Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c116' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/9741508-fedora-41-x86_64 --chroot fedora-41-x86_64 Version: 1.6 PID: 2740 Logging PID: 2742 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'build_id': 9741508, 'buildroot_pkgs': [], 'chroot': 'fedora-41-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '707dfd02b65410a50a3f48e8aa906a8941f3e253', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/@copr/PyPI/python-biopython', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'python-biopython', 'package_version': '1.86-1', 'project_dirname': 'PyPI', 'project_name': 'PyPI', 'project_owner': '@copr', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/@copr/PyPI/fedora-41-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': '@copr/PyPI--ksurma', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': None, 'submitter': 'ksurma', 'tags': [], 'task_id': '9741508-fedora-41-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/@copr/PyPI/python-biopython /var/lib/copr-rpmbuild/workspace/workdir-7j0ty51u/python-biopython --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/@copr/PyPI/python-biopython', '/var/lib/copr-rpmbuild/workspace/workdir-7j0ty51u/python-biopython', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-7j0ty51u/python-biopython'... Running: git checkout 707dfd02b65410a50a3f48e8aa906a8941f3e253 -- cmd: ['git', 'checkout', '707dfd02b65410a50a3f48e8aa906a8941f3e253', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-7j0ty51u/python-biopython rc: 0 stdout: stderr: Note: switching to '707dfd02b65410a50a3f48e8aa906a8941f3e253'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 707dfd0 automatic import of python-biopython Running: dist-git-client sources cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-7j0ty51u/python-biopython rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading biopython-1.86.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o biopython-1.86.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/@copr/PyPI/python-biopython/biopython-1.86.tar.gz/md5/47ca510a7c46e6e42439112cf2cc24b3/biopython-1.86.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 18.9M 100 18.9M 0 0 64.4M 0 --:--:-- --:--:-- --:--:-- 64.5M INFO: Reading stdout from command: md5sum biopython-1.86.tar.gz tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-7j0ty51u/python-biopython/python-biopython.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-7j0ty51u/python-biopython --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1761692841.236821 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 6.5 starting (python version = 3.13.7, NVR = mock-6.5-1.fc42), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-7j0ty51u/python-biopython/python-biopython.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-7j0ty51u/python-biopython --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1761692841.236821 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-7j0ty51u/python-biopython/python-biopython.spec) Config(fedora-41-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 6.5 INFO: Mock Version: 6.5 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-bootstrap-1761692841.236821/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using container image: registry.fedoraproject.org/fedora:41 INFO: Pulling image: registry.fedoraproject.org/fedora:41 INFO: Tagging container image as mock-bootstrap-6fd7f142-b4f5-41a4-b720-2bfe663abb8b INFO: Checking that 3f7274d58a955bfdd4dda5604c587e10f8968f213523b28612646811bb5343f2 image matches host's architecture INFO: Copy content of container 3f7274d58a955bfdd4dda5604c587e10f8968f213523b28612646811bb5343f2 to /var/lib/mock/fedora-41-x86_64-bootstrap-1761692841.236821/root INFO: mounting 3f7274d58a955bfdd4dda5604c587e10f8968f213523b28612646811bb5343f2 with podman image mount INFO: image 3f7274d58a955bfdd4dda5604c587e10f8968f213523b28612646811bb5343f2 as /var/lib/containers/storage/overlay/4797793be3ff4f6249767450ba9bad9af46f4212b2f6a074d1a8951bb91cdc0e/merged INFO: umounting image 3f7274d58a955bfdd4dda5604c587e10f8968f213523b28612646811bb5343f2 (/var/lib/containers/storage/overlay/4797793be3ff4f6249767450ba9bad9af46f4212b2f6a074d1a8951bb91cdc0e/merged) with podman image umount INFO: Removing image mock-bootstrap-6fd7f142-b4f5-41a4-b720-2bfe663abb8b INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-1761692841.236821/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.20.1-1.fc41.x86_64 rpm-sequoia-1.7.0-5.fc41.x86_64 dnf5-5.2.16.0-1.fc41.x86_64 dnf5-plugins-5.2.16.0-1.fc41.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: Copr repository 100% | 40.1 MiB/s | 42.7 MiB | 00m01s updates 100% | 7.5 MiB/s | 14.6 MiB | 00m02s fedora 100% | 14.0 MiB/s | 35.4 MiB | 00m03s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash x86_64 5.2.32-1.fc41 fedora 8.2 MiB bzip2 x86_64 1.0.8-19.fc41 fedora 95.7 KiB coreutils x86_64 9.5-12.fc41 updates 5.5 MiB cpio x86_64 2.15-2.fc41 fedora 1.1 MiB diffutils x86_64 3.10-8.fc41 fedora 1.6 MiB fedora-release-common noarch 41-33 updates 19.7 KiB findutils x86_64 1:4.10.0-4.fc41 fedora 1.8 MiB gawk x86_64 5.3.0-4.fc41 fedora 1.7 MiB glibc-minimal-langpack x86_64 2.40-28.fc41 updates 0.0 B grep x86_64 3.11-9.fc41 fedora 1.0 MiB gzip x86_64 1.13-2.fc41 fedora 389.0 KiB info x86_64 7.1.1-1.fc41 updates 361.7 KiB patch x86_64 2.7.6-25.fc41 fedora 266.7 KiB redhat-rpm-config noarch 294-1.fc41 updates 183.6 KiB rpm-build x86_64 4.20.1-1.fc41 updates 193.8 KiB sed x86_64 4.9-3.fc41 fedora 861.5 KiB shadow-utils x86_64 2:4.15.1-12.fc41 fedora 4.1 MiB tar x86_64 2:1.35-4.fc41 fedora 2.9 MiB unzip x86_64 6.0-64.fc41 fedora 386.8 KiB util-linux x86_64 2.40.4-1.fc41 updates 3.6 MiB which x86_64 2.21-42.fc41 fedora 80.2 KiB xz x86_64 1:5.8.1-2.fc41 updates 1.3 MiB Installing dependencies: add-determinism x86_64 0.3.6-3.fc41 updates 2.4 MiB alternatives x86_64 1.31-1.fc41 updates 64.8 KiB ansible-srpm-macros noarch 1-16.fc41 fedora 35.7 KiB audit-libs x86_64 4.1.1-1.fc41 updates 387.1 KiB authselect x86_64 1.5.0-8.fc41 fedora 157.6 KiB authselect-libs x86_64 1.5.0-8.fc41 fedora 822.2 KiB basesystem noarch 11-21.fc41 fedora 0.0 B binutils x86_64 2.43.1-8.fc41 updates 27.5 MiB build-reproducibility-srpm-macros noarch 0.3.6-3.fc41 updates 735.0 B bzip2-libs x86_64 1.0.8-19.fc41 fedora 80.7 KiB ca-certificates noarch 2024.2.69_v8.0.401-1.0.fc41 fedora 2.4 MiB coreutils-common x86_64 9.5-12.fc41 updates 11.2 MiB cracklib x86_64 2.9.11-6.fc41 fedora 238.9 KiB crypto-policies noarch 20250707-1.git836bbee.fc41 updates 143.8 KiB curl x86_64 8.9.1-4.fc41 updates 796.2 KiB cyrus-sasl-lib x86_64 2.1.28-27.fc41 fedora 2.3 MiB debugedit x86_64 5.1-6.fc41 updates 200.9 KiB dwz x86_64 0.15-8.fc41 fedora 298.9 KiB ed x86_64 1.20.2-2.fc41 fedora 146.9 KiB efi-srpm-macros noarch 5-13.fc41 updates 40.2 KiB elfutils x86_64 0.193-2.fc41 updates 3.0 MiB elfutils-debuginfod-client x86_64 0.193-2.fc41 updates 84.1 KiB elfutils-default-yama-scope noarch 0.193-2.fc41 updates 1.8 KiB elfutils-libelf x86_64 0.193-2.fc41 updates 1.2 MiB elfutils-libs x86_64 0.193-2.fc41 updates 686.6 KiB fedora-gpg-keys noarch 41-3 updates 128.2 KiB fedora-release noarch 41-33 updates 0.0 B fedora-release-identity-basic noarch 41-33 updates 654.0 B fedora-repos noarch 41-3 updates 4.9 KiB file x86_64 5.45-7.fc41 fedora 103.5 KiB file-libs x86_64 5.45-7.fc41 fedora 9.9 MiB filesystem x86_64 3.18-23.fc41 fedora 106.0 B fonts-srpm-macros noarch 1:2.0.5-17.fc41 fedora 55.8 KiB forge-srpm-macros noarch 0.4.0-1.fc41 updates 38.9 KiB fpc-srpm-macros noarch 1.3-13.fc41 fedora 144.0 B gdb-minimal x86_64 16.3-1.fc41 updates 13.3 MiB gdbm x86_64 1:1.23-7.fc41 fedora 460.9 KiB gdbm-libs x86_64 1:1.23-7.fc41 fedora 121.9 KiB ghc-srpm-macros noarch 1.9.1-2.fc41 fedora 747.0 B glibc x86_64 2.40-28.fc41 updates 6.7 MiB glibc-common x86_64 2.40-28.fc41 updates 1.0 MiB glibc-gconv-extra x86_64 2.40-28.fc41 updates 8.0 MiB gmp x86_64 1:6.3.0-2.fc41 fedora 811.4 KiB gnat-srpm-macros noarch 6-6.fc41 fedora 1.0 KiB go-srpm-macros noarch 3.8.0-1.fc41 updates 61.9 KiB jansson x86_64 2.13.1-10.fc41 fedora 88.3 KiB json-c x86_64 0.17-4.fc41 fedora 82.4 KiB kernel-srpm-macros noarch 1.0-24.fc41 fedora 1.9 KiB keyutils-libs x86_64 1.6.3-4.fc41 fedora 54.4 KiB krb5-libs x86_64 1.21.3-5.fc41 updates 2.3 MiB libacl x86_64 2.3.2-2.fc41 fedora 40.0 KiB libarchive x86_64 3.7.4-4.fc41 updates 926.6 KiB libattr x86_64 2.5.2-4.fc41 fedora 28.5 KiB libblkid x86_64 2.40.4-1.fc41 updates 257.2 KiB libbrotli x86_64 1.1.0-5.fc41 fedora 837.6 KiB libcap x86_64 2.70-4.fc41 fedora 220.2 KiB libcap-ng x86_64 0.8.5-3.fc41 fedora 69.2 KiB libcom_err x86_64 1.47.1-6.fc41 fedora 67.2 KiB libcurl x86_64 8.9.1-4.fc41 updates 822.1 KiB libeconf x86_64 0.6.2-3.fc41 fedora 58.0 KiB libevent x86_64 2.1.12-14.fc41 fedora 895.7 KiB libfdisk x86_64 2.40.4-1.fc41 updates 356.4 KiB libffi x86_64 3.4.6-3.fc41 fedora 86.4 KiB libgcc x86_64 14.3.1-4.fc41 updates 274.6 KiB libgomp x86_64 14.3.1-4.fc41 updates 523.6 KiB libidn2 x86_64 2.3.8-1.fc41 updates 556.6 KiB libmount x86_64 2.40.4-1.fc41 updates 348.8 KiB libnghttp2 x86_64 1.62.1-3.fc41 updates 174.1 KiB libnsl2 x86_64 2.0.1-2.fc41 fedora 57.9 KiB libpkgconf x86_64 2.3.0-1.fc41 fedora 78.2 KiB libpsl x86_64 0.21.5-4.fc41 fedora 80.5 KiB libpwquality x86_64 1.4.5-11.fc41 fedora 417.8 KiB libselinux x86_64 3.7-5.fc41 fedora 181.0 KiB libsemanage x86_64 3.7-2.fc41 fedora 293.5 KiB libsepol x86_64 3.7-2.fc41 fedora 817.8 KiB libsmartcols x86_64 2.40.4-1.fc41 updates 176.2 KiB libssh x86_64 0.11.3-1.fc41 updates 571.2 KiB libssh-config noarch 0.11.3-1.fc41 updates 277.0 B libstdc++ x86_64 14.3.1-4.fc41 updates 2.8 MiB libtasn1 x86_64 4.20.0-1.fc41 updates 180.4 KiB libtirpc x86_64 1.3.6-1.rc3.fc41 updates 197.6 KiB libtool-ltdl x86_64 2.4.7-12.fc41 fedora 66.2 KiB libunistring x86_64 1.1-8.fc41 fedora 1.7 MiB libutempter x86_64 1.2.1-15.fc41 fedora 57.7 KiB libuuid x86_64 2.40.4-1.fc41 updates 39.9 KiB libverto x86_64 0.3.2-9.fc41 fedora 29.5 KiB libxcrypt x86_64 4.4.38-7.fc41 updates 288.5 KiB libxml2 x86_64 2.12.10-1.fc41 updates 1.7 MiB libzstd x86_64 1.5.7-1.fc41 updates 804.0 KiB lua-libs x86_64 5.4.8-1.fc41 updates 285.0 KiB lua-srpm-macros noarch 1-14.fc41 fedora 1.3 KiB lz4-libs x86_64 1.10.0-1.fc41 fedora 145.5 KiB mpfr x86_64 4.2.1-5.fc41 fedora 832.1 KiB ncurses-base noarch 6.5-2.20240629.fc41 fedora 326.3 KiB ncurses-libs x86_64 6.5-2.20240629.fc41 fedora 975.2 KiB ocaml-srpm-macros noarch 10-3.fc41 fedora 1.9 KiB openblas-srpm-macros noarch 2-18.fc41 fedora 112.0 B openldap x86_64 2.6.10-1.fc41 updates 646.0 KiB openssl-libs x86_64 1:3.2.6-2.fc41 updates 7.8 MiB p11-kit x86_64 0.25.5-4.fc41 updates 2.2 MiB p11-kit-trust x86_64 0.25.5-4.fc41 updates 395.4 KiB package-notes-srpm-macros noarch 0.5-12.fc41 fedora 1.6 KiB pam x86_64 1.6.1-8.fc41 updates 1.8 MiB pam-libs x86_64 1.6.1-8.fc41 updates 139.0 KiB pcre2 x86_64 10.44-1.fc41.1 fedora 653.5 KiB pcre2-syntax noarch 10.44-1.fc41.1 fedora 251.6 KiB perl-srpm-macros noarch 1-56.fc41 fedora 861.0 B pkgconf x86_64 2.3.0-1.fc41 fedora 88.6 KiB pkgconf-m4 noarch 2.3.0-1.fc41 fedora 14.4 KiB pkgconf-pkg-config x86_64 2.3.0-1.fc41 fedora 989.0 B popt x86_64 1.19-7.fc41 fedora 136.9 KiB publicsuffix-list-dafsa noarch 20250616-1.fc41 updates 69.1 KiB pyproject-srpm-macros noarch 1.18.4-1.fc41 updates 1.9 KiB python-srpm-macros noarch 3.13-5.fc41 updates 51.0 KiB qt5-srpm-macros noarch 5.15.17-1.fc41 updates 500.0 B qt6-srpm-macros noarch 6.8.3-1.fc41 updates 456.0 B readline x86_64 8.2-10.fc41 fedora 493.2 KiB rpm x86_64 4.20.1-1.fc41 updates 3.1 MiB rpm-build-libs x86_64 4.20.1-1.fc41 updates 210.7 KiB rpm-libs x86_64 4.20.1-1.fc41 updates 730.0 KiB rpm-sequoia x86_64 1.7.0-5.fc41 updates 2.4 MiB rust-srpm-macros noarch 26.4-1.fc41 updates 4.8 KiB setup noarch 2.15.0-8.fc41 updates 720.7 KiB sqlite-libs x86_64 3.46.1-5.fc41 updates 1.5 MiB systemd-libs x86_64 256.17-1.fc41 updates 2.0 MiB util-linux-core x86_64 2.40.4-1.fc41 updates 1.5 MiB xxhash-libs x86_64 0.8.3-1.fc41 updates 88.5 KiB xz-libs x86_64 1:5.8.1-2.fc41 updates 217.9 KiB zig-srpm-macros noarch 1-3.fc41 fedora 1.1 KiB zip x86_64 3.0-41.fc41 fedora 703.2 KiB zlib-ng-compat x86_64 2.2.3-2.fc41 updates 141.9 KiB zstd x86_64 1.5.7-1.fc41 updates 1.7 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 154 packages Total size of inbound packages is 53 MiB. Need to download 53 MiB. After this operation, 182 MiB extra will be used (install 182 MiB, remove 0 B). [ 1/154] bzip2-0:1.0.8-19.fc41.x86_64 100% | 273.6 KiB/s | 52.5 KiB | 00m00s [ 2/154] cpio-0:2.15-2.fc41.x86_64 100% | 757.9 KiB/s | 291.8 KiB | 00m00s [ 3/154] diffutils-0:3.10-8.fc41.x86_6 100% | 1.3 MiB/s | 405.4 KiB | 00m00s [ 4/154] findutils-1:4.10.0-4.fc41.x86 100% | 3.2 MiB/s | 548.5 KiB | 00m00s [ 5/154] gzip-0:1.13-2.fc41.x86_64 100% | 3.3 MiB/s | 170.2 KiB | 00m00s [ 6/154] patch-0:2.7.6-25.fc41.x86_64 100% | 2.5 MiB/s | 131.0 KiB | 00m00s [ 7/154] grep-0:3.11-9.fc41.x86_64 100% | 1.9 MiB/s | 299.7 KiB | 00m00s [ 8/154] sed-0:4.9-3.fc41.x86_64 100% | 5.1 MiB/s | 317.7 KiB | 00m00s [ 9/154] bash-0:5.2.32-1.fc41.x86_64 100% | 2.4 MiB/s | 1.8 MiB | 00m01s [ 10/154] unzip-0:6.0-64.fc41.x86_64 100% | 2.6 MiB/s | 184.9 KiB | 00m00s [ 11/154] tar-2:1.35-4.fc41.x86_64 100% | 8.0 MiB/s | 860.7 KiB | 00m00s [ 12/154] which-0:2.21-42.fc41.x86_64 100% | 602.3 KiB/s | 41.6 KiB | 00m00s [ 13/154] fedora-release-common-0:41-33 100% | 214.4 KiB/s | 23.2 KiB | 00m00s [ 14/154] 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-------------------------------------------------------------------------------- [154/154] Total 100% | 5.4 MiB/s | 53.2 MiB | 00m10s Running transaction Importing OpenPGP key 0xE99D6AD1: UserID : "Fedora (41) " Fingerprint: 466CF2D8B60BC3057AA9453ED0622462E99D6AD1 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-41-primary The key was successfully imported. 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| 00m00s [116/156] Installing coreutils-common-0 100% | 248.7 MiB/s | 11.2 MiB | 00m00s [117/156] Installing openssl-libs-1:3.2 100% | 301.4 MiB/s | 7.8 MiB | 00m00s [118/156] Installing coreutils-0:9.5-12 100% | 104.6 MiB/s | 5.5 MiB | 00m00s [119/156] Installing ca-certificates-0: 100% | 2.4 MiB/s | 2.4 MiB | 00m01s [120/156] Installing krb5-libs-0:1.21.3 100% | 178.4 MiB/s | 2.3 MiB | 00m00s [121/156] Installing libarchive-0:3.7.4 100% | 181.4 MiB/s | 928.6 KiB | 00m00s [122/156] Installing libtirpc-0:1.3.6-1 100% | 97.4 MiB/s | 199.4 KiB | 00m00s [123/156] Installing gzip-0:1.13-2.fc41 100% | 96.3 MiB/s | 394.6 KiB | 00m00s [124/156] Installing authselect-libs-0: 100% | 90.8 MiB/s | 837.2 KiB | 00m00s [125/156] Installing cracklib-0:2.9.11- 100% | 34.9 MiB/s | 250.3 KiB | 00m00s [126/156] Installing libpwquality-0:1.4 100% | 52.5 MiB/s | 430.1 KiB | 00m00s [127/156] Installing libnsl2-0:2.0.1-2. 100% | 28.8 MiB/s | 59.1 KiB | 00m00s [128/156] Installing pam-0:1.6.1-8.fc41 100% | 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Installing curl-0:8.9.1-4.fc4 100% | 18.6 MiB/s | 798.6 KiB | 00m00s [142/156] Installing rpm-0:4.20.1-1.fc4 100% | 71.8 MiB/s | 2.5 MiB | 00m00s [143/156] Installing lua-srpm-macros-0: 100% | 1.9 MiB/s | 1.9 KiB | 00m00s [144/156] Installing zig-srpm-macros-0: 100% | 1.6 MiB/s | 1.7 KiB | 00m00s [145/156] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.2 KiB | 00m00s [146/156] Installing fonts-srpm-macros- 100% | 55.7 MiB/s | 57.0 KiB | 00m00s [147/156] Installing forge-srpm-macros- 100% | 39.3 MiB/s | 40.3 KiB | 00m00s [148/156] Installing go-srpm-macros-0:3 100% | 61.6 MiB/s | 63.0 KiB | 00m00s [149/156] Installing python-srpm-macros 100% | 25.5 MiB/s | 52.2 KiB | 00m00s [150/156] Installing redhat-rpm-config- 100% | 37.1 MiB/s | 190.2 KiB | 00m00s [151/156] Installing rpm-build-0:4.20.1 100% | 39.5 MiB/s | 202.3 KiB | 00m00s [152/156] Installing pyproject-srpm-mac 100% | 1.2 MiB/s | 2.5 KiB | 00m00s [153/156] Installing util-linux-0:2.40. 100% | 55.3 MiB/s | 3.7 MiB | 00m00s [154/156] Installing authselect-0:1.5.0 100% | 31.6 MiB/s | 161.9 KiB | 00m00s [155/156] Installing which-0:2.21-42.fc 100% | 40.2 MiB/s | 82.4 KiB | 00m00s [156/156] Installing info-0:7.1.1-1.fc4 100% | 244.4 KiB/s | 362.2 KiB | 00m01s Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.3.6-3.fc41.x86_64 alternatives-1.31-1.fc41.x86_64 ansible-srpm-macros-1-16.fc41.noarch audit-libs-4.1.1-1.fc41.x86_64 authselect-1.5.0-8.fc41.x86_64 authselect-libs-1.5.0-8.fc41.x86_64 basesystem-11-21.fc41.noarch bash-5.2.32-1.fc41.x86_64 binutils-2.43.1-8.fc41.x86_64 build-reproducibility-srpm-macros-0.3.6-3.fc41.noarch bzip2-1.0.8-19.fc41.x86_64 bzip2-libs-1.0.8-19.fc41.x86_64 ca-certificates-2024.2.69_v8.0.401-1.0.fc41.noarch coreutils-9.5-12.fc41.x86_64 coreutils-common-9.5-12.fc41.x86_64 cpio-2.15-2.fc41.x86_64 cracklib-2.9.11-6.fc41.x86_64 crypto-policies-20250707-1.git836bbee.fc41.noarch curl-8.9.1-4.fc41.x86_64 cyrus-sasl-lib-2.1.28-27.fc41.x86_64 debugedit-5.1-6.fc41.x86_64 diffutils-3.10-8.fc41.x86_64 dwz-0.15-8.fc41.x86_64 ed-1.20.2-2.fc41.x86_64 efi-srpm-macros-5-13.fc41.noarch elfutils-0.193-2.fc41.x86_64 elfutils-debuginfod-client-0.193-2.fc41.x86_64 elfutils-default-yama-scope-0.193-2.fc41.noarch elfutils-libelf-0.193-2.fc41.x86_64 elfutils-libs-0.193-2.fc41.x86_64 fedora-gpg-keys-41-3.noarch fedora-release-41-33.noarch fedora-release-common-41-33.noarch fedora-release-identity-basic-41-33.noarch fedora-repos-41-3.noarch file-5.45-7.fc41.x86_64 file-libs-5.45-7.fc41.x86_64 filesystem-3.18-23.fc41.x86_64 findutils-4.10.0-4.fc41.x86_64 fonts-srpm-macros-2.0.5-17.fc41.noarch forge-srpm-macros-0.4.0-1.fc41.noarch fpc-srpm-macros-1.3-13.fc41.noarch gawk-5.3.0-4.fc41.x86_64 gdb-minimal-16.3-1.fc41.x86_64 gdbm-1.23-7.fc41.x86_64 gdbm-libs-1.23-7.fc41.x86_64 ghc-srpm-macros-1.9.1-2.fc41.noarch glibc-2.40-28.fc41.x86_64 glibc-common-2.40-28.fc41.x86_64 glibc-gconv-extra-2.40-28.fc41.x86_64 glibc-minimal-langpack-2.40-28.fc41.x86_64 gmp-6.3.0-2.fc41.x86_64 gnat-srpm-macros-6-6.fc41.noarch go-srpm-macros-3.8.0-1.fc41.noarch gpg-pubkey-e99d6ad1-64d2612c grep-3.11-9.fc41.x86_64 gzip-1.13-2.fc41.x86_64 info-7.1.1-1.fc41.x86_64 jansson-2.13.1-10.fc41.x86_64 json-c-0.17-4.fc41.x86_64 kernel-srpm-macros-1.0-24.fc41.noarch keyutils-libs-1.6.3-4.fc41.x86_64 krb5-libs-1.21.3-5.fc41.x86_64 libacl-2.3.2-2.fc41.x86_64 libarchive-3.7.4-4.fc41.x86_64 libattr-2.5.2-4.fc41.x86_64 libblkid-2.40.4-1.fc41.x86_64 libbrotli-1.1.0-5.fc41.x86_64 libcap-2.70-4.fc41.x86_64 libcap-ng-0.8.5-3.fc41.x86_64 libcom_err-1.47.1-6.fc41.x86_64 libcurl-8.9.1-4.fc41.x86_64 libeconf-0.6.2-3.fc41.x86_64 libevent-2.1.12-14.fc41.x86_64 libfdisk-2.40.4-1.fc41.x86_64 libffi-3.4.6-3.fc41.x86_64 libgcc-14.3.1-4.fc41.x86_64 libgomp-14.3.1-4.fc41.x86_64 libidn2-2.3.8-1.fc41.x86_64 libmount-2.40.4-1.fc41.x86_64 libnghttp2-1.62.1-3.fc41.x86_64 libnsl2-2.0.1-2.fc41.x86_64 libpkgconf-2.3.0-1.fc41.x86_64 libpsl-0.21.5-4.fc41.x86_64 libpwquality-1.4.5-11.fc41.x86_64 libselinux-3.7-5.fc41.x86_64 libsemanage-3.7-2.fc41.x86_64 libsepol-3.7-2.fc41.x86_64 libsmartcols-2.40.4-1.fc41.x86_64 libssh-0.11.3-1.fc41.x86_64 libssh-config-0.11.3-1.fc41.noarch libstdc++-14.3.1-4.fc41.x86_64 libtasn1-4.20.0-1.fc41.x86_64 libtirpc-1.3.6-1.rc3.fc41.x86_64 libtool-ltdl-2.4.7-12.fc41.x86_64 libunistring-1.1-8.fc41.x86_64 libutempter-1.2.1-15.fc41.x86_64 libuuid-2.40.4-1.fc41.x86_64 libverto-0.3.2-9.fc41.x86_64 libxcrypt-4.4.38-7.fc41.x86_64 libxml2-2.12.10-1.fc41.x86_64 libzstd-1.5.7-1.fc41.x86_64 lua-libs-5.4.8-1.fc41.x86_64 lua-srpm-macros-1-14.fc41.noarch lz4-libs-1.10.0-1.fc41.x86_64 mpfr-4.2.1-5.fc41.x86_64 ncurses-base-6.5-2.20240629.fc41.noarch ncurses-libs-6.5-2.20240629.fc41.x86_64 ocaml-srpm-macros-10-3.fc41.noarch openblas-srpm-macros-2-18.fc41.noarch openldap-2.6.10-1.fc41.x86_64 openssl-libs-3.2.6-2.fc41.x86_64 p11-kit-0.25.5-4.fc41.x86_64 p11-kit-trust-0.25.5-4.fc41.x86_64 package-notes-srpm-macros-0.5-12.fc41.noarch pam-1.6.1-8.fc41.x86_64 pam-libs-1.6.1-8.fc41.x86_64 patch-2.7.6-25.fc41.x86_64 pcre2-10.44-1.fc41.1.x86_64 pcre2-syntax-10.44-1.fc41.1.noarch perl-srpm-macros-1-56.fc41.noarch pkgconf-2.3.0-1.fc41.x86_64 pkgconf-m4-2.3.0-1.fc41.noarch pkgconf-pkg-config-2.3.0-1.fc41.x86_64 popt-1.19-7.fc41.x86_64 publicsuffix-list-dafsa-20250616-1.fc41.noarch pyproject-srpm-macros-1.18.4-1.fc41.noarch python-srpm-macros-3.13-5.fc41.noarch qt5-srpm-macros-5.15.17-1.fc41.noarch qt6-srpm-macros-6.8.3-1.fc41.noarch readline-8.2-10.fc41.x86_64 redhat-rpm-config-294-1.fc41.noarch rpm-4.20.1-1.fc41.x86_64 rpm-build-4.20.1-1.fc41.x86_64 rpm-build-libs-4.20.1-1.fc41.x86_64 rpm-libs-4.20.1-1.fc41.x86_64 rpm-sequoia-1.7.0-5.fc41.x86_64 rust-srpm-macros-26.4-1.fc41.noarch sed-4.9-3.fc41.x86_64 setup-2.15.0-8.fc41.noarch shadow-utils-4.15.1-12.fc41.x86_64 sqlite-libs-3.46.1-5.fc41.x86_64 systemd-libs-256.17-1.fc41.x86_64 tar-1.35-4.fc41.x86_64 unzip-6.0-64.fc41.x86_64 util-linux-2.40.4-1.fc41.x86_64 util-linux-core-2.40.4-1.fc41.x86_64 which-2.21-42.fc41.x86_64 xxhash-libs-0.8.3-1.fc41.x86_64 xz-5.8.1-2.fc41.x86_64 xz-libs-5.8.1-2.fc41.x86_64 zig-srpm-macros-1-3.fc41.noarch zip-3.0-41.fc41.x86_64 zlib-ng-compat-2.2.3-2.fc41.x86_64 zstd-1.5.7-1.fc41.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1761609600 Wrote: /builddir/build/SRPMS/python-biopython-1.86-1.fc41.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-41-x86_64-1761692841.236821/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-7j0ty51u/python-biopython/python-biopython.spec) Config(child) 0 minutes 48 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/python-biopython-1.86-1.fc41.src.rpm) Config(fedora-41-x86_64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-bootstrap-1761692841.236821/root. INFO: reusing tmpfs at /var/lib/mock/fedora-41-x86_64-bootstrap-1761692841.236821/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-1761692841.236821/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.20.1-1.fc41.x86_64 rpm-sequoia-1.7.0-5.fc41.x86_64 dnf5-5.2.16.0-1.fc41.x86_64 dnf5-plugins-5.2.16.0-1.fc41.x86_64 Finish: chroot init Start: build phase for python-biopython-1.86-1.fc41.src.rpm Start: build setup for python-biopython-1.86-1.fc41.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1761609600 Wrote: /builddir/build/SRPMS/python-biopython-1.86-1.fc41.src.rpm Updating and loading repositories: Copr repository 100% | 45.3 KiB/s | 1.5 KiB | 00m00s fedora 100% | 277.2 KiB/s | 31.9 KiB | 00m00s updates 100% | 388.0 KiB/s | 29.5 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: gcc x86_64 14.3.1-4.fc41 updates 104.3 MiB python3-devel x86_64 3.13.9-1.fc41 updates 1.8 MiB Installing dependencies: annobin-docs noarch 12.69-1.fc41 fedora 97.7 KiB annobin-plugin-gcc x86_64 12.69-1.fc41 fedora 985.0 KiB cpp x86_64 14.3.1-4.fc41 updates 35.0 MiB expat x86_64 2.7.2-1.fc41 updates 306.8 KiB gcc-plugin-annobin x86_64 14.3.1-4.fc41 updates 61.1 KiB glibc-devel x86_64 2.40-28.fc41 updates 2.3 MiB kernel-headers x86_64 6.17.4-100.fc41 updates 6.7 MiB libb2 x86_64 0.98.1-12.fc41 fedora 42.2 KiB libmpc x86_64 1.3.1-6.fc41 fedora 164.7 KiB libxcrypt-devel x86_64 4.4.38-7.fc41 updates 30.8 KiB make x86_64 1:4.4.1-8.fc41 fedora 1.8 MiB mpdecimal x86_64 2.5.1-16.fc41 fedora 204.9 KiB pyproject-rpm-macros noarch 1.18.4-1.fc41 updates 114.9 KiB python-pip-wheel noarch 24.2-3.fc41 updates 1.2 MiB python-rpm-macros noarch 3.13-5.fc41 updates 22.1 KiB python3 x86_64 3.13.9-1.fc41 updates 32.8 KiB python3-libs x86_64 3.13.9-1.fc41 updates 40.6 MiB python3-packaging noarch 25.0-1.fc41 copr_base 536.9 KiB python3-rpm-generators noarch 14-11.fc41 fedora 81.7 KiB python3-rpm-macros noarch 3.13-5.fc41 updates 6.4 KiB tzdata noarch 2025b-1.fc41 updates 1.6 MiB Transaction Summary: Installing: 23 packages Total size of inbound packages is 65 MiB. Need to download 65 MiB. After this operation, 198 MiB extra will be used (install 198 MiB, remove 0 B). [ 1/23] python3-devel-0:3.13.9-1.fc41.x 100% | 2.7 MiB/s | 407.0 KiB | 00m00s [ 2/23] libmpc-0:1.3.1-6.fc41.x86_64 100% | 281.1 KiB/s | 71.1 KiB | 00m00s [ 3/23] make-1:4.4.1-8.fc41.x86_64 100% | 1.1 MiB/s | 586.1 KiB | 00m01s [ 4/23] gcc-0:14.3.1-4.fc41.x86_64 100% | 36.7 MiB/s | 37.0 MiB | 00m01s [ 5/23] libb2-0:0.98.1-12.fc41.x86_64 100% | 435.2 KiB/s | 25.7 KiB | 00m00s [ 6/23] python3-libs-0:3.13.9-1.fc41.x8 100% | 22.6 MiB/s | 9.1 MiB | 00m00s [ 7/23] expat-0:2.7.2-1.fc41.x86_64 100% | 4.5 MiB/s | 119.3 KiB | 00m00s [ 8/23] cpp-0:14.3.1-4.fc41.x86_64 100% | 13.2 MiB/s | 12.0 MiB | 00m01s [ 9/23] python-pip-wheel-0:24.2-3.fc41. 100% | 25.0 MiB/s | 1.2 MiB | 00m00s [10/23] mpdecimal-0:2.5.1-16.fc41.x86_6 100% | 966.9 KiB/s | 89.0 KiB | 00m00s [11/23] python3-0:3.13.9-1.fc41.x86_64 100% | 1.3 MiB/s | 30.9 KiB | 00m00s [12/23] glibc-devel-0:2.40-28.fc41.x86_ 100% | 18.1 MiB/s | 593.6 KiB | 00m00s [13/23] tzdata-0:2025b-1.fc41.noarch 100% | 12.9 MiB/s | 713.9 KiB | 00m00s [14/23] libxcrypt-devel-0:4.4.38-7.fc41 100% | 1.2 MiB/s | 29.4 KiB | 00m00s [15/23] kernel-headers-0:6.17.4-100.fc4 100% | 31.4 MiB/s | 1.7 MiB | 00m00s [16/23] gcc-plugin-annobin-0:14.3.1-4.f 100% | 3.0 MiB/s | 67.6 KiB | 00m00s [17/23] pyproject-rpm-macros-0:1.18.4-1 100% | 1.8 MiB/s | 44.8 KiB | 00m00s [18/23] python-rpm-macros-0:3.13-5.fc41 100% | 712.0 KiB/s | 16.4 KiB | 00m00s [19/23] annobin-docs-0:12.69-1.fc41.noa 100% | 1.7 MiB/s | 91.8 KiB | 00m00s [20/23] python3-rpm-macros-0:3.13-5.fc4 100% | 484.9 KiB/s | 11.2 KiB | 00m00s [21/23] python3-packaging-0:25.0-1.fc41 100% | 2.6 MiB/s | 138.4 KiB | 00m00s [22/23] annobin-plugin-gcc-0:12.69-1.fc 100% | 4.0 MiB/s | 971.0 KiB | 00m00s [23/23] python3-rpm-generators-0:14-11. 100% | 152.6 KiB/s | 29.3 KiB | 00m00s -------------------------------------------------------------------------------- [23/23] Total 100% | 43.6 MiB/s | 64.9 MiB | 00m01s Running transaction [ 1/25] Verify package files 100% | 108.0 B/s | 23.0 B | 00m00s [ 2/25] Prepare transaction 100% | 377.0 B/s | 23.0 B | 00m00s [ 3/25] Installing python-rpm-macros-0: 100% | 22.3 MiB/s | 22.8 KiB | 00m00s [ 4/25] Installing python3-rpm-macros-0 100% | 0.0 B/s | 6.7 KiB | 00m00s [ 5/25] Installing libmpc-0:1.3.1-6.fc4 100% | 81.1 MiB/s | 166.2 KiB | 00m00s [ 6/25] Installing cpp-0:14.3.1-4.fc41. 100% | 277.7 MiB/s | 35.0 MiB | 00m00s [ 7/25] Installing pyproject-rpm-macros 100% | 57.1 MiB/s | 116.8 KiB | 00m00s [ 8/25] Installing annobin-docs-0:12.69 100% | 32.2 MiB/s | 98.8 KiB | 00m00s [ 9/25] Installing kernel-headers-0:6.1 100% | 109.1 MiB/s | 6.9 MiB | 00m00s [10/25] Installing libxcrypt-devel-0:4. 100% | 10.8 MiB/s | 33.1 KiB | 00m00s [11/25] Installing glibc-devel-0:2.40-2 100% | 72.6 MiB/s | 2.3 MiB | 00m00s [12/25] Installing tzdata-0:2025b-1.fc4 100% | 24.9 MiB/s | 1.9 MiB | 00m00s [13/25] Installing python-pip-wheel-0:2 100% | 413.9 MiB/s | 1.2 MiB | 00m00s [14/25] Installing expat-0:2.7.2-1.fc41 100% | 150.8 MiB/s | 308.9 KiB | 00m00s [15/25] Installing mpdecimal-0:2.5.1-16 100% | 100.6 MiB/s | 206.0 KiB | 00m00s [16/25] Installing libb2-0:0.98.1-12.fc 100% | 7.0 MiB/s | 43.3 KiB | 00m00s [17/25] Installing python3-libs-0:3.13. 100% | 198.0 MiB/s | 41.0 MiB | 00m00s [18/25] Installing python3-0:3.13.9-1.f 100% | 33.8 MiB/s | 34.6 KiB | 00m00s [19/25] Installing python3-packaging-0: 100% | 107.1 MiB/s | 548.2 KiB | 00m00s [20/25] Installing python3-rpm-generato 100% | 81.0 MiB/s | 82.9 KiB | 00m00s [21/25] Installing make-1:4.4.1-8.fc41. 100% | 163.7 MiB/s | 1.8 MiB | 00m00s [22/25] Installing gcc-0:14.3.1-4.fc41. 100% | 289.1 MiB/s | 104.4 MiB | 00m00s [23/25] Installing annobin-plugin-gcc-0 100% | 28.3 MiB/s | 986.7 KiB | 00m00s [24/25] Installing gcc-plugin-annobin-0 100% | 1.7 MiB/s | 62.6 KiB | 00m00s [25/25] Installing python3-devel-0:3.13 100% | 9.8 MiB/s | 1.8 MiB | 00m00s Warning: skipped OpenPGP checks for 1 package from repository: copr_base Complete! Finish: build setup for python-biopython-1.86-1.fc41.src.rpm Start: rpmbuild python-biopython-1.86-1.fc41.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1761609600 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.2hF3ji Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.ir9U6C + umask 022 + cd /builddir/build/BUILD/python-biopython-1.86-build + cd /builddir/build/BUILD/python-biopython-1.86-build + rm -rf biopython-1.86 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/biopython-1.86.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd biopython-1.86 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.8eq3eZ + umask 022 + cd /builddir/build/BUILD/python-biopython-1.86-build + cd biopython-1.86 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir + RPM_TOXENV=py313 + FEDORA=41 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-biopython-1.86-build/pyproject-wheeldir --output /builddir/build/BUILD/python-biopython-1.86-build/python-biopython-1.86-1.fc41.x86_64-pyproject-buildrequires Handling setuptools >= 40.8 from default build backend Requirement not satisfied: setuptools >= 40.8 Exiting dependency generation pass: build backend + cat /builddir/build/BUILD/python-biopython-1.86-build/python-biopython-1.86-1.fc41.x86_64-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-biopython-1.86-1.fc41.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: Copr repository 100% | 49.7 KiB/s | 1.5 KiB | 00m00s fedora 100% | 328.6 KiB/s | 31.9 KiB | 00m00s updates 100% | 483.4 KiB/s | 29.5 KiB | 00m00s Repositories loaded. Package "gcc-14.3.1-4.fc41.x86_64" is already installed. Package "pyproject-rpm-macros-1.18.4-1.fc41.noarch" is already installed. Package "python3-devel-3.13.9-1.fc41.x86_64" is already installed. Package "python3-packaging-25.0-1.fc41.noarch" is already installed. Package Arch Version Repository Size Installing: python3-pip noarch 24.2-3.fc41 updates 11.4 MiB python3-setuptools noarch 69.2.0-10.fc41 updates 7.2 MiB Transaction Summary: Installing: 2 packages Total size of inbound packages is 4 MiB. Need to download 4 MiB. After this operation, 19 MiB extra will be used (install 19 MiB, remove 0 B). [1/2] python3-pip-0:24.2-3.fc41.noarch 100% | 11.4 MiB/s | 2.7 MiB | 00m00s [2/2] python3-setuptools-0:69.2.0-10.fc 100% | 6.5 MiB/s | 1.6 MiB | 00m00s -------------------------------------------------------------------------------- [2/2] Total 100% | 17.7 MiB/s | 4.3 MiB | 00m00s Running transaction [1/4] Verify package files 100% | 142.0 B/s | 2.0 B | 00m00s [2/4] Prepare transaction 100% | 71.0 B/s | 2.0 B | 00m00s [3/4] Installing python3-setuptools-0:6 100% | 120.1 MiB/s | 7.3 MiB | 00m00s [4/4] Installing python3-pip-0:24.2-3.f 100% | 105.1 MiB/s | 11.7 MiB | 00m00s Complete! Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1761609600 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.CLmuJd + umask 022 + cd /builddir/build/BUILD/python-biopython-1.86-build + cd biopython-1.86 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir + RPM_TOXENV=py313 + FEDORA=41 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-biopython-1.86-build/pyproject-wheeldir --output /builddir/build/BUILD/python-biopython-1.86-build/python-biopython-1.86-1.fc41.x86_64-pyproject-buildrequires Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 69.2.0) running egg_info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Doc/_build/' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file 'biopython.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement not satisfied: wheel Exiting dependency generation pass: get_requires_for_build_wheel + cat /builddir/build/BUILD/python-biopython-1.86-build/python-biopython-1.86-1.fc41.x86_64-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-biopython-1.86-1.fc41.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: Copr repository 100% | 48.1 KiB/s | 1.5 KiB | 00m00s fedora 100% | 346.5 KiB/s | 31.9 KiB | 00m00s updates 100% | 483.4 KiB/s | 29.5 KiB | 00m00s Repositories loaded. Package "gcc-14.3.1-4.fc41.x86_64" is already installed. Package "pyproject-rpm-macros-1.18.4-1.fc41.noarch" is already installed. Package "python3-devel-3.13.9-1.fc41.x86_64" is already installed. Package "python3-packaging-25.0-1.fc41.noarch" is already installed. Package "python3-pip-24.2-3.fc41.noarch" is already installed. Package "python3-setuptools-69.2.0-10.fc41.noarch" is already installed. Package Arch Version Repository Size Installing: python3-wheel noarch 1:0.43.0-4.fc41 fedora 516.1 KiB Transaction Summary: Installing: 1 package Total size of inbound packages is 166 KiB. Need to download 166 KiB. After this operation, 516 KiB extra will be used (install 516 KiB, remove 0 B). [1/1] python3-wheel-1:0.43.0-4.fc41.noa 100% | 457.9 KiB/s | 165.8 KiB | 00m00s -------------------------------------------------------------------------------- [1/1] Total 100% | 455.4 KiB/s | 165.8 KiB | 00m00s Running transaction [1/3] Verify package files 100% | 0.0 B/s | 1.0 B | 00m00s [2/3] Prepare transaction 100% | 142.0 B/s | 1.0 B | 00m00s [3/3] Installing python3-wheel-1:0.43.0 100% | 26.1 MiB/s | 535.1 KiB | 00m00s Complete! Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1761609600 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.PTUTn9 + umask 022 + cd /builddir/build/BUILD/python-biopython-1.86-build + cd biopython-1.86 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir + RPM_TOXENV=py313 + FEDORA=41 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-biopython-1.86-build/pyproject-wheeldir --output /builddir/build/BUILD/python-biopython-1.86-build/python-biopython-1.86-1.fc41.x86_64-pyproject-buildrequires Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 69.2.0) running egg_info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Doc/_build/' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file 'biopython.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.43.0) running dist_info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Doc/_build/' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file 'biopython.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-biopython-1.86-build/biopython-1.86/biopython-1.86.dist-info' Handling numpy from hook generated metadata: Requires-Dist (biopython) Requirement not satisfied: numpy + cat /builddir/build/BUILD/python-biopython-1.86-build/python-biopython-1.86-1.fc41.x86_64-pyproject-buildrequires + rm -rfv biopython-1.86.dist-info/ removed 'biopython-1.86.dist-info/LICENSE.rst' removed 'biopython-1.86.dist-info/LICENSE' removed 'biopython-1.86.dist-info/METADATA' removed 'biopython-1.86.dist-info/top_level.txt' removed directory 'biopython-1.86.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-biopython-1.86-1.fc41.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: Copr repository 100% | 28.5 KiB/s | 1.5 KiB | 00m00s fedora 100% | 272.5 KiB/s | 31.9 KiB | 00m00s updates 100% | 355.3 KiB/s | 29.5 KiB | 00m00s Repositories loaded. Package "gcc-14.3.1-4.fc41.x86_64" is already installed. Package "pyproject-rpm-macros-1.18.4-1.fc41.noarch" is already installed. Package "python3-devel-3.13.9-1.fc41.x86_64" is already installed. Package "python3-packaging-25.0-1.fc41.noarch" is already installed. Package "python3-pip-24.2-3.fc41.noarch" is already installed. Package "python3-setuptools-69.2.0-10.fc41.noarch" is already installed. Package "python3-wheel-1:0.43.0-4.fc41.noarch" is already installed. Package Arch Version Repository Size Installing: python3-numpy x86_64 1:1.26.4-8.fc41 fedora 43.8 MiB Installing dependencies: flexiblas x86_64 3.4.5-1.fc41 updates 50.4 KiB flexiblas-netlib x86_64 3.4.5-1.fc41 updates 10.9 MiB flexiblas-openblas-openmp x86_64 3.4.5-1.fc41 updates 43.3 KiB libgfortran x86_64 14.3.1-4.fc41 updates 3.0 MiB libquadmath x86_64 14.3.1-4.fc41 updates 325.9 KiB openblas x86_64 0.3.26-5.fc41 fedora 96.0 KiB openblas-openmp x86_64 0.3.26-5.fc41 fedora 39.4 MiB Transaction Summary: Installing: 8 packages Total size of inbound packages is 17 MiB. Need to download 17 MiB. After this operation, 98 MiB extra will be used (install 98 MiB, remove 0 B). [1/8] flexiblas-0:3.4.5-1.fc41.x86_64 100% | 167.1 KiB/s | 26.2 KiB | 00m00s [2/8] flexiblas-openblas-openmp-0:3.4.5 100% | 361.2 KiB/s | 17.3 KiB | 00m00s [3/8] python3-numpy-1:1.26.4-8.fc41.x86 100% | 13.0 MiB/s | 7.6 MiB | 00m01s [4/8] flexiblas-netlib-0:3.4.5-1.fc41.x 100% | 5.4 MiB/s | 3.3 MiB | 00m01s [5/8] openblas-0:0.3.26-5.fc41.x86_64 100% | 703.8 KiB/s | 38.7 KiB | 00m00s [6/8] libquadmath-0:14.3.1-4.fc41.x86_6 100% | 4.6 MiB/s | 214.8 KiB | 00m00s [7/8] openblas-openmp-0:0.3.26-5.fc41.x 100% | 9.1 MiB/s | 5.1 MiB | 00m01s [8/8] libgfortran-0:14.3.1-4.fc41.x86_6 100% | 2.4 MiB/s | 952.3 KiB | 00m00s -------------------------------------------------------------------------------- [8/8] Total 100% | 17.5 MiB/s | 17.2 MiB | 00m01s Running transaction [ 1/10] Verify package files 100% | 145.0 B/s | 8.0 B | 00m00s [ 2/10] Prepare transaction 100% | 228.0 B/s | 8.0 B | 00m00s [ 3/10] Installing libgfortran-0:14.3.1 100% | 276.4 MiB/s | 3.0 MiB | 00m00s [ 4/10] Installing libquadmath-0:14.3.1 100% | 159.7 MiB/s | 327.1 KiB | 00m00s [ 5/10] Installing openblas-0:0.3.26-5. 100% | 95.5 MiB/s | 97.8 KiB | 00m00s [ 6/10] Installing openblas-openmp-0:0. 100% | 427.9 MiB/s | 39.4 MiB | 00m00s [ 7/10] Installing flexiblas-0:3.4.5-1. 100% | 50.4 MiB/s | 51.6 KiB | 00m00s [ 8/10] Installing flexiblas-openblas-o 100% | 43.1 MiB/s | 44.1 KiB | 00m00s [ 9/10] Installing flexiblas-netlib-0:3 100% | 278.3 MiB/s | 10.9 MiB | 00m00s [10/10] Installing python3-numpy-1:1.26 100% | 174.4 MiB/s | 44.1 MiB | 00m00s Complete! Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1761609600 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.TFSdp2 + umask 022 + cd /builddir/build/BUILD/python-biopython-1.86-build + cd biopython-1.86 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir + RPM_TOXENV=py313 + FEDORA=41 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-biopython-1.86-build/pyproject-wheeldir --output /builddir/build/BUILD/python-biopython-1.86-build/python-biopython-1.86-1.fc41.x86_64-pyproject-buildrequires Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 69.2.0) running egg_info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Doc/_build/' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file 'biopython.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.43.0) running dist_info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Doc/_build/' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file 'biopython.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-biopython-1.86-build/biopython-1.86/biopython-1.86.dist-info' Handling numpy from hook generated metadata: Requires-Dist (biopython) Requirement satisfied: numpy (installed: numpy 1.26.4) + cat /builddir/build/BUILD/python-biopython-1.86-build/python-biopython-1.86-1.fc41.x86_64-pyproject-buildrequires + rm -rfv biopython-1.86.dist-info/ removed 'biopython-1.86.dist-info/LICENSE.rst' removed 'biopython-1.86.dist-info/LICENSE' removed 'biopython-1.86.dist-info/METADATA' removed 'biopython-1.86.dist-info/top_level.txt' removed directory 'biopython-1.86.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-biopython-1.86-1.fc41.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: Copr repository 100% | 49.7 KiB/s | 1.5 KiB | 00m00s fedora 100% | 339.1 KiB/s | 31.9 KiB | 00m00s updates 100% | 446.8 KiB/s | 29.5 KiB | 00m00s Repositories loaded. Package "gcc-14.3.1-4.fc41.x86_64" is already installed. Package "pyproject-rpm-macros-1.18.4-1.fc41.noarch" is already installed. Package "python3-devel-3.13.9-1.fc41.x86_64" is already installed. Package "python3-numpy-1:1.26.4-8.fc41.x86_64" is already installed. Package "python3-packaging-25.0-1.fc41.noarch" is already installed. Package "python3-pip-24.2-3.fc41.noarch" is already installed. Package "python3-setuptools-69.2.0-10.fc41.noarch" is already installed. Package "python3-wheel-1:0.43.0-4.fc41.noarch" is already installed. Nothing to do. Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1761609600 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.6PkmYT + umask 022 + cd /builddir/build/BUILD/python-biopython-1.86-build + cd biopython-1.86 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir + RPM_TOXENV=py313 + FEDORA=41 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-biopython-1.86-build/pyproject-wheeldir --output /builddir/build/BUILD/python-biopython-1.86-build/python-biopython-1.86-1.fc41.x86_64-pyproject-buildrequires Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 69.2.0) running egg_info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Doc/_build/' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file 'biopython.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.43.0) running dist_info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Doc/_build/' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file 'biopython.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-biopython-1.86-build/biopython-1.86/biopython-1.86.dist-info' Handling numpy from hook generated metadata: Requires-Dist (biopython) Requirement satisfied: numpy (installed: numpy 1.26.4) + cat /builddir/build/BUILD/python-biopython-1.86-build/python-biopython-1.86-1.fc41.x86_64-pyproject-buildrequires + rm -rfv biopython-1.86.dist-info/ removed 'biopython-1.86.dist-info/LICENSE.rst' removed 'biopython-1.86.dist-info/LICENSE' removed 'biopython-1.86.dist-info/METADATA' removed 'biopython-1.86.dist-info/top_level.txt' removed directory 'biopython-1.86.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.DWeUxe + umask 022 + cd /builddir/build/BUILD/python-biopython-1.86-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd biopython-1.86 + mkdir -p /builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/python-biopython-1.86-build/pyproject-wheeldir Processing /builddir/build/BUILD/python-biopython-1.86-build/biopython-1.86 Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) running dist_info creating /builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir/pip-modern-metadata-mt7a0u61/biopython.egg-info writing /builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir/pip-modern-metadata-mt7a0u61/biopython.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir/pip-modern-metadata-mt7a0u61/biopython.egg-info/dependency_links.txt writing requirements to /builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir/pip-modern-metadata-mt7a0u61/biopython.egg-info/requires.txt writing top-level names to /builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir/pip-modern-metadata-mt7a0u61/biopython.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir/pip-modern-metadata-mt7a0u61/biopython.egg-info/SOURCES.txt' reading manifest file '/builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir/pip-modern-metadata-mt7a0u61/biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Doc/_build/' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file '/builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir/pip-modern-metadata-mt7a0u61/biopython.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir/pip-modern-metadata-mt7a0u61/biopython-1.86.dist-info' Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: biopython Building wheel for biopython (pyproject.toml): started Running command Building wheel for biopython (pyproject.toml) running bdist_wheel running build running build_py creating build creating build/lib.linux-x86_64-cpython-313 creating build/lib.linux-x86_64-cpython-313/Bio copying Bio/pairwise2.py -> build/lib.linux-x86_64-cpython-313/Bio copying Bio/bgzf.py -> build/lib.linux-x86_64-cpython-313/Bio copying Bio/_utils.py -> build/lib.linux-x86_64-cpython-313/Bio copying Bio/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio copying Bio/SeqRecord.py -> build/lib.linux-x86_64-cpython-313/Bio copying Bio/SeqFeature.py -> build/lib.linux-x86_64-cpython-313/Bio copying Bio/Seq.py -> build/lib.linux-x86_64-cpython-313/Bio copying Bio/File.py -> build/lib.linux-x86_64-cpython-313/Bio creating build/lib.linux-x86_64-cpython-313/Bio/Affy copying Bio/Affy/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/Affy copying Bio/Affy/CelFile.py -> build/lib.linux-x86_64-cpython-313/Bio/Affy creating build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/tabular.py -> build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/stockholm.py -> build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/sam.py -> build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/psl.py -> build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/phylip.py -> build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/nexus.py -> build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/msf.py -> build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/mauve.py -> build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/maf.py -> build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/interfaces.py -> build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/hhr.py -> build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/fasta.py -> build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/exonerate.py -> build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/emboss.py -> build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/clustal.py -> build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/chain.py -> build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/bigpsl.py -> build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/bigmaf.py -> build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/bigbed.py -> build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/bed.py -> build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/analysis.py -> build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/a2m.py -> build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/AlignInfo.py -> build/lib.linux-x86_64-cpython-313/Bio/Align creating build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices copying Bio/Align/substitution_matrices/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices creating build/lib.linux-x86_64-cpython-313/Bio/AlignIO copying Bio/AlignIO/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/AlignIO copying Bio/AlignIO/StockholmIO.py -> build/lib.linux-x86_64-cpython-313/Bio/AlignIO copying Bio/AlignIO/PhylipIO.py -> build/lib.linux-x86_64-cpython-313/Bio/AlignIO copying Bio/AlignIO/NexusIO.py -> build/lib.linux-x86_64-cpython-313/Bio/AlignIO copying Bio/AlignIO/MsfIO.py -> build/lib.linux-x86_64-cpython-313/Bio/AlignIO copying Bio/AlignIO/MauveIO.py -> build/lib.linux-x86_64-cpython-313/Bio/AlignIO copying Bio/AlignIO/MafIO.py -> build/lib.linux-x86_64-cpython-313/Bio/AlignIO copying Bio/AlignIO/Interfaces.py -> build/lib.linux-x86_64-cpython-313/Bio/AlignIO copying Bio/AlignIO/FastaIO.py -> build/lib.linux-x86_64-cpython-313/Bio/AlignIO copying Bio/AlignIO/EmbossIO.py -> build/lib.linux-x86_64-cpython-313/Bio/AlignIO copying Bio/AlignIO/ClustalIO.py -> build/lib.linux-x86_64-cpython-313/Bio/AlignIO creating build/lib.linux-x86_64-cpython-313/Bio/Alphabet copying Bio/Alphabet/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/Alphabet creating build/lib.linux-x86_64-cpython-313/Bio/Blast copying Bio/Blast/_writers.py -> build/lib.linux-x86_64-cpython-313/Bio/Blast copying Bio/Blast/_parser.py -> build/lib.linux-x86_64-cpython-313/Bio/Blast copying Bio/Blast/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/Blast copying Bio/Blast/NCBIXML.py -> build/lib.linux-x86_64-cpython-313/Bio/Blast copying Bio/Blast/NCBIWWW.py -> build/lib.linux-x86_64-cpython-313/Bio/Blast creating build/lib.linux-x86_64-cpython-313/Bio/CAPS copying Bio/CAPS/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/CAPS creating build/lib.linux-x86_64-cpython-313/Bio/Cluster copying Bio/Cluster/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/Cluster creating build/lib.linux-x86_64-cpython-313/Bio/codonalign copying Bio/codonalign/codonseq.py -> build/lib.linux-x86_64-cpython-313/Bio/codonalign copying Bio/codonalign/codonalignment.py -> build/lib.linux-x86_64-cpython-313/Bio/codonalign copying Bio/codonalign/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/codonalign creating build/lib.linux-x86_64-cpython-313/Bio/Compass copying Bio/Compass/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/Compass creating build/lib.linux-x86_64-cpython-313/Bio/Data copying Bio/Data/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/Data copying Bio/Data/PDBData.py -> build/lib.linux-x86_64-cpython-313/Bio/Data copying Bio/Data/IUPACData.py -> build/lib.linux-x86_64-cpython-313/Bio/Data copying Bio/Data/CodonTable.py -> build/lib.linux-x86_64-cpython-313/Bio/Data creating build/lib.linux-x86_64-cpython-313/Bio/Emboss copying Bio/Emboss/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/Emboss copying Bio/Emboss/PrimerSearch.py -> build/lib.linux-x86_64-cpython-313/Bio/Emboss copying Bio/Emboss/Primer3.py -> build/lib.linux-x86_64-cpython-313/Bio/Emboss creating build/lib.linux-x86_64-cpython-313/Bio/Entrez copying Bio/Entrez/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/Entrez copying Bio/Entrez/Parser.py -> build/lib.linux-x86_64-cpython-313/Bio/Entrez creating build/lib.linux-x86_64-cpython-313/Bio/ExPASy copying Bio/ExPASy/cellosaurus.py -> build/lib.linux-x86_64-cpython-313/Bio/ExPASy copying Bio/ExPASy/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/ExPASy copying Bio/ExPASy/ScanProsite.py -> build/lib.linux-x86_64-cpython-313/Bio/ExPASy copying Bio/ExPASy/Prosite.py -> build/lib.linux-x86_64-cpython-313/Bio/ExPASy copying Bio/ExPASy/Prodoc.py -> build/lib.linux-x86_64-cpython-313/Bio/ExPASy copying Bio/ExPASy/Enzyme.py -> build/lib.linux-x86_64-cpython-313/Bio/ExPASy creating build/lib.linux-x86_64-cpython-313/Bio/GenBank copying Bio/GenBank/utils.py -> build/lib.linux-x86_64-cpython-313/Bio/GenBank copying Bio/GenBank/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/GenBank copying Bio/GenBank/Scanner.py -> build/lib.linux-x86_64-cpython-313/Bio/GenBank copying Bio/GenBank/Record.py -> build/lib.linux-x86_64-cpython-313/Bio/GenBank creating build/lib.linux-x86_64-cpython-313/Bio/Geo copying Bio/Geo/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/Geo copying Bio/Geo/Record.py -> build/lib.linux-x86_64-cpython-313/Bio/Geo creating build/lib.linux-x86_64-cpython-313/Bio/Graphics copying Bio/Graphics/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/Graphics copying Bio/Graphics/KGML_vis.py -> build/lib.linux-x86_64-cpython-313/Bio/Graphics copying Bio/Graphics/Distribution.py -> build/lib.linux-x86_64-cpython-313/Bio/Graphics copying Bio/Graphics/DisplayRepresentation.py -> build/lib.linux-x86_64-cpython-313/Bio/Graphics copying Bio/Graphics/Comparative.py -> build/lib.linux-x86_64-cpython-313/Bio/Graphics copying Bio/Graphics/ColorSpiral.py -> build/lib.linux-x86_64-cpython-313/Bio/Graphics copying Bio/Graphics/BasicChromosome.py -> build/lib.linux-x86_64-cpython-313/Bio/Graphics creating build/lib.linux-x86_64-cpython-313/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Track.py -> build/lib.linux-x86_64-cpython-313/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/lib.linux-x86_64-cpython-313/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/lib.linux-x86_64-cpython-313/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Graph.py -> build/lib.linux-x86_64-cpython-313/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/lib.linux-x86_64-cpython-313/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Feature.py -> build/lib.linux-x86_64-cpython-313/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Diagram.py -> build/lib.linux-x86_64-cpython-313/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/lib.linux-x86_64-cpython-313/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Colors.py -> build/lib.linux-x86_64-cpython-313/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/lib.linux-x86_64-cpython-313/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/lib.linux-x86_64-cpython-313/Bio/Graphics/GenomeDiagram creating build/lib.linux-x86_64-cpython-313/Bio/HMM copying Bio/HMM/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/HMM creating build/lib.linux-x86_64-cpython-313/Bio/KEGG copying Bio/KEGG/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/KEGG copying Bio/KEGG/REST.py -> build/lib.linux-x86_64-cpython-313/Bio/KEGG creating build/lib.linux-x86_64-cpython-313/Bio/KEGG/Compound copying Bio/KEGG/Compound/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/KEGG/Compound creating build/lib.linux-x86_64-cpython-313/Bio/KEGG/Enzyme copying Bio/KEGG/Enzyme/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/KEGG/Enzyme creating build/lib.linux-x86_64-cpython-313/Bio/KEGG/Gene copying Bio/KEGG/Gene/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/KEGG/Gene creating build/lib.linux-x86_64-cpython-313/Bio/KEGG/Map copying Bio/KEGG/Map/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/KEGG/Map creating build/lib.linux-x86_64-cpython-313/Bio/PDB creating build/lib.linux-x86_64-cpython-313/Bio/PDB/mmtf copying Bio/PDB/mmtf/mmtfio.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB/mmtf copying Bio/PDB/mmtf/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB/mmtf copying Bio/PDB/mmtf/DefaultParser.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB/mmtf creating build/lib.linux-x86_64-cpython-313/Bio/KEGG/KGML copying Bio/KEGG/KGML/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_pathway.py -> build/lib.linux-x86_64-cpython-313/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_parser.py -> build/lib.linux-x86_64-cpython-313/Bio/KEGG/KGML creating build/lib.linux-x86_64-cpython-313/Bio/Medline copying Bio/Medline/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/Medline creating build/lib.linux-x86_64-cpython-313/Bio/motifs copying Bio/motifs/xms.py -> build/lib.linux-x86_64-cpython-313/Bio/motifs copying Bio/motifs/transfac.py -> build/lib.linux-x86_64-cpython-313/Bio/motifs copying Bio/motifs/thresholds.py -> build/lib.linux-x86_64-cpython-313/Bio/motifs copying Bio/motifs/pfm.py -> build/lib.linux-x86_64-cpython-313/Bio/motifs copying Bio/motifs/minimal.py -> build/lib.linux-x86_64-cpython-313/Bio/motifs copying Bio/motifs/meme.py -> build/lib.linux-x86_64-cpython-313/Bio/motifs copying Bio/motifs/matrix.py -> build/lib.linux-x86_64-cpython-313/Bio/motifs copying Bio/motifs/mast.py -> build/lib.linux-x86_64-cpython-313/Bio/motifs copying Bio/motifs/clusterbuster.py -> build/lib.linux-x86_64-cpython-313/Bio/motifs copying Bio/motifs/alignace.py -> build/lib.linux-x86_64-cpython-313/Bio/motifs copying Bio/motifs/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/motifs creating build/lib.linux-x86_64-cpython-313/Bio/motifs/jaspar copying Bio/motifs/jaspar/db.py -> build/lib.linux-x86_64-cpython-313/Bio/motifs/jaspar copying Bio/motifs/jaspar/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/motifs/jaspar creating build/lib.linux-x86_64-cpython-313/Bio/Nexus copying Bio/Nexus/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/Nexus copying Bio/Nexus/Trees.py -> build/lib.linux-x86_64-cpython-313/Bio/Nexus copying Bio/Nexus/StandardData.py -> build/lib.linux-x86_64-cpython-313/Bio/Nexus copying Bio/Nexus/Nodes.py -> build/lib.linux-x86_64-cpython-313/Bio/Nexus copying Bio/Nexus/Nexus.py -> build/lib.linux-x86_64-cpython-313/Bio/Nexus creating build/lib.linux-x86_64-cpython-313/Bio/NMR copying Bio/NMR/xpktools.py -> build/lib.linux-x86_64-cpython-313/Bio/NMR copying Bio/NMR/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/NMR copying Bio/NMR/NOEtools.py -> build/lib.linux-x86_64-cpython-313/Bio/NMR creating build/lib.linux-x86_64-cpython-313/Bio/Pathway copying Bio/Pathway/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/Pathway creating build/lib.linux-x86_64-cpython-313/Bio/Pathway/Rep copying Bio/Pathway/Rep/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/Pathway/Rep copying Bio/Pathway/Rep/MultiGraph.py -> build/lib.linux-x86_64-cpython-313/Bio/Pathway/Rep copying Bio/Pathway/Rep/Graph.py -> build/lib.linux-x86_64-cpython-313/Bio/Pathway/Rep copying Bio/PDB/vectors.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/qcprot.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/parse_pdb_header.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/mmcifio.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/internal_coords.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/ic_rebuild.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/ic_data.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/cealign.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/binary_cif.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/alphafold_db.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/Superimposer.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/StructureBuilder.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/StructureAlignment.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/Structure.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/Selection.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/SCADIO.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/SASA.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/ResidueDepth.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/Residue.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/Polypeptide.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/PSEA.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/PICIO.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/PDBParser.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/PDBMLParser.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/PDBList.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/PDBIO.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/PDBExceptions.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/NeighborSearch.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/NACCESS.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/Model.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/MMCIFParser.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/MMCIF2Dict.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/HSExposure.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/FragmentMapper.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/Entity.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/Dice.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/DSSP.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/Chain.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/Atom.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/AbstractPropertyMap.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB creating build/lib.linux-x86_64-cpython-313/Bio/phenotype copying Bio/phenotype/pm_fitting.py -> build/lib.linux-x86_64-cpython-313/Bio/phenotype copying Bio/phenotype/phen_micro.py -> build/lib.linux-x86_64-cpython-313/Bio/phenotype copying Bio/phenotype/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/phenotype creating build/lib.linux-x86_64-cpython-313/Bio/PopGen copying Bio/PopGen/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/PopGen creating build/lib.linux-x86_64-cpython-313/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/LargeFileParser.py -> build/lib.linux-x86_64-cpython-313/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/FileParser.py -> build/lib.linux-x86_64-cpython-313/Bio/PopGen/GenePop creating build/lib.linux-x86_64-cpython-313/Bio/Restriction copying Bio/Restriction/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/Restriction copying Bio/Restriction/Restriction_Dictionary.py -> build/lib.linux-x86_64-cpython-313/Bio/Restriction copying Bio/Restriction/Restriction.py -> build/lib.linux-x86_64-cpython-313/Bio/Restriction copying Bio/Restriction/PrintFormat.py -> build/lib.linux-x86_64-cpython-313/Bio/Restriction creating build/lib.linux-x86_64-cpython-313/Bio/SCOP copying Bio/SCOP/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/SCOP copying Bio/SCOP/Residues.py -> build/lib.linux-x86_64-cpython-313/Bio/SCOP copying Bio/SCOP/Raf.py -> build/lib.linux-x86_64-cpython-313/Bio/SCOP copying Bio/SCOP/Hie.py -> build/lib.linux-x86_64-cpython-313/Bio/SCOP copying Bio/SCOP/Dom.py -> build/lib.linux-x86_64-cpython-313/Bio/SCOP copying Bio/SCOP/Des.py -> build/lib.linux-x86_64-cpython-313/Bio/SCOP copying Bio/SCOP/Cla.py -> build/lib.linux-x86_64-cpython-313/Bio/SCOP creating build/lib.linux-x86_64-cpython-313/Bio/SearchIO copying Bio/SearchIO/_utils.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO copying Bio/SearchIO/_index.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO copying Bio/SearchIO/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO copying Bio/SearchIO/FastaIO.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO copying Bio/SearchIO/BlatIO.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO creating build/lib.linux-x86_64-cpython-313/Bio/SearchIO/_model copying Bio/SearchIO/_model/query.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO/_model copying Bio/SearchIO/_model/hsp.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO/_model copying Bio/SearchIO/_model/hit.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO/_model copying Bio/SearchIO/_model/_base.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO/_model copying Bio/SearchIO/_model/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO/_model creating build/lib.linux-x86_64-cpython-313/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_xml.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_tab.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO/BlastIO creating build/lib.linux-x86_64-cpython-313/Bio/SearchIO/HHsuiteIO copying Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO/HHsuiteIO copying Bio/SearchIO/HHsuiteIO/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO/HHsuiteIO creating build/lib.linux-x86_64-cpython-313/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/_base.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO/HmmerIO creating build/lib.linux-x86_64-cpython-313/Bio/SearchIO/InfernalIO copying Bio/SearchIO/InfernalIO/infernal_text.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO/InfernalIO copying Bio/SearchIO/InfernalIO/infernal_tab.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO/InfernalIO copying Bio/SearchIO/InfernalIO/_base.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO/InfernalIO copying Bio/SearchIO/InfernalIO/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO/InfernalIO creating build/lib.linux-x86_64-cpython-313/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/_base.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO/ExonerateIO creating build/lib.linux-x86_64-cpython-313/Bio/SearchIO/InterproscanIO copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO/InterproscanIO copying Bio/SearchIO/InterproscanIO/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO/InterproscanIO creating build/lib.linux-x86_64-cpython-313/Bio/SeqIO copying Bio/SeqIO/_index.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqIO copying Bio/SeqIO/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqIO copying Bio/SeqIO/XdnaIO.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqIO copying Bio/SeqIO/UniprotIO.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqIO copying Bio/SeqIO/TwoBitIO.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqIO copying Bio/SeqIO/TabIO.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqIO copying Bio/SeqIO/SwissIO.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqIO copying Bio/SeqIO/SnapGeneIO.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqIO copying Bio/SeqIO/SffIO.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqIO copying Bio/SeqIO/SeqXmlIO.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqIO copying Bio/SeqIO/QualityIO.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqIO copying Bio/SeqIO/PirIO.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqIO copying Bio/SeqIO/PhdIO.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqIO copying Bio/SeqIO/PdbIO.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqIO copying Bio/SeqIO/NibIO.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqIO copying Bio/SeqIO/Interfaces.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqIO copying Bio/SeqIO/InsdcIO.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqIO copying Bio/SeqIO/IgIO.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqIO copying Bio/SeqIO/GfaIO.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqIO copying Bio/SeqIO/GckIO.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqIO copying Bio/SeqIO/FastaIO.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqIO copying Bio/SeqIO/AceIO.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqIO copying Bio/SeqIO/AbiIO.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqIO creating build/lib.linux-x86_64-cpython-313/Bio/SeqUtils copying Bio/SeqUtils/lcc.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqUtils copying Bio/SeqUtils/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqUtils copying Bio/SeqUtils/ProtParamData.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqUtils copying Bio/SeqUtils/ProtParam.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqUtils copying Bio/SeqUtils/MeltingTemp.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqUtils copying Bio/SeqUtils/IsoelectricPoint.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqUtils copying Bio/SeqUtils/CheckSum.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqUtils creating build/lib.linux-x86_64-cpython-313/Bio/Sequencing copying Bio/Sequencing/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/Sequencing copying Bio/Sequencing/Phd.py -> build/lib.linux-x86_64-cpython-313/Bio/Sequencing copying Bio/Sequencing/Ace.py -> build/lib.linux-x86_64-cpython-313/Bio/Sequencing creating build/lib.linux-x86_64-cpython-313/Bio/SVDSuperimposer copying Bio/SVDSuperimposer/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/SVDSuperimposer creating build/lib.linux-x86_64-cpython-313/Bio/SwissProt copying Bio/SwissProt/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/SwissProt copying Bio/SwissProt/KeyWList.py -> build/lib.linux-x86_64-cpython-313/Bio/SwissProt creating build/lib.linux-x86_64-cpython-313/Bio/TogoWS copying Bio/TogoWS/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/TogoWS creating build/lib.linux-x86_64-cpython-313/Bio/Phylo copying Bio/Phylo/_utils.py -> build/lib.linux-x86_64-cpython-313/Bio/Phylo copying Bio/Phylo/_io.py -> build/lib.linux-x86_64-cpython-313/Bio/Phylo copying Bio/Phylo/_cdao_owl.py -> build/lib.linux-x86_64-cpython-313/Bio/Phylo copying Bio/Phylo/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/Phylo copying Bio/Phylo/TreeConstruction.py -> build/lib.linux-x86_64-cpython-313/Bio/Phylo copying Bio/Phylo/PhyloXMLIO.py -> build/lib.linux-x86_64-cpython-313/Bio/Phylo copying Bio/Phylo/PhyloXML.py -> build/lib.linux-x86_64-cpython-313/Bio/Phylo copying Bio/Phylo/NexusIO.py -> build/lib.linux-x86_64-cpython-313/Bio/Phylo copying Bio/Phylo/NewickIO.py -> build/lib.linux-x86_64-cpython-313/Bio/Phylo copying Bio/Phylo/Newick.py -> build/lib.linux-x86_64-cpython-313/Bio/Phylo copying Bio/Phylo/NeXMLIO.py -> build/lib.linux-x86_64-cpython-313/Bio/Phylo copying Bio/Phylo/NeXML.py -> build/lib.linux-x86_64-cpython-313/Bio/Phylo copying Bio/Phylo/Consensus.py -> build/lib.linux-x86_64-cpython-313/Bio/Phylo copying Bio/Phylo/CDAOIO.py -> build/lib.linux-x86_64-cpython-313/Bio/Phylo copying Bio/Phylo/CDAO.py -> build/lib.linux-x86_64-cpython-313/Bio/Phylo copying Bio/Phylo/BaseTree.py -> build/lib.linux-x86_64-cpython-313/Bio/Phylo creating build/lib.linux-x86_64-cpython-313/Bio/Phylo/PAML copying Bio/Phylo/PAML/yn00.py -> build/lib.linux-x86_64-cpython-313/Bio/Phylo/PAML copying Bio/Phylo/PAML/codeml.py -> build/lib.linux-x86_64-cpython-313/Bio/Phylo/PAML copying Bio/Phylo/PAML/chi2.py -> build/lib.linux-x86_64-cpython-313/Bio/Phylo/PAML copying Bio/Phylo/PAML/baseml.py -> build/lib.linux-x86_64-cpython-313/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_yn00.py -> build/lib.linux-x86_64-cpython-313/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_codeml.py -> build/lib.linux-x86_64-cpython-313/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_baseml.py -> build/lib.linux-x86_64-cpython-313/Bio/Phylo/PAML copying Bio/Phylo/PAML/_paml.py -> build/lib.linux-x86_64-cpython-313/Bio/Phylo/PAML copying Bio/Phylo/PAML/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/Phylo/PAML creating build/lib.linux-x86_64-cpython-313/Bio/UniGene copying Bio/UniGene/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/UniGene creating build/lib.linux-x86_64-cpython-313/Bio/UniProt copying Bio/UniProt/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/UniProt copying Bio/UniProt/GOA.py -> build/lib.linux-x86_64-cpython-313/Bio/UniProt creating build/lib.linux-x86_64-cpython-313/BioSQL copying BioSQL/__init__.py -> build/lib.linux-x86_64-cpython-313/BioSQL copying BioSQL/Loader.py -> build/lib.linux-x86_64-cpython-313/BioSQL copying BioSQL/DBUtils.py -> build/lib.linux-x86_64-cpython-313/BioSQL copying BioSQL/BioSeqDatabase.py -> build/lib.linux-x86_64-cpython-313/BioSQL copying BioSQL/BioSeq.py -> build/lib.linux-x86_64-cpython-313/BioSQL running egg_info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Doc/_build/' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file 'biopython.egg-info/SOURCES.txt' /usr/lib/python3.13/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'Bio.Align.substitution_matrices' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Align.substitution_matrices' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Align.substitution_matrices' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Align.substitution_matrices' to be distributed and are already explicitly excluding 'Bio.Align.substitution_matrices' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) copying Bio/cpairwise2module.c -> build/lib.linux-x86_64-cpython-313/Bio copying Bio/py.typed -> build/lib.linux-x86_64-cpython-313/Bio copying Bio/Align/_aligncore.c -> build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/_alignmentcounts.c -> build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/_codonaligner.c -> build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/_pairwisealigner.c -> build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/_pairwisealigner.h -> build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/substitution_matrices/_arraycore.c -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices copying Bio/Align/substitution_matrices/_arraycore.h -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices creating build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER22 -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER6 -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER74 -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLASTN -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLASTP -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM45 -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM50 -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM62 -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM80 -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM90 -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/DAYHOFF -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/FENG -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/GENETIC -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/GONNET1992 -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/HOXD70 -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/JOHNSON -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/JONES -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/LEVIN -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/MCLACHLAN -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/MDM78 -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/MEGABLAST -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/NUC.4.4 -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM250 -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM30 -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM70 -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/RAO -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/RISLER -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/SCHNEIDER -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/STR -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/TRANS -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Cluster/cluster.c -> build/lib.linux-x86_64-cpython-313/Bio/Cluster copying Bio/Cluster/cluster.h -> build/lib.linux-x86_64-cpython-313/Bio/Cluster copying Bio/Cluster/clustermodule.c -> build/lib.linux-x86_64-cpython-313/Bio/Cluster creating build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-common1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-display1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-format1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-funding1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-link1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-list1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-math1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-modules1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-notat1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-para1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-phrase1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-references1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-related-object1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-section1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Access.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cdd.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_General.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medlars.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mime.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Project.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Protein.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Pub.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PubMed.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Remap.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Rsite.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqres.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Submit.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Systems.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TxInit.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Variation.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_all.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NSE.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NSE.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/OMSSA.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/OMSSA.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PIR_General.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PIR_General.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/SP_General.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/SP_General.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/XHTMLtablesetup.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivearticle.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-classes.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-mixes.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-models.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-modules.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/articlemeta.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/backmatter.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_100301.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_110101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_120101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_130101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_140101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_150101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/chars.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/common.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-classes.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-mixes.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/display.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eInfo_020511.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eLink_090910.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eLink_101123.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/ePost_020511.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSearch_020511.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSpell.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSummary_041029.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/egquery.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/einfo.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/elink.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/elink_020122.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/epost.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esearch.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esummary-v1.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esummary_clinvar.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esummary_gene.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/format.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/htmltable.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsa.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsb.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsc.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsn.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamso.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsr.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isobox.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr1.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr2.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isodia.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk1.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk2.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk4.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat1.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat2.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomfrk.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomopf.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomscr.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isonum.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isopub.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isotech.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/journalmeta.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/link.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/list.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/math.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml2.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml3-qname1.mod -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml3.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathmlsetup.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlalias.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlextra.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/modules.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/notat.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/para.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/phrase.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pmc-1.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_020114.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_080101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_090101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100301.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_110101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_120101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_130101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_130501.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_140101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_150101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_180101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_180601.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_190101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/references.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/section.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/taxon.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/xhtml-table-1.mod -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/xmlspecchars.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs creating build/lib.linux-x86_64-cpython-313/Bio/Entrez/XSDs copying Bio/Entrez/XSDs/IPGReportSet.xsd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/XSDs copying Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/XSDs copying Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/XSDs copying Bio/motifs/_pwm.c -> build/lib.linux-x86_64-cpython-313/Bio/motifs copying Bio/Nexus/cnexus.c -> build/lib.linux-x86_64-cpython-313/Bio/Nexus copying Bio/PDB/bcifhelpermodule.c -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/ccealignmodule.c -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/kdtrees.c -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/SeqIO/_twoBitIO.c -> build/lib.linux-x86_64-cpython-313/Bio/SeqIO copying BioSQL/py.typed -> build/lib.linux-x86_64-cpython-313/BioSQL running build_ext building 'Bio.Align._aligncore' extension creating build/temp.linux-x86_64-cpython-313 creating build/temp.linux-x86_64-cpython-313/Bio creating build/temp.linux-x86_64-cpython-313/Bio/Align gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/include/python3.13 -c Bio/Align/_aligncore.c -o build/temp.linux-x86_64-cpython-313/Bio/Align/_aligncore.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/Bio/Align/_aligncore.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-313/Bio/Align/_aligncore.cpython-313-x86_64-linux-gnu.so building 'Bio.Align._alignmentcounts' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/include/python3.13 -c Bio/Align/_alignmentcounts.c -o build/temp.linux-x86_64-cpython-313/Bio/Align/_alignmentcounts.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/Bio/Align/_alignmentcounts.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-313/Bio/Align/_alignmentcounts.cpython-313-x86_64-linux-gnu.so building 'Bio.Align._codonaligner' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/include/python3.13 -c Bio/Align/_codonaligner.c -o build/temp.linux-x86_64-cpython-313/Bio/Align/_codonaligner.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/Bio/Align/_codonaligner.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-313/Bio/Align/_codonaligner.cpython-313-x86_64-linux-gnu.so building 'Bio.Align._pairwisealigner' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/include/python3.13 -c Bio/Align/_pairwisealigner.c -o build/temp.linux-x86_64-cpython-313/Bio/Align/_pairwisealigner.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/Bio/Align/_pairwisealigner.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-313/Bio/Align/_pairwisealigner.cpython-313-x86_64-linux-gnu.so building 'Bio.Align.substitution_matrices._arraycore' extension creating build/temp.linux-x86_64-cpython-313/Bio/Align/substitution_matrices gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/include/python3.13 -c Bio/Align//substitution_matrices/_arraycore.c -o build/temp.linux-x86_64-cpython-313/Bio/Align//substitution_matrices/_arraycore.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/Bio/Align//substitution_matrices/_arraycore.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/_arraycore.cpython-313-x86_64-linux-gnu.so building 'Bio.cpairwise2' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/include/python3.13 -c Bio/cpairwise2module.c -o build/temp.linux-x86_64-cpython-313/Bio/cpairwise2module.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/Bio/cpairwise2module.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-313/Bio/cpairwise2.cpython-313-x86_64-linux-gnu.so building 'Bio.Nexus.cnexus' extension creating build/temp.linux-x86_64-cpython-313/Bio/Nexus gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/include/python3.13 -c Bio/Nexus/cnexus.c -o build/temp.linux-x86_64-cpython-313/Bio/Nexus/cnexus.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/Bio/Nexus/cnexus.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-313/Bio/Nexus/cnexus.cpython-313-x86_64-linux-gnu.so building 'Bio.motifs._pwm' extension creating build/temp.linux-x86_64-cpython-313/Bio/motifs gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/include/python3.13 -c Bio/motifs/_pwm.c -o build/temp.linux-x86_64-cpython-313/Bio/motifs/_pwm.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/Bio/motifs/_pwm.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-313/Bio/motifs/_pwm.cpython-313-x86_64-linux-gnu.so building 'Bio.Cluster._cluster' extension creating build/temp.linux-x86_64-cpython-313/Bio/Cluster gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/include/python3.13 -c Bio/Cluster/cluster.c -o build/temp.linux-x86_64-cpython-313/Bio/Cluster/cluster.o -DCLUSTER_USE_PYTHON_MEMORY gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/include/python3.13 -c Bio/Cluster/clustermodule.c -o build/temp.linux-x86_64-cpython-313/Bio/Cluster/clustermodule.o -DCLUSTER_USE_PYTHON_MEMORY gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/Bio/Cluster/cluster.o build/temp.linux-x86_64-cpython-313/Bio/Cluster/clustermodule.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-313/Bio/Cluster/_cluster.cpython-313-x86_64-linux-gnu.so building 'Bio.PDB.ccealign' extension creating build/temp.linux-x86_64-cpython-313/Bio/PDB gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/include/python3.13 -c Bio/PDB/ccealignmodule.c -o build/temp.linux-x86_64-cpython-313/Bio/PDB/ccealignmodule.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/Bio/PDB/ccealignmodule.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-313/Bio/PDB/ccealign.cpython-313-x86_64-linux-gnu.so building 'Bio.PDB.kdtrees' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/include/python3.13 -c Bio/PDB/kdtrees.c -o build/temp.linux-x86_64-cpython-313/Bio/PDB/kdtrees.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/Bio/PDB/kdtrees.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-313/Bio/PDB/kdtrees.cpython-313-x86_64-linux-gnu.so building 'Bio.PDB._bcif_helper' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/include/python3.13 -c Bio/PDB/bcifhelpermodule.c -o build/temp.linux-x86_64-cpython-313/Bio/PDB/bcifhelpermodule.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/Bio/PDB/bcifhelpermodule.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-313/Bio/PDB/_bcif_helper.cpython-313-x86_64-linux-gnu.so building 'Bio.SeqIO._twoBitIO' extension creating build/temp.linux-x86_64-cpython-313/Bio/SeqIO gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/include/python3.13 -c Bio/SeqIO/_twoBitIO.c -o build/temp.linux-x86_64-cpython-313/Bio/SeqIO/_twoBitIO.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/Bio/SeqIO/_twoBitIO.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-313/Bio/SeqIO/_twoBitIO.cpython-313-x86_64-linux-gnu.so installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/BioSQL copying build/lib.linux-x86_64-cpython-313/BioSQL/py.typed -> build/bdist.linux-x86_64/wheel/BioSQL copying build/lib.linux-x86_64-cpython-313/BioSQL/BioSeq.py -> build/bdist.linux-x86_64/wheel/BioSQL copying build/lib.linux-x86_64-cpython-313/BioSQL/BioSeqDatabase.py -> build/bdist.linux-x86_64/wheel/BioSQL copying build/lib.linux-x86_64-cpython-313/BioSQL/DBUtils.py -> build/bdist.linux-x86_64/wheel/BioSQL copying build/lib.linux-x86_64-cpython-313/BioSQL/Loader.py -> build/bdist.linux-x86_64/wheel/BioSQL copying build/lib.linux-x86_64-cpython-313/BioSQL/__init__.py -> build/bdist.linux-x86_64/wheel/BioSQL creating build/bdist.linux-x86_64/wheel/Bio copying build/lib.linux-x86_64-cpython-313/Bio/cpairwise2.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/Bio copying build/lib.linux-x86_64-cpython-313/Bio/py.typed -> build/bdist.linux-x86_64/wheel/Bio copying build/lib.linux-x86_64-cpython-313/Bio/cpairwise2module.c -> build/bdist.linux-x86_64/wheel/Bio creating build/bdist.linux-x86_64/wheel/Bio/UniProt copying build/lib.linux-x86_64-cpython-313/Bio/UniProt/GOA.py -> build/bdist.linux-x86_64/wheel/Bio/UniProt copying build/lib.linux-x86_64-cpython-313/Bio/UniProt/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/UniProt creating build/bdist.linux-x86_64/wheel/Bio/UniGene copying build/lib.linux-x86_64-cpython-313/Bio/UniGene/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/UniGene creating build/bdist.linux-x86_64/wheel/Bio/Phylo creating build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML copying build/lib.linux-x86_64-cpython-313/Bio/Phylo/PAML/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML copying build/lib.linux-x86_64-cpython-313/Bio/Phylo/PAML/_paml.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML copying build/lib.linux-x86_64-cpython-313/Bio/Phylo/PAML/_parse_baseml.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML copying build/lib.linux-x86_64-cpython-313/Bio/Phylo/PAML/_parse_codeml.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML copying build/lib.linux-x86_64-cpython-313/Bio/Phylo/PAML/_parse_yn00.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML copying build/lib.linux-x86_64-cpython-313/Bio/Phylo/PAML/baseml.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML copying build/lib.linux-x86_64-cpython-313/Bio/Phylo/PAML/chi2.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML copying build/lib.linux-x86_64-cpython-313/Bio/Phylo/PAML/codeml.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML copying build/lib.linux-x86_64-cpython-313/Bio/Phylo/PAML/yn00.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML copying build/lib.linux-x86_64-cpython-313/Bio/Phylo/BaseTree.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo copying build/lib.linux-x86_64-cpython-313/Bio/Phylo/CDAO.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo copying build/lib.linux-x86_64-cpython-313/Bio/Phylo/CDAOIO.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo copying build/lib.linux-x86_64-cpython-313/Bio/Phylo/Consensus.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo copying build/lib.linux-x86_64-cpython-313/Bio/Phylo/NeXML.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo copying build/lib.linux-x86_64-cpython-313/Bio/Phylo/NeXMLIO.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo copying build/lib.linux-x86_64-cpython-313/Bio/Phylo/Newick.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo copying build/lib.linux-x86_64-cpython-313/Bio/Phylo/NewickIO.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo copying build/lib.linux-x86_64-cpython-313/Bio/Phylo/NexusIO.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo copying build/lib.linux-x86_64-cpython-313/Bio/Phylo/PhyloXML.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo copying build/lib.linux-x86_64-cpython-313/Bio/Phylo/PhyloXMLIO.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo copying build/lib.linux-x86_64-cpython-313/Bio/Phylo/TreeConstruction.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo copying build/lib.linux-x86_64-cpython-313/Bio/Phylo/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo copying build/lib.linux-x86_64-cpython-313/Bio/Phylo/_cdao_owl.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo copying build/lib.linux-x86_64-cpython-313/Bio/Phylo/_io.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo copying build/lib.linux-x86_64-cpython-313/Bio/Phylo/_utils.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo creating build/bdist.linux-x86_64/wheel/Bio/TogoWS copying build/lib.linux-x86_64-cpython-313/Bio/TogoWS/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/TogoWS creating build/bdist.linux-x86_64/wheel/Bio/SwissProt copying build/lib.linux-x86_64-cpython-313/Bio/SwissProt/KeyWList.py -> build/bdist.linux-x86_64/wheel/Bio/SwissProt copying build/lib.linux-x86_64-cpython-313/Bio/SwissProt/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SwissProt creating build/bdist.linux-x86_64/wheel/Bio/SVDSuperimposer copying build/lib.linux-x86_64-cpython-313/Bio/SVDSuperimposer/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SVDSuperimposer creating build/bdist.linux-x86_64/wheel/Bio/Sequencing copying build/lib.linux-x86_64-cpython-313/Bio/Sequencing/Ace.py -> build/bdist.linux-x86_64/wheel/Bio/Sequencing copying build/lib.linux-x86_64-cpython-313/Bio/Sequencing/Phd.py -> build/bdist.linux-x86_64/wheel/Bio/Sequencing copying build/lib.linux-x86_64-cpython-313/Bio/Sequencing/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Sequencing creating build/bdist.linux-x86_64/wheel/Bio/SeqUtils copying build/lib.linux-x86_64-cpython-313/Bio/SeqUtils/CheckSum.py -> build/bdist.linux-x86_64/wheel/Bio/SeqUtils copying build/lib.linux-x86_64-cpython-313/Bio/SeqUtils/IsoelectricPoint.py -> build/bdist.linux-x86_64/wheel/Bio/SeqUtils copying build/lib.linux-x86_64-cpython-313/Bio/SeqUtils/MeltingTemp.py -> build/bdist.linux-x86_64/wheel/Bio/SeqUtils copying build/lib.linux-x86_64-cpython-313/Bio/SeqUtils/ProtParam.py -> build/bdist.linux-x86_64/wheel/Bio/SeqUtils copying build/lib.linux-x86_64-cpython-313/Bio/SeqUtils/ProtParamData.py -> build/bdist.linux-x86_64/wheel/Bio/SeqUtils copying build/lib.linux-x86_64-cpython-313/Bio/SeqUtils/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SeqUtils copying build/lib.linux-x86_64-cpython-313/Bio/SeqUtils/lcc.py -> build/bdist.linux-x86_64/wheel/Bio/SeqUtils creating build/bdist.linux-x86_64/wheel/Bio/SeqIO copying build/lib.linux-x86_64-cpython-313/Bio/SeqIO/_twoBitIO.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/Bio/SeqIO copying build/lib.linux-x86_64-cpython-313/Bio/SeqIO/_twoBitIO.c -> build/bdist.linux-x86_64/wheel/Bio/SeqIO copying build/lib.linux-x86_64-cpython-313/Bio/SeqIO/AbiIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO copying build/lib.linux-x86_64-cpython-313/Bio/SeqIO/AceIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO copying build/lib.linux-x86_64-cpython-313/Bio/SeqIO/FastaIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO copying build/lib.linux-x86_64-cpython-313/Bio/SeqIO/GckIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO copying build/lib.linux-x86_64-cpython-313/Bio/SeqIO/GfaIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO copying build/lib.linux-x86_64-cpython-313/Bio/SeqIO/IgIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO copying build/lib.linux-x86_64-cpython-313/Bio/SeqIO/InsdcIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO copying build/lib.linux-x86_64-cpython-313/Bio/SeqIO/Interfaces.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO copying build/lib.linux-x86_64-cpython-313/Bio/SeqIO/NibIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO copying build/lib.linux-x86_64-cpython-313/Bio/SeqIO/PdbIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO copying build/lib.linux-x86_64-cpython-313/Bio/SeqIO/PhdIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO copying build/lib.linux-x86_64-cpython-313/Bio/SeqIO/PirIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO copying build/lib.linux-x86_64-cpython-313/Bio/SeqIO/QualityIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO copying build/lib.linux-x86_64-cpython-313/Bio/SeqIO/SeqXmlIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO copying build/lib.linux-x86_64-cpython-313/Bio/SeqIO/SffIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO copying build/lib.linux-x86_64-cpython-313/Bio/SeqIO/SnapGeneIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO copying build/lib.linux-x86_64-cpython-313/Bio/SeqIO/SwissIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO copying build/lib.linux-x86_64-cpython-313/Bio/SeqIO/TabIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO copying build/lib.linux-x86_64-cpython-313/Bio/SeqIO/TwoBitIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO copying build/lib.linux-x86_64-cpython-313/Bio/SeqIO/UniprotIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO copying build/lib.linux-x86_64-cpython-313/Bio/SeqIO/XdnaIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO copying build/lib.linux-x86_64-cpython-313/Bio/SeqIO/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO copying build/lib.linux-x86_64-cpython-313/Bio/SeqIO/_index.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/InterproscanIO copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/InterproscanIO/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/InterproscanIO copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/InterproscanIO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/ExonerateIO copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/ExonerateIO/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/ExonerateIO copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/ExonerateIO/_base.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/ExonerateIO copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/ExonerateIO copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/ExonerateIO copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/ExonerateIO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/InfernalIO copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/InfernalIO/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/InfernalIO copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/InfernalIO/_base.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/InfernalIO copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/InfernalIO/infernal_tab.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/InfernalIO copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/InfernalIO/infernal_text.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/InfernalIO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/HmmerIO copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/HmmerIO/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/HmmerIO copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/HmmerIO/_base.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/HmmerIO copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/HmmerIO copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/HmmerIO copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/HmmerIO copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/HmmerIO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/HHsuiteIO copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/HHsuiteIO/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/HHsuiteIO copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/HHsuiteIO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/BlastIO copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/BlastIO/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/BlastIO copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/BlastIO/blast_tab.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/BlastIO copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/BlastIO/blast_xml.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/BlastIO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/_model copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/_model/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/_model copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/_model/_base.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/_model copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/_model/hit.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/_model copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/_model/hsp.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/_model copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/_model/query.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/_model copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/BlatIO.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/FastaIO.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/_index.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/_utils.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO creating build/bdist.linux-x86_64/wheel/Bio/SCOP copying build/lib.linux-x86_64-cpython-313/Bio/SCOP/Cla.py -> build/bdist.linux-x86_64/wheel/Bio/SCOP copying build/lib.linux-x86_64-cpython-313/Bio/SCOP/Des.py -> build/bdist.linux-x86_64/wheel/Bio/SCOP copying build/lib.linux-x86_64-cpython-313/Bio/SCOP/Dom.py -> build/bdist.linux-x86_64/wheel/Bio/SCOP copying build/lib.linux-x86_64-cpython-313/Bio/SCOP/Hie.py -> build/bdist.linux-x86_64/wheel/Bio/SCOP copying build/lib.linux-x86_64-cpython-313/Bio/SCOP/Raf.py -> build/bdist.linux-x86_64/wheel/Bio/SCOP copying build/lib.linux-x86_64-cpython-313/Bio/SCOP/Residues.py -> build/bdist.linux-x86_64/wheel/Bio/SCOP copying build/lib.linux-x86_64-cpython-313/Bio/SCOP/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SCOP creating build/bdist.linux-x86_64/wheel/Bio/Restriction copying build/lib.linux-x86_64-cpython-313/Bio/Restriction/PrintFormat.py -> build/bdist.linux-x86_64/wheel/Bio/Restriction copying build/lib.linux-x86_64-cpython-313/Bio/Restriction/Restriction.py -> build/bdist.linux-x86_64/wheel/Bio/Restriction copying build/lib.linux-x86_64-cpython-313/Bio/Restriction/Restriction_Dictionary.py -> build/bdist.linux-x86_64/wheel/Bio/Restriction copying build/lib.linux-x86_64-cpython-313/Bio/Restriction/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Restriction creating build/bdist.linux-x86_64/wheel/Bio/PopGen creating build/bdist.linux-x86_64/wheel/Bio/PopGen/GenePop copying build/lib.linux-x86_64-cpython-313/Bio/PopGen/GenePop/FileParser.py -> build/bdist.linux-x86_64/wheel/Bio/PopGen/GenePop copying build/lib.linux-x86_64-cpython-313/Bio/PopGen/GenePop/LargeFileParser.py -> build/bdist.linux-x86_64/wheel/Bio/PopGen/GenePop copying build/lib.linux-x86_64-cpython-313/Bio/PopGen/GenePop/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/PopGen/GenePop copying build/lib.linux-x86_64-cpython-313/Bio/PopGen/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/PopGen creating build/bdist.linux-x86_64/wheel/Bio/phenotype copying build/lib.linux-x86_64-cpython-313/Bio/phenotype/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/phenotype copying build/lib.linux-x86_64-cpython-313/Bio/phenotype/phen_micro.py -> build/bdist.linux-x86_64/wheel/Bio/phenotype copying build/lib.linux-x86_64-cpython-313/Bio/phenotype/pm_fitting.py -> build/bdist.linux-x86_64/wheel/Bio/phenotype creating build/bdist.linux-x86_64/wheel/Bio/Pathway creating build/bdist.linux-x86_64/wheel/Bio/Pathway/Rep copying build/lib.linux-x86_64-cpython-313/Bio/Pathway/Rep/Graph.py -> build/bdist.linux-x86_64/wheel/Bio/Pathway/Rep copying build/lib.linux-x86_64-cpython-313/Bio/Pathway/Rep/MultiGraph.py -> build/bdist.linux-x86_64/wheel/Bio/Pathway/Rep copying build/lib.linux-x86_64-cpython-313/Bio/Pathway/Rep/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Pathway/Rep copying build/lib.linux-x86_64-cpython-313/Bio/Pathway/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Pathway creating build/bdist.linux-x86_64/wheel/Bio/NMR copying build/lib.linux-x86_64-cpython-313/Bio/NMR/NOEtools.py -> build/bdist.linux-x86_64/wheel/Bio/NMR copying build/lib.linux-x86_64-cpython-313/Bio/NMR/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/NMR copying build/lib.linux-x86_64-cpython-313/Bio/NMR/xpktools.py -> build/bdist.linux-x86_64/wheel/Bio/NMR creating build/bdist.linux-x86_64/wheel/Bio/Nexus copying build/lib.linux-x86_64-cpython-313/Bio/Nexus/cnexus.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/Bio/Nexus copying build/lib.linux-x86_64-cpython-313/Bio/Nexus/cnexus.c -> build/bdist.linux-x86_64/wheel/Bio/Nexus copying build/lib.linux-x86_64-cpython-313/Bio/Nexus/Nexus.py -> build/bdist.linux-x86_64/wheel/Bio/Nexus copying build/lib.linux-x86_64-cpython-313/Bio/Nexus/Nodes.py -> build/bdist.linux-x86_64/wheel/Bio/Nexus copying build/lib.linux-x86_64-cpython-313/Bio/Nexus/StandardData.py -> build/bdist.linux-x86_64/wheel/Bio/Nexus copying build/lib.linux-x86_64-cpython-313/Bio/Nexus/Trees.py -> build/bdist.linux-x86_64/wheel/Bio/Nexus copying build/lib.linux-x86_64-cpython-313/Bio/Nexus/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Nexus creating build/bdist.linux-x86_64/wheel/Bio/motifs copying build/lib.linux-x86_64-cpython-313/Bio/motifs/_pwm.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/Bio/motifs copying build/lib.linux-x86_64-cpython-313/Bio/motifs/_pwm.c -> build/bdist.linux-x86_64/wheel/Bio/motifs creating build/bdist.linux-x86_64/wheel/Bio/motifs/jaspar copying build/lib.linux-x86_64-cpython-313/Bio/motifs/jaspar/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/motifs/jaspar copying build/lib.linux-x86_64-cpython-313/Bio/motifs/jaspar/db.py -> build/bdist.linux-x86_64/wheel/Bio/motifs/jaspar copying build/lib.linux-x86_64-cpython-313/Bio/motifs/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/motifs copying build/lib.linux-x86_64-cpython-313/Bio/motifs/alignace.py -> build/bdist.linux-x86_64/wheel/Bio/motifs copying build/lib.linux-x86_64-cpython-313/Bio/motifs/clusterbuster.py -> build/bdist.linux-x86_64/wheel/Bio/motifs copying build/lib.linux-x86_64-cpython-313/Bio/motifs/mast.py -> build/bdist.linux-x86_64/wheel/Bio/motifs copying build/lib.linux-x86_64-cpython-313/Bio/motifs/matrix.py -> build/bdist.linux-x86_64/wheel/Bio/motifs copying build/lib.linux-x86_64-cpython-313/Bio/motifs/meme.py -> build/bdist.linux-x86_64/wheel/Bio/motifs copying build/lib.linux-x86_64-cpython-313/Bio/motifs/minimal.py -> build/bdist.linux-x86_64/wheel/Bio/motifs copying build/lib.linux-x86_64-cpython-313/Bio/motifs/pfm.py -> build/bdist.linux-x86_64/wheel/Bio/motifs copying build/lib.linux-x86_64-cpython-313/Bio/motifs/thresholds.py -> build/bdist.linux-x86_64/wheel/Bio/motifs copying build/lib.linux-x86_64-cpython-313/Bio/motifs/transfac.py -> build/bdist.linux-x86_64/wheel/Bio/motifs copying build/lib.linux-x86_64-cpython-313/Bio/motifs/xms.py -> build/bdist.linux-x86_64/wheel/Bio/motifs creating build/bdist.linux-x86_64/wheel/Bio/Medline copying build/lib.linux-x86_64-cpython-313/Bio/Medline/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Medline creating build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/_bcif_helper.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/kdtrees.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/ccealign.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/kdtrees.c -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/ccealignmodule.c -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/bcifhelpermodule.c -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/AbstractPropertyMap.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/Atom.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/Chain.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/DSSP.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/Dice.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/Entity.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/FragmentMapper.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/HSExposure.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/MMCIF2Dict.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/MMCIFParser.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/Model.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/NACCESS.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/NeighborSearch.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/PDBExceptions.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/PDBIO.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/PDBList.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/PDBMLParser.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/PDBParser.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/PICIO.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/PSEA.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/Polypeptide.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/Residue.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/ResidueDepth.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/SASA.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/SCADIO.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/Selection.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/Structure.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/StructureAlignment.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/StructureBuilder.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/Superimposer.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/alphafold_db.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/binary_cif.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/cealign.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/ic_data.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/ic_rebuild.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/internal_coords.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/mmcifio.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/parse_pdb_header.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/qcprot.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/vectors.py -> build/bdist.linux-x86_64/wheel/Bio/PDB creating build/bdist.linux-x86_64/wheel/Bio/PDB/mmtf copying build/lib.linux-x86_64-cpython-313/Bio/PDB/mmtf/DefaultParser.py -> build/bdist.linux-x86_64/wheel/Bio/PDB/mmtf copying build/lib.linux-x86_64-cpython-313/Bio/PDB/mmtf/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/PDB/mmtf copying build/lib.linux-x86_64-cpython-313/Bio/PDB/mmtf/mmtfio.py -> build/bdist.linux-x86_64/wheel/Bio/PDB/mmtf creating build/bdist.linux-x86_64/wheel/Bio/KEGG creating build/bdist.linux-x86_64/wheel/Bio/KEGG/KGML copying build/lib.linux-x86_64-cpython-313/Bio/KEGG/KGML/KGML_parser.py -> build/bdist.linux-x86_64/wheel/Bio/KEGG/KGML copying build/lib.linux-x86_64-cpython-313/Bio/KEGG/KGML/KGML_pathway.py -> build/bdist.linux-x86_64/wheel/Bio/KEGG/KGML copying build/lib.linux-x86_64-cpython-313/Bio/KEGG/KGML/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/KEGG/KGML creating build/bdist.linux-x86_64/wheel/Bio/KEGG/Map copying build/lib.linux-x86_64-cpython-313/Bio/KEGG/Map/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/KEGG/Map creating build/bdist.linux-x86_64/wheel/Bio/KEGG/Gene copying build/lib.linux-x86_64-cpython-313/Bio/KEGG/Gene/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/KEGG/Gene creating build/bdist.linux-x86_64/wheel/Bio/KEGG/Enzyme copying build/lib.linux-x86_64-cpython-313/Bio/KEGG/Enzyme/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/KEGG/Enzyme creating build/bdist.linux-x86_64/wheel/Bio/KEGG/Compound copying build/lib.linux-x86_64-cpython-313/Bio/KEGG/Compound/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/KEGG/Compound copying build/lib.linux-x86_64-cpython-313/Bio/KEGG/REST.py -> build/bdist.linux-x86_64/wheel/Bio/KEGG copying build/lib.linux-x86_64-cpython-313/Bio/KEGG/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/KEGG creating build/bdist.linux-x86_64/wheel/Bio/HMM copying build/lib.linux-x86_64-cpython-313/Bio/HMM/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/HMM creating build/bdist.linux-x86_64/wheel/Bio/Graphics creating build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-313/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-313/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-313/Bio/Graphics/GenomeDiagram/_Colors.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-313/Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-313/Bio/Graphics/GenomeDiagram/_Diagram.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-313/Bio/Graphics/GenomeDiagram/_Feature.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-313/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-313/Bio/Graphics/GenomeDiagram/_Graph.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-313/Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-313/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-313/Bio/Graphics/GenomeDiagram/_Track.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-313/Bio/Graphics/GenomeDiagram/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-313/Bio/Graphics/BasicChromosome.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics copying build/lib.linux-x86_64-cpython-313/Bio/Graphics/ColorSpiral.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics copying build/lib.linux-x86_64-cpython-313/Bio/Graphics/Comparative.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics copying build/lib.linux-x86_64-cpython-313/Bio/Graphics/DisplayRepresentation.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics copying build/lib.linux-x86_64-cpython-313/Bio/Graphics/Distribution.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics copying build/lib.linux-x86_64-cpython-313/Bio/Graphics/KGML_vis.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics copying build/lib.linux-x86_64-cpython-313/Bio/Graphics/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics creating build/bdist.linux-x86_64/wheel/Bio/Geo copying build/lib.linux-x86_64-cpython-313/Bio/Geo/Record.py -> build/bdist.linux-x86_64/wheel/Bio/Geo copying build/lib.linux-x86_64-cpython-313/Bio/Geo/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Geo creating build/bdist.linux-x86_64/wheel/Bio/GenBank copying build/lib.linux-x86_64-cpython-313/Bio/GenBank/Record.py -> build/bdist.linux-x86_64/wheel/Bio/GenBank copying build/lib.linux-x86_64-cpython-313/Bio/GenBank/Scanner.py -> build/bdist.linux-x86_64/wheel/Bio/GenBank copying build/lib.linux-x86_64-cpython-313/Bio/GenBank/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/GenBank copying build/lib.linux-x86_64-cpython-313/Bio/GenBank/utils.py -> build/bdist.linux-x86_64/wheel/Bio/GenBank creating build/bdist.linux-x86_64/wheel/Bio/ExPASy copying build/lib.linux-x86_64-cpython-313/Bio/ExPASy/Enzyme.py -> build/bdist.linux-x86_64/wheel/Bio/ExPASy copying build/lib.linux-x86_64-cpython-313/Bio/ExPASy/Prodoc.py -> build/bdist.linux-x86_64/wheel/Bio/ExPASy copying build/lib.linux-x86_64-cpython-313/Bio/ExPASy/Prosite.py -> build/bdist.linux-x86_64/wheel/Bio/ExPASy copying build/lib.linux-x86_64-cpython-313/Bio/ExPASy/ScanProsite.py -> build/bdist.linux-x86_64/wheel/Bio/ExPASy copying build/lib.linux-x86_64-cpython-313/Bio/ExPASy/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/ExPASy copying build/lib.linux-x86_64-cpython-313/Bio/ExPASy/cellosaurus.py -> build/bdist.linux-x86_64/wheel/Bio/ExPASy creating build/bdist.linux-x86_64/wheel/Bio/Entrez creating build/bdist.linux-x86_64/wheel/Bio/Entrez/XSDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/XSDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/XSDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/XSDs/IPGReportSet.xsd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/XSDs creating build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/xmlspecchars.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/xhtml-table-1.mod -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/taxon.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/section.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/references.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/pubmed_190101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/pubmed_180601.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/pubmed_180101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/pubmed_150101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/pubmed_140101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/pubmed_130501.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/pubmed_130101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/pubmed_120101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/pubmed_110101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/pubmed_100301.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/pubmed_100101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/pubmed_090101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/pubmed_080101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/pubmed_020114.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/pmc-1.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/phrase.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/para.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/notat.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/modules.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/mmlextra.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/mmlalias.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/mathmlsetup.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/mathml3.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/mathml3-qname1.mod -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/mathml2.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/math.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/list.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/link.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/journalmeta.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/isotech.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/isopub.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/isonum.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/isomscr.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/isomopf.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/isomfrk.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/isolat2.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/isolat1.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/isogrk4.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/isogrk3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/isogrk2.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/isogrk1.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/isodia.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/isocyr2.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/isocyr1.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/isobox.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/isoamsr.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/isoamso.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/isoamsn.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/isoamsc.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/isoamsb.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/isoamsa.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/htmltable.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/format.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/esummary_gene.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/esummary_clinvar.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/esummary-v1.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/esearch.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/epost.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/elink_020122.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/elink.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/einfo.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/egquery.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/eSummary_041029.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/eSpell.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/eSearch_020511.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/ePost_020511.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/eLink_101123.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/eLink_090910.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/eInfo_020511.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/display.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/default-mixes.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/default-classes.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/common.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/chars.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/bookdoc_150101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/bookdoc_140101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/bookdoc_130101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/bookdoc_120101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/bookdoc_110101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/bookdoc_100301.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/backmatter.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/articlemeta.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/archivecustom-modules.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/archivecustom-models.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/archivecustom-mixes.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/archivecustom-classes.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/archivearticle.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/XHTMLtablesetup.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/SP_General.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/SP_General.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/PRF_General.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/PRF_General.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/PIR_General.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/PIR_General.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/PDB_General.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/PDB_General.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/OMSSA.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/OMSSA.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NSE.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NSE.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_all.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Variation.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_TxInit.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Systems.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Submit.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Sequence.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Seqres.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Rsite.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Remap.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_RNA.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_PubMed.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Pub.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Protein.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Project.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Organism.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Mime.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Medlars.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_General.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Gene.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Cdd.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Blast4.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_BioSource.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Access.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/MMDB_Features.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/MMDB.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/MMDB.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-section1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-related-object1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-references1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-phrase1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-para1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-notat1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-modules1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-math1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-list1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-link1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-funding1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-format1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-display1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-common1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/HomoloGene.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/GenBank_General.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/EMBL_General.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/Parser.py -> build/bdist.linux-x86_64/wheel/Bio/Entrez copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Entrez creating build/bdist.linux-x86_64/wheel/Bio/Emboss copying build/lib.linux-x86_64-cpython-313/Bio/Emboss/Primer3.py -> build/bdist.linux-x86_64/wheel/Bio/Emboss copying build/lib.linux-x86_64-cpython-313/Bio/Emboss/PrimerSearch.py -> build/bdist.linux-x86_64/wheel/Bio/Emboss copying build/lib.linux-x86_64-cpython-313/Bio/Emboss/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Emboss creating build/bdist.linux-x86_64/wheel/Bio/Data copying build/lib.linux-x86_64-cpython-313/Bio/Data/CodonTable.py -> build/bdist.linux-x86_64/wheel/Bio/Data copying build/lib.linux-x86_64-cpython-313/Bio/Data/IUPACData.py -> build/bdist.linux-x86_64/wheel/Bio/Data copying build/lib.linux-x86_64-cpython-313/Bio/Data/PDBData.py -> build/bdist.linux-x86_64/wheel/Bio/Data copying build/lib.linux-x86_64-cpython-313/Bio/Data/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Data creating build/bdist.linux-x86_64/wheel/Bio/Compass copying build/lib.linux-x86_64-cpython-313/Bio/Compass/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Compass creating build/bdist.linux-x86_64/wheel/Bio/codonalign copying build/lib.linux-x86_64-cpython-313/Bio/codonalign/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/codonalign copying build/lib.linux-x86_64-cpython-313/Bio/codonalign/codonalignment.py -> build/bdist.linux-x86_64/wheel/Bio/codonalign copying build/lib.linux-x86_64-cpython-313/Bio/codonalign/codonseq.py -> build/bdist.linux-x86_64/wheel/Bio/codonalign creating build/bdist.linux-x86_64/wheel/Bio/Cluster copying build/lib.linux-x86_64-cpython-313/Bio/Cluster/_cluster.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/Bio/Cluster copying build/lib.linux-x86_64-cpython-313/Bio/Cluster/clustermodule.c -> build/bdist.linux-x86_64/wheel/Bio/Cluster copying build/lib.linux-x86_64-cpython-313/Bio/Cluster/cluster.h -> build/bdist.linux-x86_64/wheel/Bio/Cluster copying build/lib.linux-x86_64-cpython-313/Bio/Cluster/cluster.c -> build/bdist.linux-x86_64/wheel/Bio/Cluster copying build/lib.linux-x86_64-cpython-313/Bio/Cluster/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Cluster creating build/bdist.linux-x86_64/wheel/Bio/CAPS copying build/lib.linux-x86_64-cpython-313/Bio/CAPS/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/CAPS creating build/bdist.linux-x86_64/wheel/Bio/Blast copying build/lib.linux-x86_64-cpython-313/Bio/Blast/NCBIWWW.py -> build/bdist.linux-x86_64/wheel/Bio/Blast copying build/lib.linux-x86_64-cpython-313/Bio/Blast/NCBIXML.py -> build/bdist.linux-x86_64/wheel/Bio/Blast copying build/lib.linux-x86_64-cpython-313/Bio/Blast/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Blast copying build/lib.linux-x86_64-cpython-313/Bio/Blast/_parser.py -> build/bdist.linux-x86_64/wheel/Bio/Blast copying build/lib.linux-x86_64-cpython-313/Bio/Blast/_writers.py -> build/bdist.linux-x86_64/wheel/Bio/Blast creating build/bdist.linux-x86_64/wheel/Bio/Alphabet copying build/lib.linux-x86_64-cpython-313/Bio/Alphabet/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Alphabet creating build/bdist.linux-x86_64/wheel/Bio/AlignIO copying build/lib.linux-x86_64-cpython-313/Bio/AlignIO/ClustalIO.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO copying build/lib.linux-x86_64-cpython-313/Bio/AlignIO/EmbossIO.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO copying build/lib.linux-x86_64-cpython-313/Bio/AlignIO/FastaIO.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO copying build/lib.linux-x86_64-cpython-313/Bio/AlignIO/Interfaces.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO copying build/lib.linux-x86_64-cpython-313/Bio/AlignIO/MafIO.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO copying build/lib.linux-x86_64-cpython-313/Bio/AlignIO/MauveIO.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO copying build/lib.linux-x86_64-cpython-313/Bio/AlignIO/MsfIO.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO copying build/lib.linux-x86_64-cpython-313/Bio/AlignIO/NexusIO.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO copying build/lib.linux-x86_64-cpython-313/Bio/AlignIO/PhylipIO.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO copying build/lib.linux-x86_64-cpython-313/Bio/AlignIO/StockholmIO.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO copying build/lib.linux-x86_64-cpython-313/Bio/AlignIO/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO creating build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/_pairwisealigner.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/_codonaligner.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/_alignmentcounts.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/_aligncore.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/_pairwisealigner.h -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/_pairwisealigner.c -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/_codonaligner.c -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/_alignmentcounts.c -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/_aligncore.c -> build/bdist.linux-x86_64/wheel/Bio/Align creating build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/_arraycore.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices creating build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/TRANS -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/STR -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/SCHNEIDER -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/RISLER -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/RAO -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/PAM70 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/PAM30 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/PAM250 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/NUC.4.4 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/MEGABLAST -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/MDM78 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/MCLACHLAN -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/LEVIN -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/JONES -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/JOHNSON -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/HOXD70 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/GONNET1992 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/GENETIC -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/FENG -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/DAYHOFF -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/BLOSUM90 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/BLOSUM80 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/BLOSUM62 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/BLOSUM50 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/BLOSUM45 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/BLASTP -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/BLASTN -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/BENNER74 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/BENNER6 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/BENNER22 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/_arraycore.h -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/_arraycore.c -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices copying build/lib.linux-x86_64-cpython-313/Bio/Align/AlignInfo.py -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/a2m.py -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/analysis.py -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/bed.py -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/bigbed.py -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/bigmaf.py -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/bigpsl.py -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/chain.py -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/clustal.py -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/emboss.py -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/exonerate.py -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/fasta.py -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/hhr.py -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/interfaces.py -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/maf.py -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/mauve.py -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/msf.py -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/nexus.py -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/phylip.py -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/psl.py -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/sam.py -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/stockholm.py -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/tabular.py -> build/bdist.linux-x86_64/wheel/Bio/Align creating build/bdist.linux-x86_64/wheel/Bio/Affy copying build/lib.linux-x86_64-cpython-313/Bio/Affy/CelFile.py -> build/bdist.linux-x86_64/wheel/Bio/Affy copying build/lib.linux-x86_64-cpython-313/Bio/Affy/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Affy copying build/lib.linux-x86_64-cpython-313/Bio/File.py -> build/bdist.linux-x86_64/wheel/Bio copying build/lib.linux-x86_64-cpython-313/Bio/Seq.py -> build/bdist.linux-x86_64/wheel/Bio copying build/lib.linux-x86_64-cpython-313/Bio/SeqFeature.py -> build/bdist.linux-x86_64/wheel/Bio copying build/lib.linux-x86_64-cpython-313/Bio/SeqRecord.py -> build/bdist.linux-x86_64/wheel/Bio copying build/lib.linux-x86_64-cpython-313/Bio/__init__.py -> build/bdist.linux-x86_64/wheel/Bio copying build/lib.linux-x86_64-cpython-313/Bio/_utils.py -> build/bdist.linux-x86_64/wheel/Bio copying build/lib.linux-x86_64-cpython-313/Bio/bgzf.py -> build/bdist.linux-x86_64/wheel/Bio copying build/lib.linux-x86_64-cpython-313/Bio/pairwise2.py -> build/bdist.linux-x86_64/wheel/Bio running install_egg_info Copying biopython.egg-info to build/bdist.linux-x86_64/wheel/biopython-1.86-py3.13.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/biopython-1.86.dist-info/WHEEL creating '/builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir/pip-wheel-b1_ue0fd/.tmp-iyou3vjf/biopython-1.86-cp313-cp313-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'Bio/File.py' adding 'Bio/Seq.py' adding 'Bio/SeqFeature.py' adding 'Bio/SeqRecord.py' adding 'Bio/__init__.py' adding 'Bio/_utils.py' adding 'Bio/bgzf.py' adding 'Bio/cpairwise2.cpython-313-x86_64-linux-gnu.so' adding 'Bio/cpairwise2module.c' adding 'Bio/pairwise2.py' adding 'Bio/py.typed' adding 'Bio/Affy/CelFile.py' adding 'Bio/Affy/__init__.py' adding 'Bio/Align/AlignInfo.py' adding 'Bio/Align/__init__.py' adding 'Bio/Align/_aligncore.c' adding 'Bio/Align/_aligncore.cpython-313-x86_64-linux-gnu.so' adding 'Bio/Align/_alignmentcounts.c' adding 'Bio/Align/_alignmentcounts.cpython-313-x86_64-linux-gnu.so' adding 'Bio/Align/_codonaligner.c' adding 'Bio/Align/_codonaligner.cpython-313-x86_64-linux-gnu.so' adding 'Bio/Align/_pairwisealigner.c' adding 'Bio/Align/_pairwisealigner.cpython-313-x86_64-linux-gnu.so' adding 'Bio/Align/_pairwisealigner.h' adding 'Bio/Align/a2m.py' adding 'Bio/Align/analysis.py' adding 'Bio/Align/bed.py' adding 'Bio/Align/bigbed.py' adding 'Bio/Align/bigmaf.py' adding 'Bio/Align/bigpsl.py' adding 'Bio/Align/chain.py' adding 'Bio/Align/clustal.py' adding 'Bio/Align/emboss.py' adding 'Bio/Align/exonerate.py' adding 'Bio/Align/fasta.py' adding 'Bio/Align/hhr.py' adding 'Bio/Align/interfaces.py' adding 'Bio/Align/maf.py' adding 'Bio/Align/mauve.py' adding 'Bio/Align/msf.py' adding 'Bio/Align/nexus.py' adding 'Bio/Align/phylip.py' adding 'Bio/Align/psl.py' adding 'Bio/Align/sam.py' adding 'Bio/Align/stockholm.py' adding 'Bio/Align/tabular.py' adding 'Bio/Align/substitution_matrices/__init__.py' adding 'Bio/Align/substitution_matrices/_arraycore.c' adding 'Bio/Align/substitution_matrices/_arraycore.cpython-313-x86_64-linux-gnu.so' adding 'Bio/Align/substitution_matrices/_arraycore.h' adding 'Bio/Align/substitution_matrices/data/BENNER22' adding 'Bio/Align/substitution_matrices/data/BENNER6' adding 'Bio/Align/substitution_matrices/data/BENNER74' adding 'Bio/Align/substitution_matrices/data/BLASTN' adding 'Bio/Align/substitution_matrices/data/BLASTP' adding 'Bio/Align/substitution_matrices/data/BLOSUM45' adding 'Bio/Align/substitution_matrices/data/BLOSUM50' adding 'Bio/Align/substitution_matrices/data/BLOSUM62' adding 'Bio/Align/substitution_matrices/data/BLOSUM80' adding 'Bio/Align/substitution_matrices/data/BLOSUM90' adding 'Bio/Align/substitution_matrices/data/DAYHOFF' adding 'Bio/Align/substitution_matrices/data/FENG' adding 'Bio/Align/substitution_matrices/data/GENETIC' adding 'Bio/Align/substitution_matrices/data/GONNET1992' adding 'Bio/Align/substitution_matrices/data/HOXD70' adding 'Bio/Align/substitution_matrices/data/JOHNSON' adding 'Bio/Align/substitution_matrices/data/JONES' adding 'Bio/Align/substitution_matrices/data/LEVIN' adding 'Bio/Align/substitution_matrices/data/MCLACHLAN' adding 'Bio/Align/substitution_matrices/data/MDM78' adding 'Bio/Align/substitution_matrices/data/MEGABLAST' adding 'Bio/Align/substitution_matrices/data/NUC.4.4' adding 'Bio/Align/substitution_matrices/data/PAM250' adding 'Bio/Align/substitution_matrices/data/PAM30' adding 'Bio/Align/substitution_matrices/data/PAM70' adding 'Bio/Align/substitution_matrices/data/RAO' adding 'Bio/Align/substitution_matrices/data/RISLER' adding 'Bio/Align/substitution_matrices/data/SCHNEIDER' adding 'Bio/Align/substitution_matrices/data/STR' adding 'Bio/Align/substitution_matrices/data/TRANS' adding 'Bio/AlignIO/ClustalIO.py' adding 'Bio/AlignIO/EmbossIO.py' adding 'Bio/AlignIO/FastaIO.py' adding 'Bio/AlignIO/Interfaces.py' adding 'Bio/AlignIO/MafIO.py' adding 'Bio/AlignIO/MauveIO.py' adding 'Bio/AlignIO/MsfIO.py' adding 'Bio/AlignIO/NexusIO.py' adding 'Bio/AlignIO/PhylipIO.py' adding 'Bio/AlignIO/StockholmIO.py' adding 'Bio/AlignIO/__init__.py' adding 'Bio/Alphabet/__init__.py' adding 'Bio/Blast/NCBIWWW.py' adding 'Bio/Blast/NCBIXML.py' adding 'Bio/Blast/__init__.py' adding 'Bio/Blast/_parser.py' adding 'Bio/Blast/_writers.py' adding 'Bio/CAPS/__init__.py' adding 'Bio/Cluster/__init__.py' adding 'Bio/Cluster/_cluster.cpython-313-x86_64-linux-gnu.so' adding 'Bio/Cluster/cluster.c' adding 'Bio/Cluster/cluster.h' adding 'Bio/Cluster/clustermodule.c' adding 'Bio/Compass/__init__.py' adding 'Bio/Data/CodonTable.py' adding 'Bio/Data/IUPACData.py' adding 'Bio/Data/PDBData.py' adding 'Bio/Data/__init__.py' adding 'Bio/Emboss/Primer3.py' adding 'Bio/Emboss/PrimerSearch.py' adding 'Bio/Emboss/__init__.py' adding 'Bio/Entrez/Parser.py' adding 'Bio/Entrez/__init__.py' adding 'Bio/Entrez/DTDs/BITS-embedded-index2.ent' adding 'Bio/Entrez/DTDs/BITS-question-answer2.ent' adding 'Bio/Entrez/DTDs/Docsum_3_0.dtd' adding 'Bio/Entrez/DTDs/Docsum_3_0.mod.dtd' adding 'Bio/Entrez/DTDs/Docsum_3_1.dtd' adding 'Bio/Entrez/DTDs/Docsum_3_1.mod.dtd' adding 'Bio/Entrez/DTDs/Docsum_3_2.dtd' adding 'Bio/Entrez/DTDs/Docsum_3_2.mod.dtd' adding 'Bio/Entrez/DTDs/Docsum_3_3.dtd' adding 'Bio/Entrez/DTDs/Docsum_3_3.mod.dtd' adding 'Bio/Entrez/DTDs/Docsum_3_4.dtd' adding 'Bio/Entrez/DTDs/Docsum_3_4.mod.dtd' adding 'Bio/Entrez/DTDs/EMBL_General.dtd' adding 'Bio/Entrez/DTDs/EMBL_General.mod.dtd' adding 'Bio/Entrez/DTDs/GenBank_General.dtd' 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'Bio/SeqIO/Interfaces.py' adding 'Bio/SeqIO/NibIO.py' adding 'Bio/SeqIO/PdbIO.py' adding 'Bio/SeqIO/PhdIO.py' adding 'Bio/SeqIO/PirIO.py' adding 'Bio/SeqIO/QualityIO.py' adding 'Bio/SeqIO/SeqXmlIO.py' adding 'Bio/SeqIO/SffIO.py' adding 'Bio/SeqIO/SnapGeneIO.py' adding 'Bio/SeqIO/SwissIO.py' adding 'Bio/SeqIO/TabIO.py' adding 'Bio/SeqIO/TwoBitIO.py' adding 'Bio/SeqIO/UniprotIO.py' adding 'Bio/SeqIO/XdnaIO.py' adding 'Bio/SeqIO/__init__.py' adding 'Bio/SeqIO/_index.py' adding 'Bio/SeqIO/_twoBitIO.c' adding 'Bio/SeqIO/_twoBitIO.cpython-313-x86_64-linux-gnu.so' adding 'Bio/SeqUtils/CheckSum.py' adding 'Bio/SeqUtils/IsoelectricPoint.py' adding 'Bio/SeqUtils/MeltingTemp.py' adding 'Bio/SeqUtils/ProtParam.py' adding 'Bio/SeqUtils/ProtParamData.py' adding 'Bio/SeqUtils/__init__.py' adding 'Bio/SeqUtils/lcc.py' adding 'Bio/Sequencing/Ace.py' adding 'Bio/Sequencing/Phd.py' adding 'Bio/Sequencing/__init__.py' adding 'Bio/SwissProt/KeyWList.py' adding 'Bio/SwissProt/__init__.py' adding 'Bio/TogoWS/__init__.py' adding 'Bio/UniGene/__init__.py' adding 'Bio/UniProt/GOA.py' adding 'Bio/UniProt/__init__.py' adding 'Bio/codonalign/__init__.py' adding 'Bio/codonalign/codonalignment.py' adding 'Bio/codonalign/codonseq.py' adding 'Bio/motifs/__init__.py' adding 'Bio/motifs/_pwm.c' adding 'Bio/motifs/_pwm.cpython-313-x86_64-linux-gnu.so' adding 'Bio/motifs/alignace.py' adding 'Bio/motifs/clusterbuster.py' adding 'Bio/motifs/mast.py' adding 'Bio/motifs/matrix.py' adding 'Bio/motifs/meme.py' adding 'Bio/motifs/minimal.py' adding 'Bio/motifs/pfm.py' adding 'Bio/motifs/thresholds.py' adding 'Bio/motifs/transfac.py' adding 'Bio/motifs/xms.py' adding 'Bio/motifs/jaspar/__init__.py' adding 'Bio/motifs/jaspar/db.py' adding 'Bio/phenotype/__init__.py' adding 'Bio/phenotype/phen_micro.py' adding 'Bio/phenotype/pm_fitting.py' adding 'BioSQL/BioSeq.py' adding 'BioSQL/BioSeqDatabase.py' adding 'BioSQL/DBUtils.py' adding 'BioSQL/Loader.py' adding 'BioSQL/__init__.py' adding 'BioSQL/py.typed' adding 'biopython-1.86.dist-info/LICENSE' adding 'biopython-1.86.dist-info/LICENSE.rst' adding 'biopython-1.86.dist-info/METADATA' adding 'biopython-1.86.dist-info/WHEEL' adding 'biopython-1.86.dist-info/top_level.txt' adding 'biopython-1.86.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Building wheel for biopython (pyproject.toml): finished with status 'done' Created wheel for biopython: filename=biopython-1.86-cp313-cp313-linux_x86_64.whl size=3177698 sha256=44d5bce428a31a027bb8a04ecff4183a8b06d0d5b1d4dc1247b8844dc9cf81d7 Stored in directory: /builddir/.cache/pip/wheels/24/68/b4/d14956a0fed423557c67188122805ebf841bb93b6d08395f77 Successfully built biopython + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.ikOhyq + umask 022 + cd /builddir/build/BUILD/python-biopython-1.86-build + '[' /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT ++ dirname /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT + mkdir -p /builddir/build/BUILD/python-biopython-1.86-build + mkdir /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd biopython-1.86 ++ xargs basename --multiple ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' ++ ls /builddir/build/BUILD/python-biopython-1.86-build/pyproject-wheeldir/biopython-1.86-cp313-cp313-linux_x86_64.whl + specifier=biopython==1.86 + '[' -z biopython==1.86 ']' + TMPDIR=/builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/python-biopython-1.86-build/pyproject-wheeldir biopython==1.86 Using pip 24.2 from /usr/lib/python3.13/site-packages/pip (python 3.13) Looking in links: /builddir/build/BUILD/python-biopython-1.86-build/pyproject-wheeldir Processing /builddir/build/BUILD/python-biopython-1.86-build/pyproject-wheeldir/biopython-1.86-cp313-cp313-linux_x86_64.whl Installing collected packages: biopython Successfully installed biopython-1.86 + '[' -d /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/bin ']' + rm -f /builddir/build/BUILD/python-biopython-1.86-build/python-biopython-1.86-1.fc41.x86_64-pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib/python3.13/site-packages ']' + '[' /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib64/python3.13/site-packages '!=' /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib/python3.13/site-packages ']' + '[' -d /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib64/python3.13/site-packages ']' + site_dirs+=("/usr/lib64/python3.13/site-packages") + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT$site_dir/*.dist-info + echo '%ghost /usr/lib64/python3.13/site-packages/biopython-1.86.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib64/python3.13/site-packages/biopython-1.86.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT --record /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib64/python3.13/site-packages/biopython-1.86.dist-info/RECORD --output /builddir/build/BUILD/python-biopython-1.86-build/python-biopython-1.86-1.fc41.x86_64-pyproject-record + rm -fv /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib64/python3.13/site-packages/biopython-1.86.dist-info/RECORD removed '/builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib64/python3.13/site-packages/biopython-1.86.dist-info/RECORD' + rm -fv /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib64/python3.13/site-packages/biopython-1.86.dist-info/REQUESTED removed '/builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib64/python3.13/site-packages/biopython-1.86.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/python-biopython-1.86-build/python-biopython-1.86-1.fc41.x86_64-pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + RPM_FILES_ESCAPE=4.19 + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/python-biopython-1.86-build/python-biopython-1.86-1.fc41.x86_64-pyproject-files --output-modules /builddir/build/BUILD/python-biopython-1.86-build/python-biopython-1.86-1.fc41.x86_64-pyproject-modules --buildroot /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT --sitelib /usr/lib/python3.13/site-packages --sitearch /usr/lib64/python3.13/site-packages --python-version 3.13 --pyproject-record /builddir/build/BUILD/python-biopython-1.86-build/python-biopython-1.86-1.fc41.x86_64-pyproject-record --prefix /usr '*' +auto + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 1.86-1.fc41 --unique-debug-suffix -1.86-1.fc41.x86_64 --unique-debug-src-base python-biopython-1.86-1.fc41.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/python-biopython-1.86-build/biopython-1.86 find-debuginfo: starting Extracting debug info from 13 files DWARF-compressing 13 files sepdebugcrcfix: Updated 13 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/python-biopython-1.86-1.fc41.x86_64 find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib/debug/usr/lib64/python3.13 using python3.13 Bytecompiling .py files below /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib64/python3.13 using python3.13 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j2 /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib64/python3.13/site-packages/BioSQL/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib64/python3.13/site-packages/BioSQL/__pycache__/Loader.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib64/python3.13/site-packages/BioSQL/__pycache__/DBUtils.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib64/python3.13/site-packages/BioSQL/__pycache__/BioSeqDatabase.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib64/python3.13/site-packages/BioSQL/__pycache__/BioSeq.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib64/python3.13/site-packages/Bio/__pycache__/pairwise2.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib64/python3.13/site-packages/Bio/__pycache__/pairwise2.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib64/python3.13/site-packages/Bio/__pycache__/_utils.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib64/python3.13/site-packages/Bio/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib64/python3.13/site-packages/Bio/__pycache__/bgzf.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib64/python3.13/site-packages/Bio/__pycache__/SeqFeature.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib64/python3.13/site-packages/Bio/__pycache__/SeqRecord.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib64/python3.13/site-packages/Bio/__pycache__/SeqFeature.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib64/python3.13/site-packages/Bio/__pycache__/Seq.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib64/python3.13/site-packages/Bio/__pycache__/File.cpython-313.opt-1.pyc: replacing with normalized version 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405 modified (214 replaced + 191 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/python-biopython-1.86-build/SPECPARTS/rpm-debuginfo.specpart Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.3m8OVT + umask 022 + cd /builddir/build/BUILD/python-biopython-1.86-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd biopython-1.86 ++ cat /builddir/build/BUILD/python-biopython-1.86-build/python-biopython-1.86-1.fc41.x86_64-pyproject-modules + '[' -z 'Bio Bio.Affy Bio.Affy.CelFile Bio.Align Bio.Align.AlignInfo Bio.Align.a2m Bio.Align.analysis Bio.Align.bed Bio.Align.bigbed Bio.Align.bigmaf Bio.Align.bigpsl Bio.Align.chain Bio.Align.clustal Bio.Align.emboss Bio.Align.exonerate Bio.Align.fasta Bio.Align.hhr Bio.Align.interfaces Bio.Align.maf Bio.Align.mauve Bio.Align.msf Bio.Align.nexus Bio.Align.phylip Bio.Align.psl Bio.Align.sam Bio.Align.stockholm Bio.Align.substitution_matrices Bio.Align.tabular Bio.AlignIO Bio.AlignIO.ClustalIO Bio.AlignIO.EmbossIO Bio.AlignIO.FastaIO Bio.AlignIO.Interfaces Bio.AlignIO.MafIO Bio.AlignIO.MauveIO Bio.AlignIO.MsfIO Bio.AlignIO.NexusIO Bio.AlignIO.PhylipIO Bio.AlignIO.StockholmIO Bio.Alphabet Bio.Blast Bio.Blast.NCBIWWW Bio.Blast.NCBIXML Bio.CAPS Bio.Cluster Bio.Compass Bio.Data Bio.Data.CodonTable Bio.Data.IUPACData Bio.Data.PDBData Bio.Emboss Bio.Emboss.Primer3 Bio.Emboss.PrimerSearch Bio.Entrez Bio.Entrez.Parser Bio.ExPASy Bio.ExPASy.Enzyme Bio.ExPASy.Prodoc Bio.ExPASy.Prosite Bio.ExPASy.ScanProsite Bio.ExPASy.cellosaurus Bio.File Bio.GenBank Bio.GenBank.Record Bio.GenBank.Scanner Bio.GenBank.utils Bio.Geo Bio.Geo.Record Bio.Graphics Bio.Graphics.BasicChromosome Bio.Graphics.ColorSpiral Bio.Graphics.Comparative Bio.Graphics.DisplayRepresentation Bio.Graphics.Distribution Bio.Graphics.GenomeDiagram Bio.Graphics.KGML_vis Bio.HMM Bio.KEGG Bio.KEGG.Compound Bio.KEGG.Enzyme Bio.KEGG.Gene Bio.KEGG.KGML Bio.KEGG.KGML.KGML_parser Bio.KEGG.KGML.KGML_pathway Bio.KEGG.Map Bio.KEGG.REST Bio.Medline Bio.NMR Bio.NMR.NOEtools Bio.NMR.xpktools Bio.Nexus Bio.Nexus.Nexus Bio.Nexus.Nodes Bio.Nexus.StandardData Bio.Nexus.Trees Bio.Nexus.cnexus Bio.PDB Bio.PDB.AbstractPropertyMap Bio.PDB.Atom Bio.PDB.Chain Bio.PDB.DSSP Bio.PDB.Dice Bio.PDB.Entity Bio.PDB.FragmentMapper Bio.PDB.HSExposure Bio.PDB.MMCIF2Dict Bio.PDB.MMCIFParser Bio.PDB.Model Bio.PDB.NACCESS Bio.PDB.NeighborSearch Bio.PDB.PDBExceptions Bio.PDB.PDBIO Bio.PDB.PDBList Bio.PDB.PDBMLParser Bio.PDB.PDBParser Bio.PDB.PICIO Bio.PDB.PSEA Bio.PDB.Polypeptide Bio.PDB.Residue Bio.PDB.ResidueDepth Bio.PDB.SASA Bio.PDB.SCADIO Bio.PDB.Selection Bio.PDB.Structure Bio.PDB.StructureAlignment Bio.PDB.StructureBuilder Bio.PDB.Superimposer Bio.PDB.alphafold_db Bio.PDB.binary_cif Bio.PDB.ccealign Bio.PDB.cealign Bio.PDB.ic_data Bio.PDB.ic_rebuild Bio.PDB.internal_coords Bio.PDB.kdtrees Bio.PDB.mmcifio Bio.PDB.mmtf Bio.PDB.mmtf.DefaultParser Bio.PDB.mmtf.mmtfio Bio.PDB.parse_pdb_header Bio.PDB.qcprot Bio.PDB.vectors Bio.Pathway Bio.Pathway.Rep Bio.Pathway.Rep.Graph Bio.Pathway.Rep.MultiGraph Bio.Phylo Bio.Phylo.BaseTree Bio.Phylo.CDAO Bio.Phylo.CDAOIO Bio.Phylo.Consensus Bio.Phylo.NeXML Bio.Phylo.NeXMLIO Bio.Phylo.Newick Bio.Phylo.NewickIO Bio.Phylo.NexusIO Bio.Phylo.PAML Bio.Phylo.PAML.baseml Bio.Phylo.PAML.chi2 Bio.Phylo.PAML.codeml Bio.Phylo.PAML.yn00 Bio.Phylo.PhyloXML Bio.Phylo.PhyloXMLIO Bio.Phylo.TreeConstruction Bio.PopGen Bio.PopGen.GenePop Bio.PopGen.GenePop.FileParser Bio.PopGen.GenePop.LargeFileParser Bio.Restriction Bio.Restriction.PrintFormat Bio.Restriction.Restriction Bio.Restriction.Restriction_Dictionary Bio.SCOP Bio.SCOP.Cla Bio.SCOP.Des Bio.SCOP.Dom Bio.SCOP.Hie Bio.SCOP.Raf Bio.SCOP.Residues Bio.SVDSuperimposer Bio.SearchIO Bio.SearchIO.BlastIO Bio.SearchIO.BlastIO.blast_tab Bio.SearchIO.BlastIO.blast_xml Bio.SearchIO.BlatIO Bio.SearchIO.ExonerateIO Bio.SearchIO.ExonerateIO.exonerate_cigar Bio.SearchIO.ExonerateIO.exonerate_text Bio.SearchIO.ExonerateIO.exonerate_vulgar Bio.SearchIO.FastaIO Bio.SearchIO.HHsuiteIO Bio.SearchIO.HHsuiteIO.hhsuite2_text Bio.SearchIO.HmmerIO Bio.SearchIO.HmmerIO.hmmer2_text Bio.SearchIO.HmmerIO.hmmer3_domtab Bio.SearchIO.HmmerIO.hmmer3_tab Bio.SearchIO.HmmerIO.hmmer3_text Bio.SearchIO.InfernalIO Bio.SearchIO.InfernalIO.infernal_tab Bio.SearchIO.InfernalIO.infernal_text Bio.SearchIO.InterproscanIO Bio.SearchIO.InterproscanIO.interproscan_xml Bio.Seq Bio.SeqFeature Bio.SeqIO Bio.SeqIO.AbiIO Bio.SeqIO.AceIO Bio.SeqIO.FastaIO Bio.SeqIO.GckIO Bio.SeqIO.GfaIO Bio.SeqIO.IgIO Bio.SeqIO.InsdcIO Bio.SeqIO.Interfaces Bio.SeqIO.NibIO Bio.SeqIO.PdbIO Bio.SeqIO.PhdIO Bio.SeqIO.PirIO Bio.SeqIO.QualityIO Bio.SeqIO.SeqXmlIO Bio.SeqIO.SffIO Bio.SeqIO.SnapGeneIO Bio.SeqIO.SwissIO Bio.SeqIO.TabIO Bio.SeqIO.TwoBitIO Bio.SeqIO.UniprotIO Bio.SeqIO.XdnaIO Bio.SeqRecord Bio.SeqUtils Bio.SeqUtils.CheckSum Bio.SeqUtils.IsoelectricPoint Bio.SeqUtils.MeltingTemp Bio.SeqUtils.ProtParam Bio.SeqUtils.ProtParamData Bio.SeqUtils.lcc Bio.Sequencing Bio.Sequencing.Ace Bio.Sequencing.Phd Bio.SwissProt Bio.SwissProt.KeyWList Bio.TogoWS Bio.UniGene Bio.UniProt Bio.UniProt.GOA Bio.bgzf Bio.codonalign Bio.codonalign.codonalignment Bio.codonalign.codonseq Bio.cpairwise2 Bio.motifs Bio.motifs.alignace Bio.motifs.clusterbuster Bio.motifs.jaspar Bio.motifs.jaspar.db Bio.motifs.mast Bio.motifs.matrix Bio.motifs.meme Bio.motifs.minimal Bio.motifs.pfm Bio.motifs.thresholds Bio.motifs.transfac Bio.motifs.xms Bio.pairwise2 Bio.phenotype Bio.phenotype.phen_micro Bio.phenotype.pm_fitting BioSQL BioSQL.BioSeq BioSQL.BioSeqDatabase BioSQL.DBUtils BioSQL.Loader' ']' + '[' '!' -f /builddir/build/BUILD/python-biopython-1.86-build/python-biopython-1.86-1.fc41.x86_64-pyproject-modules ']' + PATH=/builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib64/python3.13/site-packages:/builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib/python3.13/site-packages + _PYTHONSITE=/builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib64/python3.13/site-packages:/builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib/python3.13/site-packages + PYTHONDONTWRITEBYTECODE=1 + /usr/bin/python3 -sP /usr/lib/rpm/redhat/import_all_modules.py -f /builddir/build/BUILD/python-biopython-1.86-build/python-biopython-1.86-1.fc41.x86_64-pyproject-modules -t Check import: Bio Check import: BioSQL + RPM_EC=0 ++ jobs -p + exit 0 Processing files: python3-biopython-1.86-1.fc41.x86_64 Provides: python-biopython = 1.86-1.fc41 python3-biopython = 1.86-1.fc41 python3-biopython(x86-64) = 1.86-1.fc41 python3.13-biopython = 1.86-1.fc41 python3.13dist(biopython) = 1.86 python3dist(biopython) = 1.86 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) python(abi) = 3.13 python3.13dist(numpy) rtld(GNU_HASH) Processing files: python-biopython-debugsource-1.86-1.fc41.x86_64 Provides: python-biopython-debugsource = 1.86-1.fc41 python-biopython-debugsource(x86-64) = 1.86-1.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: python3-biopython-debuginfo-1.86-1.fc41.x86_64 Provides: debuginfo(build-id) = 14e974e10ad1b03f3ee9b6ffad14649ff1e3972e debuginfo(build-id) = 3ebe2ea390ad59760446df921ca22dce8c481843 debuginfo(build-id) = 42eed3c3b1aa26e2f2ec455dd9d6d751347e6376 debuginfo(build-id) = 749b4da8a1bccc7a84283daa4d993fa5af4595f9 debuginfo(build-id) = 87c8e4f423c584abbf94cc79ae813183d23a69c5 debuginfo(build-id) = a2f0d927487e2e28fae1897821f3a7cd87779d0a debuginfo(build-id) = a6af09686000757e6a7f70ecf62d75b87ce62ca9 debuginfo(build-id) = bc186856e3db60fa1abac49e565961fc152abd20 debuginfo(build-id) = beda5a8ea8290745ba6c3b757abf59064ad12b12 debuginfo(build-id) = cacd3e23ec2f268db7b94fcdad221da7a4c8482e debuginfo(build-id) = f0280787a962677cf63cc47f0f1e7117e36f8bf0 debuginfo(build-id) = faa6641e144c8d4f0371b2523c13fddfcb669e09 debuginfo(build-id) = fb93a8b5c87761cf444cbc648b6cf813ae4c7e95 python-biopython-debuginfo = 1.86-1.fc41 python3-biopython-debuginfo = 1.86-1.fc41 python3-biopython-debuginfo(x86-64) = 1.86-1.fc41 python3.13-biopython-debuginfo = 1.86-1.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: python-biopython-debugsource(x86-64) = 1.86-1.fc41 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT Wrote: /builddir/build/SRPMS/python-biopython-1.86-1.fc41.src.rpm Wrote: /builddir/build/RPMS/python3-biopython-debuginfo-1.86-1.fc41.x86_64.rpm Wrote: /builddir/build/RPMS/python-biopython-debugsource-1.86-1.fc41.x86_64.rpm Wrote: /builddir/build/RPMS/python3-biopython-1.86-1.fc41.x86_64.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.CSEvEa + umask 022 + cd /builddir/build/BUILD/python-biopython-1.86-build + test -d /builddir/build/BUILD/python-biopython-1.86-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/python-biopython-1.86-build + rm -rf /builddir/build/BUILD/python-biopython-1.86-build + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild python-biopython-1.86-1.fc41.src.rpm Finish: build phase for python-biopython-1.86-1.fc41.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-41-x86_64-1761692841.236821/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names INFO: Done(/var/lib/copr-rpmbuild/results/python-biopython-1.86-1.fc41.src.rpm) Config(child) 1 minutes 16 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "python-biopython-debugsource", "epoch": null, "version": "1.86", "release": "1.fc41", "arch": "x86_64" }, { "name": "python3-biopython-debuginfo", "epoch": null, "version": "1.86", "release": "1.fc41", "arch": "x86_64" }, { "name": "python3-biopython", "epoch": null, "version": "1.86", "release": "1.fc41", "arch": "x86_64" }, { "name": "python-biopython", "epoch": null, "version": "1.86", "release": "1.fc41", "arch": "src" } ] } RPMResults finished