeasel.dir/esl_tree.c.o
  [96/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/generic_fwdback_banded.c.o
  [97/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/generic_null2.c.o
  [98/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/generic_msv.c.o
  [99/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/generic_stotrace.c.o
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/generic_stotrace.c: In function ‘p7_GStochasticTrace’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/generic_stotrace.c:172:21: warning: ‘scur’ may be used uninitialized [-Wmaybe-uninitialized]
    172 |       if ((status = p7_trace_Append(tr, scur, k, i)) != eslOK) goto ERROR;
        |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/generic_stotrace.c:57:11: note: ‘scur’ was declared here
     57 |   int     scur, sprv;
        |           ^~~~
  [100/173] Building C object src/easel/build/CMakeFiles/libeasel.dir/esl_vectorops.c.o
  [101/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/generic_fwdback_chk.c.o
  [102/173] Linking C static library src/easel/build/liblibeasel.a
  [103/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/heatmap.c.o
  [104/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/h2_io.c.o
  [105/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/generic_optacc.c.o
  [106/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/hmmdmstr.c.o
  [107/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/hmmdmstr_shard.c.o
  [108/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/generic_vtrace.c.o
  [109/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/hmmdwrkr.c.o
  [110/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/generic_viterbi.c.o
  [111/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/hmmdwrkr_shard.c.o
  [112/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/hmmdutils.c.o
  [113/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/hmmer.c.o
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  [115/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/hmmd_search_status.c.o
  [116/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/logsum.c.o
  [117/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/hmmlogo.c.o
  [118/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/seqmodel.c.o
  [119/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/modelstats.c.o
  [120/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/p7_bg.c.o
  [121/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/modelconfig.c.o
  [122/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/p7_gbands.c.o
  [123/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/p7_domain.c.o
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_domain.c: In function ‘p7_domain_Serialize’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_domain.c:228:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    228 |   network_32bit = esl_hton32(*((uint32_t *) &(obj->envsc)));  // ow, this hurts, but is probably the best way to get the
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_domain.c:235:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    235 |   network_32bit = esl_hton32(*((uint32_t *) &(obj->domcorrection)));
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_domain.c:240:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    240 |   network_32bit = esl_hton32(*((uint32_t *) &(obj->dombias)));
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_domain.c:245:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    245 |   network_32bit = esl_hton32(*((uint32_t *) &(obj->oasc)));
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_domain.c:250:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    250 |   network_32bit = esl_hton32(*((uint32_t *) &(obj->bitscore)));
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_domain.c:255:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    255 |   network_64bit = esl_hton64(*((uint64_t *) &(obj->lnP)));
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_domain.c: In function ‘p7_domain_Deserialize’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_domain.c:379:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    379 |   ret_obj->envsc = *((float *) &host_32bit);
        |                     ~^~~~~~~~~~~~~~~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_domain.c:385:30: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    385 |   ret_obj->domcorrection = *((float *) &host_32bit);
        |                             ~^~~~~~~~~~~~~~~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_domain.c:391:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    391 |   ret_obj->dombias = *((float *) &host_32bit);
        |                       ~^~~~~~~~~~~~~~~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_domain.c:397:21: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    397 |   ret_obj->oasc = *((float *) &host_32bit);
        |                    ~^~~~~~~~~~~~~~~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_domain.c:403:25: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    403 |   ret_obj->bitscore = *((float *) &host_32bit);
        |                        ~^~~~~~~~~~~~~~~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_domain.c:409:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    409 |   ret_obj->lnP = *((double *) &host_64bit);
        |                   ~^~~~~~~~~~~~~~~~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_domain.c:436:38: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    436 |       ret_obj->scores_per_pos[i] = *((float *) &host_32bit);
        |                                     ~^~~~~~~~~~~~~~~~~~~~~~
  [124/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/p7_domaindef.c.o
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_domaindef.c: In function ‘rescore_isolated_domain’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_domaindef.c:932:5: warning: ‘orig_L’ may be used uninitialized [-Wmaybe-uninitialized]
    932 |     p7_oprofile_ReconfigRestLength(om, orig_L);
        |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_domaindef.c:827:18: note: ‘orig_L’ was declared here
    827 |   int            orig_L;
        |                  ^~~~~~
  [125/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/p7_builder.c.o
  [126/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/p7_gmxb.c.o
  [127/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/p7_gmx.c.o
  [128/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/p7_hmmcache.c.o
  [129/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/p7_gmxchk.c.o
  [130/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/p7_hit.c.o
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_hit.c: In function ‘p7_hit_Serialize’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_hit.c:287:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    287 |   network_64bit = esl_hton64(*((uint64_t *) &(obj->sortkey)));
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_hit.c:292:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    292 |   network_32bit = esl_hton32(*((uint32_t *) &(obj->score)));
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_hit.c:297:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    297 |   network_32bit = esl_hton32(*((uint32_t *) &(obj->pre_score)));
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_hit.c:302:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    302 |   network_32bit = esl_hton32(*((uint32_t *) &(obj->sum_score)));
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_hit.c:307:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    307 |   network_64bit = esl_hton64(*((uint64_t *) &(obj->lnP)));
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_hit.c:312:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    312 |   network_64bit = esl_hton64(*((uint64_t *) &(obj->pre_lnP)));
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_hit.c:317:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    317 |   network_64bit = esl_hton64(*((uint64_t *) &(obj->sum_lnP)));
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_hit.c:322:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    322 |   network_32bit = esl_hton32(*((uint32_t *) &(obj->nexpected)));
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_hit.c: In function ‘p7_hit_Deserialize’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_hit.c:471:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    471 |   ret_obj->sortkey = *((double *) &host_64bit);
        |                       ~^~~~~~~~~~~~~~~~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_hit.c:477:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    477 |   ret_obj->score = *((float *) &host_32bit);
        |                     ~^~~~~~~~~~~~~~~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_hit.c:483:26: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    483 |   ret_obj->pre_score = *((float *) &host_32bit);
        |                         ~^~~~~~~~~~~~~~~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_hit.c:489:26: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    489 |   ret_obj->sum_score = *((float *) &host_32bit);
        |                         ~^~~~~~~~~~~~~~~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_hit.c:495:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    495 |   ret_obj->lnP = *((double *) &host_64bit);
        |                   ~^~~~~~~~~~~~~~~~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_hit.c:501:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    501 |   ret_obj->pre_lnP = *((double *) &host_64bit);
        |                       ~^~~~~~~~~~~~~~~~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_hit.c:507:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    507 |   ret_obj->sum_lnP = *((double *) &host_64bit);
        |                       ~^~~~~~~~~~~~~~~~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_hit.c:513:26: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    513 |   ret_obj->nexpected = *((float *) &host_32bit);
        |                         ~^~~~~~~~~~~~~~~~~~~~~~
  [131/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/tracealign.c.o
  [132/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/p7_hmmwindow.c.o
  [133/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/p7_hmmd_search_stats.c.o
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_hmmd_search_stats.c: In function ‘p7_hmmd_search_stats_Serialize’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_hmmd_search_stats.c:89:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
     89 |   network_64bit = esl_hton64(*((uint64_t *) &(obj->elapsed)));  // ow, this hurts, but is probably the best way to get the
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_hmmd_search_stats.c:97:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
     97 |   network_64bit = esl_hton64(*((uint64_t *) &(obj->user)));
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_hmmd_search_stats.c:103:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    103 |   network_64bit = esl_hton64(*((uint64_t *) &(obj->sys)));
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_hmmd_search_stats.c:109:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    109 |   network_64bit = esl_hton64(*((uint64_t *) &(obj->Z)));
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_hmmd_search_stats.c:115:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    115 |   network_64bit = esl_hton64(*((uint64_t *) &(obj->domZ)));
        |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_hmmd_search_stats.c: In function ‘p7_hmmd_search_stats_Deserialize’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_hmmd_search_stats.c:258:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    258 |   ret_obj->elapsed = *((double *) &host_64bit);
        |                       ~^~~~~~~~~~~~~~~~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_hmmd_search_stats.c:264:21: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    264 |   ret_obj->user = *((double *) &host_64bit);
        |                    ~^~~~~~~~~~~~~~~~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_hmmd_search_stats.c:270:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    270 |   ret_obj->sys = *((double *) &host_64bit);
        |                   ~^~~~~~~~~~~~~~~~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_hmmd_search_stats.c:276:18: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    276 |   ret_obj->Z = *((double *) &host_64bit);
        |                 ~^~~~~~~~~~~~~~~~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_hmmd_search_stats.c:282:21: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    282 |   ret_obj->domZ = *((double *) &host_64bit);
        |                    ~^~~~~~~~~~~~~~~~~~~~~~~
  [134/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/p7_alidisplay.c.o
  [135/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/p7_prior.c.o
  [136/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/p7_profile.c.o
  [137/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/p7_hmm.c.o
  [138/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/p7_spensemble.c.o
  In file included from /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_spensemble.c:7:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_spensemble.c: In function ‘p7_spensemble_Cluster’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_spensemble.c:344:43: warning: ‘imax’ may be used uninitialized [-Wmaybe-uninitialized]
    344 |       cwindow_width = ESL_MAX(ESL_MAX(imax-imin+1, jmax-jmin+1),
        |                                       ~~~~^~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_spensemble.c:294:7: note: ‘imax’ was declared here
    294 |   int imax, jmax, kmax, mmax;
        |       ^~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_spensemble.c:344:56: warning: ‘jmin’ may be used uninitialized [-Wmaybe-uninitialized]
    344 |       cwindow_width = ESL_MAX(ESL_MAX(imax-imin+1, jmax-jmin+1),
        |                                                    ~~~~^~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_spensemble.c:293:13: note: ‘jmin’ was declared here
    293 |   int imin, jmin, kmin, mmin;
        |             ^~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_spensemble.c:345:43: warning: ‘kmin’ may be used uninitialized [-Wmaybe-uninitialized]
    345 |                               ESL_MAX(kmax-kmin+1, mmax-mmin+1));
        |                                       ~~~~^~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_spensemble.c:293:19: note: ‘kmin’ was declared here
    293 |   int imin, jmin, kmin, mmin;
        |                   ^~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_spensemble.c:345:56: warning: ‘mmin’ may be used uninitialized [-Wmaybe-uninitialized]
    345 |                               ESL_MAX(kmax-kmin+1, mmax-mmin+1));
        |                                                    ~~~~^~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_spensemble.c:293:25: note: ‘mmin’ was declared here
    293 |   int imin, jmin, kmin, mmin;
        |                         ^~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_spensemble.c:344:56: warning: ‘jmax’ may be used uninitialized [-Wmaybe-uninitialized]
    344 |       cwindow_width = ESL_MAX(ESL_MAX(imax-imin+1, jmax-jmin+1),
        |                                                    ~~~~^~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_spensemble.c:294:13: note: ‘jmax’ was declared here
    294 |   int imax, jmax, kmax, mmax;
        |             ^~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_spensemble.c:345:43: warning: ‘kmax’ may be used uninitialized [-Wmaybe-uninitialized]
    345 |                               ESL_MAX(kmax-kmin+1, mmax-mmin+1));
        |                                       ~~~~^~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_spensemble.c:294:19: note: ‘kmax’ was declared here
    294 |   int imax, jmax, kmax, mmax;
        |                   ^~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_spensemble.c:345:56: warning: ‘mmax’ may be used uninitialized [-Wmaybe-uninitialized]
    345 |                               ESL_MAX(kmax-kmin+1, mmax-mmin+1));
        |                                                    ~~~~^~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_spensemble.c:294:25: note: ‘mmax’ was declared here
    294 |   int imax, jmax, kmax, mmax;
        |                         ^~~~
  [139/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/p7_scoredata.c.o
  [140/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/fm_alphabet.c.o
  [141/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/p7_pipeline.c.o
  [142/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/hmmpgmd2msa.c.o
  [143/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/p7_trace.c.o
  [144/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/fm_general.c.o
  [145/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/p7_tophits.c.o
  In file included from /usr/include/stdio.h:970,
                   from /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/easel/easel.h:22,
                   from /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_tophits.c:16:
  In function ‘fprintf’,
      inlined from ‘p7_tophits_Targets’ at /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_tophits.c:1200:12:
  /usr/include/bits/stdio2.h:111:10: warning: ‘posw’ may be used uninitialized [-Wmaybe-uninitialized]
    111 |   return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
        |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    112 |                         __va_arg_pack ());
        |                         ~~~~~~~~~~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_tophits.c: In function ‘p7_tophits_Targets’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/p7_tophits.c:1126:10: note: ‘posw’ was declared here
   1126 |   int    posw;
        |          ^~~~
  [146/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/fm_sse.c.o
  [147/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/impl_sse/decoding.c.o
  [148/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/impl_sse/mpi.c.o
  [149/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/p7_hmmfile.full.c.o
  [150/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/impl_sse/io.c.o
  [151/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/fm_ssv.c.o
  In function ‘FM_extendSeed’,
      inlined from ‘p7_SSVFM_longlarget’ at /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/fm_ssv.c:808:5:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/fm_ssv.c:695:32: warning: ‘max_hit_start’ may be used uninitialized [-Wmaybe-uninitialized]
    695 |   diag->k       = model_start  + max_hit_start - 1;
        |                   ~~~~~~~~~~~~~^~~~~~~~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/fm_ssv.c: In function ‘p7_SSVFM_longlarget’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/fm_ssv.c:647:22: note: ‘max_hit_start’ was declared here
    647 |   int64_t hit_start, max_hit_start, max_hit_end;
        |                      ^~~~~~~~~~~~~
  In function ‘FM_extendSeed’,
      inlined from ‘p7_SSVFM_longlarget’ at /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/fm_ssv.c:808:5:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/fm_ssv.c:696:31: warning: ‘max_hit_end’ may be used uninitialized [-Wmaybe-uninitialized]
    696 |   diag->length  = max_hit_end - max_hit_start + 1;
        |                   ~~~~~~~~~~~~^~~~~~~~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/fm_ssv.c: In function ‘p7_SSVFM_longlarget’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/fm_ssv.c:647:37: note: ‘max_hit_end’ was declared here
    647 |   int64_t hit_start, max_hit_start, max_hit_end;
        |                                     ^~~~~~~~~~~
  [152/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/impl_sse/fwdback.c.o
  [153/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/impl_sse/null2.c.o
  [154/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/impl_sse/msvfilter.c.o
  [155/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/impl_sse/optacc.c.o
  In function ‘get_postprob’,
      inlined from ‘p7_OATrace’ at /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/impl_sse/optacc.c:254:18:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/impl_sse/optacc.c:273:3: warning: ‘smax’ may be used uninitialized [-Wmaybe-uninitialized]
    273 |   switch (scur) {
        |   ^~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/impl_sse/optacc.c: In function ‘p7_OATrace’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/impl_sse/optacc.c:396:10: note: ‘smax’ was declared here
    396 |   int    smax, kmax;
        |          ^~~~
  In function ‘get_postprob’,
      inlined from ‘p7_OATrace’ at /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/impl_sse/optacc.c:254:18:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/impl_sse/optacc.c:269:21: warning: ‘kmax’ may be used uninitialized [-Wmaybe-uninitialized]
    269 |   int     q     = (k-1) % Q;            /* (q,r) is position of the current DP cell M(i,k) */
        |                   ~~^~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/impl_sse/optacc.c: In function ‘p7_OATrace’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/hmmer/src/impl_sse/optacc.c:396:16: note: ‘kmax’ was declared here
    396 |   int    smax, kmax;
        |                ^~~~
  [156/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/impl_sse/p7_omx.c.o
  [157/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/impl_sse/vitfilter.c.o
  [158/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/impl_sse/stotrace.c.o
  [159/173] Cythonizing errors.pyx to errors.c
  [160/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/impl_sse/p7_oprofile.c.o
  [161/173] Cythonizing easel.pyx to easel.c
  performance hint: /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/src/pyhmmer/exceptions.pxi:45:0: Exception check on '_py_handler' will always require the GIL to be acquired.
  Possible solutions:
        1. Declare '_py_handler' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
        2. Use an 'int' return type on '_py_handler' to allow an error code to be returned.
  [162/173] Building C object src/hmmer/build/src/CMakeFiles/libhmmer.dir/impl_sse/ssvfilter.c.o
  [163/173] Linking C static library src/hmmer/build/src/liblibhmmer.a
  [164/173] Building C object src/pyhmmer/CMakeFiles/pyhmmer.errors.dir/errors.c.o
  [165/173] Cythonizing daemon.pyx to daemon.c
  [166/173] Linking C shared module src/pyhmmer/errors.cpython-313-x86_64-linux-gnu.so
  [167/173] Cythonizing plan7.pyx to plan7.c
  performance hint: /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/src/pyhmmer/exceptions.pxi:45:0: Exception check on '_py_handler' will always require the GIL to be acquired.
  Possible solutions:
        1. Declare '_py_handler' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
        2. Use an 'int' return type on '_py_handler' to allow an error code to be returned.
  warning: /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/src/pyhmmer/plan7.pyx:5608:12: Unreachable code
  warning: /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/src/pyhmmer/plan7.pyx:5581:8: Unreachable code
  warning: /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/src/pyhmmer/plan7.pyx:6733:8: Unreachable code
  warning: /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/src/pyhmmer/plan7.pyx:6719:8: Unreachable code
  [168/173] Building C object src/pyhmmer/CMakeFiles/pyhmmer.daemon.dir/daemon.c.o
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/daemon.c:3788:153: warning: ‘struct __pyx_fuse_0__pyx_opt_args_7pyhmmer_5plan7_19LongTargetsPipeline__get_om_from_query’ declared inside parameter list will not be visible outside of this definition or declaration
   3788 |   P7_OPROFILE *(*__pyx_fuse_0_get_om_from_query)(struct __pyx_obj_7pyhmmer_5plan7_LongTargetsPipeline *, struct __pyx_obj_7pyhmmer_5plan7_HMM *, struct __pyx_fuse_0__pyx_opt_args_7pyhmmer_5plan7_19LongTargetsPipeline__get_om_from_query *__pyx_optional_args);
        |                                                                                                                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/daemon.c:3789:157: warning: ‘struct __pyx_fuse_1__pyx_opt_args_7pyhmmer_5plan7_19LongTargetsPipeline__get_om_from_query’ declared inside parameter list will not be visible outside of this definition or declaration
   3789 |   P7_OPROFILE *(*__pyx_fuse_1_get_om_from_query)(struct __pyx_obj_7pyhmmer_5plan7_LongTargetsPipeline *, struct __pyx_obj_7pyhmmer_5plan7_Profile *, struct __pyx_fuse_1__pyx_opt_args_7pyhmmer_5plan7_19LongTargetsPipeline__get_om_from_query *__pyx_optional_args);
        |                                                                                                                                                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/daemon.c:3790:166: warning: ‘struct __pyx_fuse_2__pyx_opt_args_7pyhmmer_5plan7_19LongTargetsPipeline__get_om_from_query’ declared inside parameter list will not be visible outside of this definition or declaration
   3790 |   P7_OPROFILE *(*__pyx_fuse_2_get_om_from_query)(struct __pyx_obj_7pyhmmer_5plan7_LongTargetsPipeline *, struct __pyx_obj_7pyhmmer_5plan7_OptimizedProfile *, struct __pyx_fuse_2__pyx_opt_args_7pyhmmer_5plan7_19LongTargetsPipeline__get_om_from_query *__pyx_optional_args);
        |                                                                                                                                                                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/daemon.c:3797:255: warning: ‘struct __pyx_fuse_0__pyx_opt_args_7pyhmmer_5plan7_19LongTargetsPipeline_search_msa’ declared inside parameter list will not be visible outside of this definition or declaration
   3797 |   struct __pyx_obj_7pyhmmer_5plan7_TopHits *(*__pyx_fuse_0search_msa)(struct __pyx_obj_7pyhmmer_5plan7_LongTargetsPipeline *, struct __pyx_obj_7pyhmmer_5easel_DigitalMSA *, struct __pyx_obj_7pyhmmer_5easel_SequenceFile *, int __pyx_skip_dispatch, struct __pyx_fuse_0__pyx_opt_args_7pyhmmer_5plan7_19LongTargetsPipeline_search_msa *__pyx_optional_args);
        |                                                                                                                                                                                                                                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/daemon.c:3798:263: warning: ‘struct __pyx_fuse_1__pyx_opt_args_7pyhmmer_5plan7_19LongTargetsPipeline_search_msa’ declared inside parameter list will not be visible outside of this definition or declaration
   3798 |   struct __pyx_obj_7pyhmmer_5plan7_TopHits *(*__pyx_fuse_1search_msa)(struct __pyx_obj_7pyhmmer_5plan7_LongTargetsPipeline *, struct __pyx_obj_7pyhmmer_5easel_DigitalMSA *, struct __pyx_obj_7pyhmmer_5easel_DigitalSequenceBlock *, int __pyx_skip_dispatch, struct __pyx_fuse_1__pyx_opt_args_7pyhmmer_5plan7_19LongTargetsPipeline_search_msa *__pyx_optional_args);
        |                                                                                                                                                                                                                                                                       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/daemon.c:3799:260: warning: ‘struct __pyx_fuse_0__pyx_opt_args_7pyhmmer_5plan7_19LongTargetsPipeline_search_seq’ declared inside parameter list will not be visible outside of this definition or declaration
   3799 |   struct __pyx_obj_7pyhmmer_5plan7_TopHits *(*__pyx_fuse_0search_seq)(struct __pyx_obj_7pyhmmer_5plan7_LongTargetsPipeline *, struct __pyx_obj_7pyhmmer_5easel_DigitalSequence *, struct __pyx_obj_7pyhmmer_5easel_SequenceFile *, int __pyx_skip_dispatch, struct __pyx_fuse_0__pyx_opt_args_7pyhmmer_5plan7_19LongTargetsPipeline_search_seq *__pyx_optional_args);
        |                                                                                                                                                                                                                                                                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/daemon.c:3800:268: warning: ‘struct __pyx_fuse_1__pyx_opt_args_7pyhmmer_5plan7_19LongTargetsPipeline_search_seq’ declared inside parameter list will not be visible outside of this definition or declaration
   3800 |   struct __pyx_obj_7pyhmmer_5plan7_TopHits *(*__pyx_fuse_1search_seq)(struct __pyx_obj_7pyhmmer_5plan7_LongTargetsPipeline *, struct __pyx_obj_7pyhmmer_5easel_DigitalSequence *, struct __pyx_obj_7pyhmmer_5easel_DigitalSequenceBlock *, int __pyx_skip_dispatch, struct __pyx_fuse_1__pyx_opt_args_7pyhmmer_5plan7_19LongTargetsPipeline_search_seq *__pyx_optional_args);
        |                                                                                                                                                                                                                                                                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/daemon.c: In function ‘__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview___cinit__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/daemon.c:9087:10: warning: unused variable ‘__pyx_t_5’ [-Wunused-variable]
   9087 |   size_t __pyx_t_5;
        |          ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/daemon.c:9086:15: warning: unused variable ‘__pyx_t_4’ [-Wunused-variable]
   9086 |   Py_intptr_t __pyx_t_4;
        |               ^~~~~~~~~
  [169/173] Linking C shared module src/pyhmmer/daemon.cpython-313-x86_64-linux-gnu.so
  [170/173] Building C object src/pyhmmer/CMakeFiles/pyhmmer.easel.dir/easel.c.o
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview___cinit__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:10801:10: warning: unused variable ‘__pyx_t_5’ [-Wunused-variable]
  10801 |   size_t __pyx_t_5;
        |          ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:10800:15: warning: unused variable ‘__pyx_t_4’ [-Wunused-variable]
  10800 |   Py_intptr_t __pyx_t_4;
        |               ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_pf_7pyhmmer_5easel_8Alphabet_12__repr__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:22922:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  22922 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_pf_7pyhmmer_5easel_8Alphabet_16__reduce__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:23323:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  23323 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_pf_7pyhmmer_5easel_8Alphabet_18__sizeof__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:23557:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  23557 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_pf_7pyhmmer_5easel_8Alphabet_1K___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:23642:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  23642 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_pf_7pyhmmer_5easel_8Alphabet_2Kp___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:23727:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  23727 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_pf_7pyhmmer_5easel_8Alphabet_7symbols___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:23812:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  23812 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_pf_7pyhmmer_5easel_8Alphabet_4type___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:23897:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  23897 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_pf_7pyhmmer_5easel_8Alphabet_10gap_symbol___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:23987:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  23987 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_pf_7pyhmmer_5easel_8Alphabet_9gap_index___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:24072:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  24072 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_pf_7pyhmmer_5easel_11GeneticCode_17translation_table___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:26665:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  26665 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_pf_7pyhmmer_5easel_11GeneticCode_11description___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:26970:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  26970 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_pf_7pyhmmer_5easel_8Bitfield_12__len__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:29194:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  29194 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_pf_7pyhmmer_5easel_8Bitfield_14__getitem__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:29284:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  29284 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_pf_7pyhmmer_5easel_8Bitfield_24__getstate__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:30176:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  30176 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_pf_7pyhmmer_5easel_8Bitfield_28__sizeof__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:30686:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  30686 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_f_7pyhmmer_5easel_8Bitfield_count’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:31362:7: warning: unused variable ‘__pyx_t_7’ [-Wunused-variable]
  31362 |   int __pyx_t_7;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_f_7pyhmmer_5easel_8Bitfield_copy’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:31679:7: warning: unused variable ‘__pyx_t_6’ [-Wunused-variable]
  31679 |   int __pyx_t_6;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_f_7pyhmmer_5easel_8Bitfield_toggle’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:31958:7: warning: unused variable ‘__pyx_t_7’ [-Wunused-variable]
  31958 |   int __pyx_t_7;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_pf_7pyhmmer_5easel_7KeyHash_8__len__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:32772:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  32772 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_pf_7pyhmmer_5easel_7KeyHash_12__getitem__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:33125:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  33125 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_gb_7pyhmmer_5easel_7KeyHash_16generator’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:33418:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  33418 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_pf_7pyhmmer_5easel_7KeyHash_17__getstate__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:33608:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  33608 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_pf_7pyhmmer_5easel_7KeyHash_21__sizeof__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:34641:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  34641 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_f_7pyhmmer_5easel_7KeyHash_add’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:34736:7: warning: unused variable ‘__pyx_t_7’ [-Wunused-variable]
  34736 |   int __pyx_t_7;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_pf_7pyhmmer_5easel_6Vector_26__add__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:37894:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  37894 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_pf_7pyhmmer_5easel_6Vector_28__sub__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:38013:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  38013 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_pf_7pyhmmer_5easel_6Vector_30__mul__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:38132:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  38132 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_pf_7pyhmmer_5easel_7VectorF_8__neg__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:40835:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  40835 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_pf_7pyhmmer_5easel_7VectorF_10__iadd__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:41003:7: warning: unused variable ‘__pyx_t_3’ [-Wunused-variable]
  41003 |   int __pyx_t_3;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_pf_7pyhmmer_5easel_7VectorF_12__isub__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:41314:7: warning: unused variable ‘__pyx_t_3’ [-Wunused-variable]
  41314 |   int __pyx_t_3;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_pf_7pyhmmer_5easel_7VectorF_14__imul__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:41657:7: warning: unused variable ‘__pyx_t_3’ [-Wunused-variable]
  41657 |   int __pyx_t_3;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_pf_7pyhmmer_5easel_7VectorF_16__truediv__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:41980:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  41980 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_pf_7pyhmmer_5easel_7VectorF_18__itruediv__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:42096:7: warning: unused variable ‘__pyx_t_3’ [-Wunused-variable]
  42096 |   int __pyx_t_3;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_f_7pyhmmer_5easel_7VectorF_entropy’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:43775:7: warning: unused variable ‘__pyx_t_7’ [-Wunused-variable]
  43775 |   int __pyx_t_7;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_f_7pyhmmer_5easel_7VectorF_normalize’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:44582:7: warning: unused variable ‘__pyx_t_6’ [-Wunused-variable]
  44582 |   int __pyx_t_6;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_f_7pyhmmer_5easel_7VectorF_reverse’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:45189:7: warning: unused variable ‘__pyx_t_6’ [-Wunused-variable]
  45189 |   int __pyx_t_6;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_f_7pyhmmer_5easel_7VectorF_sum’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:45440:7: warning: unused variable ‘__pyx_t_7’ [-Wunused-variable]
  45440 |   int __pyx_t_7;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_pf_7pyhmmer_5easel_8VectorU8_8__iadd__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:47292:7: warning: unused variable ‘__pyx_t_3’ [-Wunused-variable]
  47292 |   int __pyx_t_3;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_pf_7pyhmmer_5easel_8VectorU8_10__isub__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:47635:7: warning: unused variable ‘__pyx_t_3’ [-Wunused-variable]
  47635 |   int __pyx_t_3;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_pf_7pyhmmer_5easel_8VectorU8_12__imul__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:47978:7: warning: unused variable ‘__pyx_t_3’ [-Wunused-variable]
  47978 |   int __pyx_t_3;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_pf_7pyhmmer_5easel_8VectorU8_14__floordiv__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:48315:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  48315 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_pf_7pyhmmer_5easel_8VectorU8_16__ifloordiv__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:48431:7: warning: unused variable ‘__pyx_t_3’ [-Wunused-variable]
  48431 |   int __pyx_t_3;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_f_7pyhmmer_5easel_8VectorU8_reverse’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:50974:7: warning: unused variable ‘__pyx_t_6’ [-Wunused-variable]
  50974 |   int __pyx_t_6;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_f_7pyhmmer_5easel_8VectorU8_sum’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:51271:7: warning: unused variable ‘__pyx_t_7’ [-Wunused-variable]
  51271 |   int __pyx_t_7;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_pf_7pyhmmer_5easel_6Matrix_26__add__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:53725:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  53725 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_pf_7pyhmmer_5easel_6Matrix_28__mul__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:53844:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  53844 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_f_7pyhmmer_5easel_7MatrixF_argmax’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:57878:7: warning: unused variable ‘__pyx_t_6’ [-Wunused-variable]
  57878 |   int __pyx_t_6;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_f_7pyhmmer_5easel_7MatrixF_argmin’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:58163:7: warning: unused variable ‘__pyx_t_6’ [-Wunused-variable]
  58163 |   int __pyx_t_6;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_f_7pyhmmer_5easel_7MatrixF_max’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:58777:7: warning: unused variable ‘__pyx_t_7’ [-Wunused-variable]
  58777 |   int __pyx_t_7;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_f_7pyhmmer_5easel_7MatrixF_min’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:59018:7: warning: unused variable ‘__pyx_t_7’ [-Wunused-variable]
  59018 |   int __pyx_t_7;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_f_7pyhmmer_5easel_7MatrixF_sum’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:59259:7: warning: unused variable ‘__pyx_t_7’ [-Wunused-variable]
  59259 |   int __pyx_t_7;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_f_7pyhmmer_5easel_8MatrixU8_sum’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:64192:7: warning: unused variable ‘__pyx_t_7’ [-Wunused-variable]
  64192 |   int __pyx_t_7;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_pf_7pyhmmer_5easel_13_MSASequences_2__len__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:64698:7: warning: unused variable ‘__pyx_t_2’ [-Wunused-variable]
  64698 |   int __pyx_t_2;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_pf_7pyhmmer_5easel_13_MSAAlignment_2__len__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:65009:7: warning: unused variable ‘__pyx_t_2’ [-Wunused-variable]
  65009 |   int __pyx_t_2;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_pf_7pyhmmer_5easel_9_MSAIndex_4__len__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:65785:7: warning: unused variable ‘__pyx_t_2’ [-Wunused-variable]
  65785 |   int __pyx_t_2;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_gb_7pyhmmer_5easel_9_MSAIndex_8generator1’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:66011:7: warning: unused variable ‘__pyx_t_2’ [-Wunused-variable]
  66011 |   int __pyx_t_2;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_pf_7pyhmmer_5easel_7TextMSA_9alignment___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:75226:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  75226 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_pf_7pyhmmer_5easel_7TextMSA_9sequences___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:75356:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  75356 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_pf_7pyhmmer_5easel_10DigitalMSA_9alignment___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:81118:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  81118 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_pf_7pyhmmer_5easel_10Randomness_10__repr__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:88648:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  88648 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_pf_7pyhmmer_5easel_10Randomness_16__sizeof__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:89076:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  89076 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_pf_7pyhmmer_5easel_10Randomness_4fast___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:89161:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  89161 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_f_7pyhmmer_5easel_10Randomness_random’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:90383:7: warning: unused variable ‘__pyx_t_7’ [-Wunused-variable]
  90383 |   int __pyx_t_7;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_f_7pyhmmer_5easel_10Randomness_normalvariate’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:90596:7: warning: unused variable ‘__pyx_t_9’ [-Wunused-variable]
  90596 |   int __pyx_t_9;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_pf_7pyhmmer_5easel_8Sequence_12__sizeof__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:91520:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  91520 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_pf_7pyhmmer_5easel_8Sequence_9accession___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:91656:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  91656 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_pf_7pyhmmer_5easel_8Sequence_4name___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:92012:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  92012 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_pf_7pyhmmer_5easel_8Sequence_11description___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:92360:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  92360 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_pf_7pyhmmer_5easel_8Sequence_6source___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:92716:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  92716 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_pf_7pyhmmer_5easel_12TextSequence_8sequence___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:97583:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  97583 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_pf_7pyhmmer_5easel_15DigitalSequence_8sequence___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:102005:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  102005 |   int __pyx_t_1;
         |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_pf_7pyhmmer_5easel_19_SequenceBlockIndex_4__getitem__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:104740:7: warning: unused variable ‘__pyx_t_3’ [-Wunused-variable]
  104740 |   int __pyx_t_3;
         |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c: In function ‘__pyx_gb_7pyhmmer_5easel_19_SequenceBlockIndex_8generator2’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/easel.c:105148:7: warning: unused variable ‘__pyx_t_2’ [-Wunused-variable]
  105148 |   int __pyx_t_2;
         |       ^~~~~~~~~
  [171/173] Building C object src/pyhmmer/CMakeFiles/pyhmmer.plan7.dir/plan7.c.o
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview___cinit__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:12087:10: warning: unused variable ‘__pyx_t_5’ [-Wunused-variable]
  12087 |   size_t __pyx_t_5;
        |          ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:12086:15: warning: unused variable ‘__pyx_t_4’ [-Wunused-variable]
  12086 |   Py_intptr_t __pyx_t_4;
        |               ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_9Alignment_6__sizeof__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:24310:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  24310 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_9Alignment_8hmm_from___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:24998:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  24998 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_9Alignment_6hmm_to___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:25083:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  25083 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_9Alignment_8hmm_name___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:25168:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  25168 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_9Alignment_13hmm_accession___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:25273:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  25273 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_9Alignment_12hmm_sequence___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:25378:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  25378 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_9Alignment_23posterior_probabilities___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:25533:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  25533 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_9Alignment_11target_from___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:25623:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  25623 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_9Alignment_11target_name___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:25708:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  25708 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_9Alignment_15target_sequence___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:25813:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  25813 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_9Alignment_9target_to___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:25903:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  25903 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_9Alignment_17identity_sequence___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:26053:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  26053 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_10Background_1L___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:27188:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  27188 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_10Background_22transition_probability___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:27484:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  27484 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_10Background_5omega___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:27569:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  27569 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_10Background_5omega_2__set__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:27666:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  27666 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_7Builder_11window_beta___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:30595:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  30595 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_f_7pyhmmer_5plan7_7Builder_copy’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:32565:7: warning: unused variable ‘__pyx_t_6’ [-Wunused-variable]
  32565 |   int __pyx_t_6;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_f_7pyhmmer_5plan7_7Cutoffs_as_vector’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:37288:7: warning: unused variable ‘__pyx_t_6’ [-Wunused-variable]
  37288 |   int __pyx_t_6;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_6Domain_8env_from___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:38547:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  38547 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_6Domain_6env_to___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:38632:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  38632 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_6Domain_5score___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:38838:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  38838 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_6Domain_4bias___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:38923:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  38923 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_6Domain_10correction___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:39008:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  39008 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_6Domain_14envelope_score___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:39093:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  39093 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_6Domain_6pvalue___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:39424:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  39424 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_6Domain_8included___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:39509:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  39509 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_6Domain_8reported___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:39817:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  39817 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_7Domains_2__len__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:40523:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  40523 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_7Domains_8included___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:40796:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  40796 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_7Domains_8reported___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:40982:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  40982 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_f_7pyhmmer_5plan7_16EvalueParameters_as_vector’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:43376:7: warning: unused variable ‘__pyx_t_6’ [-Wunused-variable]
  43376 |   int __pyx_t_6;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_3Hit___cinit__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:43912:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  43912 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_3Hit_4name___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:44642:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  44642 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_3Hit_5score___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:45686:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  45686 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_3Hit_9pre_score___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:45771:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  45771 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_3Hit_9sum_score___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:45856:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  45856 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_3Hit_4bias___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:45941:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  45941 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_3Hit_7domains___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:46026:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  46026 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_3Hit_11best_domain___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:46126:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  46126 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_3Hit_6evalue___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:46231:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  46231 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_3Hit_6pvalue___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:46350:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  46350 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_3Hit_8included___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:46435:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  46435 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_3Hit_8reported___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:46733:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  46733 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_3Hit_3new___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:47022:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  47022 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_3Hit_3new_2__set__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:47119:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  47119 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_3Hit_7dropped___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:47227:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  47227 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_3Hit_9duplicate___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:47469:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  47469 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_3HMM_1M___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:53828:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  53828 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_3HMM_4name___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:53913:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  53913 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_3HMM_24transition_probabilities___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:56257:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  56257 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_3HMM_15match_emissions___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:56399:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  56399 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_3HMM_16insert_emissions___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:56548:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  56548 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_3HMM_17evalue_parameters___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:57857:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  57857 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_3HMM_7cutoffs___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:57976:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  57976 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_f_7pyhmmer_5plan7_3HMM_mean_match_entropy’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:58784:7: warning: unused variable ‘__pyx_t_7’ [-Wunused-variable]
  58784 |   int __pyx_t_7;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_f_7pyhmmer_5plan7_3HMM_mean_match_information’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:59026:7: warning: unused variable ‘__pyx_t_7’ [-Wunused-variable]
  59026 |   int __pyx_t_7;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_f_7pyhmmer_5plan7_3HMM_mean_match_relative_entropy’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:59340:7: warning: unused variable ‘__pyx_t_7’ [-Wunused-variable]
  59340 |   int __pyx_t_7;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_f_7pyhmmer_5plan7_3HMM_zero’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:62361:7: warning: unused variable ‘__pyx_t_6’ [-Wunused-variable]
  62361 |   int __pyx_t_6;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_14HMMPressedFile_14__len__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:68076:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  68076 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_16OptimizedProfile_14__sizeof__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:73560:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  73560 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_16OptimizedProfile_1M___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:73645:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  73645 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_16OptimizedProfile_1L___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:73730:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  73730 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_16OptimizedProfile_3rbv___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:74792:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  74792 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_16OptimizedProfile_3sbv___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:74943:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  74943 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_16OptimizedProfile_3tbm___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:75109:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  75109 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_16OptimizedProfile_3tec___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:75194:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  75194 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_16OptimizedProfile_3tjb___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:75279:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  75279 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_16OptimizedProfile_7scale_b___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:75364:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  75364 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_16OptimizedProfile_6base_b___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:75449:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  75449 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_16OptimizedProfile_6bias_b___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:75534:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  75534 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_16OptimizedProfile_7scale_w___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:75619:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  75619 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_16OptimizedProfile_6base_w___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:75704:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  75704 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_16OptimizedProfile_9ddbound_w___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:75789:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  75789 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_16OptimizedProfile_12ncj_roundoff___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:75874:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  75874 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_16OptimizedProfile_3rfv___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:75960:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  75960 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_16OptimizedProfile_3tfv___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:76109:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  76109 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_16OptimizedProfile_2xf___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:76241:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  76241 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_16OptimizedProfile_7offsets___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:76381:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  76381 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_16OptimizedProfile_17evalue_parameters___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:76500:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  76500 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_16OptimizedProfile_7cutoffs___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:76619:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  76619 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_16OptimizedProfile_12compositions___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:76756:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  76756 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_16OptimizedProfile_5local___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:76885:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  76885 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_16OptimizedProfile_8multihit___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:76970:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  76970 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_21OptimizedProfileBlock_6__len__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:79790:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  79790 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_f_7pyhmmer_5plan7_21OptimizedProfileBlock_clear’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:81860:7: warning: unused variable ‘__pyx_t_6’ [-Wunused-variable]
  81860 |   int __pyx_t_6;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_7Offsets_4__copy__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:84790:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  84790 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_8Pipeline_5null2___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:87410:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  87410 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_8Pipeline_5null2_2__set__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:87507:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  87507 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_8Pipeline_11bias_filter___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:87584:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  87584 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_8Pipeline_11bias_filter_2__set__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:87681:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  87681 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_8Pipeline_2F1___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:87758:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  87758 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_8Pipeline_2F1_2__set__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:87855:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  87855 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_8Pipeline_2F2___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:87932:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  87932 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_8Pipeline_2F2_2__set__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:88029:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  88029 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_8Pipeline_2F3___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:88106:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  88106 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_8Pipeline_2F3_2__set__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:88203:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  88203 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_8Pipeline_1E___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:88280:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  88280 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_8Pipeline_1E_2__set__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:88377:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  88377 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_8Pipeline_1T___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:88454:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  88454 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_8Pipeline_4domE___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:88676:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  88676 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_8Pipeline_4domE_2__set__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:88773:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  88773 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_8Pipeline_4domT___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:88850:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  88850 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_8Pipeline_4incE___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:89072:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  89072 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_8Pipeline_4incE_2__set__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:89169:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  89169 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_8Pipeline_4incT___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:89246:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  89246 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_8Pipeline_7incdomE___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:89468:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  89468 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_8Pipeline_7incdomE_2__set__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:89565:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  89565 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_8Pipeline_7incdomT___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:89642:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  89642 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_8Pipeline_11bit_cutoffs___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:90032:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  90032 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_f_7pyhmmer_5plan7_8Pipeline__save_cutoff_parameters’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:90417:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  90417 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_fuse_2__pyx_f_7pyhmmer_5plan7_8Pipeline__get_om_from_query’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:91184:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  91184 |   int __pyx_t_1;
        |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_19LongTargetsPipeline_2B1___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:108076:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  108076 |   int __pyx_t_1;
         |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_19LongTargetsPipeline_2B1_2__set__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:108173:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  108173 |   int __pyx_t_1;
         |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_19LongTargetsPipeline_2B2___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:108250:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  108250 |   int __pyx_t_1;
         |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_19LongTargetsPipeline_2B2_2__set__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:108347:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  108347 |   int __pyx_t_1;
         |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_19LongTargetsPipeline_2B3___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:108424:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  108424 |   int __pyx_t_1;
         |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_19LongTargetsPipeline_2B3_2__set__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:108521:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  108521 |   int __pyx_t_1;
         |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_19LongTargetsPipeline_6strand___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:108598:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  108598 |   int __pyx_t_1;
         |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_fuse_2__pyx_f_7pyhmmer_5plan7_19LongTargetsPipeline__get_om_from_query’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:109756:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  109756 |   int __pyx_t_1;
         |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_7Profile_14__sizeof__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:127210:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  127210 |   int __pyx_t_1;
         |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_7Profile_1M___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:127295:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  127295 |   int __pyx_t_1;
         |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_7Profile_1L___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:127380:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  127380 |   int __pyx_t_1;
         |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_7Profile_7offsets___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:128184:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  128184 |   int __pyx_t_1;
         |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_7Profile_17evalue_parameters___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:128303:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  128303 |   int __pyx_t_1;
         |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_7Profile_7cutoffs___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:128422:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  128422 |   int __pyx_t_1;
         |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_7Profile_5local___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:128558:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  128558 |   int __pyx_t_1;
         |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_7Profile_8multihit___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:128643:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  128643 |   int __pyx_t_1;
         |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_f_7pyhmmer_5plan7_7Profile_to_optimized’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:130305:7: warning: unused variable ‘__pyx_t_6’ [-Wunused-variable]
  130305 |   int __pyx_t_6;
         |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_7TopHits_8__len__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:132334:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  132334 |   int __pyx_t_1;
         |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_5Trace_1M___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:144719:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  144719 |   int __pyx_t_1;
         |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_pf_7pyhmmer_5plan7_5Trace_1L___get__’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:144804:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable]
  144804 |   int __pyx_t_1;
         |       ^~~~~~~~~
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c: In function ‘__pyx_f_7pyhmmer_5plan7_5Trace_expected_accuracy’:
  /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/build/Release/src/pyhmmer/plan7.c:145056:7: warning: unused variable ‘__pyx_t_7’ [-Wunused-variable]
  145056 |   int __pyx_t_7;
         |       ^~~~~~~~~
  [172/173] Linking C shared module src/pyhmmer/easel.cpython-313-x86_64-linux-gnu.so
  [173/173] Linking C shared module src/pyhmmer/plan7.cpython-313-x86_64-linux-gnu.so
  *** Installing project into wheel...
  -- Install configuration: "Release"
  -- Installing: /builddir/build/BUILD/python-pyhmmer-0.11.2-build/.pyproject-builddir/tmpktyej0s5/wheel/platlib/pyhmmer/errors.cpython-313-x86_64-linux-gnu.so
  -- Installing: /builddir/build/BUILD/python-pyhmmer-0.11.2-build/.pyproject-builddir/tmpktyej0s5/wheel/platlib/pyhmmer/easel.cpython-313-x86_64-linux-gnu.so
  -- Installing: /builddir/build/BUILD/python-pyhmmer-0.11.2-build/.pyproject-builddir/tmpktyej0s5/wheel/platlib/pyhmmer/plan7.cpython-313-x86_64-linux-gnu.so
  -- Installing: /builddir/build/BUILD/python-pyhmmer-0.11.2-build/.pyproject-builddir/tmpktyej0s5/wheel/platlib/pyhmmer/daemon.cpython-313-x86_64-linux-gnu.so
  *** Making wheel...
  *** Created pyhmmer-0.11.2-cp313-cp313-linux_x86_64.whl
  Building wheel for pyhmmer (pyproject.toml): finished with status 'done'
  Created wheel for pyhmmer: filename=pyhmmer-0.11.2-cp313-cp313-linux_x86_64.whl size=5189807 sha256=d48c478cf954446af20a39a77b6e4ec9ea04ad3e7f8af78d54b7f5ee66170227
  Stored in directory: /builddir/.cache/pip/wheels/6b/e0/67/272c8b98a91bc9862d8c559b32b6f351d7f6a1dfbede59d88d
Successfully built pyhmmer
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.aMXb78
+ umask 022
+ cd /builddir/build/BUILD/python-pyhmmer-0.11.2-build
+ '[' /builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT '!=' / ']'
+ rm -rf /builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT
++ dirname /builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT
+ mkdir -p /builddir/build/BUILD/python-pyhmmer-0.11.2-build
+ mkdir /builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd pyhmmer-0.11.2
++ ls /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyproject-wheeldir/pyhmmer-0.11.2-cp313-cp313-linux_x86_64.whl
++ xargs basename --multiple
++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/'
+ specifier=pyhmmer==0.11.2
+ '[' -z pyhmmer==0.11.2 ']'
+ TMPDIR=/builddir/build/BUILD/python-pyhmmer-0.11.2-build/.pyproject-builddir
+ /usr/bin/python3 -m pip install --root /builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyproject-wheeldir pyhmmer==0.11.2
Using pip 24.2 from /usr/lib/python3.13/site-packages/pip (python 3.13)
Looking in links: /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyproject-wheeldir
Processing /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyproject-wheeldir/pyhmmer-0.11.2-cp313-cp313-linux_x86_64.whl
Installing collected packages: pyhmmer
Successfully installed pyhmmer-0.11.2
+ '[' -d /builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/bin ']'
+ rm -f /builddir/build/BUILD/python-pyhmmer-0.11.2-build/python-pyhmmer-0.11.2-1.fc41.x86_64-pyproject-ghost-distinfo
+ site_dirs=()
+ '[' -d /builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib/python3.13/site-packages ']'
+ '[' /builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages '!=' /builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib/python3.13/site-packages ']'
+ '[' -d /builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages ']'
+ site_dirs+=("/usr/lib64/python3.13/site-packages")
+ for site_dir in ${site_dirs[@]}
+ for distinfo in /builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT$site_dir/*.dist-info
+ echo '%ghost /usr/lib64/python3.13/site-packages/pyhmmer-0.11.2.dist-info'
+ sed -i s/pip/rpm/ /builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer-0.11.2.dist-info/INSTALLER
+ PYTHONPATH=/usr/lib/rpm/redhat
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT --record /builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer-0.11.2.dist-info/RECORD --output /builddir/build/BUILD/python-pyhmmer-0.11.2-build/python-pyhmmer-0.11.2-1.fc41.x86_64-pyproject-record
+ rm -fv /builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer-0.11.2.dist-info/RECORD
removed '/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer-0.11.2.dist-info/RECORD'
+ rm -fv /builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer-0.11.2.dist-info/REQUESTED
removed '/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer-0.11.2.dist-info/REQUESTED'
++ wc -l /builddir/build/BUILD/python-pyhmmer-0.11.2-build/python-pyhmmer-0.11.2-1.fc41.x86_64-pyproject-ghost-distinfo
++ cut -f1 '-d '
+ lines=1
+ '[' 1 -ne 1 ']'
+ RPM_FILES_ESCAPE=4.19
+ /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/python-pyhmmer-0.11.2-build/python-pyhmmer-0.11.2-1.fc41.x86_64-pyproject-files --output-modules /builddir/build/BUILD/python-pyhmmer-0.11.2-build/python-pyhmmer-0.11.2-1.fc41.x86_64-pyproject-modules --buildroot /builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT --sitelib /usr/lib/python3.13/site-packages --sitearch /usr/lib64/python3.13/site-packages --python-version 3.13 --pyproject-record /builddir/build/BUILD/python-pyhmmer-0.11.2-build/python-pyhmmer-0.11.2-1.fc41.x86_64-pyproject-record --prefix /usr '*' +auto
+ /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 0.11.2-1.fc41 --unique-debug-suffix -0.11.2-1.fc41.x86_64 --unique-debug-src-base python-pyhmmer-0.11.2-1.fc41.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2
find-debuginfo: starting
Extracting debug info from 0 files
Creating .debug symlinks for symlinks to ELF files
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4
Bytecompiling .py files below /builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13 using python3.13
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/bin/add-determinism --brp -j4 /builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT
/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/__pycache__/_version.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/__pycache__/utils.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/__pycache__/utils.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/__pycache__/test_errors.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/__pycache__/test_doctest.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/test_plan7/__pycache__/test_traces.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/test_plan7/__pycache__/test_tracealigner.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/test_plan7/__pycache__/test_optimizedprofile.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/test_plan7/__pycache__/test_pipeline.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/test_plan7/__pycache__/test_hmmfile.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/test_plan7/__pycache__/test_tophits.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/test_plan7/__pycache__/test_hmm.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/test_plan7/__pycache__/test_alignment.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/__pycache__/test_hmmer.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/test_plan7/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/test_plan7/__pycache__/test_profile.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/test_plan7/__pycache__/test_hit.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/test_plan7/__pycache__/test_background.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/test_plan7/__pycache__/test_block.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/test_plan7/__pycache__/test_builder.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/test_easel/__pycache__/test_randomness.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/test_easel/__pycache__/test_vector.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/test_easel/__pycache__/test_msafile.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/test_easel/__pycache__/test_ssi.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/test_easel/__pycache__/test_msa.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/test_easel/__pycache__/test_keyhash.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/test_easel/__pycache__/test_gencode.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/test_easel/__pycache__/test_matrix.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/test_easel/__pycache__/test_bitfield.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/test_easel/__pycache__/test_sequence.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/test_easel/__pycache__/test_alphabet.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/test_easel/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/test_easel/__pycache__/test_block.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/hmmer/__pycache__/_phmmer.cpython-313.opt-1.pyc: replacing with normalized version
/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/hmmer/__pycache__/_phmmer.cpython-313.pyc: replacing with normalized version
/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/hmmer/__pycache__/_hmmsearch.cpython-313.opt-1.pyc: replacing with normalized version
/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/hmmer/__pycache__/_nhmmer.cpython-313.opt-1.pyc: replacing with normalized version
/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/hmmer/__pycache__/_nhmmer.cpython-313.pyc: replacing with normalized version
/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/hmmer/__pycache__/_base.cpython-313.opt-1.pyc: replacing with normalized version
/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/hmmer/__pycache__/_jackhmmer.cpython-313.opt-1.pyc: replacing with normalized version
/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/hmmer/__pycache__/_hmmscan.cpython-313.opt-1.pyc: replacing with normalized version
/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/hmmer/__pycache__/_hmmscan.cpython-313.pyc: replacing with normalized version
/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/hmmer/__pycache__/_base.cpython-313.pyc: replacing with normalized version
/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/tests/test_easel/__pycache__/test_sequencefile.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/hmmer/__pycache__/_jackhmmer.cpython-313.pyc: replacing with normalized version
/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/hmmer/__pycache__/_hmmpress.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/hmmer/__pycache__/_hmmalign.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/hmmer/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/pyhmmer/hmmer/__pycache__/_hmmsearch.cpython-313.pyc: replacing with normalized version
Scanned 29 directories and 240 files,
               processed 51 inodes,
               51 modified (12 replaced + 39 rewritten),
               0 unsupported format, 0 errors
Reading /builddir/build/BUILD/python-pyhmmer-0.11.2-build/SPECPARTS/rpm-debuginfo.specpart
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.aDi5ZS
+ umask 022
+ cd /builddir/build/BUILD/python-pyhmmer-0.11.2-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd pyhmmer-0.11.2
++ cat /builddir/build/BUILD/python-pyhmmer-0.11.2-build/python-pyhmmer-0.11.2-1.fc41.x86_64-pyproject-modules
+ '[' -z 'pyhmmer
pyhmmer.daemon
pyhmmer.easel
pyhmmer.errors
pyhmmer.hmmer
pyhmmer.plan7
pyhmmer.tests
pyhmmer.tests.test_doctest
pyhmmer.tests.test_easel
pyhmmer.tests.test_easel.test_alphabet
pyhmmer.tests.test_easel.test_bitfield
pyhmmer.tests.test_easel.test_block
pyhmmer.tests.test_easel.test_gencode
pyhmmer.tests.test_easel.test_keyhash
pyhmmer.tests.test_easel.test_matrix
pyhmmer.tests.test_easel.test_msa
pyhmmer.tests.test_easel.test_msafile
pyhmmer.tests.test_easel.test_randomness
pyhmmer.tests.test_easel.test_sequence
pyhmmer.tests.test_easel.test_sequencefile
pyhmmer.tests.test_easel.test_ssi
pyhmmer.tests.test_easel.test_vector
pyhmmer.tests.test_errors
pyhmmer.tests.test_hmmer
pyhmmer.tests.test_plan7
pyhmmer.tests.test_plan7.test_alignment
pyhmmer.tests.test_plan7.test_background
pyhmmer.tests.test_plan7.test_block
pyhmmer.tests.test_plan7.test_builder
pyhmmer.tests.test_plan7.test_hit
pyhmmer.tests.test_plan7.test_hmm
pyhmmer.tests.test_plan7.test_hmmfile
pyhmmer.tests.test_plan7.test_optimizedprofile
pyhmmer.tests.test_plan7.test_pipeline
pyhmmer.tests.test_plan7.test_profile
pyhmmer.tests.test_plan7.test_tophits
pyhmmer.tests.test_plan7.test_tracealigner
pyhmmer.tests.test_plan7.test_traces
pyhmmer.tests.utils
pyhmmer.utils' ']'
+ '[' '!' -f /builddir/build/BUILD/python-pyhmmer-0.11.2-build/python-pyhmmer-0.11.2-1.fc41.x86_64-pyproject-modules ']'
+ PATH=/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
+ PYTHONPATH=/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages:/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib/python3.13/site-packages
+ _PYTHONSITE=/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib64/python3.13/site-packages:/builddir/build/BUILD/python-pyhmmer-0.11.2-build/BUILDROOT/usr/lib/python3.13/site-packages
+ PYTHONDONTWRITEBYTECODE=1
+ /usr/bin/python3 -sP /usr/lib/rpm/redhat/import_all_modules.py -f /builddir/build/BUILD/python-pyhmmer-0.11.2-build/python-pyhmmer-0.11.2-1.fc41.x86_64-pyproject-modules -t
Check import: pyhmmer
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: python3-pyhmmer-0.11.2-1.fc41.x86_64
Provides: python-pyhmmer = 0.11.2-1.fc41 python3-pyhmmer = 0.11.2-1.fc41 python3-pyhmmer(x86-64) = 0.11.2-1.fc41 python3.13-pyhmmer = 0.11.2-1.fc41 python3.13dist(pyhmmer) = 0.11.2 python3dist(pyhmmer) = 0.11.2
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: (python3.13dist(psutil) < 8~~ with python3.13dist(psutil) >= 6) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) python(abi) = 3.13 rtld(GNU_HASH)
Processing files: python3-pyhmmer+test-0.11.2-1.fc41.x86_64
Provides: python-pyhmmer+test = 0.11.2-1.fc41 python3-pyhmmer+test = 0.11.2-1.fc41 python3-pyhmmer+test(x86-64) = 0.11.2-1.fc41 python3.13-pyhmmer+test = 0.11.2-1.fc41 python3.13dist(pyhmmer[test]) = 0.11.2 python3dist(pyhmmer[test]) = 0.11.2
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: python(abi) = 3.13
Processing files: python-pyhmmer-debugsource-0.11.2-1.fc41.x86_64

RPM build errors:
error: Empty %files file /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/debugsourcefiles.list
    Empty %files file /builddir/build/BUILD/python-pyhmmer-0.11.2-build/pyhmmer-0.11.2/debugsourcefiles.list
Finish: rpmbuild python-pyhmmer-0.11.2-1.fc41.src.rpm
Finish: build phase for python-pyhmmer-0.11.2-1.fc41.src.rpm
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-41-x86_64-1761574193.789442/root/var/log/dnf5.log
INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz
/bin/tar: Removing leading `/' from member names
ERROR: Exception(/var/lib/copr-rpmbuild/results/python-pyhmmer-0.11.2-1.fc41.src.rpm) Config(fedora-41-x86_64) 2 minutes 0 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_failure=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
ERROR: Command failed: 
 # /usr/bin/systemd-nspawn -q -M 2673a944d6da42eea4d91f7e07e1e172 -D /var/lib/mock/fedora-41-x86_64-1761574193.789442/root -a -u mockbuild --capability=cap_ipc_lock --capability=cap_ipc_lock --bind=/tmp/mock-resolv.q84obvzi:/etc/resolv.conf --bind=/dev/btrfs-control --bind=/dev/mapper/control --bind=/dev/fuse --bind=/dev/loop-control --bind=/dev/loop0 --bind=/dev/loop1 --bind=/dev/loop2 --bind=/dev/loop3 --bind=/dev/loop4 --bind=/dev/loop5 --bind=/dev/loop6 --bind=/dev/loop7 --bind=/dev/loop8 --bind=/dev/loop9 --bind=/dev/loop10 --bind=/dev/loop11 --console=pipe --setenv=TERM=vt100 --setenv=SHELL=/bin/bash --setenv=HOME=/builddir --setenv=HOSTNAME=mock --setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin '--setenv=PROMPT_COMMAND=printf "\033]0;<mock-chroot>\007"' '--setenv=PS1=<mock-chroot> \s-\v\$ ' --setenv=LANG=C.UTF-8 --resolv-conf=off bash --login -c '/usr/bin/rpmbuild -ba --noprep  --target x86_64 /builddir/build/originals/python-pyhmmer.spec'

Copr build error: Build failed