Warning: Permanently added '100.26.109.46' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/9741508-fedora-42-x86_64 --chroot fedora-42-x86_64 Version: 1.6 PID: 8639 Logging PID: 8641 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'build_id': 9741508, 'buildroot_pkgs': [], 'chroot': 'fedora-42-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '707dfd02b65410a50a3f48e8aa906a8941f3e253', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/@copr/PyPI/python-biopython', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'python-biopython', 'package_version': '1.86-1', 'project_dirname': 'PyPI', 'project_name': 'PyPI', 'project_owner': '@copr', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/@copr/PyPI/fedora-42-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': '@copr/PyPI--ksurma', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': None, 'submitter': 'ksurma', 'tags': [], 'task_id': '9741508-fedora-42-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/@copr/PyPI/python-biopython /var/lib/copr-rpmbuild/workspace/workdir-uuhqn6_2/python-biopython --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/@copr/PyPI/python-biopython', '/var/lib/copr-rpmbuild/workspace/workdir-uuhqn6_2/python-biopython', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-uuhqn6_2/python-biopython'... Running: git checkout 707dfd02b65410a50a3f48e8aa906a8941f3e253 -- cmd: ['git', 'checkout', '707dfd02b65410a50a3f48e8aa906a8941f3e253', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-uuhqn6_2/python-biopython rc: 0 stdout: stderr: Note: switching to '707dfd02b65410a50a3f48e8aa906a8941f3e253'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 707dfd0 automatic import of python-biopython Running: dist-git-client sources cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-uuhqn6_2/python-biopython rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading biopython-1.86.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o biopython-1.86.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/@copr/PyPI/python-biopython/biopython-1.86.tar.gz/md5/47ca510a7c46e6e42439112cf2cc24b3/biopython-1.86.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 18.9M 100 18.9M 0 0 378M 0 --:--:-- --:--:-- --:--:-- 386M INFO: Reading stdout from command: md5sum biopython-1.86.tar.gz tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-uuhqn6_2/python-biopython/python-biopython.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-uuhqn6_2/python-biopython --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1761692840.824553 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 6.5 starting (python version = 3.13.7, NVR = mock-6.5-1.fc42), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-uuhqn6_2/python-biopython/python-biopython.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-uuhqn6_2/python-biopython --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1761692840.824553 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-uuhqn6_2/python-biopython/python-biopython.spec) Config(fedora-42-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 6.5 INFO: Mock Version: 6.5 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-42-x86_64-bootstrap-1761692840.824553/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using container image: registry.fedoraproject.org/fedora:42 INFO: Pulling image: registry.fedoraproject.org/fedora:42 INFO: Tagging container image as mock-bootstrap-d47a07f5-dc2c-4f7f-b474-cd5fa070158b INFO: Checking that 8cf6221321bb1a61cdd4e2a51a7ea30589d82f85efffab5fbd8c952f46d36454 image matches host's architecture INFO: Copy content of container 8cf6221321bb1a61cdd4e2a51a7ea30589d82f85efffab5fbd8c952f46d36454 to /var/lib/mock/fedora-42-x86_64-bootstrap-1761692840.824553/root INFO: mounting 8cf6221321bb1a61cdd4e2a51a7ea30589d82f85efffab5fbd8c952f46d36454 with podman image mount INFO: image 8cf6221321bb1a61cdd4e2a51a7ea30589d82f85efffab5fbd8c952f46d36454 as /var/lib/containers/storage/overlay/1939596fe6b5ea1309e6f6b55b64ecd03edd43c88e70f71932c2d4cb6ffc583b/merged INFO: umounting image 8cf6221321bb1a61cdd4e2a51a7ea30589d82f85efffab5fbd8c952f46d36454 (/var/lib/containers/storage/overlay/1939596fe6b5ea1309e6f6b55b64ecd03edd43c88e70f71932c2d4cb6ffc583b/merged) with podman image umount INFO: Removing image mock-bootstrap-d47a07f5-dc2c-4f7f-b474-cd5fa070158b INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-42-x86_64-1761692840.824553/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.20.1-1.fc42.x86_64 rpm-sequoia-1.7.0-5.fc42.x86_64 dnf5-5.2.16.0-1.fc42.x86_64 dnf5-plugins-5.2.16.0-1.fc42.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: fedora 100% | 36.3 MiB/s | 35.4 MiB | 00m01s updates 100% | 27.7 MiB/s | 27.2 MiB | 00m01s Copr repository 100% | 44.4 MiB/s | 42.9 MiB | 00m01s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash x86_64 5.2.37-1.fc42 fedora 8.2 MiB bzip2 x86_64 1.0.8-20.fc42 fedora 99.3 KiB coreutils x86_64 9.6-6.fc42 updates 5.4 MiB cpio x86_64 2.15-4.fc42 fedora 1.1 MiB diffutils x86_64 3.12-1.fc42 updates 1.6 MiB fedora-release-common noarch 42-30 updates 20.2 KiB findutils x86_64 1:4.10.0-5.fc42 fedora 1.9 MiB gawk x86_64 5.3.1-1.fc42 fedora 1.7 MiB glibc-minimal-langpack x86_64 2.41-11.fc42 updates 0.0 B grep x86_64 3.11-10.fc42 fedora 1.0 MiB gzip x86_64 1.13-3.fc42 fedora 392.9 KiB info x86_64 7.2-3.fc42 fedora 357.9 KiB patch x86_64 2.8-1.fc42 updates 222.8 KiB redhat-rpm-config noarch 342-4.fc42 updates 185.5 KiB rpm-build x86_64 4.20.1-1.fc42 fedora 168.7 KiB sed x86_64 4.9-4.fc42 fedora 857.3 KiB shadow-utils x86_64 2:4.17.4-1.fc42 fedora 4.0 MiB tar x86_64 2:1.35-5.fc42 fedora 3.0 MiB unzip x86_64 6.0-66.fc42 fedora 390.3 KiB util-linux x86_64 2.40.4-7.fc42 fedora 3.4 MiB which x86_64 2.23-2.fc42 updates 83.5 KiB xz x86_64 1:5.8.1-2.fc42 updates 1.3 MiB Installing dependencies: add-determinism x86_64 0.6.0-1.fc42 fedora 2.5 MiB alternatives x86_64 1.33-1.fc42 updates 62.2 KiB ansible-srpm-macros noarch 1-17.1.fc42 fedora 35.7 KiB audit-libs x86_64 4.1.1-1.fc42 updates 378.8 KiB basesystem noarch 11-22.fc42 fedora 0.0 B binutils x86_64 2.44-6.fc42 updates 25.8 MiB build-reproducibility-srpm-macros noarch 0.6.0-1.fc42 fedora 735.0 B bzip2-libs x86_64 1.0.8-20.fc42 fedora 84.6 KiB ca-certificates noarch 2025.2.80_v9.0.304-1.0.fc42 updates 2.7 MiB coreutils-common x86_64 9.6-6.fc42 updates 11.1 MiB crypto-policies noarch 20250707-1.gitad370a8.fc42 updates 142.9 KiB curl x86_64 8.11.1-6.fc42 updates 450.6 KiB cyrus-sasl-lib x86_64 2.1.28-30.fc42 fedora 2.3 MiB debugedit x86_64 5.1-7.fc42 updates 192.7 KiB dwz x86_64 0.16-1.fc42 updates 287.1 KiB ed x86_64 1.21-2.fc42 fedora 146.5 KiB efi-srpm-macros noarch 6-3.fc42 updates 40.1 KiB elfutils x86_64 0.193-2.fc42 updates 2.9 MiB elfutils-debuginfod-client x86_64 0.193-2.fc42 updates 83.9 KiB elfutils-default-yama-scope noarch 0.193-2.fc42 updates 1.8 KiB elfutils-libelf x86_64 0.193-2.fc42 updates 1.2 MiB elfutils-libs x86_64 0.193-2.fc42 updates 683.4 KiB fedora-gpg-keys noarch 42-1 fedora 128.2 KiB fedora-release noarch 42-30 updates 0.0 B fedora-release-identity-basic noarch 42-30 updates 646.0 B fedora-repos noarch 42-1 fedora 4.9 KiB file x86_64 5.46-3.fc42 updates 100.2 KiB file-libs x86_64 5.46-3.fc42 updates 11.9 MiB filesystem x86_64 3.18-47.fc42 updates 112.0 B filesystem-srpm-macros noarch 3.18-47.fc42 updates 38.2 KiB fonts-srpm-macros noarch 1:2.0.5-22.fc42 updates 55.8 KiB forge-srpm-macros noarch 0.4.0-2.fc42 fedora 38.9 KiB fpc-srpm-macros noarch 1.3-14.fc42 fedora 144.0 B gdb-minimal x86_64 16.3-1.fc42 updates 13.2 MiB gdbm-libs x86_64 1:1.23-9.fc42 fedora 129.9 KiB ghc-srpm-macros noarch 1.9.2-2.fc42 fedora 779.0 B glibc x86_64 2.41-11.fc42 updates 6.6 MiB glibc-common x86_64 2.41-11.fc42 updates 1.0 MiB glibc-gconv-extra x86_64 2.41-11.fc42 updates 7.2 MiB gmp x86_64 1:6.3.0-4.fc42 fedora 811.3 KiB gnat-srpm-macros noarch 6-7.fc42 fedora 1.0 KiB gnulib-l10n noarch 20241231-1.fc42 updates 655.0 KiB go-srpm-macros noarch 3.8.0-1.fc42 updates 61.9 KiB jansson x86_64 2.14-2.fc42 fedora 93.1 KiB json-c x86_64 0.18-2.fc42 fedora 86.7 KiB kernel-srpm-macros noarch 1.0-25.fc42 fedora 1.9 KiB keyutils-libs x86_64 1.6.3-5.fc42 fedora 58.3 KiB krb5-libs x86_64 1.21.3-6.fc42 updates 2.3 MiB libacl x86_64 2.3.2-3.fc42 fedora 38.3 KiB libarchive x86_64 3.8.1-1.fc42 updates 955.2 KiB libattr x86_64 2.5.2-5.fc42 fedora 27.1 KiB libblkid x86_64 2.40.4-7.fc42 fedora 262.4 KiB libbrotli x86_64 1.1.0-6.fc42 fedora 841.3 KiB libcap x86_64 2.73-2.fc42 fedora 207.1 KiB libcap-ng x86_64 0.8.5-4.fc42 fedora 72.9 KiB libcom_err x86_64 1.47.2-3.fc42 fedora 67.1 KiB libcurl x86_64 8.11.1-6.fc42 updates 834.1 KiB libeconf x86_64 0.7.6-2.fc42 updates 64.6 KiB libevent x86_64 2.1.12-15.fc42 fedora 903.1 KiB libfdisk x86_64 2.40.4-7.fc42 fedora 372.3 KiB libffi x86_64 3.4.6-5.fc42 fedora 82.3 KiB libgcc x86_64 15.2.1-3.fc42 updates 266.6 KiB libgomp x86_64 15.2.1-3.fc42 updates 541.6 KiB libidn2 x86_64 2.3.8-1.fc42 fedora 556.5 KiB libmount x86_64 2.40.4-7.fc42 fedora 356.3 KiB libnghttp2 x86_64 1.64.0-3.fc42 fedora 170.4 KiB libpkgconf x86_64 2.3.0-2.fc42 fedora 78.1 KiB libpsl x86_64 0.21.5-5.fc42 fedora 76.4 KiB libselinux x86_64 3.8-3.fc42 updates 193.1 KiB libsemanage x86_64 3.8.1-2.fc42 updates 304.4 KiB libsepol x86_64 3.8-1.fc42 fedora 826.0 KiB libsmartcols x86_64 2.40.4-7.fc42 fedora 180.4 KiB libssh x86_64 0.11.3-1.fc42 updates 567.1 KiB libssh-config noarch 0.11.3-1.fc42 updates 277.0 B libstdc++ x86_64 15.2.1-3.fc42 updates 2.8 MiB libtasn1 x86_64 4.20.0-1.fc42 fedora 176.3 KiB libtool-ltdl x86_64 2.5.4-4.fc42 fedora 70.1 KiB libunistring x86_64 1.1-9.fc42 fedora 1.7 MiB libuuid x86_64 2.40.4-7.fc42 fedora 37.3 KiB libverto x86_64 0.3.2-10.fc42 fedora 25.4 KiB libxcrypt x86_64 4.4.38-7.fc42 updates 284.5 KiB libxml2 x86_64 2.12.10-1.fc42 fedora 1.7 MiB libzstd x86_64 1.5.7-1.fc42 fedora 807.8 KiB lua-libs x86_64 5.4.8-1.fc42 updates 280.8 KiB lua-srpm-macros noarch 1-15.fc42 fedora 1.3 KiB lz4-libs x86_64 1.10.0-2.fc42 fedora 157.4 KiB mpfr x86_64 4.2.2-1.fc42 fedora 828.8 KiB ncurses-base noarch 6.5-5.20250125.fc42 fedora 326.8 KiB ncurses-libs x86_64 6.5-5.20250125.fc42 fedora 946.3 KiB ocaml-srpm-macros noarch 10-4.fc42 fedora 1.9 KiB openblas-srpm-macros noarch 2-19.fc42 fedora 112.0 B openldap x86_64 2.6.10-1.fc42 updates 655.8 KiB openssl-libs x86_64 1:3.2.6-2.fc42 updates 7.8 MiB p11-kit x86_64 0.25.8-1.fc42 updates 2.3 MiB p11-kit-trust x86_64 0.25.8-1.fc42 updates 446.5 KiB package-notes-srpm-macros noarch 0.5-13.fc42 fedora 1.6 KiB pam-libs x86_64 1.7.0-6.fc42 updates 126.7 KiB pcre2 x86_64 10.46-1.fc42 updates 697.7 KiB pcre2-syntax noarch 10.46-1.fc42 updates 275.3 KiB perl-srpm-macros noarch 1-57.fc42 fedora 861.0 B pkgconf x86_64 2.3.0-2.fc42 fedora 88.5 KiB pkgconf-m4 noarch 2.3.0-2.fc42 fedora 14.4 KiB pkgconf-pkg-config x86_64 2.3.0-2.fc42 fedora 989.0 B popt x86_64 1.19-8.fc42 fedora 132.8 KiB publicsuffix-list-dafsa noarch 20250616-1.fc42 updates 69.1 KiB pyproject-srpm-macros noarch 1.18.4-1.fc42 updates 1.9 KiB python-srpm-macros noarch 3.13-5.fc42 updates 51.0 KiB qt5-srpm-macros noarch 5.15.17-1.fc42 updates 500.0 B qt6-srpm-macros noarch 6.9.2-1.fc42 updates 464.0 B readline x86_64 8.2-13.fc42 fedora 485.0 KiB rpm x86_64 4.20.1-1.fc42 fedora 3.1 MiB rpm-build-libs x86_64 4.20.1-1.fc42 fedora 206.6 KiB rpm-libs x86_64 4.20.1-1.fc42 fedora 721.8 KiB rpm-sequoia x86_64 1.7.0-5.fc42 fedora 2.4 MiB rust-srpm-macros noarch 26.4-1.fc42 updates 4.8 KiB setup noarch 2.15.0-13.fc42 fedora 720.9 KiB sqlite-libs x86_64 3.47.2-5.fc42 updates 1.5 MiB systemd-libs x86_64 257.10-1.fc42 updates 2.2 MiB systemd-standalone-sysusers x86_64 257.10-1.fc42 updates 277.3 KiB tree-sitter-srpm-macros noarch 0.1.0-8.fc42 fedora 6.5 KiB util-linux-core x86_64 2.40.4-7.fc42 fedora 1.4 MiB xxhash-libs x86_64 0.8.3-2.fc42 fedora 90.2 KiB xz-libs x86_64 1:5.8.1-2.fc42 updates 217.8 KiB zig-srpm-macros noarch 1-4.fc42 fedora 1.1 KiB zip x86_64 3.0-43.fc42 fedora 698.5 KiB zlib-ng-compat x86_64 2.2.5-2.fc42 updates 137.6 KiB zstd x86_64 1.5.7-1.fc42 fedora 1.7 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 149 packages Total size of inbound packages is 52 MiB. Need to download 52 MiB. After this operation, 178 MiB extra will be used (install 178 MiB, remove 0 B). [ 1/149] bzip2-0:1.0.8-20.fc42.x86_64 100% | 3.4 MiB/s | 52.1 KiB | 00m00s [ 2/149] cpio-0:2.15-4.fc42.x86_64 100% | 13.1 MiB/s | 294.6 KiB | 00m00s [ 3/149] findutils-1:4.10.0-5.fc42.x86 100% | 59.8 MiB/s | 551.5 KiB | 00m00s [ 4/149] bash-0:5.2.37-1.fc42.x86_64 100% | 62.3 MiB/s | 1.8 MiB | 00m00s [ 5/149] grep-0:3.11-10.fc42.x86_64 100% | 41.9 MiB/s | 300.1 KiB | 00m00s [ 6/149] gzip-0:1.13-3.fc42.x86_64 100% | 27.7 MiB/s | 170.4 KiB | 00m00s [ 7/149] info-0:7.2-3.fc42.x86_64 100% | 59.8 MiB/s | 183.8 KiB | 00m00s [ 8/149] rpm-build-0:4.20.1-1.fc42.x86 100% | 26.6 MiB/s | 81.8 KiB | 00m00s [ 9/149] sed-0:4.9-4.fc42.x86_64 100% | 103.3 MiB/s | 317.3 KiB | 00m00s [ 10/149] tar-2:1.35-5.fc42.x86_64 100% | 140.4 MiB/s | 862.5 KiB | 00m00s [ 11/149] shadow-utils-2:4.17.4-1.fc42. 100% | 165.3 MiB/s | 1.3 MiB | 00m00s [ 12/149] unzip-0:6.0-66.fc42.x86_64 100% | 30.0 MiB/s | 184.6 KiB | 00m00s [ 13/149] coreutils-0:9.6-6.fc42.x86_64 100% | 189.7 MiB/s | 1.1 MiB | 00m00s [ 14/149] fedora-release-common-0:42-30 100% | 6.0 MiB/s | 24.5 KiB | 00m00s [ 15/149] diffutils-0:3.12-1.fc42.x86_6 100% | 63.9 MiB/s | 392.6 KiB | 00m00s [ 16/149] glibc-minimal-langpack-0:2.41 100% | 19.3 MiB/s | 98.7 KiB | 00m00s [ 17/149] gawk-0:5.3.1-1.fc42.x86_64 100% | 134.9 MiB/s | 1.1 MiB | 00m00s [ 18/149] patch-0:2.8-1.fc42.x86_64 100% | 15.8 MiB/s | 113.5 KiB | 00m00s [ 19/149] redhat-rpm-config-0:342-4.fc4 100% | 19.8 MiB/s | 81.1 KiB | 00m00s [ 20/149] which-0:2.23-2.fc42.x86_64 100% | 13.6 MiB/s | 41.7 KiB | 00m00s [ 21/149] util-linux-0:2.40.4-7.fc42.x8 100% | 144.3 MiB/s | 1.2 MiB | 00m00s [ 22/149] xz-1:5.8.1-2.fc42.x86_64 100% | 69.9 MiB/s | 572.6 KiB | 00m00s [ 23/149] ncurses-libs-0:6.5-5.20250125 100% | 46.7 MiB/s | 335.0 KiB | 00m00s [ 24/149] bzip2-libs-0:1.0.8-20.fc42.x8 100% | 14.2 MiB/s | 43.6 KiB | 00m00s [ 25/149] popt-0:1.19-8.fc42.x86_64 100% | 21.5 MiB/s | 65.9 KiB | 00m00s [ 26/149] readline-0:8.2-13.fc42.x86_64 100% | 52.5 MiB/s | 215.2 KiB | 00m00s [ 27/149] rpm-0:4.20.1-1.fc42.x86_64 100% | 107.1 MiB/s | 548.4 KiB | 00m00s [ 28/149] rpm-build-libs-0:4.20.1-1.fc4 100% | 19.5 MiB/s | 99.7 KiB | 00m00s [ 29/149] rpm-libs-0:4.20.1-1.fc42.x86_ 100% | 60.9 MiB/s | 312.0 KiB | 00m00s [ 30/149] libacl-0:2.3.2-3.fc42.x86_64 100% | 11.2 MiB/s | 23.0 KiB | 00m00s [ 31/149] zstd-0:1.5.7-1.fc42.x86_64 100% | 94.9 MiB/s | 485.9 KiB | 00m00s [ 32/149] setup-0:2.15.0-13.fc42.noarch 100% | 38.0 MiB/s | 155.8 KiB | 00m00s [ 33/149] gmp-1:6.3.0-4.fc42.x86_64 100% | 77.6 MiB/s | 317.7 KiB | 00m00s [ 34/149] libattr-0:2.5.2-5.fc42.x86_64 100% | 4.2 MiB/s | 17.1 KiB | 00m00s [ 35/149] libcap-0:2.73-2.fc42.x86_64 100% | 16.5 MiB/s | 84.3 KiB | 00m00s [ 36/149] fedora-repos-0:42-1.noarch 100% | 2.3 MiB/s | 9.2 KiB | 00m00s [ 37/149] mpfr-0:4.2.2-1.fc42.x86_64 100% | 48.2 MiB/s | 345.3 KiB | 00m00s [ 38/149] glibc-common-0:2.41-11.fc42.x 100% | 62.8 MiB/s | 385.6 KiB | 00m00s [ 39/149] coreutils-common-0:9.6-6.fc42 100% | 148.8 MiB/s | 2.1 MiB | 00m00s [ 40/149] ansible-srpm-macros-0:1-17.1. 100% | 6.6 MiB/s | 20.3 KiB | 00m00s [ 41/149] ed-0:1.21-2.fc42.x86_64 100% | 20.0 MiB/s | 82.0 KiB | 00m00s [ 42/149] build-reproducibility-srpm-ma 100% | 11.4 MiB/s | 11.7 KiB | 00m00s [ 43/149] forge-srpm-macros-0:0.4.0-2.f 100% | 9.7 MiB/s | 19.9 KiB | 00m00s [ 44/149] fpc-srpm-macros-0:1.3-14.fc42 100% | 3.9 MiB/s | 8.0 KiB | 00m00s [ 45/149] ghc-srpm-macros-0:1.9.2-2.fc4 100% | 4.5 MiB/s | 9.2 KiB | 00m00s [ 46/149] kernel-srpm-macros-0:1.0-25.f 100% | 4.8 MiB/s | 9.9 KiB | 00m00s [ 47/149] gnat-srpm-macros-0:6-7.fc42.n 100% | 2.8 MiB/s | 8.6 KiB | 00m00s [ 48/149] lua-srpm-macros-0:1-15.fc42.n 100% | 4.4 MiB/s | 8.9 KiB | 00m00s [ 49/149] openblas-srpm-macros-0:2-19.f 100% | 2.5 MiB/s | 7.8 KiB | 00m00s [ 50/149] ocaml-srpm-macros-0:10-4.fc42 100% | 2.2 MiB/s | 9.2 KiB | 00m00s [ 51/149] package-notes-srpm-macros-0:0 100% | 2.3 MiB/s | 9.3 KiB | 00m00s [ 52/149] perl-srpm-macros-0:1-57.fc42. 100% | 4.2 MiB/s | 8.5 KiB | 00m00s [ 53/149] tree-sitter-srpm-macros-0:0.1 100% | 3.7 MiB/s | 11.2 KiB | 00m00s [ 54/149] zig-srpm-macros-0:1-4.fc42.no 100% | 2.7 MiB/s | 8.2 KiB | 00m00s [ 55/149] libcap-ng-0:0.8.5-4.fc42.x86_ 100% | 15.7 MiB/s | 32.2 KiB | 00m00s [ 56/149] zip-0:3.0-43.fc42.x86_64 100% | 51.5 MiB/s | 263.5 KiB | 00m00s [ 57/149] libblkid-0:2.40.4-7.fc42.x86_ 100% | 29.9 MiB/s | 122.5 KiB | 00m00s [ 58/149] libfdisk-0:2.40.4-7.fc42.x86_ 100% | 38.7 MiB/s | 158.5 KiB | 00m00s [ 59/149] libmount-0:2.40.4-7.fc42.x86_ 100% | 30.3 MiB/s | 155.1 KiB | 00m00s [ 60/149] libsmartcols-0:2.40.4-7.fc42. 100% | 13.2 MiB/s | 81.2 KiB | 00m00s [ 61/149] libuuid-0:2.40.4-7.fc42.x86_6 100% | 12.4 MiB/s | 25.3 KiB | 00m00s [ 62/149] xz-libs-1:5.8.1-2.fc42.x86_64 100% | 36.8 MiB/s | 113.0 KiB | 00m00s [ 63/149] util-linux-core-0:2.40.4-7.fc 100% | 86.1 MiB/s | 529.2 KiB | 00m00s [ 64/149] ncurses-base-0:6.5-5.20250125 100% | 17.2 MiB/s | 88.1 KiB | 00m00s [ 65/149] libzstd-0:1.5.7-1.fc42.x86_64 100% | 61.5 MiB/s | 314.8 KiB | 00m00s [ 66/149] lz4-libs-0:1.10.0-2.fc42.x86_ 100% | 19.1 MiB/s | 78.1 KiB | 00m00s [ 67/149] rpm-sequoia-0:1.7.0-5.fc42.x8 100% | 98.9 MiB/s | 911.1 KiB | 00m00s [ 68/149] fedora-gpg-keys-0:42-1.noarch 100% | 26.5 MiB/s | 135.6 KiB | 00m00s [ 69/149] gnulib-l10n-0:20241231-1.fc42 100% | 18.3 MiB/s | 150.1 KiB | 00m00s [ 70/149] add-determinism-0:0.6.0-1.fc4 100% | 112.1 MiB/s | 918.3 KiB | 00m00s [ 71/149] glibc-gconv-extra-0:2.41-11.f 100% | 126.3 MiB/s | 1.6 MiB | 00m00s [ 72/149] basesystem-0:11-22.fc42.noarc 100% | 1.0 MiB/s | 7.3 KiB | 00m00s [ 73/149] glibc-0:2.41-11.fc42.x86_64 100% | 118.2 MiB/s | 2.2 MiB | 00m00s [ 74/149] efi-srpm-macros-0:6-3.fc42.no 100% | 5.5 MiB/s | 22.5 KiB | 00m00s [ 75/149] dwz-0:0.16-1.fc42.x86_64 100% | 22.1 MiB/s | 135.5 KiB | 00m00s [ 76/149] file-0:5.46-3.fc42.x86_64 100% | 15.8 MiB/s | 48.6 KiB | 00m00s [ 77/149] filesystem-srpm-macros-0:3.18 100% | 12.7 MiB/s | 26.1 KiB | 00m00s [ 78/149] file-libs-0:5.46-3.fc42.x86_6 100% | 138.3 MiB/s | 849.5 KiB | 00m00s [ 79/149] go-srpm-macros-0:3.8.0-1.fc42 100% | 9.2 MiB/s | 28.3 KiB | 00m00s [ 80/149] fonts-srpm-macros-1:2.0.5-22. 100% | 8.9 MiB/s | 27.2 KiB | 00m00s [ 81/149] qt5-srpm-macros-0:5.15.17-1.f 100% | 2.8 MiB/s | 8.7 KiB | 00m00s [ 82/149] python-srpm-macros-0:3.13-5.f 100% | 7.3 MiB/s | 22.5 KiB | 00m00s [ 83/149] pyproject-srpm-macros-0:1.18. 100% | 4.5 MiB/s | 13.7 KiB | 00m00s [ 84/149] qt6-srpm-macros-0:6.9.2-1.fc4 100% | 4.6 MiB/s | 9.4 KiB | 00m00s [ 85/149] rust-srpm-macros-0:26.4-1.fc4 100% | 5.5 MiB/s | 11.2 KiB | 00m00s [ 86/149] filesystem-0:3.18-47.fc42.x86 100% | 190.5 MiB/s | 1.3 MiB | 00m00s [ 87/149] zlib-ng-compat-0:2.2.5-2.fc42 100% | 15.5 MiB/s | 79.2 KiB | 00m00s [ 88/149] libgcc-0:15.2.1-3.fc42.x86_64 100% | 26.1 MiB/s | 133.6 KiB | 00m00s [ 89/149] elfutils-libelf-0:0.193-2.fc4 100% | 67.6 MiB/s | 207.8 KiB | 00m00s [ 90/149] elfutils-libs-0:0.193-2.fc42. 100% | 66.0 MiB/s | 270.2 KiB | 00m00s [ 91/149] elfutils-0:0.193-2.fc42.x86_6 100% | 111.6 MiB/s | 571.4 KiB | 00m00s [ 92/149] elfutils-debuginfod-client-0: 100% | 15.3 MiB/s | 46.9 KiB | 00m00s [ 93/149] json-c-0:0.18-2.fc42.x86_64 100% | 14.6 MiB/s | 44.9 KiB | 00m00s [ 94/149] libselinux-0:3.8-3.fc42.x86_6 100% | 31.5 MiB/s | 96.7 KiB | 00m00s [ 95/149] libsepol-0:3.8-1.fc42.x86_64 100% | 85.2 MiB/s | 348.9 KiB | 00m00s [ 96/149] systemd-libs-0:257.10-1.fc42. 100% | 79.1 MiB/s | 809.6 KiB | 00m00s [ 97/149] libstdc++-0:15.2.1-3.fc42.x86 100% | 74.9 MiB/s | 919.8 KiB | 00m00s [ 98/149] openssl-libs-1:3.2.6-2.fc42.x 100% | 129.7 MiB/s | 2.3 MiB | 00m00s [ 99/149] libxcrypt-0:4.4.38-7.fc42.x86 100% | 20.7 MiB/s | 127.2 KiB | 00m00s [100/149] audit-libs-0:4.1.1-1.fc42.x86 100% | 33.8 MiB/s | 138.5 KiB | 00m00s [101/149] pam-libs-0:1.7.0-6.fc42.x86_6 100% | 18.7 MiB/s | 57.5 KiB | 00m00s [102/149] libeconf-0:0.7.6-2.fc42.x86_6 100% | 17.2 MiB/s | 35.2 KiB | 00m00s [103/149] libsemanage-0:3.8.1-2.fc42.x8 100% | 40.1 MiB/s | 123.2 KiB | 00m00s [104/149] lua-libs-0:5.4.8-1.fc42.x86_6 100% | 32.2 MiB/s | 131.9 KiB | 00m00s [105/149] sqlite-libs-0:3.47.2-5.fc42.x 100% | 122.7 MiB/s | 753.8 KiB | 00m00s [106/149] libgomp-0:15.2.1-3.fc42.x86_6 100% | 60.9 MiB/s | 374.0 KiB | 00m00s [107/149] jansson-0:2.14-2.fc42.x86_64 100% | 11.2 MiB/s | 45.7 KiB | 00m00s [108/149] debugedit-0:5.1-7.fc42.x86_64 100% | 12.8 MiB/s | 78.8 KiB | 00m00s [109/149] libarchive-0:3.8.1-1.fc42.x86 100% | 37.4 MiB/s | 421.6 KiB | 00m00s [110/149] libxml2-0:2.12.10-1.fc42.x86_ 100% | 55.6 MiB/s | 683.7 KiB | 00m00s [111/149] pkgconf-pkg-config-0:2.3.0-2. 100% | 1.4 MiB/s | 9.9 KiB | 00m00s [112/149] pkgconf-0:2.3.0-2.fc42.x86_64 100% | 8.8 MiB/s | 44.9 KiB | 00m00s [113/149] pkgconf-m4-0:2.3.0-2.fc42.noa 100% | 2.3 MiB/s | 14.2 KiB | 00m00s [114/149] libpkgconf-0:2.3.0-2.fc42.x86 100% | 5.4 MiB/s | 38.4 KiB | 00m00s [115/149] binutils-0:2.44-6.fc42.x86_64 100% | 137.4 MiB/s | 5.8 MiB | 00m00s [116/149] curl-0:8.11.1-6.fc42.x86_64 100% | 19.5 MiB/s | 220.0 KiB | 00m00s [117/149] pcre2-0:10.46-1.fc42.x86_64 100% | 32.0 MiB/s | 262.2 KiB | 00m00s [118/149] pcre2-syntax-0:10.46-1.fc42.n 100% | 39.6 MiB/s | 162.0 KiB | 00m00s [119/149] ca-certificates-0:2025.2.80_v 100% | 190.1 MiB/s | 973.5 KiB | 00m00s [120/149] crypto-policies-0:20250707-1. 100% | 18.7 MiB/s | 96.0 KiB | 00m00s [121/149] elfutils-default-yama-scope-0 100% | 3.1 MiB/s | 12.6 KiB | 00m00s [122/149] libffi-0:3.4.6-5.fc42.x86_64 100% | 13.0 MiB/s | 39.9 KiB | 00m00s [123/149] p11-kit-0:0.25.8-1.fc42.x86_6 100% | 98.3 MiB/s | 503.5 KiB | 00m00s [124/149] libtasn1-0:4.20.0-1.fc42.x86_ 100% | 18.3 MiB/s | 75.0 KiB | 00m00s [125/149] p11-kit-trust-0:0.25.8-1.fc42 100% | 34.0 MiB/s | 139.2 KiB | 00m00s [126/149] fedora-release-0:42-30.noarch 100% | 6.6 MiB/s | 13.5 KiB | 00m00s [127/149] alternatives-0:1.33-1.fc42.x8 100% | 13.2 MiB/s | 40.5 KiB | 00m00s [128/149] libcurl-0:8.11.1-6.fc42.x86_6 100% | 72.6 MiB/s | 371.7 KiB | 00m00s [129/149] libbrotli-0:1.1.0-6.fc42.x86_ 100% | 55.3 MiB/s | 339.8 KiB | 00m00s [130/149] fedora-release-identity-basic 100% | 2.0 MiB/s | 14.3 KiB | 00m00s [131/149] libidn2-0:2.3.8-1.fc42.x86_64 100% | 56.9 MiB/s | 174.8 KiB | 00m00s [132/149] libnghttp2-0:1.64.0-3.fc42.x8 100% | 25.3 MiB/s | 77.7 KiB | 00m00s [133/149] libpsl-0:0.21.5-5.fc42.x86_64 100% | 20.8 MiB/s | 64.0 KiB | 00m00s [134/149] libssh-0:0.11.3-1.fc42.x86_64 100% | 56.9 MiB/s | 233.0 KiB | 00m00s [135/149] libssh-config-0:0.11.3-1.fc42 100% | 1.3 MiB/s | 9.1 KiB | 00m00s [136/149] libunistring-0:1.1-9.fc42.x86 100% | 48.2 MiB/s | 542.5 KiB | 00m00s [137/149] xxhash-libs-0:0.8.3-2.fc42.x8 100% | 6.4 MiB/s | 39.1 KiB | 00m00s [138/149] systemd-standalone-sysusers-0 100% | 25.0 MiB/s | 153.7 KiB | 00m00s [139/149] publicsuffix-list-dafsa-0:202 100% | 11.6 MiB/s | 59.2 KiB | 00m00s [140/149] krb5-libs-0:1.21.3-6.fc42.x86 100% | 123.7 MiB/s | 759.8 KiB | 00m00s [141/149] gdb-minimal-0:16.3-1.fc42.x86 100% | 176.3 MiB/s | 4.4 MiB | 00m00s [142/149] keyutils-libs-0:1.6.3-5.fc42. 100% | 3.4 MiB/s | 31.5 KiB | 00m00s [143/149] libcom_err-0:1.47.2-3.fc42.x8 100% | 5.3 MiB/s | 26.9 KiB | 00m00s [144/149] libverto-0:0.3.2-10.fc42.x86_ 100% | 10.2 MiB/s | 20.8 KiB | 00m00s [145/149] openldap-0:2.6.10-1.fc42.x86_ 100% | 84.2 MiB/s | 258.6 KiB | 00m00s [146/149] cyrus-sasl-lib-0:2.1.28-30.fc 100% | 129.1 MiB/s | 793.5 KiB | 00m00s [147/149] libtool-ltdl-0:2.5.4-4.fc42.x 100% | 11.8 MiB/s | 36.2 KiB | 00m00s [148/149] libevent-0:2.1.12-15.fc42.x86 100% | 42.3 MiB/s | 260.2 KiB | 00m00s [149/149] gdbm-libs-1:1.23-9.fc42.x86_6 100% | 27.8 MiB/s | 57.0 KiB | 00m00s -------------------------------------------------------------------------------- [149/149] Total 100% | 160.9 MiB/s | 52.4 MiB | 00m00s Running transaction Importing OpenPGP key 0x105EF944: UserID : "Fedora (42) " Fingerprint: B0F4950458F69E1150C6C5EDC8AC4916105EF944 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-42-primary The key was successfully imported. [ 1/151] Verify package files 100% | 805.0 B/s | 149.0 B | 00m00s [ 2/151] Prepare transaction 100% | 3.8 KiB/s | 149.0 B | 00m00s [ 3/151] Installing libgcc-0:15.2.1-3. 100% | 262.0 MiB/s | 268.3 KiB | 00m00s [ 4/151] Installing publicsuffix-list- 100% | 0.0 B/s | 69.8 KiB | 00m00s [ 5/151] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 6/151] Installing fedora-release-ide 100% | 0.0 B/s | 904.0 B | 00m00s [ 7/151] Installing fedora-gpg-keys-0: 100% | 42.7 MiB/s | 174.8 KiB | 00m00s [ 8/151] Installing fedora-repos-0:42- 100% | 0.0 B/s | 5.7 KiB | 00m00s [ 9/151] Installing fedora-release-com 100% | 23.9 MiB/s | 24.5 KiB | 00m00s [ 10/151] Installing fedora-release-0:4 100% | 5.8 KiB/s | 124.0 B | 00m00s >>> Running sysusers scriptlet: setup-0:2.15.0-13.fc42.noarch >>> Finished sysusers scriptlet: setup-0:2.15.0-13.fc42.noarch >>> Scriptlet output: >>> Creating group 'adm' with GID 4. >>> Creating group 'audio' with GID 63. >>> Creating group 'bin' with GID 1. >>> Creating group 'cdrom' with GID 11. >>> Creating group 'clock' with GID 103. >>> Creating group 'daemon' with GID 2. >>> Creating group 'dialout' with GID 18. >>> Creating group 'disk' with GID 6. >>> Creating group 'floppy' with GID 19. >>> Creating group 'ftp' with GID 50. >>> Creating group 'games' with GID 20. >>> Creating group 'input' with GID 104. >>> Creating group 'kmem' with GID 9. >>> Creating group 'kvm' with GID 36. >>> Creating group 'lock' with GID 54. >>> Creating group 'lp' with GID 7. >>> Creating group 'mail' with GID 12. >>> Creating group 'man' with GID 15. >>> Creating group 'mem' with GID 8. >>> Creating group 'nobody' with GID 65534. >>> Creating group 'render' with GID 105. >>> Creating group 'root' with GID 0. >>> Creating group 'sgx' with GID 106. >>> Creating group 'sys' with GID 3. >>> Creating group 'tape' with GID 33. >>> Creating group 'tty' with GID 5. >>> Creating group 'users' with GID 100. >>> Creating group 'utmp' with GID 22. >>> Creating group 'video' with GID 39. >>> Creating group 'wheel' with GID 10. >>> >>> Running sysusers scriptlet: setup-0:2.15.0-13.fc42.noarch >>> Finished sysusers scriptlet: setup-0:2.15.0-13.fc42.noarch >>> Scriptlet output: >>> Creating user 'adm' (adm) with UID 3 and GID 4. >>> Creating user 'bin' (bin) with UID 1 and GID 1. >>> Creating user 'daemon' (daemon) with UID 2 and GID 2. >>> Creating user 'ftp' (FTP User) with UID 14 and GID 50. >>> Creating user 'games' (games) with UID 12 and GID 20. >>> Creating user 'halt' (halt) with UID 7 and GID 0. >>> Creating user 'lp' (lp) with UID 4 and GID 7. >>> Creating user 'mail' (mail) with UID 8 and GID 12. >>> Creating user 'nobody' (Kernel Overflow User) with UID 65534 and GID 65534. >>> Creating user 'operator' (operator) with UID 11 and GID 0. >>> Creating user 'root' (Super User) with UID 0 and GID 0. >>> Creating user 'shutdown' (shutdown) with UID 6 and GID 0. >>> Creating user 'sync' (sync) with UID 5 and GID 0. >>> [ 11/151] Installing setup-0:2.15.0-13. 100% | 47.3 MiB/s | 726.7 KiB | 00m00s >>> [RPM] /etc/hosts created as /etc/hosts.rpmnew [ 12/151] Installing filesystem-0:3.18- 100% | 2.7 MiB/s | 212.8 KiB | 00m00s [ 13/151] Installing basesystem-0:11-22 100% | 0.0 B/s | 124.0 B | 00m00s [ 14/151] Installing pcre2-syntax-0:10. 100% | 271.2 MiB/s | 277.8 KiB | 00m00s [ 15/151] Installing pkgconf-m4-0:2.3.0 100% | 0.0 B/s | 14.8 KiB | 00m00s [ 16/151] Installing rust-srpm-macros-0 100% | 0.0 B/s | 5.6 KiB | 00m00s [ 17/151] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 740.0 B | 00m00s [ 18/151] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [ 19/151] Installing gnulib-l10n-0:2024 100% | 215.5 MiB/s | 661.9 KiB | 00m00s [ 20/151] Installing coreutils-common-0 100% | 371.8 MiB/s | 11.2 MiB | 00m00s [ 21/151] Installing ncurses-base-0:6.5 100% | 86.0 MiB/s | 352.2 KiB | 00m00s [ 22/151] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 23/151] Installing ncurses-libs-0:6.5 100% | 232.6 MiB/s | 952.8 KiB | 00m00s [ 24/151] Installing glibc-0:2.41-11.fc 100% | 195.7 MiB/s | 6.7 MiB | 00m00s [ 25/151] Installing bash-0:5.2.37-1.fc 100% | 263.5 MiB/s | 8.2 MiB | 00m00s [ 26/151] Installing glibc-common-0:2.4 100% | 60.0 MiB/s | 1.0 MiB | 00m00s [ 27/151] Installing glibc-gconv-extra- 100% | 261.0 MiB/s | 7.3 MiB | 00m00s [ 28/151] Installing zlib-ng-compat-0:2 100% | 135.2 MiB/s | 138.4 KiB | 00m00s [ 29/151] Installing bzip2-libs-0:1.0.8 100% | 83.7 MiB/s | 85.7 KiB | 00m00s [ 30/151] Installing xz-libs-1:5.8.1-2. 100% | 213.8 MiB/s | 218.9 KiB | 00m00s [ 31/151] Installing libuuid-0:2.40.4-7 100% | 0.0 B/s | 38.4 KiB | 00m00s [ 32/151] Installing libblkid-0:2.40.4- 100% | 257.4 MiB/s | 263.5 KiB | 00m00s [ 33/151] Installing popt-0:1.19-8.fc42 100% | 68.1 MiB/s | 139.4 KiB | 00m00s [ 34/151] Installing readline-0:8.2-13. 100% | 237.9 MiB/s | 487.1 KiB | 00m00s [ 35/151] Installing gmp-1:6.3.0-4.fc42 100% | 397.2 MiB/s | 813.5 KiB | 00m00s [ 36/151] Installing libzstd-0:1.5.7-1. 100% | 395.1 MiB/s | 809.1 KiB | 00m00s [ 37/151] Installing elfutils-libelf-0: 100% | 388.8 MiB/s | 1.2 MiB | 00m00s [ 38/151] Installing libstdc++-0:15.2.1 100% | 405.2 MiB/s | 2.8 MiB | 00m00s [ 39/151] Installing libxcrypt-0:4.4.38 100% | 280.4 MiB/s | 287.2 KiB | 00m00s [ 40/151] Installing libattr-0:2.5.2-5. 100% | 0.0 B/s | 28.1 KiB | 00m00s [ 41/151] Installing libacl-0:2.3.2-3.f 100% | 0.0 B/s | 39.2 KiB | 00m00s [ 42/151] Installing dwz-0:0.16-1.fc42. 100% | 20.1 MiB/s | 288.5 KiB | 00m00s [ 43/151] Installing mpfr-0:4.2.2-1.fc4 100% | 270.3 MiB/s | 830.4 KiB | 00m00s [ 44/151] Installing gawk-0:5.3.1-1.fc4 100% | 94.2 MiB/s | 1.7 MiB | 00m00s [ 45/151] Installing unzip-0:6.0-66.fc4 100% | 27.5 MiB/s | 393.8 KiB | 00m00s [ 46/151] Installing file-libs-0:5.46-3 100% | 697.5 MiB/s | 11.9 MiB | 00m00s [ 47/151] Installing file-0:5.46-3.fc42 100% | 4.3 MiB/s | 101.7 KiB | 00m00s [ 48/151] Installing crypto-policies-0: 100% | 32.8 MiB/s | 167.8 KiB | 00m00s [ 49/151] Installing libcap-ng-0:0.8.5- 100% | 73.1 MiB/s | 74.8 KiB | 00m00s [ 50/151] Installing audit-libs-0:4.1.1 100% | 186.3 MiB/s | 381.5 KiB | 00m00s [ 51/151] Installing libsmartcols-0:2.4 100% | 177.3 MiB/s | 181.5 KiB | 00m00s [ 52/151] Installing lz4-libs-0:1.10.0- 100% | 154.7 MiB/s | 158.5 KiB | 00m00s [ 53/151] Installing libsepol-0:3.8-1.f 100% | 269.2 MiB/s | 827.0 KiB | 00m00s [ 54/151] Installing libeconf-0:0.7.6-2 100% | 64.7 MiB/s | 66.2 KiB | 00m00s [ 55/151] Installing pam-libs-0:1.7.0-6 100% | 126.1 MiB/s | 129.1 KiB | 00m00s [ 56/151] Installing libcap-0:2.73-2.fc 100% | 13.8 MiB/s | 212.1 KiB | 00m00s [ 57/151] Installing systemd-libs-0:257 100% | 319.4 MiB/s | 2.2 MiB | 00m00s [ 58/151] Installing lua-libs-0:5.4.8-1 100% | 275.4 MiB/s | 282.0 KiB | 00m00s [ 59/151] Installing pcre2-0:10.46-1.fc 100% | 341.4 MiB/s | 699.1 KiB | 00m00s [ 60/151] Installing libselinux-0:3.8-3 100% | 189.8 MiB/s | 194.3 KiB | 00m00s [ 61/151] Installing grep-0:3.11-10.fc4 100% | 62.7 MiB/s | 1.0 MiB | 00m00s [ 62/151] Installing findutils-1:4.10.0 100% | 104.1 MiB/s | 1.9 MiB | 00m00s [ 63/151] Installing sed-0:4.9-4.fc42.x 100% | 52.8 MiB/s | 865.5 KiB | 00m00s [ 64/151] Installing xz-1:5.8.1-2.fc42. 100% | 74.0 MiB/s | 1.3 MiB | 00m00s [ 65/151] Installing libmount-0:2.40.4- 100% | 348.9 MiB/s | 357.3 KiB | 00m00s [ 66/151] Installing libffi-0:3.4.6-5.f 100% | 81.7 MiB/s | 83.7 KiB | 00m00s [ 67/151] Installing libtasn1-0:4.20.0- 100% | 173.9 MiB/s | 178.1 KiB | 00m00s [ 68/151] Installing p11-kit-0:0.25.8-1 100% | 109.0 MiB/s | 2.3 MiB | 00m00s [ 69/151] Installing alternatives-0:1.3 100% | 4.8 MiB/s | 63.8 KiB | 00m00s [ 70/151] Installing libunistring-0:1.1 100% | 345.3 MiB/s | 1.7 MiB | 00m00s [ 71/151] Installing libidn2-0:2.3.8-1. 100% | 183.2 MiB/s | 562.7 KiB | 00m00s [ 72/151] Installing libpsl-0:0.21.5-5. 100% | 75.7 MiB/s | 77.5 KiB | 00m00s [ 73/151] Installing p11-kit-trust-0:0. 100% | 18.2 MiB/s | 448.3 KiB | 00m00s [ 74/151] Installing openssl-libs-1:3.2 100% | 372.6 MiB/s | 7.8 MiB | 00m00s [ 75/151] Installing coreutils-0:9.6-6. 100% | 143.5 MiB/s | 5.5 MiB | 00m00s [ 76/151] Installing ca-certificates-0: 100% | 1.9 MiB/s | 2.5 MiB | 00m01s [ 77/151] Installing gzip-0:1.13-3.fc42 100% | 25.9 MiB/s | 398.4 KiB | 00m00s [ 78/151] Installing rpm-sequoia-0:1.7. 100% | 344.9 MiB/s | 2.4 MiB | 00m00s [ 79/151] Installing libevent-0:2.1.12- 100% | 295.2 MiB/s | 906.9 KiB | 00m00s [ 80/151] Installing util-linux-core-0: 100% | 75.1 MiB/s | 1.4 MiB | 00m00s [ 81/151] Installing tar-2:1.35-5.fc42. 100% | 141.0 MiB/s | 3.0 MiB | 00m00s [ 82/151] Installing libsemanage-0:3.8. 100% | 149.5 MiB/s | 306.2 KiB | 00m00s [ 83/151] Installing shadow-utils-2:4.1 100% | 134.8 MiB/s | 4.0 MiB | 00m00s [ 84/151] Installing systemd-standalone 100% | 20.9 MiB/s | 277.8 KiB | 00m00s [ 85/151] Installing zstd-0:1.5.7-1.fc4 100% | 100.6 MiB/s | 1.7 MiB | 00m00s [ 86/151] Installing zip-0:3.0-43.fc42. 100% | 45.7 MiB/s | 702.4 KiB | 00m00s [ 87/151] Installing libfdisk-0:2.40.4- 100% | 182.3 MiB/s | 373.4 KiB | 00m00s [ 88/151] Installing libxml2-0:2.12.10- 100% | 99.8 MiB/s | 1.7 MiB | 00m00s [ 89/151] Installing libarchive-0:3.8.1 100% | 311.6 MiB/s | 957.1 KiB | 00m00s [ 90/151] Installing bzip2-0:1.0.8-20.f 100% | 7.8 MiB/s | 103.8 KiB | 00m00s [ 91/151] Installing add-determinism-0: 100% | 129.8 MiB/s | 2.5 MiB | 00m00s [ 92/151] Installing build-reproducibil 100% | 0.0 B/s | 1.0 KiB | 00m00s [ 93/151] Installing sqlite-libs-0:3.47 100% | 378.1 MiB/s | 1.5 MiB | 00m00s [ 94/151] Installing rpm-libs-0:4.20.1- 100% | 353.2 MiB/s | 723.4 KiB | 00m00s [ 95/151] Installing ed-0:1.21-2.fc42.x 100% | 11.2 MiB/s | 148.8 KiB | 00m00s [ 96/151] Installing patch-0:2.8-1.fc42 100% | 16.9 MiB/s | 224.3 KiB | 00m00s [ 97/151] Installing filesystem-srpm-ma 100% | 0.0 B/s | 38.9 KiB | 00m00s [ 98/151] Installing elfutils-default-y 100% | 227.0 KiB/s | 2.0 KiB | 00m00s [ 99/151] Installing elfutils-libs-0:0. 100% | 223.1 MiB/s | 685.2 KiB | 00m00s [100/151] Installing cpio-0:2.15-4.fc42 100% | 61.1 MiB/s | 1.1 MiB | 00m00s [101/151] Installing diffutils-0:3.12-1 100% | 86.7 MiB/s | 1.6 MiB | 00m00s [102/151] Installing json-c-0:0.18-2.fc 100% | 85.9 MiB/s | 88.0 KiB | 00m00s [103/151] Installing libgomp-0:15.2.1-3 100% | 265.1 MiB/s | 543.0 KiB | 00m00s [104/151] Installing rpm-build-libs-0:4 100% | 202.5 MiB/s | 207.4 KiB | 00m00s [105/151] Installing jansson-0:2.14-2.f 100% | 92.2 MiB/s | 94.4 KiB | 00m00s [106/151] Installing libpkgconf-0:2.3.0 100% | 77.4 MiB/s | 79.2 KiB | 00m00s [107/151] Installing pkgconf-0:2.3.0-2. 100% | 6.8 MiB/s | 91.0 KiB | 00m00s [108/151] Installing pkgconf-pkg-config 100% | 136.4 KiB/s | 1.8 KiB | 00m00s [109/151] Installing libbrotli-0:1.1.0- 100% | 274.6 MiB/s | 843.6 KiB | 00m00s [110/151] Installing libnghttp2-0:1.64. 100% | 167.5 MiB/s | 171.5 KiB | 00m00s [111/151] Installing xxhash-libs-0:0.8. 100% | 89.4 MiB/s | 91.6 KiB | 00m00s [112/151] Installing keyutils-libs-0:1. 100% | 58.3 MiB/s | 59.7 KiB | 00m00s [113/151] Installing libcom_err-0:1.47. 100% | 0.0 B/s | 68.2 KiB | 00m00s [114/151] Installing libverto-0:0.3.2-1 100% | 26.6 MiB/s | 27.2 KiB | 00m00s [115/151] Installing krb5-libs-0:1.21.3 100% | 327.4 MiB/s | 2.3 MiB | 00m00s [116/151] Installing libssh-0:0.11.3-1. 100% | 277.9 MiB/s | 569.2 KiB | 00m00s [117/151] Installing libtool-ltdl-0:2.5 100% | 69.6 MiB/s | 71.2 KiB | 00m00s [118/151] Installing gdbm-libs-1:1.23-9 100% | 128.5 MiB/s | 131.6 KiB | 00m00s [119/151] Installing cyrus-sasl-lib-0:2 100% | 121.3 MiB/s | 2.3 MiB | 00m00s [120/151] Installing openldap-0:2.6.10- 100% | 214.7 MiB/s | 659.6 KiB | 00m00s [121/151] Installing libcurl-0:8.11.1-6 100% | 271.9 MiB/s | 835.2 KiB | 00m00s [122/151] Installing elfutils-debuginfo 100% | 6.5 MiB/s | 86.2 KiB | 00m00s [123/151] Installing elfutils-0:0.193-2 100% | 146.1 MiB/s | 2.9 MiB | 00m00s [124/151] Installing binutils-0:2.44-6. 100% | 300.5 MiB/s | 25.8 MiB | 00m00s [125/151] Installing gdb-minimal-0:16.3 100% | 276.0 MiB/s | 13.2 MiB | 00m00s [126/151] Installing debugedit-0:5.1-7. 100% | 13.6 MiB/s | 195.4 KiB | 00m00s [127/151] Installing curl-0:8.11.1-6.fc 100% | 16.4 MiB/s | 453.1 KiB | 00m00s [128/151] Installing rpm-0:4.20.1-1.fc4 100% | 92.5 MiB/s | 2.5 MiB | 00m00s [129/151] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [130/151] Installing tree-sitter-srpm-m 100% | 0.0 B/s | 7.4 KiB | 00m00s [131/151] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.7 KiB | 00m00s [132/151] Installing efi-srpm-macros-0: 100% | 0.0 B/s | 41.1 KiB | 00m00s [133/151] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [134/151] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s [135/151] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [136/151] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.2 KiB | 00m00s [137/151] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [138/151] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [139/151] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [140/151] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [141/151] Installing ansible-srpm-macro 100% | 0.0 B/s | 36.2 KiB | 00m00s [142/151] Installing forge-srpm-macros- 100% | 0.0 B/s | 40.3 KiB | 00m00s [143/151] Installing fonts-srpm-macros- 100% | 55.7 MiB/s | 57.0 KiB | 00m00s [144/151] Installing go-srpm-macros-0:3 100% | 61.6 MiB/s | 63.0 KiB | 00m00s [145/151] Installing python-srpm-macros 100% | 50.9 MiB/s | 52.2 KiB | 00m00s [146/151] Installing redhat-rpm-config- 100% | 93.9 MiB/s | 192.2 KiB | 00m00s [147/151] Installing rpm-build-0:4.20.1 100% | 11.5 MiB/s | 177.4 KiB | 00m00s [148/151] Installing pyproject-srpm-mac 100% | 2.4 MiB/s | 2.5 KiB | 00m00s [149/151] Installing util-linux-0:2.40. 100% | 88.8 MiB/s | 3.5 MiB | 00m00s [150/151] Installing which-0:2.23-2.fc4 100% | 6.0 MiB/s | 85.7 KiB | 00m00s [151/151] Installing info-0:7.2-3.fc42. 100% | 212.4 KiB/s | 358.3 KiB | 00m02s Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.6.0-1.fc42.x86_64 alternatives-1.33-1.fc42.x86_64 ansible-srpm-macros-1-17.1.fc42.noarch audit-libs-4.1.1-1.fc42.x86_64 basesystem-11-22.fc42.noarch bash-5.2.37-1.fc42.x86_64 binutils-2.44-6.fc42.x86_64 build-reproducibility-srpm-macros-0.6.0-1.fc42.noarch bzip2-1.0.8-20.fc42.x86_64 bzip2-libs-1.0.8-20.fc42.x86_64 ca-certificates-2025.2.80_v9.0.304-1.0.fc42.noarch coreutils-9.6-6.fc42.x86_64 coreutils-common-9.6-6.fc42.x86_64 cpio-2.15-4.fc42.x86_64 crypto-policies-20250707-1.gitad370a8.fc42.noarch curl-8.11.1-6.fc42.x86_64 cyrus-sasl-lib-2.1.28-30.fc42.x86_64 debugedit-5.1-7.fc42.x86_64 diffutils-3.12-1.fc42.x86_64 dwz-0.16-1.fc42.x86_64 ed-1.21-2.fc42.x86_64 efi-srpm-macros-6-3.fc42.noarch elfutils-0.193-2.fc42.x86_64 elfutils-debuginfod-client-0.193-2.fc42.x86_64 elfutils-default-yama-scope-0.193-2.fc42.noarch elfutils-libelf-0.193-2.fc42.x86_64 elfutils-libs-0.193-2.fc42.x86_64 fedora-gpg-keys-42-1.noarch fedora-release-42-30.noarch fedora-release-common-42-30.noarch fedora-release-identity-basic-42-30.noarch fedora-repos-42-1.noarch file-5.46-3.fc42.x86_64 file-libs-5.46-3.fc42.x86_64 filesystem-3.18-47.fc42.x86_64 filesystem-srpm-macros-3.18-47.fc42.noarch findutils-4.10.0-5.fc42.x86_64 fonts-srpm-macros-2.0.5-22.fc42.noarch forge-srpm-macros-0.4.0-2.fc42.noarch fpc-srpm-macros-1.3-14.fc42.noarch gawk-5.3.1-1.fc42.x86_64 gdb-minimal-16.3-1.fc42.x86_64 gdbm-libs-1.23-9.fc42.x86_64 ghc-srpm-macros-1.9.2-2.fc42.noarch glibc-2.41-11.fc42.x86_64 glibc-common-2.41-11.fc42.x86_64 glibc-gconv-extra-2.41-11.fc42.x86_64 glibc-minimal-langpack-2.41-11.fc42.x86_64 gmp-6.3.0-4.fc42.x86_64 gnat-srpm-macros-6-7.fc42.noarch gnulib-l10n-20241231-1.fc42.noarch go-srpm-macros-3.8.0-1.fc42.noarch gpg-pubkey-105ef944-65ca83d1 grep-3.11-10.fc42.x86_64 gzip-1.13-3.fc42.x86_64 info-7.2-3.fc42.x86_64 jansson-2.14-2.fc42.x86_64 json-c-0.18-2.fc42.x86_64 kernel-srpm-macros-1.0-25.fc42.noarch keyutils-libs-1.6.3-5.fc42.x86_64 krb5-libs-1.21.3-6.fc42.x86_64 libacl-2.3.2-3.fc42.x86_64 libarchive-3.8.1-1.fc42.x86_64 libattr-2.5.2-5.fc42.x86_64 libblkid-2.40.4-7.fc42.x86_64 libbrotli-1.1.0-6.fc42.x86_64 libcap-2.73-2.fc42.x86_64 libcap-ng-0.8.5-4.fc42.x86_64 libcom_err-1.47.2-3.fc42.x86_64 libcurl-8.11.1-6.fc42.x86_64 libeconf-0.7.6-2.fc42.x86_64 libevent-2.1.12-15.fc42.x86_64 libfdisk-2.40.4-7.fc42.x86_64 libffi-3.4.6-5.fc42.x86_64 libgcc-15.2.1-3.fc42.x86_64 libgomp-15.2.1-3.fc42.x86_64 libidn2-2.3.8-1.fc42.x86_64 libmount-2.40.4-7.fc42.x86_64 libnghttp2-1.64.0-3.fc42.x86_64 libpkgconf-2.3.0-2.fc42.x86_64 libpsl-0.21.5-5.fc42.x86_64 libselinux-3.8-3.fc42.x86_64 libsemanage-3.8.1-2.fc42.x86_64 libsepol-3.8-1.fc42.x86_64 libsmartcols-2.40.4-7.fc42.x86_64 libssh-0.11.3-1.fc42.x86_64 libssh-config-0.11.3-1.fc42.noarch libstdc++-15.2.1-3.fc42.x86_64 libtasn1-4.20.0-1.fc42.x86_64 libtool-ltdl-2.5.4-4.fc42.x86_64 libunistring-1.1-9.fc42.x86_64 libuuid-2.40.4-7.fc42.x86_64 libverto-0.3.2-10.fc42.x86_64 libxcrypt-4.4.38-7.fc42.x86_64 libxml2-2.12.10-1.fc42.x86_64 libzstd-1.5.7-1.fc42.x86_64 lua-libs-5.4.8-1.fc42.x86_64 lua-srpm-macros-1-15.fc42.noarch lz4-libs-1.10.0-2.fc42.x86_64 mpfr-4.2.2-1.fc42.x86_64 ncurses-base-6.5-5.20250125.fc42.noarch ncurses-libs-6.5-5.20250125.fc42.x86_64 ocaml-srpm-macros-10-4.fc42.noarch openblas-srpm-macros-2-19.fc42.noarch openldap-2.6.10-1.fc42.x86_64 openssl-libs-3.2.6-2.fc42.x86_64 p11-kit-0.25.8-1.fc42.x86_64 p11-kit-trust-0.25.8-1.fc42.x86_64 package-notes-srpm-macros-0.5-13.fc42.noarch pam-libs-1.7.0-6.fc42.x86_64 patch-2.8-1.fc42.x86_64 pcre2-10.46-1.fc42.x86_64 pcre2-syntax-10.46-1.fc42.noarch perl-srpm-macros-1-57.fc42.noarch pkgconf-2.3.0-2.fc42.x86_64 pkgconf-m4-2.3.0-2.fc42.noarch pkgconf-pkg-config-2.3.0-2.fc42.x86_64 popt-1.19-8.fc42.x86_64 publicsuffix-list-dafsa-20250616-1.fc42.noarch pyproject-srpm-macros-1.18.4-1.fc42.noarch python-srpm-macros-3.13-5.fc42.noarch qt5-srpm-macros-5.15.17-1.fc42.noarch qt6-srpm-macros-6.9.2-1.fc42.noarch readline-8.2-13.fc42.x86_64 redhat-rpm-config-342-4.fc42.noarch rpm-4.20.1-1.fc42.x86_64 rpm-build-4.20.1-1.fc42.x86_64 rpm-build-libs-4.20.1-1.fc42.x86_64 rpm-libs-4.20.1-1.fc42.x86_64 rpm-sequoia-1.7.0-5.fc42.x86_64 rust-srpm-macros-26.4-1.fc42.noarch sed-4.9-4.fc42.x86_64 setup-2.15.0-13.fc42.noarch shadow-utils-4.17.4-1.fc42.x86_64 sqlite-libs-3.47.2-5.fc42.x86_64 systemd-libs-257.10-1.fc42.x86_64 systemd-standalone-sysusers-257.10-1.fc42.x86_64 tar-1.35-5.fc42.x86_64 tree-sitter-srpm-macros-0.1.0-8.fc42.noarch unzip-6.0-66.fc42.x86_64 util-linux-2.40.4-7.fc42.x86_64 util-linux-core-2.40.4-7.fc42.x86_64 which-2.23-2.fc42.x86_64 xxhash-libs-0.8.3-2.fc42.x86_64 xz-5.8.1-2.fc42.x86_64 xz-libs-5.8.1-2.fc42.x86_64 zig-srpm-macros-1-4.fc42.noarch zip-3.0-43.fc42.x86_64 zlib-ng-compat-2.2.5-2.fc42.x86_64 zstd-1.5.7-1.fc42.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1761609600 Wrote: /builddir/build/SRPMS/python-biopython-1.86-1.fc42.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-42-x86_64-1761692840.824553/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-uuhqn6_2/python-biopython/python-biopython.spec) Config(child) 0 minutes 26 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/python-biopython-1.86-1.fc42.src.rpm) Config(fedora-42-x86_64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-42-x86_64-bootstrap-1761692840.824553/root. INFO: reusing tmpfs at /var/lib/mock/fedora-42-x86_64-bootstrap-1761692840.824553/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-42-x86_64-1761692840.824553/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.20.1-1.fc42.x86_64 rpm-sequoia-1.7.0-5.fc42.x86_64 dnf5-5.2.16.0-1.fc42.x86_64 dnf5-plugins-5.2.16.0-1.fc42.x86_64 Finish: chroot init Start: build phase for python-biopython-1.86-1.fc42.src.rpm Start: build setup for python-biopython-1.86-1.fc42.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1761609600 Wrote: /builddir/build/SRPMS/python-biopython-1.86-1.fc42.src.rpm Updating and loading repositories: Copr repository 100% | 96.3 KiB/s | 1.5 KiB | 00m00s fedora 100% | 87.1 KiB/s | 31.9 KiB | 00m00s updates 100% | 403.9 KiB/s | 29.5 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: gcc x86_64 15.2.1-3.fc42 updates 111.2 MiB python3-devel x86_64 3.13.9-1.fc42 updates 1.8 MiB Installing dependencies: annobin-docs noarch 12.94-1.fc42 updates 98.9 KiB annobin-plugin-gcc x86_64 12.94-1.fc42 updates 993.5 KiB cpp x86_64 15.2.1-3.fc42 updates 37.9 MiB expat x86_64 2.7.2-1.fc42 updates 298.6 KiB gcc-plugin-annobin x86_64 15.2.1-3.fc42 updates 57.1 KiB glibc-devel x86_64 2.41-11.fc42 updates 2.3 MiB kernel-headers x86_64 6.17.4-200.fc42 updates 6.7 MiB libb2 x86_64 0.98.1-13.fc42 fedora 46.1 KiB libmpc x86_64 1.3.1-7.fc42 fedora 164.5 KiB libxcrypt-devel x86_64 4.4.38-7.fc42 updates 30.8 KiB make x86_64 1:4.4.1-10.fc42 fedora 1.8 MiB mpdecimal x86_64 4.0.1-1.fc42 updates 217.2 KiB pyproject-rpm-macros noarch 1.18.4-1.fc42 updates 114.9 KiB python-pip-wheel noarch 24.3.1-5.fc42 updates 1.2 MiB python-rpm-macros noarch 3.13-5.fc42 updates 22.1 KiB python3 x86_64 3.13.9-1.fc42 updates 28.7 KiB python3-libs x86_64 3.13.9-1.fc42 updates 40.1 MiB python3-packaging noarch 25.0-1.fc42 copr_base 534.5 KiB python3-rpm-generators noarch 14-12.fc42 fedora 81.7 KiB python3-rpm-macros noarch 3.13-5.fc42 updates 6.4 KiB tzdata noarch 2025b-1.fc42 fedora 1.6 MiB Transaction Summary: Installing: 23 packages Total size of inbound packages is 69 MiB. Need to download 69 MiB. After this operation, 207 MiB extra will be used (install 207 MiB, remove 0 B). [ 1/23] libmpc-0:1.3.1-7.fc42.x86_64 100% | 5.3 MiB/s | 70.9 KiB | 00m00s [ 2/23] python3-devel-0:3.13.9-1.fc42.x 100% | 24.8 MiB/s | 406.9 KiB | 00m00s [ 3/23] make-1:4.4.1-10.fc42.x86_64 100% | 47.8 MiB/s | 587.0 KiB | 00m00s [ 4/23] python3-libs-0:3.13.9-1.fc42.x8 100% | 126.2 MiB/s | 9.2 MiB | 00m00s [ 5/23] cpp-0:15.2.1-3.fc42.x86_64 100% | 128.1 MiB/s | 12.9 MiB | 00m00s [ 6/23] libb2-0:0.98.1-13.fc42.x86_64 100% | 1.4 MiB/s | 25.4 KiB | 00m00s [ 7/23] tzdata-0:2025b-1.fc42.noarch 100% | 63.4 MiB/s | 714.0 KiB | 00m00s [ 8/23] expat-0:2.7.2-1.fc42.x86_64 100% | 11.6 MiB/s | 119.0 KiB | 00m00s [ 9/23] mpdecimal-0:4.0.1-1.fc42.x86_64 100% | 23.7 MiB/s | 97.1 KiB | 00m00s [10/23] python-pip-wheel-0:24.3.1-5.fc4 100% | 150.4 MiB/s | 1.2 MiB | 00m00s [11/23] python3-0:3.13.9-1.fc42.x86_64 100% | 6.0 MiB/s | 30.8 KiB | 00m00s [12/23] glibc-devel-0:2.41-11.fc42.x86_ 100% | 121.7 MiB/s | 623.2 KiB | 00m00s [13/23] kernel-headers-0:6.17.4-200.fc4 100% | 141.3 MiB/s | 1.7 MiB | 00m00s [14/23] libxcrypt-devel-0:4.4.38-7.fc42 100% | 4.1 MiB/s | 29.4 KiB | 00m00s [15/23] pyproject-rpm-macros-0:1.18.4-1 100% | 14.6 MiB/s | 44.9 KiB | 00m00s [16/23] gcc-plugin-annobin-0:15.2.1-3.f 100% | 14.1 MiB/s | 57.8 KiB | 00m00s [17/23] python-rpm-macros-0:3.13-5.fc42 100% | 4.0 MiB/s | 16.4 KiB | 00m00s [18/23] python3-rpm-generators-0:14-12. 100% | 9.5 MiB/s | 29.2 KiB | 00m00s [19/23] python3-rpm-macros-0:3.13-5.fc4 100% | 2.7 MiB/s | 11.2 KiB | 00m00s [20/23] annobin-plugin-gcc-0:12.94-1.fc 100% | 137.0 MiB/s | 981.9 KiB | 00m00s [21/23] annobin-docs-0:12.94-1.fc42.noa 100% | 17.7 MiB/s | 90.4 KiB | 00m00s [22/23] python3-packaging-0:25.0-1.fc42 100% | 19.3 MiB/s | 138.4 KiB | 00m00s [23/23] gcc-0:15.2.1-3.fc42.x86_64 100% | 175.1 MiB/s | 39.6 MiB | 00m00s -------------------------------------------------------------------------------- [23/23] Total 100% | 299.5 MiB/s | 68.6 MiB | 00m00s Running transaction [ 1/25] Verify package files 100% | 109.0 B/s | 23.0 B | 00m00s [ 2/25] Prepare transaction 100% | 696.0 B/s | 23.0 B | 00m00s [ 3/25] Installing python-rpm-macros-0: 100% | 22.3 MiB/s | 22.8 KiB | 00m00s [ 4/25] Installing python3-rpm-macros-0 100% | 0.0 B/s | 6.7 KiB | 00m00s [ 5/25] Installing libmpc-0:1.3.1-7.fc4 100% | 162.2 MiB/s | 166.1 KiB | 00m00s [ 6/25] Installing cpp-0:15.2.1-3.fc42. 100% | 324.3 MiB/s | 37.9 MiB | 00m00s [ 7/25] Installing pyproject-rpm-macros 100% | 114.1 MiB/s | 116.8 KiB | 00m00s [ 8/25] Installing annobin-docs-0:12.94 100% | 48.8 MiB/s | 100.0 KiB | 00m00s [ 9/25] Installing kernel-headers-0:6.1 100% | 214.8 MiB/s | 6.9 MiB | 00m00s [10/25] Installing libxcrypt-devel-0:4. 100% | 16.2 MiB/s | 33.1 KiB | 00m00s [11/25] Installing glibc-devel-0:2.41-1 100% | 179.4 MiB/s | 2.3 MiB | 00m00s [12/25] Installing python-pip-wheel-0:2 100% | 622.2 MiB/s | 1.2 MiB | 00m00s [13/25] Installing mpdecimal-0:4.0.1-1. 100% | 213.7 MiB/s | 218.8 KiB | 00m00s [14/25] Installing expat-0:2.7.2-1.fc42 100% | 16.3 MiB/s | 300.7 KiB | 00m00s [15/25] Installing tzdata-0:2025b-1.fc4 100% | 63.1 MiB/s | 1.9 MiB | 00m00s [16/25] Installing libb2-0:0.98.1-13.fc 100% | 9.2 MiB/s | 47.2 KiB | 00m00s [17/25] Installing python3-libs-0:3.13. 100% | 326.4 MiB/s | 40.5 MiB | 00m00s [18/25] Installing python3-0:3.13.9-1.f 100% | 2.1 MiB/s | 30.5 KiB | 00m00s [19/25] Installing python3-packaging-0: 100% | 177.7 MiB/s | 545.8 KiB | 00m00s [20/25] Installing python3-rpm-generato 100% | 81.0 MiB/s | 82.9 KiB | 00m00s [21/25] Installing make-1:4.4.1-10.fc42 100% | 94.7 MiB/s | 1.8 MiB | 00m00s [22/25] Installing gcc-0:15.2.1-3.fc42. 100% | 381.2 MiB/s | 111.3 MiB | 00m00s [23/25] Installing gcc-plugin-annobin-0 100% | 3.8 MiB/s | 58.8 KiB | 00m00s [24/25] Installing annobin-plugin-gcc-0 100% | 57.2 MiB/s | 995.1 KiB | 00m00s [25/25] Installing python3-devel-0:3.13 100% | 13.2 MiB/s | 1.8 MiB | 00m00s Warning: skipped OpenPGP checks for 1 package from repository: copr_base Complete! Finish: build setup for python-biopython-1.86-1.fc42.src.rpm Start: rpmbuild python-biopython-1.86-1.fc42.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1761609600 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.KcdbAW Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.O0G7uf + umask 022 + cd /builddir/build/BUILD/python-biopython-1.86-build + cd /builddir/build/BUILD/python-biopython-1.86-build + rm -rf biopython-1.86 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/biopython-1.86.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd biopython-1.86 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.0sPR1q + umask 022 + cd /builddir/build/BUILD/python-biopython-1.86-build + cd biopython-1.86 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir + RPM_TOXENV=py313 + FEDORA=42 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-biopython-1.86-build/pyproject-wheeldir --output /builddir/build/BUILD/python-biopython-1.86-build/python-biopython-1.86-1.fc42.x86_64-pyproject-buildrequires Handling setuptools >= 40.8 from default build backend Requirement not satisfied: setuptools >= 40.8 Exiting dependency generation pass: build backend + cat /builddir/build/BUILD/python-biopython-1.86-build/python-biopython-1.86-1.fc42.x86_64-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-biopython-1.86-1.fc42.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: Copr repository 100% | 128.3 KiB/s | 1.5 KiB | 00m00s fedora 100% | 172.3 KiB/s | 31.9 KiB | 00m00s updates 100% | 252.0 KiB/s | 29.5 KiB | 00m00s Repositories loaded. Package "gcc-15.2.1-3.fc42.x86_64" is already installed. Package "pyproject-rpm-macros-1.18.4-1.fc42.noarch" is already installed. Package "python3-devel-3.13.9-1.fc42.x86_64" is already installed. Package "python3-packaging-25.0-1.fc42.noarch" is already installed. Package Arch Version Repository Size Installing: python3-pip noarch 24.3.1-5.fc42 updates 11.3 MiB python3-setuptools noarch 74.1.3-7.fc42 updates 8.4 MiB Transaction Summary: Installing: 2 packages Total size of inbound packages is 5 MiB. Need to download 5 MiB. After this operation, 20 MiB extra will be used (install 20 MiB, remove 0 B). [1/2] python3-setuptools-0:74.1.3-7.fc4 100% | 81.7 MiB/s | 2.0 MiB | 00m00s [2/2] python3-pip-0:24.3.1-5.fc42.noarc 100% | 87.7 MiB/s | 2.7 MiB | 00m00s -------------------------------------------------------------------------------- [2/2] Total 100% | 146.2 MiB/s | 4.7 MiB | 00m00s Running transaction [1/4] Verify package files 100% | 142.0 B/s | 2.0 B | 00m00s [2/4] Prepare transaction 100% | 100.0 B/s | 2.0 B | 00m00s [3/4] Installing python3-setuptools-0:7 100% | 203.8 MiB/s | 8.6 MiB | 00m00s [4/4] Installing python3-pip-0:24.3.1-5 100% | 152.9 MiB/s | 11.6 MiB | 00m00s Complete! Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1761609600 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.SX6SQQ + umask 022 + cd /builddir/build/BUILD/python-biopython-1.86-build + cd biopython-1.86 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir + RPM_TOXENV=py313 + FEDORA=42 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-biopython-1.86-build/pyproject-wheeldir --output /builddir/build/BUILD/python-biopython-1.86-build/python-biopython-1.86-1.fc42.x86_64-pyproject-buildrequires Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 74.1.3) running egg_info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Doc/_build' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file 'biopython.egg-info/SOURCES.txt' running dist_info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Doc/_build' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file 'biopython.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-biopython-1.86-build/biopython-1.86/biopython-1.86.dist-info' Handling numpy from hook generated metadata: Requires-Dist (biopython) Requirement not satisfied: numpy + cat /builddir/build/BUILD/python-biopython-1.86-build/python-biopython-1.86-1.fc42.x86_64-pyproject-buildrequires + rm -rfv biopython-1.86.dist-info/ removed 'biopython-1.86.dist-info/LICENSE.rst' removed 'biopython-1.86.dist-info/LICENSE' removed 'biopython-1.86.dist-info/METADATA' removed 'biopython-1.86.dist-info/top_level.txt' removed directory 'biopython-1.86.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-biopython-1.86-1.fc42.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: Copr repository 100% | 118.5 KiB/s | 1.5 KiB | 00m00s fedora 100% | 129.1 KiB/s | 31.9 KiB | 00m00s updates 100% | 192.7 KiB/s | 29.5 KiB | 00m00s Repositories loaded. Package "gcc-15.2.1-3.fc42.x86_64" is already installed. Package "pyproject-rpm-macros-1.18.4-1.fc42.noarch" is already installed. Package "python3-devel-3.13.9-1.fc42.x86_64" is already installed. Package "python3-packaging-25.0-1.fc42.noarch" is already installed. Package "python3-pip-24.3.1-5.fc42.noarch" is already installed. Package "python3-setuptools-74.1.3-7.fc42.noarch" is already installed. Package Arch Version Repository Size Installing: python3-numpy x86_64 1:2.2.6-1.fc42 updates 40.3 MiB Installing dependencies: flexiblas x86_64 3.4.5-1.fc42 fedora 50.4 KiB flexiblas-netlib x86_64 3.4.5-1.fc42 fedora 10.9 MiB flexiblas-openblas-openmp x86_64 3.4.5-1.fc42 fedora 39.2 KiB libgfortran x86_64 15.2.1-3.fc42 updates 3.4 MiB libquadmath x86_64 15.2.1-3.fc42 updates 317.9 KiB openblas x86_64 0.3.29-1.fc42 fedora 111.7 KiB openblas-openmp x86_64 0.3.29-1.fc42 fedora 43.7 MiB python3-numpy-f2py x86_64 1:2.2.6-1.fc42 updates 2.0 MiB Transaction Summary: Installing: 9 packages Total size of inbound packages is 19 MiB. Need to download 19 MiB. After this operation, 101 MiB extra will be used (install 101 MiB, remove 0 B). [1/9] python3-numpy-f2py-1:2.2.6-1.fc42 100% | 17.8 MiB/s | 492.0 KiB | 00m00s [2/9] flexiblas-netlib-0:3.4.5-1.fc42.x 100% | 109.3 MiB/s | 3.4 MiB | 00m00s [3/9] python3-numpy-1:2.2.6-1.fc42.x86_ 100% | 184.5 MiB/s | 8.1 MiB | 00m00s [4/9] flexiblas-0:3.4.5-1.fc42.x86_64 100% | 1.6 MiB/s | 26.2 KiB | 00m00s [5/9] flexiblas-openblas-openmp-0:3.4.5 100% | 1.4 MiB/s | 17.3 KiB | 00m00s [6/9] libgfortran-0:15.2.1-3.fc42.x86_6 100% | 135.6 MiB/s | 971.8 KiB | 00m00s [7/9] openblas-0:0.3.29-1.fc42.x86_64 100% | 5.9 MiB/s | 42.3 KiB | 00m00s [8/9] libquadmath-0:15.2.1-3.fc42.x86_6 100% | 39.9 MiB/s | 204.2 KiB | 00m00s [9/9] openblas-openmp-0:0.3.29-1.fc42.x 100% | 206.6 MiB/s | 5.4 MiB | 00m00s -------------------------------------------------------------------------------- [9/9] Total 100% | 258.2 MiB/s | 18.6 MiB | 00m00s Running transaction [ 1/11] Verify package files 100% | 157.0 B/s | 9.0 B | 00m00s [ 2/11] Prepare transaction 100% | 346.0 B/s | 9.0 B | 00m00s [ 3/11] Installing libgfortran-0:15.2.1 100% | 373.2 MiB/s | 3.4 MiB | 00m00s [ 4/11] Installing libquadmath-0:15.2.1 100% | 311.6 MiB/s | 319.0 KiB | 00m00s [ 5/11] Installing openblas-0:0.3.29-1. 100% | 110.8 MiB/s | 113.5 KiB | 00m00s [ 6/11] Installing openblas-openmp-0:0. 100% | 590.8 MiB/s | 43.7 MiB | 00m00s [ 7/11] Installing flexiblas-0:3.4.5-1. 100% | 0.0 B/s | 51.6 KiB | 00m00s [ 8/11] Installing flexiblas-openblas-o 100% | 0.0 B/s | 40.1 KiB | 00m00s [ 9/11] Installing flexiblas-netlib-0:3 100% | 260.4 MiB/s | 10.9 MiB | 00m00s [10/11] Installing python3-numpy-f2py-1 100% | 76.7 MiB/s | 2.1 MiB | 00m00s [11/11] Installing python3-numpy-1:2.2. 100% | 251.9 MiB/s | 40.6 MiB | 00m00s Complete! Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1761609600 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.Zz6iWs + umask 022 + cd /builddir/build/BUILD/python-biopython-1.86-build + cd biopython-1.86 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir + RPM_TOXENV=py313 + FEDORA=42 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-biopython-1.86-build/pyproject-wheeldir --output /builddir/build/BUILD/python-biopython-1.86-build/python-biopython-1.86-1.fc42.x86_64-pyproject-buildrequires Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 74.1.3) running egg_info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Doc/_build' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file 'biopython.egg-info/SOURCES.txt' running dist_info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Doc/_build' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file 'biopython.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-biopython-1.86-build/biopython-1.86/biopython-1.86.dist-info' Handling numpy from hook generated metadata: Requires-Dist (biopython) Requirement satisfied: numpy (installed: numpy 2.2.6) + cat /builddir/build/BUILD/python-biopython-1.86-build/python-biopython-1.86-1.fc42.x86_64-pyproject-buildrequires + rm -rfv biopython-1.86.dist-info/ removed 'biopython-1.86.dist-info/LICENSE.rst' removed 'biopython-1.86.dist-info/LICENSE' removed 'biopython-1.86.dist-info/METADATA' removed 'biopython-1.86.dist-info/top_level.txt' removed directory 'biopython-1.86.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-biopython-1.86-1.fc42.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: Copr repository 100% | 140.0 KiB/s | 1.5 KiB | 00m00s fedora 100% | 150.4 KiB/s | 31.9 KiB | 00m00s updates 100% | 275.6 KiB/s | 29.5 KiB | 00m00s Repositories loaded. Nothing to do. Package "gcc-15.2.1-3.fc42.x86_64" is already installed. Package "pyproject-rpm-macros-1.18.4-1.fc42.noarch" is already installed. Package "python3-devel-3.13.9-1.fc42.x86_64" is already installed. Package "python3-numpy-1:2.2.6-1.fc42.x86_64" is already installed. Package "python3-packaging-25.0-1.fc42.noarch" is already installed. Package "python3-pip-24.3.1-5.fc42.noarch" is already installed. Package "python3-setuptools-74.1.3-7.fc42.noarch" is already installed. Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1761609600 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.zvjNgS + umask 022 + cd /builddir/build/BUILD/python-biopython-1.86-build + cd biopython-1.86 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir + RPM_TOXENV=py313 + FEDORA=42 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-biopython-1.86-build/pyproject-wheeldir --output /builddir/build/BUILD/python-biopython-1.86-build/python-biopython-1.86-1.fc42.x86_64-pyproject-buildrequires Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 74.1.3) running egg_info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Doc/_build' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file 'biopython.egg-info/SOURCES.txt' running dist_info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Doc/_build' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file 'biopython.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-biopython-1.86-build/biopython-1.86/biopython-1.86.dist-info' Handling numpy from hook generated metadata: Requires-Dist (biopython) Requirement satisfied: numpy (installed: numpy 2.2.6) + cat /builddir/build/BUILD/python-biopython-1.86-build/python-biopython-1.86-1.fc42.x86_64-pyproject-buildrequires + rm -rfv biopython-1.86.dist-info/ removed 'biopython-1.86.dist-info/LICENSE.rst' removed 'biopython-1.86.dist-info/LICENSE' removed 'biopython-1.86.dist-info/METADATA' removed 'biopython-1.86.dist-info/top_level.txt' removed directory 'biopython-1.86.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.PkBPGW + umask 022 + cd /builddir/build/BUILD/python-biopython-1.86-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd biopython-1.86 + mkdir -p /builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/python-biopython-1.86-build/pyproject-wheeldir Processing /builddir/build/BUILD/python-biopython-1.86-build/biopython-1.86 Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) running dist_info creating /builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir/pip-modern-metadata-c4bwgeya/biopython.egg-info writing /builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir/pip-modern-metadata-c4bwgeya/biopython.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir/pip-modern-metadata-c4bwgeya/biopython.egg-info/dependency_links.txt writing requirements to /builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir/pip-modern-metadata-c4bwgeya/biopython.egg-info/requires.txt writing top-level names to /builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir/pip-modern-metadata-c4bwgeya/biopython.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir/pip-modern-metadata-c4bwgeya/biopython.egg-info/SOURCES.txt' reading manifest file '/builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir/pip-modern-metadata-c4bwgeya/biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Doc/_build' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file '/builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir/pip-modern-metadata-c4bwgeya/biopython.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir/pip-modern-metadata-c4bwgeya/biopython-1.86.dist-info' Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: biopython Building wheel for biopython (pyproject.toml): started Running command Building wheel for biopython (pyproject.toml) running bdist_wheel running build running build_py creating build creating build/lib.linux-x86_64-cpython-313 creating build/lib.linux-x86_64-cpython-313/Bio copying Bio/pairwise2.py -> build/lib.linux-x86_64-cpython-313/Bio copying Bio/bgzf.py -> build/lib.linux-x86_64-cpython-313/Bio copying Bio/_utils.py -> build/lib.linux-x86_64-cpython-313/Bio copying Bio/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio copying Bio/SeqRecord.py -> build/lib.linux-x86_64-cpython-313/Bio copying Bio/SeqFeature.py -> build/lib.linux-x86_64-cpython-313/Bio copying Bio/Seq.py -> build/lib.linux-x86_64-cpython-313/Bio copying Bio/File.py -> build/lib.linux-x86_64-cpython-313/Bio creating build/lib.linux-x86_64-cpython-313/Bio/Affy copying Bio/Affy/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/Affy copying Bio/Affy/CelFile.py -> build/lib.linux-x86_64-cpython-313/Bio/Affy creating build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/tabular.py -> build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/stockholm.py -> build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/sam.py -> build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/psl.py -> build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/phylip.py -> build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/nexus.py -> build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/msf.py -> build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/mauve.py -> build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/maf.py -> build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/interfaces.py -> build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/hhr.py -> build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/fasta.py -> build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/exonerate.py -> build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/emboss.py -> build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/clustal.py -> build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/chain.py -> build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/bigpsl.py -> build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/bigmaf.py -> build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/bigbed.py -> build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/bed.py -> build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/analysis.py -> build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/a2m.py -> build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/AlignInfo.py -> build/lib.linux-x86_64-cpython-313/Bio/Align creating build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices copying Bio/Align/substitution_matrices/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices creating build/lib.linux-x86_64-cpython-313/Bio/AlignIO copying Bio/AlignIO/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/AlignIO copying Bio/AlignIO/StockholmIO.py -> build/lib.linux-x86_64-cpython-313/Bio/AlignIO copying Bio/AlignIO/PhylipIO.py -> build/lib.linux-x86_64-cpython-313/Bio/AlignIO copying Bio/AlignIO/NexusIO.py -> build/lib.linux-x86_64-cpython-313/Bio/AlignIO copying Bio/AlignIO/MsfIO.py -> build/lib.linux-x86_64-cpython-313/Bio/AlignIO copying Bio/AlignIO/MauveIO.py -> build/lib.linux-x86_64-cpython-313/Bio/AlignIO copying Bio/AlignIO/MafIO.py -> build/lib.linux-x86_64-cpython-313/Bio/AlignIO copying Bio/AlignIO/Interfaces.py -> build/lib.linux-x86_64-cpython-313/Bio/AlignIO copying Bio/AlignIO/FastaIO.py -> build/lib.linux-x86_64-cpython-313/Bio/AlignIO copying Bio/AlignIO/EmbossIO.py -> build/lib.linux-x86_64-cpython-313/Bio/AlignIO copying Bio/AlignIO/ClustalIO.py -> build/lib.linux-x86_64-cpython-313/Bio/AlignIO creating build/lib.linux-x86_64-cpython-313/Bio/Alphabet copying Bio/Alphabet/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/Alphabet creating build/lib.linux-x86_64-cpython-313/Bio/Blast copying Bio/Blast/_writers.py -> build/lib.linux-x86_64-cpython-313/Bio/Blast copying Bio/Blast/_parser.py -> build/lib.linux-x86_64-cpython-313/Bio/Blast copying Bio/Blast/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/Blast copying Bio/Blast/NCBIXML.py -> build/lib.linux-x86_64-cpython-313/Bio/Blast copying Bio/Blast/NCBIWWW.py -> build/lib.linux-x86_64-cpython-313/Bio/Blast creating build/lib.linux-x86_64-cpython-313/Bio/CAPS copying Bio/CAPS/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/CAPS creating build/lib.linux-x86_64-cpython-313/Bio/Cluster copying Bio/Cluster/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/Cluster creating build/lib.linux-x86_64-cpython-313/Bio/codonalign copying Bio/codonalign/codonseq.py -> build/lib.linux-x86_64-cpython-313/Bio/codonalign copying Bio/codonalign/codonalignment.py -> build/lib.linux-x86_64-cpython-313/Bio/codonalign copying Bio/codonalign/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/codonalign creating build/lib.linux-x86_64-cpython-313/Bio/Compass copying Bio/Compass/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/Compass creating build/lib.linux-x86_64-cpython-313/Bio/Data copying Bio/Data/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/Data copying Bio/Data/PDBData.py -> build/lib.linux-x86_64-cpython-313/Bio/Data copying Bio/Data/IUPACData.py -> build/lib.linux-x86_64-cpython-313/Bio/Data copying Bio/Data/CodonTable.py -> build/lib.linux-x86_64-cpython-313/Bio/Data creating build/lib.linux-x86_64-cpython-313/Bio/Emboss copying Bio/Emboss/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/Emboss copying Bio/Emboss/PrimerSearch.py -> build/lib.linux-x86_64-cpython-313/Bio/Emboss copying Bio/Emboss/Primer3.py -> build/lib.linux-x86_64-cpython-313/Bio/Emboss creating build/lib.linux-x86_64-cpython-313/Bio/Entrez copying Bio/Entrez/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/Entrez copying Bio/Entrez/Parser.py -> build/lib.linux-x86_64-cpython-313/Bio/Entrez creating build/lib.linux-x86_64-cpython-313/Bio/ExPASy copying Bio/ExPASy/cellosaurus.py -> build/lib.linux-x86_64-cpython-313/Bio/ExPASy copying Bio/ExPASy/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/ExPASy copying Bio/ExPASy/ScanProsite.py -> build/lib.linux-x86_64-cpython-313/Bio/ExPASy copying Bio/ExPASy/Prosite.py -> build/lib.linux-x86_64-cpython-313/Bio/ExPASy copying Bio/ExPASy/Prodoc.py -> build/lib.linux-x86_64-cpython-313/Bio/ExPASy copying Bio/ExPASy/Enzyme.py -> build/lib.linux-x86_64-cpython-313/Bio/ExPASy creating build/lib.linux-x86_64-cpython-313/Bio/GenBank copying Bio/GenBank/utils.py -> build/lib.linux-x86_64-cpython-313/Bio/GenBank copying Bio/GenBank/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/GenBank copying Bio/GenBank/Scanner.py -> build/lib.linux-x86_64-cpython-313/Bio/GenBank copying Bio/GenBank/Record.py -> build/lib.linux-x86_64-cpython-313/Bio/GenBank creating build/lib.linux-x86_64-cpython-313/Bio/Geo copying Bio/Geo/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/Geo copying Bio/Geo/Record.py -> build/lib.linux-x86_64-cpython-313/Bio/Geo creating build/lib.linux-x86_64-cpython-313/Bio/Graphics copying Bio/Graphics/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/Graphics copying Bio/Graphics/KGML_vis.py -> build/lib.linux-x86_64-cpython-313/Bio/Graphics copying Bio/Graphics/Distribution.py -> build/lib.linux-x86_64-cpython-313/Bio/Graphics copying Bio/Graphics/DisplayRepresentation.py -> build/lib.linux-x86_64-cpython-313/Bio/Graphics copying Bio/Graphics/Comparative.py -> build/lib.linux-x86_64-cpython-313/Bio/Graphics copying Bio/Graphics/ColorSpiral.py -> build/lib.linux-x86_64-cpython-313/Bio/Graphics copying Bio/Graphics/BasicChromosome.py -> build/lib.linux-x86_64-cpython-313/Bio/Graphics creating build/lib.linux-x86_64-cpython-313/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Track.py -> build/lib.linux-x86_64-cpython-313/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/lib.linux-x86_64-cpython-313/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/lib.linux-x86_64-cpython-313/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Graph.py -> build/lib.linux-x86_64-cpython-313/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/lib.linux-x86_64-cpython-313/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Feature.py -> build/lib.linux-x86_64-cpython-313/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Diagram.py -> build/lib.linux-x86_64-cpython-313/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/lib.linux-x86_64-cpython-313/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Colors.py -> build/lib.linux-x86_64-cpython-313/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/lib.linux-x86_64-cpython-313/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/lib.linux-x86_64-cpython-313/Bio/Graphics/GenomeDiagram creating build/lib.linux-x86_64-cpython-313/Bio/HMM copying Bio/HMM/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/HMM creating build/lib.linux-x86_64-cpython-313/Bio/KEGG copying Bio/KEGG/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/KEGG copying Bio/KEGG/REST.py -> build/lib.linux-x86_64-cpython-313/Bio/KEGG creating build/lib.linux-x86_64-cpython-313/Bio/KEGG/Compound copying Bio/KEGG/Compound/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/KEGG/Compound creating build/lib.linux-x86_64-cpython-313/Bio/KEGG/Enzyme copying Bio/KEGG/Enzyme/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/KEGG/Enzyme creating build/lib.linux-x86_64-cpython-313/Bio/KEGG/Gene copying Bio/KEGG/Gene/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/KEGG/Gene creating build/lib.linux-x86_64-cpython-313/Bio/KEGG/Map copying Bio/KEGG/Map/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/KEGG/Map creating build/lib.linux-x86_64-cpython-313/Bio/PDB creating build/lib.linux-x86_64-cpython-313/Bio/PDB/mmtf copying Bio/PDB/mmtf/mmtfio.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB/mmtf copying Bio/PDB/mmtf/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB/mmtf copying Bio/PDB/mmtf/DefaultParser.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB/mmtf creating build/lib.linux-x86_64-cpython-313/Bio/KEGG/KGML copying Bio/KEGG/KGML/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_pathway.py -> build/lib.linux-x86_64-cpython-313/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_parser.py -> build/lib.linux-x86_64-cpython-313/Bio/KEGG/KGML creating build/lib.linux-x86_64-cpython-313/Bio/Medline copying Bio/Medline/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/Medline creating build/lib.linux-x86_64-cpython-313/Bio/motifs copying Bio/motifs/xms.py -> build/lib.linux-x86_64-cpython-313/Bio/motifs copying Bio/motifs/transfac.py -> build/lib.linux-x86_64-cpython-313/Bio/motifs copying Bio/motifs/thresholds.py -> build/lib.linux-x86_64-cpython-313/Bio/motifs copying Bio/motifs/pfm.py -> build/lib.linux-x86_64-cpython-313/Bio/motifs copying Bio/motifs/minimal.py -> build/lib.linux-x86_64-cpython-313/Bio/motifs copying Bio/motifs/meme.py -> build/lib.linux-x86_64-cpython-313/Bio/motifs copying Bio/motifs/matrix.py -> build/lib.linux-x86_64-cpython-313/Bio/motifs copying Bio/motifs/mast.py -> build/lib.linux-x86_64-cpython-313/Bio/motifs copying Bio/motifs/clusterbuster.py -> build/lib.linux-x86_64-cpython-313/Bio/motifs copying Bio/motifs/alignace.py -> build/lib.linux-x86_64-cpython-313/Bio/motifs copying Bio/motifs/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/motifs creating build/lib.linux-x86_64-cpython-313/Bio/motifs/jaspar copying Bio/motifs/jaspar/db.py -> build/lib.linux-x86_64-cpython-313/Bio/motifs/jaspar copying Bio/motifs/jaspar/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/motifs/jaspar creating build/lib.linux-x86_64-cpython-313/Bio/Nexus copying Bio/Nexus/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/Nexus copying Bio/Nexus/Trees.py -> build/lib.linux-x86_64-cpython-313/Bio/Nexus copying Bio/Nexus/StandardData.py -> build/lib.linux-x86_64-cpython-313/Bio/Nexus copying Bio/Nexus/Nodes.py -> build/lib.linux-x86_64-cpython-313/Bio/Nexus copying Bio/Nexus/Nexus.py -> build/lib.linux-x86_64-cpython-313/Bio/Nexus creating build/lib.linux-x86_64-cpython-313/Bio/NMR copying Bio/NMR/xpktools.py -> build/lib.linux-x86_64-cpython-313/Bio/NMR copying Bio/NMR/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/NMR copying Bio/NMR/NOEtools.py -> build/lib.linux-x86_64-cpython-313/Bio/NMR creating build/lib.linux-x86_64-cpython-313/Bio/Pathway copying Bio/Pathway/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/Pathway creating build/lib.linux-x86_64-cpython-313/Bio/Pathway/Rep copying Bio/Pathway/Rep/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/Pathway/Rep copying Bio/Pathway/Rep/MultiGraph.py -> build/lib.linux-x86_64-cpython-313/Bio/Pathway/Rep copying Bio/Pathway/Rep/Graph.py -> build/lib.linux-x86_64-cpython-313/Bio/Pathway/Rep copying Bio/PDB/vectors.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/qcprot.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/parse_pdb_header.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/mmcifio.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/internal_coords.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/ic_rebuild.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/ic_data.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/cealign.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/binary_cif.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/alphafold_db.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/Superimposer.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/StructureBuilder.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/StructureAlignment.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/Structure.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/Selection.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/SCADIO.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/SASA.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/ResidueDepth.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/Residue.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/Polypeptide.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/PSEA.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/PICIO.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/PDBParser.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/PDBMLParser.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/PDBList.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/PDBIO.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/PDBExceptions.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/NeighborSearch.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/NACCESS.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/Model.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/MMCIFParser.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/MMCIF2Dict.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/HSExposure.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/FragmentMapper.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/Entity.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/Dice.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/DSSP.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/Chain.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/Atom.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/AbstractPropertyMap.py -> build/lib.linux-x86_64-cpython-313/Bio/PDB creating build/lib.linux-x86_64-cpython-313/Bio/phenotype copying Bio/phenotype/pm_fitting.py -> build/lib.linux-x86_64-cpython-313/Bio/phenotype copying Bio/phenotype/phen_micro.py -> build/lib.linux-x86_64-cpython-313/Bio/phenotype copying Bio/phenotype/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/phenotype creating build/lib.linux-x86_64-cpython-313/Bio/PopGen copying Bio/PopGen/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/PopGen creating build/lib.linux-x86_64-cpython-313/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/LargeFileParser.py -> build/lib.linux-x86_64-cpython-313/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/FileParser.py -> build/lib.linux-x86_64-cpython-313/Bio/PopGen/GenePop creating build/lib.linux-x86_64-cpython-313/Bio/Restriction copying Bio/Restriction/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/Restriction copying Bio/Restriction/Restriction_Dictionary.py -> build/lib.linux-x86_64-cpython-313/Bio/Restriction copying Bio/Restriction/Restriction.py -> build/lib.linux-x86_64-cpython-313/Bio/Restriction copying Bio/Restriction/PrintFormat.py -> build/lib.linux-x86_64-cpython-313/Bio/Restriction creating build/lib.linux-x86_64-cpython-313/Bio/SCOP copying Bio/SCOP/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/SCOP copying Bio/SCOP/Residues.py -> build/lib.linux-x86_64-cpython-313/Bio/SCOP copying Bio/SCOP/Raf.py -> build/lib.linux-x86_64-cpython-313/Bio/SCOP copying Bio/SCOP/Hie.py -> build/lib.linux-x86_64-cpython-313/Bio/SCOP copying Bio/SCOP/Dom.py -> build/lib.linux-x86_64-cpython-313/Bio/SCOP copying Bio/SCOP/Des.py -> build/lib.linux-x86_64-cpython-313/Bio/SCOP copying Bio/SCOP/Cla.py -> build/lib.linux-x86_64-cpython-313/Bio/SCOP creating build/lib.linux-x86_64-cpython-313/Bio/SearchIO copying Bio/SearchIO/_utils.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO copying Bio/SearchIO/_index.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO copying Bio/SearchIO/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO copying Bio/SearchIO/FastaIO.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO copying Bio/SearchIO/BlatIO.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO creating build/lib.linux-x86_64-cpython-313/Bio/SearchIO/_model copying Bio/SearchIO/_model/query.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO/_model copying Bio/SearchIO/_model/hsp.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO/_model copying Bio/SearchIO/_model/hit.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO/_model copying Bio/SearchIO/_model/_base.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO/_model copying Bio/SearchIO/_model/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO/_model creating build/lib.linux-x86_64-cpython-313/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_xml.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_tab.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO/BlastIO creating build/lib.linux-x86_64-cpython-313/Bio/SearchIO/HHsuiteIO copying Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO/HHsuiteIO copying Bio/SearchIO/HHsuiteIO/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO/HHsuiteIO creating build/lib.linux-x86_64-cpython-313/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/_base.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO/HmmerIO creating build/lib.linux-x86_64-cpython-313/Bio/SearchIO/InfernalIO copying Bio/SearchIO/InfernalIO/infernal_text.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO/InfernalIO copying Bio/SearchIO/InfernalIO/infernal_tab.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO/InfernalIO copying Bio/SearchIO/InfernalIO/_base.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO/InfernalIO copying Bio/SearchIO/InfernalIO/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO/InfernalIO creating build/lib.linux-x86_64-cpython-313/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/_base.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO/ExonerateIO creating build/lib.linux-x86_64-cpython-313/Bio/SearchIO/InterproscanIO copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO/InterproscanIO copying Bio/SearchIO/InterproscanIO/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/SearchIO/InterproscanIO creating build/lib.linux-x86_64-cpython-313/Bio/SeqIO copying Bio/SeqIO/_index.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqIO copying Bio/SeqIO/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqIO copying Bio/SeqIO/XdnaIO.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqIO copying Bio/SeqIO/UniprotIO.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqIO copying Bio/SeqIO/TwoBitIO.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqIO copying Bio/SeqIO/TabIO.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqIO copying Bio/SeqIO/SwissIO.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqIO copying Bio/SeqIO/SnapGeneIO.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqIO copying Bio/SeqIO/SffIO.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqIO copying Bio/SeqIO/SeqXmlIO.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqIO copying Bio/SeqIO/QualityIO.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqIO copying Bio/SeqIO/PirIO.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqIO copying Bio/SeqIO/PhdIO.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqIO copying Bio/SeqIO/PdbIO.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqIO copying Bio/SeqIO/NibIO.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqIO copying Bio/SeqIO/Interfaces.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqIO copying Bio/SeqIO/InsdcIO.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqIO copying Bio/SeqIO/IgIO.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqIO copying Bio/SeqIO/GfaIO.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqIO copying Bio/SeqIO/GckIO.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqIO copying Bio/SeqIO/FastaIO.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqIO copying Bio/SeqIO/AceIO.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqIO copying Bio/SeqIO/AbiIO.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqIO creating build/lib.linux-x86_64-cpython-313/Bio/SeqUtils copying Bio/SeqUtils/lcc.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqUtils copying Bio/SeqUtils/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqUtils copying Bio/SeqUtils/ProtParamData.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqUtils copying Bio/SeqUtils/ProtParam.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqUtils copying Bio/SeqUtils/MeltingTemp.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqUtils copying Bio/SeqUtils/IsoelectricPoint.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqUtils copying Bio/SeqUtils/CheckSum.py -> build/lib.linux-x86_64-cpython-313/Bio/SeqUtils creating build/lib.linux-x86_64-cpython-313/Bio/Sequencing copying Bio/Sequencing/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/Sequencing copying Bio/Sequencing/Phd.py -> build/lib.linux-x86_64-cpython-313/Bio/Sequencing copying Bio/Sequencing/Ace.py -> build/lib.linux-x86_64-cpython-313/Bio/Sequencing creating build/lib.linux-x86_64-cpython-313/Bio/SVDSuperimposer copying Bio/SVDSuperimposer/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/SVDSuperimposer creating build/lib.linux-x86_64-cpython-313/Bio/SwissProt copying Bio/SwissProt/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/SwissProt copying Bio/SwissProt/KeyWList.py -> build/lib.linux-x86_64-cpython-313/Bio/SwissProt creating build/lib.linux-x86_64-cpython-313/Bio/TogoWS copying Bio/TogoWS/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/TogoWS creating build/lib.linux-x86_64-cpython-313/Bio/Phylo copying Bio/Phylo/_utils.py -> build/lib.linux-x86_64-cpython-313/Bio/Phylo copying Bio/Phylo/_io.py -> build/lib.linux-x86_64-cpython-313/Bio/Phylo copying Bio/Phylo/_cdao_owl.py -> build/lib.linux-x86_64-cpython-313/Bio/Phylo copying Bio/Phylo/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/Phylo copying Bio/Phylo/TreeConstruction.py -> build/lib.linux-x86_64-cpython-313/Bio/Phylo copying Bio/Phylo/PhyloXMLIO.py -> build/lib.linux-x86_64-cpython-313/Bio/Phylo copying Bio/Phylo/PhyloXML.py -> build/lib.linux-x86_64-cpython-313/Bio/Phylo copying Bio/Phylo/NexusIO.py -> build/lib.linux-x86_64-cpython-313/Bio/Phylo copying Bio/Phylo/NewickIO.py -> build/lib.linux-x86_64-cpython-313/Bio/Phylo copying Bio/Phylo/Newick.py -> build/lib.linux-x86_64-cpython-313/Bio/Phylo copying Bio/Phylo/NeXMLIO.py -> build/lib.linux-x86_64-cpython-313/Bio/Phylo copying Bio/Phylo/NeXML.py -> build/lib.linux-x86_64-cpython-313/Bio/Phylo copying Bio/Phylo/Consensus.py -> build/lib.linux-x86_64-cpython-313/Bio/Phylo copying Bio/Phylo/CDAOIO.py -> build/lib.linux-x86_64-cpython-313/Bio/Phylo copying Bio/Phylo/CDAO.py -> build/lib.linux-x86_64-cpython-313/Bio/Phylo copying Bio/Phylo/BaseTree.py -> build/lib.linux-x86_64-cpython-313/Bio/Phylo creating build/lib.linux-x86_64-cpython-313/Bio/Phylo/PAML copying Bio/Phylo/PAML/yn00.py -> build/lib.linux-x86_64-cpython-313/Bio/Phylo/PAML copying Bio/Phylo/PAML/codeml.py -> build/lib.linux-x86_64-cpython-313/Bio/Phylo/PAML copying Bio/Phylo/PAML/chi2.py -> build/lib.linux-x86_64-cpython-313/Bio/Phylo/PAML copying Bio/Phylo/PAML/baseml.py -> build/lib.linux-x86_64-cpython-313/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_yn00.py -> build/lib.linux-x86_64-cpython-313/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_codeml.py -> build/lib.linux-x86_64-cpython-313/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_baseml.py -> build/lib.linux-x86_64-cpython-313/Bio/Phylo/PAML copying Bio/Phylo/PAML/_paml.py -> build/lib.linux-x86_64-cpython-313/Bio/Phylo/PAML copying Bio/Phylo/PAML/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/Phylo/PAML creating build/lib.linux-x86_64-cpython-313/Bio/UniGene copying Bio/UniGene/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/UniGene creating build/lib.linux-x86_64-cpython-313/Bio/UniProt copying Bio/UniProt/__init__.py -> build/lib.linux-x86_64-cpython-313/Bio/UniProt copying Bio/UniProt/GOA.py -> build/lib.linux-x86_64-cpython-313/Bio/UniProt creating build/lib.linux-x86_64-cpython-313/BioSQL copying BioSQL/__init__.py -> build/lib.linux-x86_64-cpython-313/BioSQL copying BioSQL/Loader.py -> build/lib.linux-x86_64-cpython-313/BioSQL copying BioSQL/DBUtils.py -> build/lib.linux-x86_64-cpython-313/BioSQL copying BioSQL/BioSeqDatabase.py -> build/lib.linux-x86_64-cpython-313/BioSQL copying BioSQL/BioSeq.py -> build/lib.linux-x86_64-cpython-313/BioSQL running egg_info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Doc/_build' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file 'biopython.egg-info/SOURCES.txt' /usr/lib/python3.13/site-packages/setuptools/command/build_py.py:218: _Warning: Package 'Bio.Align.substitution_matrices' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Align.substitution_matrices' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Align.substitution_matrices' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Align.substitution_matrices' to be distributed and are already explicitly excluding 'Bio.Align.substitution_matrices' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) copying Bio/cpairwise2module.c -> build/lib.linux-x86_64-cpython-313/Bio copying Bio/py.typed -> build/lib.linux-x86_64-cpython-313/Bio copying Bio/Align/_aligncore.c -> build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/_alignmentcounts.c -> build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/_codonaligner.c -> build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/_pairwisealigner.c -> build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/_pairwisealigner.h -> build/lib.linux-x86_64-cpython-313/Bio/Align copying Bio/Align/substitution_matrices/_arraycore.c -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices copying Bio/Align/substitution_matrices/_arraycore.h -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices creating build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER22 -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER6 -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER74 -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLASTN -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLASTP -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM45 -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM50 -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM62 -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM80 -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM90 -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/DAYHOFF -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/FENG -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/GENETIC -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/GONNET1992 -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/HOXD70 -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/JOHNSON -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/JONES -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/LEVIN -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/MCLACHLAN -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/MDM78 -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/MEGABLAST -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/NUC.4.4 -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM250 -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM30 -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM70 -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/RAO -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/RISLER -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/SCHNEIDER -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/STR -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/TRANS -> build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data copying Bio/Cluster/cluster.c -> build/lib.linux-x86_64-cpython-313/Bio/Cluster copying Bio/Cluster/cluster.h -> build/lib.linux-x86_64-cpython-313/Bio/Cluster copying Bio/Cluster/clustermodule.c -> build/lib.linux-x86_64-cpython-313/Bio/Cluster creating build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-common1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-display1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-format1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-funding1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-link1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-list1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-math1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-modules1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-notat1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-para1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-phrase1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-references1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-related-object1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-section1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Access.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cdd.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_General.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medlars.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mime.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Project.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Protein.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Pub.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PubMed.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Remap.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Rsite.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqres.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Submit.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Systems.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TxInit.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Variation.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_all.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NSE.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NSE.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/OMSSA.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/OMSSA.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PIR_General.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PIR_General.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/SP_General.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/SP_General.mod.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/XHTMLtablesetup.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivearticle.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-classes.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-mixes.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-models.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-modules.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/articlemeta.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/backmatter.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_100301.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_110101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_120101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_130101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_140101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_150101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/chars.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/common.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-classes.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-mixes.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/display.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eInfo_020511.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eLink_090910.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eLink_101123.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/ePost_020511.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSearch_020511.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSpell.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSummary_041029.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/egquery.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/einfo.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/elink.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/elink_020122.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/epost.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esearch.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esummary-v1.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esummary_clinvar.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esummary_gene.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/format.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/htmltable.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsa.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsb.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsc.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsn.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamso.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsr.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isobox.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr1.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr2.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isodia.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk1.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk2.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk3.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk4.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat1.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat2.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomfrk.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomopf.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomscr.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isonum.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isopub.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isotech.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/journalmeta.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/link.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/list.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/math.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml2.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml3-qname1.mod -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml3.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathmlsetup.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlalias.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlextra.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/modules.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/notat.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/para.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/phrase.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pmc-1.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_020114.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_080101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_090101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100301.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_110101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_120101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_130101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_130501.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_140101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_150101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_180101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_180601.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_190101.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/references.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/section.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/taxon.dtd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/xhtml-table-1.mod -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/xmlspecchars.ent -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs creating build/lib.linux-x86_64-cpython-313/Bio/Entrez/XSDs copying Bio/Entrez/XSDs/IPGReportSet.xsd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/XSDs copying Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/XSDs copying Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/lib.linux-x86_64-cpython-313/Bio/Entrez/XSDs copying Bio/motifs/_pwm.c -> build/lib.linux-x86_64-cpython-313/Bio/motifs copying Bio/Nexus/cnexus.c -> build/lib.linux-x86_64-cpython-313/Bio/Nexus copying Bio/PDB/bcifhelpermodule.c -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/ccealignmodule.c -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/PDB/kdtrees.c -> build/lib.linux-x86_64-cpython-313/Bio/PDB copying Bio/SeqIO/_twoBitIO.c -> build/lib.linux-x86_64-cpython-313/Bio/SeqIO copying BioSQL/py.typed -> build/lib.linux-x86_64-cpython-313/BioSQL running build_ext building 'Bio.Align._aligncore' extension creating build/temp.linux-x86_64-cpython-313 creating build/temp.linux-x86_64-cpython-313/Bio creating build/temp.linux-x86_64-cpython-313/Bio/Align gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/include/python3.13 -c Bio/Align/_aligncore.c -o build/temp.linux-x86_64-cpython-313/Bio/Align/_aligncore.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/Bio/Align/_aligncore.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-313/Bio/Align/_aligncore.cpython-313-x86_64-linux-gnu.so building 'Bio.Align._alignmentcounts' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/include/python3.13 -c Bio/Align/_alignmentcounts.c -o build/temp.linux-x86_64-cpython-313/Bio/Align/_alignmentcounts.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/Bio/Align/_alignmentcounts.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-313/Bio/Align/_alignmentcounts.cpython-313-x86_64-linux-gnu.so building 'Bio.Align._codonaligner' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/include/python3.13 -c Bio/Align/_codonaligner.c -o build/temp.linux-x86_64-cpython-313/Bio/Align/_codonaligner.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/Bio/Align/_codonaligner.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-313/Bio/Align/_codonaligner.cpython-313-x86_64-linux-gnu.so building 'Bio.Align._pairwisealigner' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/include/python3.13 -c Bio/Align/_pairwisealigner.c -o build/temp.linux-x86_64-cpython-313/Bio/Align/_pairwisealigner.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/Bio/Align/_pairwisealigner.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-313/Bio/Align/_pairwisealigner.cpython-313-x86_64-linux-gnu.so building 'Bio.Align.substitution_matrices._arraycore' extension creating build/temp.linux-x86_64-cpython-313/Bio/Align/substitution_matrices gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/include/python3.13 -c Bio/Align//substitution_matrices/_arraycore.c -o build/temp.linux-x86_64-cpython-313/Bio/Align//substitution_matrices/_arraycore.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/Bio/Align//substitution_matrices/_arraycore.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/_arraycore.cpython-313-x86_64-linux-gnu.so building 'Bio.cpairwise2' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/include/python3.13 -c Bio/cpairwise2module.c -o build/temp.linux-x86_64-cpython-313/Bio/cpairwise2module.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/Bio/cpairwise2module.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-313/Bio/cpairwise2.cpython-313-x86_64-linux-gnu.so building 'Bio.Nexus.cnexus' extension creating build/temp.linux-x86_64-cpython-313/Bio/Nexus gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/include/python3.13 -c Bio/Nexus/cnexus.c -o build/temp.linux-x86_64-cpython-313/Bio/Nexus/cnexus.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/Bio/Nexus/cnexus.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-313/Bio/Nexus/cnexus.cpython-313-x86_64-linux-gnu.so building 'Bio.motifs._pwm' extension creating build/temp.linux-x86_64-cpython-313/Bio/motifs gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/include/python3.13 -c Bio/motifs/_pwm.c -o build/temp.linux-x86_64-cpython-313/Bio/motifs/_pwm.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/Bio/motifs/_pwm.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-313/Bio/motifs/_pwm.cpython-313-x86_64-linux-gnu.so building 'Bio.Cluster._cluster' extension creating build/temp.linux-x86_64-cpython-313/Bio/Cluster gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/include/python3.13 -c Bio/Cluster/cluster.c -o build/temp.linux-x86_64-cpython-313/Bio/Cluster/cluster.o -DCLUSTER_USE_PYTHON_MEMORY gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/include/python3.13 -c Bio/Cluster/clustermodule.c -o build/temp.linux-x86_64-cpython-313/Bio/Cluster/clustermodule.o -DCLUSTER_USE_PYTHON_MEMORY gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/Bio/Cluster/cluster.o build/temp.linux-x86_64-cpython-313/Bio/Cluster/clustermodule.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-313/Bio/Cluster/_cluster.cpython-313-x86_64-linux-gnu.so building 'Bio.PDB.ccealign' extension creating build/temp.linux-x86_64-cpython-313/Bio/PDB gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/include/python3.13 -c Bio/PDB/ccealignmodule.c -o build/temp.linux-x86_64-cpython-313/Bio/PDB/ccealignmodule.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/Bio/PDB/ccealignmodule.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-313/Bio/PDB/ccealign.cpython-313-x86_64-linux-gnu.so building 'Bio.PDB.kdtrees' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/include/python3.13 -c Bio/PDB/kdtrees.c -o build/temp.linux-x86_64-cpython-313/Bio/PDB/kdtrees.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/Bio/PDB/kdtrees.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-313/Bio/PDB/kdtrees.cpython-313-x86_64-linux-gnu.so building 'Bio.PDB._bcif_helper' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/include/python3.13 -c Bio/PDB/bcifhelpermodule.c -o build/temp.linux-x86_64-cpython-313/Bio/PDB/bcifhelpermodule.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/Bio/PDB/bcifhelpermodule.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-313/Bio/PDB/_bcif_helper.cpython-313-x86_64-linux-gnu.so building 'Bio.SeqIO._twoBitIO' extension creating build/temp.linux-x86_64-cpython-313/Bio/SeqIO gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/include/python3.13 -c Bio/SeqIO/_twoBitIO.c -o build/temp.linux-x86_64-cpython-313/Bio/SeqIO/_twoBitIO.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/Bio/SeqIO/_twoBitIO.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-313/Bio/SeqIO/_twoBitIO.cpython-313-x86_64-linux-gnu.so installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/BioSQL copying build/lib.linux-x86_64-cpython-313/BioSQL/py.typed -> build/bdist.linux-x86_64/wheel/./BioSQL copying build/lib.linux-x86_64-cpython-313/BioSQL/BioSeq.py -> build/bdist.linux-x86_64/wheel/./BioSQL copying build/lib.linux-x86_64-cpython-313/BioSQL/BioSeqDatabase.py -> build/bdist.linux-x86_64/wheel/./BioSQL copying build/lib.linux-x86_64-cpython-313/BioSQL/DBUtils.py -> build/bdist.linux-x86_64/wheel/./BioSQL copying build/lib.linux-x86_64-cpython-313/BioSQL/Loader.py -> build/bdist.linux-x86_64/wheel/./BioSQL copying build/lib.linux-x86_64-cpython-313/BioSQL/__init__.py -> build/bdist.linux-x86_64/wheel/./BioSQL creating build/bdist.linux-x86_64/wheel/Bio copying build/lib.linux-x86_64-cpython-313/Bio/cpairwise2.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./Bio copying build/lib.linux-x86_64-cpython-313/Bio/py.typed -> build/bdist.linux-x86_64/wheel/./Bio copying build/lib.linux-x86_64-cpython-313/Bio/cpairwise2module.c -> build/bdist.linux-x86_64/wheel/./Bio creating build/bdist.linux-x86_64/wheel/Bio/UniProt copying build/lib.linux-x86_64-cpython-313/Bio/UniProt/GOA.py -> build/bdist.linux-x86_64/wheel/./Bio/UniProt copying build/lib.linux-x86_64-cpython-313/Bio/UniProt/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/UniProt creating build/bdist.linux-x86_64/wheel/Bio/UniGene copying build/lib.linux-x86_64-cpython-313/Bio/UniGene/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/UniGene creating build/bdist.linux-x86_64/wheel/Bio/Phylo creating build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML copying build/lib.linux-x86_64-cpython-313/Bio/Phylo/PAML/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML copying build/lib.linux-x86_64-cpython-313/Bio/Phylo/PAML/_paml.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML copying build/lib.linux-x86_64-cpython-313/Bio/Phylo/PAML/_parse_baseml.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML copying build/lib.linux-x86_64-cpython-313/Bio/Phylo/PAML/_parse_codeml.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML copying build/lib.linux-x86_64-cpython-313/Bio/Phylo/PAML/_parse_yn00.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML copying build/lib.linux-x86_64-cpython-313/Bio/Phylo/PAML/baseml.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML copying build/lib.linux-x86_64-cpython-313/Bio/Phylo/PAML/chi2.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML copying build/lib.linux-x86_64-cpython-313/Bio/Phylo/PAML/codeml.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML copying build/lib.linux-x86_64-cpython-313/Bio/Phylo/PAML/yn00.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML copying build/lib.linux-x86_64-cpython-313/Bio/Phylo/BaseTree.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo copying build/lib.linux-x86_64-cpython-313/Bio/Phylo/CDAO.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo copying build/lib.linux-x86_64-cpython-313/Bio/Phylo/CDAOIO.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo copying build/lib.linux-x86_64-cpython-313/Bio/Phylo/Consensus.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo copying build/lib.linux-x86_64-cpython-313/Bio/Phylo/NeXML.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo copying build/lib.linux-x86_64-cpython-313/Bio/Phylo/NeXMLIO.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo copying build/lib.linux-x86_64-cpython-313/Bio/Phylo/Newick.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo copying build/lib.linux-x86_64-cpython-313/Bio/Phylo/NewickIO.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo copying build/lib.linux-x86_64-cpython-313/Bio/Phylo/NexusIO.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo copying build/lib.linux-x86_64-cpython-313/Bio/Phylo/PhyloXML.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo copying build/lib.linux-x86_64-cpython-313/Bio/Phylo/PhyloXMLIO.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo copying build/lib.linux-x86_64-cpython-313/Bio/Phylo/TreeConstruction.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo copying build/lib.linux-x86_64-cpython-313/Bio/Phylo/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo copying build/lib.linux-x86_64-cpython-313/Bio/Phylo/_cdao_owl.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo copying build/lib.linux-x86_64-cpython-313/Bio/Phylo/_io.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo copying build/lib.linux-x86_64-cpython-313/Bio/Phylo/_utils.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo creating build/bdist.linux-x86_64/wheel/Bio/TogoWS copying build/lib.linux-x86_64-cpython-313/Bio/TogoWS/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/TogoWS creating build/bdist.linux-x86_64/wheel/Bio/SwissProt copying build/lib.linux-x86_64-cpython-313/Bio/SwissProt/KeyWList.py -> build/bdist.linux-x86_64/wheel/./Bio/SwissProt copying build/lib.linux-x86_64-cpython-313/Bio/SwissProt/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SwissProt creating build/bdist.linux-x86_64/wheel/Bio/SVDSuperimposer copying build/lib.linux-x86_64-cpython-313/Bio/SVDSuperimposer/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SVDSuperimposer creating build/bdist.linux-x86_64/wheel/Bio/Sequencing copying build/lib.linux-x86_64-cpython-313/Bio/Sequencing/Ace.py -> build/bdist.linux-x86_64/wheel/./Bio/Sequencing copying build/lib.linux-x86_64-cpython-313/Bio/Sequencing/Phd.py -> build/bdist.linux-x86_64/wheel/./Bio/Sequencing copying build/lib.linux-x86_64-cpython-313/Bio/Sequencing/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Sequencing creating build/bdist.linux-x86_64/wheel/Bio/SeqUtils copying build/lib.linux-x86_64-cpython-313/Bio/SeqUtils/CheckSum.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqUtils copying build/lib.linux-x86_64-cpython-313/Bio/SeqUtils/IsoelectricPoint.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqUtils copying build/lib.linux-x86_64-cpython-313/Bio/SeqUtils/MeltingTemp.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqUtils copying build/lib.linux-x86_64-cpython-313/Bio/SeqUtils/ProtParam.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqUtils copying build/lib.linux-x86_64-cpython-313/Bio/SeqUtils/ProtParamData.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqUtils copying build/lib.linux-x86_64-cpython-313/Bio/SeqUtils/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqUtils copying build/lib.linux-x86_64-cpython-313/Bio/SeqUtils/lcc.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqUtils creating build/bdist.linux-x86_64/wheel/Bio/SeqIO copying build/lib.linux-x86_64-cpython-313/Bio/SeqIO/_twoBitIO.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO copying build/lib.linux-x86_64-cpython-313/Bio/SeqIO/_twoBitIO.c -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO copying build/lib.linux-x86_64-cpython-313/Bio/SeqIO/AbiIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO copying build/lib.linux-x86_64-cpython-313/Bio/SeqIO/AceIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO copying build/lib.linux-x86_64-cpython-313/Bio/SeqIO/FastaIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO copying build/lib.linux-x86_64-cpython-313/Bio/SeqIO/GckIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO copying build/lib.linux-x86_64-cpython-313/Bio/SeqIO/GfaIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO copying build/lib.linux-x86_64-cpython-313/Bio/SeqIO/IgIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO copying build/lib.linux-x86_64-cpython-313/Bio/SeqIO/InsdcIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO copying build/lib.linux-x86_64-cpython-313/Bio/SeqIO/Interfaces.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO copying build/lib.linux-x86_64-cpython-313/Bio/SeqIO/NibIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO copying build/lib.linux-x86_64-cpython-313/Bio/SeqIO/PdbIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO copying build/lib.linux-x86_64-cpython-313/Bio/SeqIO/PhdIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO copying build/lib.linux-x86_64-cpython-313/Bio/SeqIO/PirIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO copying build/lib.linux-x86_64-cpython-313/Bio/SeqIO/QualityIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO copying build/lib.linux-x86_64-cpython-313/Bio/SeqIO/SeqXmlIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO copying build/lib.linux-x86_64-cpython-313/Bio/SeqIO/SffIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO copying build/lib.linux-x86_64-cpython-313/Bio/SeqIO/SnapGeneIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO copying build/lib.linux-x86_64-cpython-313/Bio/SeqIO/SwissIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO copying build/lib.linux-x86_64-cpython-313/Bio/SeqIO/TabIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO copying build/lib.linux-x86_64-cpython-313/Bio/SeqIO/TwoBitIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO copying build/lib.linux-x86_64-cpython-313/Bio/SeqIO/UniprotIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO copying build/lib.linux-x86_64-cpython-313/Bio/SeqIO/XdnaIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO copying build/lib.linux-x86_64-cpython-313/Bio/SeqIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO copying build/lib.linux-x86_64-cpython-313/Bio/SeqIO/_index.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/InterproscanIO copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/InterproscanIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/InterproscanIO copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/InterproscanIO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/ExonerateIO copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/ExonerateIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/ExonerateIO copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/ExonerateIO/_base.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/ExonerateIO copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/ExonerateIO copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/ExonerateIO copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/ExonerateIO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/InfernalIO copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/InfernalIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/InfernalIO copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/InfernalIO/_base.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/InfernalIO copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/InfernalIO/infernal_tab.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/InfernalIO copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/InfernalIO/infernal_text.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/InfernalIO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/HmmerIO copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/HmmerIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HmmerIO copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/HmmerIO/_base.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HmmerIO copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HmmerIO copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HmmerIO copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HmmerIO copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HmmerIO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/HHsuiteIO copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/HHsuiteIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HHsuiteIO copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HHsuiteIO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/BlastIO copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/BlastIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/BlastIO copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/BlastIO/blast_tab.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/BlastIO copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/BlastIO/blast_xml.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/BlastIO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/_model copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/_model/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/_model copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/_model/_base.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/_model copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/_model/hit.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/_model copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/_model/hsp.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/_model copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/_model/query.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/_model copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/BlatIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/FastaIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/_index.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO copying build/lib.linux-x86_64-cpython-313/Bio/SearchIO/_utils.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO creating build/bdist.linux-x86_64/wheel/Bio/SCOP copying build/lib.linux-x86_64-cpython-313/Bio/SCOP/Cla.py -> build/bdist.linux-x86_64/wheel/./Bio/SCOP copying build/lib.linux-x86_64-cpython-313/Bio/SCOP/Des.py -> build/bdist.linux-x86_64/wheel/./Bio/SCOP copying build/lib.linux-x86_64-cpython-313/Bio/SCOP/Dom.py -> build/bdist.linux-x86_64/wheel/./Bio/SCOP copying build/lib.linux-x86_64-cpython-313/Bio/SCOP/Hie.py -> build/bdist.linux-x86_64/wheel/./Bio/SCOP copying build/lib.linux-x86_64-cpython-313/Bio/SCOP/Raf.py -> build/bdist.linux-x86_64/wheel/./Bio/SCOP copying build/lib.linux-x86_64-cpython-313/Bio/SCOP/Residues.py -> build/bdist.linux-x86_64/wheel/./Bio/SCOP copying build/lib.linux-x86_64-cpython-313/Bio/SCOP/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SCOP creating build/bdist.linux-x86_64/wheel/Bio/Restriction copying build/lib.linux-x86_64-cpython-313/Bio/Restriction/PrintFormat.py -> build/bdist.linux-x86_64/wheel/./Bio/Restriction copying build/lib.linux-x86_64-cpython-313/Bio/Restriction/Restriction.py -> build/bdist.linux-x86_64/wheel/./Bio/Restriction copying build/lib.linux-x86_64-cpython-313/Bio/Restriction/Restriction_Dictionary.py -> build/bdist.linux-x86_64/wheel/./Bio/Restriction copying build/lib.linux-x86_64-cpython-313/Bio/Restriction/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Restriction creating build/bdist.linux-x86_64/wheel/Bio/PopGen creating build/bdist.linux-x86_64/wheel/Bio/PopGen/GenePop copying build/lib.linux-x86_64-cpython-313/Bio/PopGen/GenePop/FileParser.py -> build/bdist.linux-x86_64/wheel/./Bio/PopGen/GenePop copying build/lib.linux-x86_64-cpython-313/Bio/PopGen/GenePop/LargeFileParser.py -> build/bdist.linux-x86_64/wheel/./Bio/PopGen/GenePop copying build/lib.linux-x86_64-cpython-313/Bio/PopGen/GenePop/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/PopGen/GenePop copying build/lib.linux-x86_64-cpython-313/Bio/PopGen/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/PopGen creating build/bdist.linux-x86_64/wheel/Bio/phenotype copying build/lib.linux-x86_64-cpython-313/Bio/phenotype/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/phenotype copying build/lib.linux-x86_64-cpython-313/Bio/phenotype/phen_micro.py -> build/bdist.linux-x86_64/wheel/./Bio/phenotype copying build/lib.linux-x86_64-cpython-313/Bio/phenotype/pm_fitting.py -> build/bdist.linux-x86_64/wheel/./Bio/phenotype creating build/bdist.linux-x86_64/wheel/Bio/Pathway creating build/bdist.linux-x86_64/wheel/Bio/Pathway/Rep copying build/lib.linux-x86_64-cpython-313/Bio/Pathway/Rep/Graph.py -> build/bdist.linux-x86_64/wheel/./Bio/Pathway/Rep copying build/lib.linux-x86_64-cpython-313/Bio/Pathway/Rep/MultiGraph.py -> build/bdist.linux-x86_64/wheel/./Bio/Pathway/Rep copying build/lib.linux-x86_64-cpython-313/Bio/Pathway/Rep/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Pathway/Rep copying build/lib.linux-x86_64-cpython-313/Bio/Pathway/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Pathway creating build/bdist.linux-x86_64/wheel/Bio/NMR copying build/lib.linux-x86_64-cpython-313/Bio/NMR/NOEtools.py -> build/bdist.linux-x86_64/wheel/./Bio/NMR copying build/lib.linux-x86_64-cpython-313/Bio/NMR/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/NMR copying build/lib.linux-x86_64-cpython-313/Bio/NMR/xpktools.py -> build/bdist.linux-x86_64/wheel/./Bio/NMR creating build/bdist.linux-x86_64/wheel/Bio/Nexus copying build/lib.linux-x86_64-cpython-313/Bio/Nexus/cnexus.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./Bio/Nexus copying build/lib.linux-x86_64-cpython-313/Bio/Nexus/cnexus.c -> build/bdist.linux-x86_64/wheel/./Bio/Nexus copying build/lib.linux-x86_64-cpython-313/Bio/Nexus/Nexus.py -> build/bdist.linux-x86_64/wheel/./Bio/Nexus copying build/lib.linux-x86_64-cpython-313/Bio/Nexus/Nodes.py -> build/bdist.linux-x86_64/wheel/./Bio/Nexus copying build/lib.linux-x86_64-cpython-313/Bio/Nexus/StandardData.py -> build/bdist.linux-x86_64/wheel/./Bio/Nexus copying build/lib.linux-x86_64-cpython-313/Bio/Nexus/Trees.py -> build/bdist.linux-x86_64/wheel/./Bio/Nexus copying build/lib.linux-x86_64-cpython-313/Bio/Nexus/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Nexus creating build/bdist.linux-x86_64/wheel/Bio/motifs copying build/lib.linux-x86_64-cpython-313/Bio/motifs/_pwm.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./Bio/motifs copying build/lib.linux-x86_64-cpython-313/Bio/motifs/_pwm.c -> build/bdist.linux-x86_64/wheel/./Bio/motifs creating build/bdist.linux-x86_64/wheel/Bio/motifs/jaspar copying build/lib.linux-x86_64-cpython-313/Bio/motifs/jaspar/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs/jaspar copying build/lib.linux-x86_64-cpython-313/Bio/motifs/jaspar/db.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs/jaspar copying build/lib.linux-x86_64-cpython-313/Bio/motifs/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs copying build/lib.linux-x86_64-cpython-313/Bio/motifs/alignace.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs copying build/lib.linux-x86_64-cpython-313/Bio/motifs/clusterbuster.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs copying build/lib.linux-x86_64-cpython-313/Bio/motifs/mast.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs copying build/lib.linux-x86_64-cpython-313/Bio/motifs/matrix.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs copying build/lib.linux-x86_64-cpython-313/Bio/motifs/meme.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs copying build/lib.linux-x86_64-cpython-313/Bio/motifs/minimal.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs copying build/lib.linux-x86_64-cpython-313/Bio/motifs/pfm.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs copying build/lib.linux-x86_64-cpython-313/Bio/motifs/thresholds.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs copying build/lib.linux-x86_64-cpython-313/Bio/motifs/transfac.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs copying build/lib.linux-x86_64-cpython-313/Bio/motifs/xms.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs creating build/bdist.linux-x86_64/wheel/Bio/Medline copying build/lib.linux-x86_64-cpython-313/Bio/Medline/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Medline creating build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/_bcif_helper.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/kdtrees.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/ccealign.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/kdtrees.c -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/ccealignmodule.c -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/bcifhelpermodule.c -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/AbstractPropertyMap.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/Atom.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/Chain.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/DSSP.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/Dice.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/Entity.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/FragmentMapper.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/HSExposure.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/MMCIF2Dict.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/MMCIFParser.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/Model.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/NACCESS.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/NeighborSearch.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/PDBExceptions.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/PDBIO.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/PDBList.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/PDBMLParser.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/PDBParser.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/PICIO.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/PSEA.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/Polypeptide.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/Residue.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/ResidueDepth.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/SASA.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/SCADIO.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/Selection.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/Structure.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/StructureAlignment.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/StructureBuilder.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/Superimposer.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/alphafold_db.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/binary_cif.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/cealign.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/ic_data.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/ic_rebuild.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/internal_coords.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/mmcifio.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/parse_pdb_header.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/qcprot.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-313/Bio/PDB/vectors.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB creating build/bdist.linux-x86_64/wheel/Bio/PDB/mmtf copying build/lib.linux-x86_64-cpython-313/Bio/PDB/mmtf/DefaultParser.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB/mmtf copying build/lib.linux-x86_64-cpython-313/Bio/PDB/mmtf/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB/mmtf copying build/lib.linux-x86_64-cpython-313/Bio/PDB/mmtf/mmtfio.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB/mmtf creating build/bdist.linux-x86_64/wheel/Bio/KEGG creating build/bdist.linux-x86_64/wheel/Bio/KEGG/KGML copying build/lib.linux-x86_64-cpython-313/Bio/KEGG/KGML/KGML_parser.py -> build/bdist.linux-x86_64/wheel/./Bio/KEGG/KGML copying build/lib.linux-x86_64-cpython-313/Bio/KEGG/KGML/KGML_pathway.py -> build/bdist.linux-x86_64/wheel/./Bio/KEGG/KGML copying build/lib.linux-x86_64-cpython-313/Bio/KEGG/KGML/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/KEGG/KGML creating build/bdist.linux-x86_64/wheel/Bio/KEGG/Map copying build/lib.linux-x86_64-cpython-313/Bio/KEGG/Map/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/KEGG/Map creating build/bdist.linux-x86_64/wheel/Bio/KEGG/Gene copying build/lib.linux-x86_64-cpython-313/Bio/KEGG/Gene/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/KEGG/Gene creating build/bdist.linux-x86_64/wheel/Bio/KEGG/Enzyme copying build/lib.linux-x86_64-cpython-313/Bio/KEGG/Enzyme/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/KEGG/Enzyme creating build/bdist.linux-x86_64/wheel/Bio/KEGG/Compound copying build/lib.linux-x86_64-cpython-313/Bio/KEGG/Compound/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/KEGG/Compound copying build/lib.linux-x86_64-cpython-313/Bio/KEGG/REST.py -> build/bdist.linux-x86_64/wheel/./Bio/KEGG copying build/lib.linux-x86_64-cpython-313/Bio/KEGG/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/KEGG creating build/bdist.linux-x86_64/wheel/Bio/HMM copying build/lib.linux-x86_64-cpython-313/Bio/HMM/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/HMM creating build/bdist.linux-x86_64/wheel/Bio/Graphics creating build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-313/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-313/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-313/Bio/Graphics/GenomeDiagram/_Colors.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-313/Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-313/Bio/Graphics/GenomeDiagram/_Diagram.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-313/Bio/Graphics/GenomeDiagram/_Feature.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-313/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-313/Bio/Graphics/GenomeDiagram/_Graph.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-313/Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-313/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-313/Bio/Graphics/GenomeDiagram/_Track.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-313/Bio/Graphics/GenomeDiagram/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-313/Bio/Graphics/BasicChromosome.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics copying build/lib.linux-x86_64-cpython-313/Bio/Graphics/ColorSpiral.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics copying build/lib.linux-x86_64-cpython-313/Bio/Graphics/Comparative.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics copying build/lib.linux-x86_64-cpython-313/Bio/Graphics/DisplayRepresentation.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics copying build/lib.linux-x86_64-cpython-313/Bio/Graphics/Distribution.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics copying build/lib.linux-x86_64-cpython-313/Bio/Graphics/KGML_vis.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics copying build/lib.linux-x86_64-cpython-313/Bio/Graphics/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics creating build/bdist.linux-x86_64/wheel/Bio/Geo copying build/lib.linux-x86_64-cpython-313/Bio/Geo/Record.py -> build/bdist.linux-x86_64/wheel/./Bio/Geo copying build/lib.linux-x86_64-cpython-313/Bio/Geo/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Geo creating build/bdist.linux-x86_64/wheel/Bio/GenBank copying build/lib.linux-x86_64-cpython-313/Bio/GenBank/Record.py -> build/bdist.linux-x86_64/wheel/./Bio/GenBank copying build/lib.linux-x86_64-cpython-313/Bio/GenBank/Scanner.py -> build/bdist.linux-x86_64/wheel/./Bio/GenBank copying build/lib.linux-x86_64-cpython-313/Bio/GenBank/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/GenBank copying build/lib.linux-x86_64-cpython-313/Bio/GenBank/utils.py -> build/bdist.linux-x86_64/wheel/./Bio/GenBank creating build/bdist.linux-x86_64/wheel/Bio/ExPASy copying build/lib.linux-x86_64-cpython-313/Bio/ExPASy/Enzyme.py -> build/bdist.linux-x86_64/wheel/./Bio/ExPASy copying build/lib.linux-x86_64-cpython-313/Bio/ExPASy/Prodoc.py -> build/bdist.linux-x86_64/wheel/./Bio/ExPASy copying build/lib.linux-x86_64-cpython-313/Bio/ExPASy/Prosite.py -> build/bdist.linux-x86_64/wheel/./Bio/ExPASy copying build/lib.linux-x86_64-cpython-313/Bio/ExPASy/ScanProsite.py -> build/bdist.linux-x86_64/wheel/./Bio/ExPASy copying build/lib.linux-x86_64-cpython-313/Bio/ExPASy/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/ExPASy copying build/lib.linux-x86_64-cpython-313/Bio/ExPASy/cellosaurus.py -> build/bdist.linux-x86_64/wheel/./Bio/ExPASy creating build/bdist.linux-x86_64/wheel/Bio/Entrez creating build/bdist.linux-x86_64/wheel/Bio/Entrez/XSDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/XSDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/XSDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/XSDs/IPGReportSet.xsd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/XSDs creating build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/xmlspecchars.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/xhtml-table-1.mod -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/taxon.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/section.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/references.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/pubmed_190101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/pubmed_180601.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/pubmed_180101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/pubmed_150101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/pubmed_140101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/pubmed_130501.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/pubmed_130101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/pubmed_120101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/pubmed_110101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/pubmed_100301.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/pubmed_100101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/pubmed_090101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/pubmed_080101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/pubmed_020114.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/pmc-1.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/phrase.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/para.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/notat.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/modules.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/mmlextra.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/mmlalias.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/mathmlsetup.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/mathml3.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/mathml3-qname1.mod -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/mathml2.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/math.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/list.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/link.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/journalmeta.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/isotech.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/isopub.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/isonum.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/isomscr.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/isomopf.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/isomfrk.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/isolat2.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/isolat1.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/isogrk4.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/isogrk3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/isogrk2.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/isogrk1.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/isodia.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/isocyr2.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/isocyr1.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/isobox.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/isoamsr.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/isoamso.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/isoamsn.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/isoamsc.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/isoamsb.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/isoamsa.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/htmltable.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/format.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/esummary_gene.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/esummary_clinvar.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/esummary-v1.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/esearch.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/epost.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/elink_020122.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/elink.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/einfo.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/egquery.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/eSummary_041029.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/eSpell.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/eSearch_020511.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/ePost_020511.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/eLink_101123.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/eLink_090910.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/eInfo_020511.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/display.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/default-mixes.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/default-classes.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/common.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/chars.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/bookdoc_150101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/bookdoc_140101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/bookdoc_130101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/bookdoc_120101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/bookdoc_110101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/bookdoc_100301.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/backmatter.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/articlemeta.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/archivecustom-modules.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/archivecustom-models.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/archivecustom-mixes.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/archivecustom-classes.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/archivearticle.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/XHTMLtablesetup.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/SP_General.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/SP_General.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/PRF_General.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/PRF_General.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/PIR_General.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/PIR_General.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/PDB_General.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/PDB_General.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/OMSSA.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/OMSSA.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NSE.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NSE.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_all.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Variation.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_TxInit.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Systems.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Submit.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Sequence.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Seqres.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Rsite.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Remap.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_RNA.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_PubMed.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Pub.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Protein.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Project.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Organism.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Mime.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Medlars.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_General.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Gene.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Cdd.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Blast4.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_BioSource.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/NCBI_Access.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/MMDB_Features.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/MMDB.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/MMDB.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-section1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-related-object1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-references1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-phrase1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-para1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-notat1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-modules1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-math1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-list1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-link1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-funding1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-format1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-display1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-common1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/HomoloGene.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/GenBank_General.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/EMBL_General.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/Parser.py -> build/bdist.linux-x86_64/wheel/./Bio/Entrez copying build/lib.linux-x86_64-cpython-313/Bio/Entrez/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Entrez creating build/bdist.linux-x86_64/wheel/Bio/Emboss copying build/lib.linux-x86_64-cpython-313/Bio/Emboss/Primer3.py -> build/bdist.linux-x86_64/wheel/./Bio/Emboss copying build/lib.linux-x86_64-cpython-313/Bio/Emboss/PrimerSearch.py -> build/bdist.linux-x86_64/wheel/./Bio/Emboss copying build/lib.linux-x86_64-cpython-313/Bio/Emboss/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Emboss creating build/bdist.linux-x86_64/wheel/Bio/Data copying build/lib.linux-x86_64-cpython-313/Bio/Data/CodonTable.py -> build/bdist.linux-x86_64/wheel/./Bio/Data copying build/lib.linux-x86_64-cpython-313/Bio/Data/IUPACData.py -> build/bdist.linux-x86_64/wheel/./Bio/Data copying build/lib.linux-x86_64-cpython-313/Bio/Data/PDBData.py -> build/bdist.linux-x86_64/wheel/./Bio/Data copying build/lib.linux-x86_64-cpython-313/Bio/Data/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Data creating build/bdist.linux-x86_64/wheel/Bio/Compass copying build/lib.linux-x86_64-cpython-313/Bio/Compass/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Compass creating build/bdist.linux-x86_64/wheel/Bio/codonalign copying build/lib.linux-x86_64-cpython-313/Bio/codonalign/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/codonalign copying build/lib.linux-x86_64-cpython-313/Bio/codonalign/codonalignment.py -> build/bdist.linux-x86_64/wheel/./Bio/codonalign copying build/lib.linux-x86_64-cpython-313/Bio/codonalign/codonseq.py -> build/bdist.linux-x86_64/wheel/./Bio/codonalign creating build/bdist.linux-x86_64/wheel/Bio/Cluster copying build/lib.linux-x86_64-cpython-313/Bio/Cluster/_cluster.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./Bio/Cluster copying build/lib.linux-x86_64-cpython-313/Bio/Cluster/clustermodule.c -> build/bdist.linux-x86_64/wheel/./Bio/Cluster copying build/lib.linux-x86_64-cpython-313/Bio/Cluster/cluster.h -> build/bdist.linux-x86_64/wheel/./Bio/Cluster copying build/lib.linux-x86_64-cpython-313/Bio/Cluster/cluster.c -> build/bdist.linux-x86_64/wheel/./Bio/Cluster copying build/lib.linux-x86_64-cpython-313/Bio/Cluster/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Cluster creating build/bdist.linux-x86_64/wheel/Bio/CAPS copying build/lib.linux-x86_64-cpython-313/Bio/CAPS/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/CAPS creating build/bdist.linux-x86_64/wheel/Bio/Blast copying build/lib.linux-x86_64-cpython-313/Bio/Blast/NCBIWWW.py -> build/bdist.linux-x86_64/wheel/./Bio/Blast copying build/lib.linux-x86_64-cpython-313/Bio/Blast/NCBIXML.py -> build/bdist.linux-x86_64/wheel/./Bio/Blast copying build/lib.linux-x86_64-cpython-313/Bio/Blast/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Blast copying build/lib.linux-x86_64-cpython-313/Bio/Blast/_parser.py -> build/bdist.linux-x86_64/wheel/./Bio/Blast copying build/lib.linux-x86_64-cpython-313/Bio/Blast/_writers.py -> build/bdist.linux-x86_64/wheel/./Bio/Blast creating build/bdist.linux-x86_64/wheel/Bio/Alphabet copying build/lib.linux-x86_64-cpython-313/Bio/Alphabet/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Alphabet creating build/bdist.linux-x86_64/wheel/Bio/AlignIO copying build/lib.linux-x86_64-cpython-313/Bio/AlignIO/ClustalIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO copying build/lib.linux-x86_64-cpython-313/Bio/AlignIO/EmbossIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO copying build/lib.linux-x86_64-cpython-313/Bio/AlignIO/FastaIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO copying build/lib.linux-x86_64-cpython-313/Bio/AlignIO/Interfaces.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO copying build/lib.linux-x86_64-cpython-313/Bio/AlignIO/MafIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO copying build/lib.linux-x86_64-cpython-313/Bio/AlignIO/MauveIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO copying build/lib.linux-x86_64-cpython-313/Bio/AlignIO/MsfIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO copying build/lib.linux-x86_64-cpython-313/Bio/AlignIO/NexusIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO copying build/lib.linux-x86_64-cpython-313/Bio/AlignIO/PhylipIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO copying build/lib.linux-x86_64-cpython-313/Bio/AlignIO/StockholmIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO copying build/lib.linux-x86_64-cpython-313/Bio/AlignIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO creating build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/_pairwisealigner.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/_codonaligner.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/_alignmentcounts.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/_aligncore.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/_pairwisealigner.h -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/_pairwisealigner.c -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/_codonaligner.c -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/_alignmentcounts.c -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/_aligncore.c -> build/bdist.linux-x86_64/wheel/./Bio/Align creating build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/_arraycore.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices creating build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/TRANS -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/STR -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/SCHNEIDER -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/RISLER -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/RAO -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/PAM70 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/PAM30 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/PAM250 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/NUC.4.4 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/MEGABLAST -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/MDM78 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/MCLACHLAN -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/LEVIN -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/JONES -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/JOHNSON -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/HOXD70 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/GONNET1992 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/GENETIC -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/FENG -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/DAYHOFF -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/BLOSUM90 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/BLOSUM80 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/BLOSUM62 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/BLOSUM50 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/BLOSUM45 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/BLASTP -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/BLASTN -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/BENNER74 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/BENNER6 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/data/BENNER22 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/_arraycore.h -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/_arraycore.c -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices copying build/lib.linux-x86_64-cpython-313/Bio/Align/substitution_matrices/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices copying build/lib.linux-x86_64-cpython-313/Bio/Align/AlignInfo.py -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/a2m.py -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/analysis.py -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/bed.py -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/bigbed.py -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/bigmaf.py -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/bigpsl.py -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/chain.py -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/clustal.py -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/emboss.py -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/exonerate.py -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/fasta.py -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/hhr.py -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/interfaces.py -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/maf.py -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/mauve.py -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/msf.py -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/nexus.py -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/phylip.py -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/psl.py -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/sam.py -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/stockholm.py -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-313/Bio/Align/tabular.py -> build/bdist.linux-x86_64/wheel/./Bio/Align creating build/bdist.linux-x86_64/wheel/Bio/Affy copying build/lib.linux-x86_64-cpython-313/Bio/Affy/CelFile.py -> build/bdist.linux-x86_64/wheel/./Bio/Affy copying build/lib.linux-x86_64-cpython-313/Bio/Affy/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Affy copying build/lib.linux-x86_64-cpython-313/Bio/File.py -> build/bdist.linux-x86_64/wheel/./Bio copying build/lib.linux-x86_64-cpython-313/Bio/Seq.py -> build/bdist.linux-x86_64/wheel/./Bio copying build/lib.linux-x86_64-cpython-313/Bio/SeqFeature.py -> build/bdist.linux-x86_64/wheel/./Bio copying build/lib.linux-x86_64-cpython-313/Bio/SeqRecord.py -> build/bdist.linux-x86_64/wheel/./Bio copying build/lib.linux-x86_64-cpython-313/Bio/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio copying build/lib.linux-x86_64-cpython-313/Bio/_utils.py -> build/bdist.linux-x86_64/wheel/./Bio copying build/lib.linux-x86_64-cpython-313/Bio/bgzf.py -> build/bdist.linux-x86_64/wheel/./Bio copying build/lib.linux-x86_64-cpython-313/Bio/pairwise2.py -> build/bdist.linux-x86_64/wheel/./Bio running install_egg_info Copying biopython.egg-info to build/bdist.linux-x86_64/wheel/./biopython-1.86-py3.13.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/biopython-1.86.dist-info/WHEEL creating '/builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir/pip-wheel-8dsbj4d2/.tmp-d7ewuwtj/biopython-1.86-cp313-cp313-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'Bio/File.py' adding 'Bio/Seq.py' adding 'Bio/SeqFeature.py' adding 'Bio/SeqRecord.py' adding 'Bio/__init__.py' adding 'Bio/_utils.py' adding 'Bio/bgzf.py' adding 'Bio/cpairwise2.cpython-313-x86_64-linux-gnu.so' adding 'Bio/cpairwise2module.c' adding 'Bio/pairwise2.py' adding 'Bio/py.typed' adding 'Bio/Affy/CelFile.py' adding 'Bio/Affy/__init__.py' adding 'Bio/Align/AlignInfo.py' adding 'Bio/Align/__init__.py' adding 'Bio/Align/_aligncore.c' adding 'Bio/Align/_aligncore.cpython-313-x86_64-linux-gnu.so' adding 'Bio/Align/_alignmentcounts.c' adding 'Bio/Align/_alignmentcounts.cpython-313-x86_64-linux-gnu.so' adding 'Bio/Align/_codonaligner.c' adding 'Bio/Align/_codonaligner.cpython-313-x86_64-linux-gnu.so' adding 'Bio/Align/_pairwisealigner.c' adding 'Bio/Align/_pairwisealigner.cpython-313-x86_64-linux-gnu.so' adding 'Bio/Align/_pairwisealigner.h' adding 'Bio/Align/a2m.py' adding 'Bio/Align/analysis.py' adding 'Bio/Align/bed.py' adding 'Bio/Align/bigbed.py' adding 'Bio/Align/bigmaf.py' adding 'Bio/Align/bigpsl.py' adding 'Bio/Align/chain.py' adding 'Bio/Align/clustal.py' adding 'Bio/Align/emboss.py' adding 'Bio/Align/exonerate.py' adding 'Bio/Align/fasta.py' adding 'Bio/Align/hhr.py' adding 'Bio/Align/interfaces.py' adding 'Bio/Align/maf.py' adding 'Bio/Align/mauve.py' adding 'Bio/Align/msf.py' adding 'Bio/Align/nexus.py' adding 'Bio/Align/phylip.py' adding 'Bio/Align/psl.py' adding 'Bio/Align/sam.py' adding 'Bio/Align/stockholm.py' adding 'Bio/Align/tabular.py' adding 'Bio/Align/substitution_matrices/__init__.py' adding 'Bio/Align/substitution_matrices/_arraycore.c' adding 'Bio/Align/substitution_matrices/_arraycore.cpython-313-x86_64-linux-gnu.so' adding 'Bio/Align/substitution_matrices/_arraycore.h' adding 'Bio/Align/substitution_matrices/data/BENNER22' adding 'Bio/Align/substitution_matrices/data/BENNER6' adding 'Bio/Align/substitution_matrices/data/BENNER74' adding 'Bio/Align/substitution_matrices/data/BLASTN' adding 'Bio/Align/substitution_matrices/data/BLASTP' adding 'Bio/Align/substitution_matrices/data/BLOSUM45' adding 'Bio/Align/substitution_matrices/data/BLOSUM50' adding 'Bio/Align/substitution_matrices/data/BLOSUM62' adding 'Bio/Align/substitution_matrices/data/BLOSUM80' adding 'Bio/Align/substitution_matrices/data/BLOSUM90' adding 'Bio/Align/substitution_matrices/data/DAYHOFF' adding 'Bio/Align/substitution_matrices/data/FENG' adding 'Bio/Align/substitution_matrices/data/GENETIC' adding 'Bio/Align/substitution_matrices/data/GONNET1992' adding 'Bio/Align/substitution_matrices/data/HOXD70' adding 'Bio/Align/substitution_matrices/data/JOHNSON' adding 'Bio/Align/substitution_matrices/data/JONES' adding 'Bio/Align/substitution_matrices/data/LEVIN' adding 'Bio/Align/substitution_matrices/data/MCLACHLAN' adding 'Bio/Align/substitution_matrices/data/MDM78' adding 'Bio/Align/substitution_matrices/data/MEGABLAST' adding 'Bio/Align/substitution_matrices/data/NUC.4.4' adding 'Bio/Align/substitution_matrices/data/PAM250' adding 'Bio/Align/substitution_matrices/data/PAM30' adding 'Bio/Align/substitution_matrices/data/PAM70' adding 'Bio/Align/substitution_matrices/data/RAO' adding 'Bio/Align/substitution_matrices/data/RISLER' adding 'Bio/Align/substitution_matrices/data/SCHNEIDER' adding 'Bio/Align/substitution_matrices/data/STR' adding 'Bio/Align/substitution_matrices/data/TRANS' adding 'Bio/AlignIO/ClustalIO.py' adding 'Bio/AlignIO/EmbossIO.py' adding 'Bio/AlignIO/FastaIO.py' adding 'Bio/AlignIO/Interfaces.py' adding 'Bio/AlignIO/MafIO.py' adding 'Bio/AlignIO/MauveIO.py' adding 'Bio/AlignIO/MsfIO.py' adding 'Bio/AlignIO/NexusIO.py' adding 'Bio/AlignIO/PhylipIO.py' adding 'Bio/AlignIO/StockholmIO.py' adding 'Bio/AlignIO/__init__.py' adding 'Bio/Alphabet/__init__.py' adding 'Bio/Blast/NCBIWWW.py' adding 'Bio/Blast/NCBIXML.py' adding 'Bio/Blast/__init__.py' adding 'Bio/Blast/_parser.py' adding 'Bio/Blast/_writers.py' adding 'Bio/CAPS/__init__.py' adding 'Bio/Cluster/__init__.py' adding 'Bio/Cluster/_cluster.cpython-313-x86_64-linux-gnu.so' adding 'Bio/Cluster/cluster.c' adding 'Bio/Cluster/cluster.h' adding 'Bio/Cluster/clustermodule.c' adding 'Bio/Compass/__init__.py' adding 'Bio/Data/CodonTable.py' adding 'Bio/Data/IUPACData.py' adding 'Bio/Data/PDBData.py' adding 'Bio/Data/__init__.py' adding 'Bio/Emboss/Primer3.py' adding 'Bio/Emboss/PrimerSearch.py' adding 'Bio/Emboss/__init__.py' adding 'Bio/Entrez/Parser.py' adding 'Bio/Entrez/__init__.py' adding 'Bio/Entrez/DTDs/BITS-embedded-index2.ent' adding 'Bio/Entrez/DTDs/BITS-question-answer2.ent' adding 'Bio/Entrez/DTDs/Docsum_3_0.dtd' adding 'Bio/Entrez/DTDs/Docsum_3_0.mod.dtd' adding 'Bio/Entrez/DTDs/Docsum_3_1.dtd' adding 'Bio/Entrez/DTDs/Docsum_3_1.mod.dtd' adding 'Bio/Entrez/DTDs/Docsum_3_2.dtd' adding 'Bio/Entrez/DTDs/Docsum_3_2.mod.dtd' adding 'Bio/Entrez/DTDs/Docsum_3_3.dtd' adding 'Bio/Entrez/DTDs/Docsum_3_3.mod.dtd' adding 'Bio/Entrez/DTDs/Docsum_3_4.dtd' adding 'Bio/Entrez/DTDs/Docsum_3_4.mod.dtd' adding 'Bio/Entrez/DTDs/EMBL_General.dtd' adding 'Bio/Entrez/DTDs/EMBL_General.mod.dtd' adding 'Bio/Entrez/DTDs/GenBank_General.dtd' adding 'Bio/Entrez/DTDs/GenBank_General.mod.dtd' adding 'Bio/Entrez/DTDs/HomoloGene.dtd' adding 'Bio/Entrez/DTDs/HomoloGene.mod.dtd' adding 'Bio/Entrez/DTDs/INSD_INSDSeq.dtd' adding 'Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd' adding 'Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent' adding 'Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent' adding 'Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd' adding 'Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent' adding 'Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent' adding 'Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent' adding 'Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent' adding 'Bio/Entrez/DTDs/JATS-articlemeta1-3.ent' adding 'Bio/Entrez/DTDs/JATS-backmatter1-3.ent' adding 'Bio/Entrez/DTDs/JATS-chars1-3.ent' adding 'Bio/Entrez/DTDs/JATS-common-atts1-3.ent' adding 'Bio/Entrez/DTDs/JATS-common1-3.ent' adding 'Bio/Entrez/DTDs/JATS-default-classes1-3.ent' adding 'Bio/Entrez/DTDs/JATS-default-mixes1-3.ent' adding 'Bio/Entrez/DTDs/JATS-display1-3.ent' adding 'Bio/Entrez/DTDs/JATS-format1-3.ent' adding 'Bio/Entrez/DTDs/JATS-funding1-3.ent' adding 'Bio/Entrez/DTDs/JATS-journalmeta1-3.ent' adding 'Bio/Entrez/DTDs/JATS-link1-3.ent' adding 'Bio/Entrez/DTDs/JATS-list1-3.ent' adding 'Bio/Entrez/DTDs/JATS-math1-3.ent' adding 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adding 'Bio/SeqIO/TwoBitIO.py' adding 'Bio/SeqIO/UniprotIO.py' adding 'Bio/SeqIO/XdnaIO.py' adding 'Bio/SeqIO/__init__.py' adding 'Bio/SeqIO/_index.py' adding 'Bio/SeqIO/_twoBitIO.c' adding 'Bio/SeqIO/_twoBitIO.cpython-313-x86_64-linux-gnu.so' adding 'Bio/SeqUtils/CheckSum.py' adding 'Bio/SeqUtils/IsoelectricPoint.py' adding 'Bio/SeqUtils/MeltingTemp.py' adding 'Bio/SeqUtils/ProtParam.py' adding 'Bio/SeqUtils/ProtParamData.py' adding 'Bio/SeqUtils/__init__.py' adding 'Bio/SeqUtils/lcc.py' adding 'Bio/Sequencing/Ace.py' adding 'Bio/Sequencing/Phd.py' adding 'Bio/Sequencing/__init__.py' adding 'Bio/SwissProt/KeyWList.py' adding 'Bio/SwissProt/__init__.py' adding 'Bio/TogoWS/__init__.py' adding 'Bio/UniGene/__init__.py' adding 'Bio/UniProt/GOA.py' adding 'Bio/UniProt/__init__.py' adding 'Bio/codonalign/__init__.py' adding 'Bio/codonalign/codonalignment.py' adding 'Bio/codonalign/codonseq.py' adding 'Bio/motifs/__init__.py' adding 'Bio/motifs/_pwm.c' adding 'Bio/motifs/_pwm.cpython-313-x86_64-linux-gnu.so' adding 'Bio/motifs/alignace.py' adding 'Bio/motifs/clusterbuster.py' adding 'Bio/motifs/mast.py' adding 'Bio/motifs/matrix.py' adding 'Bio/motifs/meme.py' adding 'Bio/motifs/minimal.py' adding 'Bio/motifs/pfm.py' adding 'Bio/motifs/thresholds.py' adding 'Bio/motifs/transfac.py' adding 'Bio/motifs/xms.py' adding 'Bio/motifs/jaspar/__init__.py' adding 'Bio/motifs/jaspar/db.py' adding 'Bio/phenotype/__init__.py' adding 'Bio/phenotype/phen_micro.py' adding 'Bio/phenotype/pm_fitting.py' adding 'BioSQL/BioSeq.py' adding 'BioSQL/BioSeqDatabase.py' adding 'BioSQL/DBUtils.py' adding 'BioSQL/Loader.py' adding 'BioSQL/__init__.py' adding 'BioSQL/py.typed' adding 'biopython-1.86.dist-info/LICENSE' adding 'biopython-1.86.dist-info/LICENSE.rst' adding 'biopython-1.86.dist-info/METADATA' adding 'biopython-1.86.dist-info/WHEEL' adding 'biopython-1.86.dist-info/top_level.txt' adding 'biopython-1.86.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Building wheel for biopython (pyproject.toml): finished with status 'done' Created wheel for biopython: filename=biopython-1.86-cp313-cp313-linux_x86_64.whl size=3179613 sha256=f85ab9ee69e02bf30b543280e052946688175c020fd44f2a0502c1b0d8b2fa62 Stored in directory: /builddir/.cache/pip/wheels/24/68/b4/d14956a0fed423557c67188122805ebf841bb93b6d08395f77 Successfully built biopython + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.2EdEPd + umask 022 + cd /builddir/build/BUILD/python-biopython-1.86-build + '[' /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT ++ dirname /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT + mkdir -p /builddir/build/BUILD/python-biopython-1.86-build + mkdir /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd biopython-1.86 ++ ls /builddir/build/BUILD/python-biopython-1.86-build/pyproject-wheeldir/biopython-1.86-cp313-cp313-linux_x86_64.whl ++ xargs basename --multiple ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' + specifier=biopython==1.86 + '[' -z biopython==1.86 ']' + TMPDIR=/builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/python-biopython-1.86-build/pyproject-wheeldir biopython==1.86 Using pip 24.3.1 from /usr/lib/python3.13/site-packages/pip (python 3.13) Looking in links: /builddir/build/BUILD/python-biopython-1.86-build/pyproject-wheeldir Processing /builddir/build/BUILD/python-biopython-1.86-build/pyproject-wheeldir/biopython-1.86-cp313-cp313-linux_x86_64.whl Installing collected packages: biopython Successfully installed biopython-1.86 + '[' -d /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/bin ']' + rm -f /builddir/build/BUILD/python-biopython-1.86-build/python-biopython-1.86-1.fc42.x86_64-pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib/python3.13/site-packages ']' + '[' /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib64/python3.13/site-packages '!=' /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib/python3.13/site-packages ']' + '[' -d /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib64/python3.13/site-packages ']' + site_dirs+=("/usr/lib64/python3.13/site-packages") + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT$site_dir/*.dist-info + echo '%ghost /usr/lib64/python3.13/site-packages/biopython-1.86.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib64/python3.13/site-packages/biopython-1.86.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT --record /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib64/python3.13/site-packages/biopython-1.86.dist-info/RECORD --output /builddir/build/BUILD/python-biopython-1.86-build/python-biopython-1.86-1.fc42.x86_64-pyproject-record + rm -fv /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib64/python3.13/site-packages/biopython-1.86.dist-info/RECORD removed '/builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib64/python3.13/site-packages/biopython-1.86.dist-info/RECORD' + rm -fv /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib64/python3.13/site-packages/biopython-1.86.dist-info/REQUESTED removed '/builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib64/python3.13/site-packages/biopython-1.86.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/python-biopython-1.86-build/python-biopython-1.86-1.fc42.x86_64-pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + RPM_FILES_ESCAPE=4.19 + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/python-biopython-1.86-build/python-biopython-1.86-1.fc42.x86_64-pyproject-files --output-modules /builddir/build/BUILD/python-biopython-1.86-build/python-biopython-1.86-1.fc42.x86_64-pyproject-modules --buildroot /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT --sitelib /usr/lib/python3.13/site-packages --sitearch /usr/lib64/python3.13/site-packages --python-version 3.13 --pyproject-record /builddir/build/BUILD/python-biopython-1.86-build/python-biopython-1.86-1.fc42.x86_64-pyproject-record --prefix /usr '*' +auto + /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 1.86-1.fc42 --unique-debug-suffix -1.86-1.fc42.x86_64 --unique-debug-src-base python-biopython-1.86-1.fc42.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/python-biopython-1.86-build/biopython-1.86 find-debuginfo: starting Extracting debug info from 13 files DWARF-compressing 13 files sepdebugcrcfix: Updated 13 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/python-biopython-1.86-1.fc42.x86_64 find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 Bytecompiling .py files below /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib/debug/usr/lib64/python3.13 using python3.13 Bytecompiling .py files below /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib64/python3.13 using python3.13 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j4 /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT 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/builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib64/python3.13/site-packages/Bio/Align/substitution_matrices/__pycache__/__init__.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib64/python3.13/site-packages/Bio/Affy/__pycache__/CelFile.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib64/python3.13/site-packages/Bio/Align/substitution_matrices/__pycache__/__init__.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib64/python3.13/site-packages/Bio/Affy/__pycache__/CelFile.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib64/python3.13/site-packages/Bio/Align/__pycache__/bigbed.cpython-313.pyc: replacing with normalized version Scanned 153 directories and 1284 files, processed 405 inodes, 405 modified (214 replaced + 191 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/python-biopython-1.86-build/SPECPARTS/rpm-debuginfo.specpart Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.qluloq + umask 022 + cd /builddir/build/BUILD/python-biopython-1.86-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd biopython-1.86 ++ cat /builddir/build/BUILD/python-biopython-1.86-build/python-biopython-1.86-1.fc42.x86_64-pyproject-modules + '[' -z 'Bio Bio.Affy Bio.Affy.CelFile Bio.Align Bio.Align.AlignInfo Bio.Align.a2m Bio.Align.analysis Bio.Align.bed Bio.Align.bigbed Bio.Align.bigmaf Bio.Align.bigpsl Bio.Align.chain Bio.Align.clustal Bio.Align.emboss Bio.Align.exonerate Bio.Align.fasta Bio.Align.hhr Bio.Align.interfaces Bio.Align.maf Bio.Align.mauve Bio.Align.msf Bio.Align.nexus Bio.Align.phylip Bio.Align.psl Bio.Align.sam Bio.Align.stockholm Bio.Align.substitution_matrices Bio.Align.tabular Bio.AlignIO Bio.AlignIO.ClustalIO Bio.AlignIO.EmbossIO Bio.AlignIO.FastaIO Bio.AlignIO.Interfaces Bio.AlignIO.MafIO Bio.AlignIO.MauveIO Bio.AlignIO.MsfIO Bio.AlignIO.NexusIO Bio.AlignIO.PhylipIO Bio.AlignIO.StockholmIO Bio.Alphabet Bio.Blast Bio.Blast.NCBIWWW Bio.Blast.NCBIXML Bio.CAPS Bio.Cluster Bio.Compass Bio.Data Bio.Data.CodonTable Bio.Data.IUPACData Bio.Data.PDBData Bio.Emboss Bio.Emboss.Primer3 Bio.Emboss.PrimerSearch Bio.Entrez Bio.Entrez.Parser Bio.ExPASy Bio.ExPASy.Enzyme Bio.ExPASy.Prodoc Bio.ExPASy.Prosite Bio.ExPASy.ScanProsite Bio.ExPASy.cellosaurus Bio.File Bio.GenBank Bio.GenBank.Record Bio.GenBank.Scanner Bio.GenBank.utils Bio.Geo Bio.Geo.Record Bio.Graphics Bio.Graphics.BasicChromosome Bio.Graphics.ColorSpiral Bio.Graphics.Comparative Bio.Graphics.DisplayRepresentation Bio.Graphics.Distribution Bio.Graphics.GenomeDiagram Bio.Graphics.KGML_vis Bio.HMM Bio.KEGG Bio.KEGG.Compound Bio.KEGG.Enzyme Bio.KEGG.Gene Bio.KEGG.KGML Bio.KEGG.KGML.KGML_parser Bio.KEGG.KGML.KGML_pathway Bio.KEGG.Map Bio.KEGG.REST Bio.Medline Bio.NMR Bio.NMR.NOEtools Bio.NMR.xpktools Bio.Nexus Bio.Nexus.Nexus Bio.Nexus.Nodes Bio.Nexus.StandardData Bio.Nexus.Trees Bio.Nexus.cnexus Bio.PDB Bio.PDB.AbstractPropertyMap Bio.PDB.Atom Bio.PDB.Chain Bio.PDB.DSSP Bio.PDB.Dice Bio.PDB.Entity Bio.PDB.FragmentMapper Bio.PDB.HSExposure Bio.PDB.MMCIF2Dict Bio.PDB.MMCIFParser Bio.PDB.Model Bio.PDB.NACCESS Bio.PDB.NeighborSearch Bio.PDB.PDBExceptions Bio.PDB.PDBIO Bio.PDB.PDBList Bio.PDB.PDBMLParser Bio.PDB.PDBParser Bio.PDB.PICIO Bio.PDB.PSEA Bio.PDB.Polypeptide Bio.PDB.Residue Bio.PDB.ResidueDepth Bio.PDB.SASA Bio.PDB.SCADIO Bio.PDB.Selection Bio.PDB.Structure Bio.PDB.StructureAlignment Bio.PDB.StructureBuilder Bio.PDB.Superimposer Bio.PDB.alphafold_db Bio.PDB.binary_cif Bio.PDB.ccealign Bio.PDB.cealign Bio.PDB.ic_data Bio.PDB.ic_rebuild Bio.PDB.internal_coords Bio.PDB.kdtrees Bio.PDB.mmcifio Bio.PDB.mmtf Bio.PDB.mmtf.DefaultParser Bio.PDB.mmtf.mmtfio Bio.PDB.parse_pdb_header Bio.PDB.qcprot Bio.PDB.vectors Bio.Pathway Bio.Pathway.Rep Bio.Pathway.Rep.Graph Bio.Pathway.Rep.MultiGraph Bio.Phylo Bio.Phylo.BaseTree Bio.Phylo.CDAO Bio.Phylo.CDAOIO Bio.Phylo.Consensus Bio.Phylo.NeXML Bio.Phylo.NeXMLIO Bio.Phylo.Newick Bio.Phylo.NewickIO Bio.Phylo.NexusIO Bio.Phylo.PAML Bio.Phylo.PAML.baseml Bio.Phylo.PAML.chi2 Bio.Phylo.PAML.codeml Bio.Phylo.PAML.yn00 Bio.Phylo.PhyloXML Bio.Phylo.PhyloXMLIO Bio.Phylo.TreeConstruction Bio.PopGen Bio.PopGen.GenePop Bio.PopGen.GenePop.FileParser Bio.PopGen.GenePop.LargeFileParser Bio.Restriction Bio.Restriction.PrintFormat Bio.Restriction.Restriction Bio.Restriction.Restriction_Dictionary Bio.SCOP Bio.SCOP.Cla Bio.SCOP.Des Bio.SCOP.Dom Bio.SCOP.Hie Bio.SCOP.Raf Bio.SCOP.Residues Bio.SVDSuperimposer Bio.SearchIO Bio.SearchIO.BlastIO Bio.SearchIO.BlastIO.blast_tab Bio.SearchIO.BlastIO.blast_xml Bio.SearchIO.BlatIO Bio.SearchIO.ExonerateIO Bio.SearchIO.ExonerateIO.exonerate_cigar Bio.SearchIO.ExonerateIO.exonerate_text Bio.SearchIO.ExonerateIO.exonerate_vulgar Bio.SearchIO.FastaIO Bio.SearchIO.HHsuiteIO Bio.SearchIO.HHsuiteIO.hhsuite2_text Bio.SearchIO.HmmerIO Bio.SearchIO.HmmerIO.hmmer2_text Bio.SearchIO.HmmerIO.hmmer3_domtab Bio.SearchIO.HmmerIO.hmmer3_tab Bio.SearchIO.HmmerIO.hmmer3_text Bio.SearchIO.InfernalIO Bio.SearchIO.InfernalIO.infernal_tab Bio.SearchIO.InfernalIO.infernal_text Bio.SearchIO.InterproscanIO Bio.SearchIO.InterproscanIO.interproscan_xml Bio.Seq Bio.SeqFeature Bio.SeqIO Bio.SeqIO.AbiIO Bio.SeqIO.AceIO Bio.SeqIO.FastaIO Bio.SeqIO.GckIO Bio.SeqIO.GfaIO Bio.SeqIO.IgIO Bio.SeqIO.InsdcIO Bio.SeqIO.Interfaces Bio.SeqIO.NibIO Bio.SeqIO.PdbIO Bio.SeqIO.PhdIO Bio.SeqIO.PirIO Bio.SeqIO.QualityIO Bio.SeqIO.SeqXmlIO Bio.SeqIO.SffIO Bio.SeqIO.SnapGeneIO Bio.SeqIO.SwissIO Bio.SeqIO.TabIO Bio.SeqIO.TwoBitIO Bio.SeqIO.UniprotIO Bio.SeqIO.XdnaIO Bio.SeqRecord Bio.SeqUtils Bio.SeqUtils.CheckSum Bio.SeqUtils.IsoelectricPoint Bio.SeqUtils.MeltingTemp Bio.SeqUtils.ProtParam Bio.SeqUtils.ProtParamData Bio.SeqUtils.lcc Bio.Sequencing Bio.Sequencing.Ace Bio.Sequencing.Phd Bio.SwissProt Bio.SwissProt.KeyWList Bio.TogoWS Bio.UniGene Bio.UniProt Bio.UniProt.GOA Bio.bgzf Bio.codonalign Bio.codonalign.codonalignment Bio.codonalign.codonseq Bio.cpairwise2 Bio.motifs Bio.motifs.alignace Bio.motifs.clusterbuster Bio.motifs.jaspar Bio.motifs.jaspar.db Bio.motifs.mast Bio.motifs.matrix Bio.motifs.meme Bio.motifs.minimal Bio.motifs.pfm Bio.motifs.thresholds Bio.motifs.transfac Bio.motifs.xms Bio.pairwise2 Bio.phenotype Bio.phenotype.phen_micro Bio.phenotype.pm_fitting BioSQL BioSQL.BioSeq BioSQL.BioSeqDatabase BioSQL.DBUtils BioSQL.Loader' ']' + '[' '!' -f /builddir/build/BUILD/python-biopython-1.86-build/python-biopython-1.86-1.fc42.x86_64-pyproject-modules ']' + PATH=/builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin + PYTHONPATH=/builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib64/python3.13/site-packages:/builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib/python3.13/site-packages + _PYTHONSITE=/builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib64/python3.13/site-packages:/builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib/python3.13/site-packages + PYTHONDONTWRITEBYTECODE=1 + /usr/bin/python3 -sP /usr/lib/rpm/redhat/import_all_modules.py -f /builddir/build/BUILD/python-biopython-1.86-build/python-biopython-1.86-1.fc42.x86_64-pyproject-modules -t Check import: Bio Check import: BioSQL + RPM_EC=0 ++ jobs -p + exit 0 Processing files: python3-biopython-1.86-1.fc42.x86_64 Provides: python-biopython = 1.86-1.fc42 python3-biopython = 1.86-1.fc42 python3-biopython(x86-64) = 1.86-1.fc42 python3.13-biopython = 1.86-1.fc42 python3.13dist(biopython) = 1.86 python3dist(biopython) = 1.86 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) python(abi) = 3.13 python3.13dist(numpy) rtld(GNU_HASH) Processing files: python-biopython-debugsource-1.86-1.fc42.x86_64 Provides: python-biopython-debugsource = 1.86-1.fc42 python-biopython-debugsource(x86-64) = 1.86-1.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: python3-biopython-debuginfo-1.86-1.fc42.x86_64 Provides: debuginfo(build-id) = 0381f3037f9154df23de92b992c4b8dd08b645ba debuginfo(build-id) = 27a82d79932b23534311d132766c8f3424e89d84 debuginfo(build-id) = 652915fe9df587808f7d9cec9a144e059c3d9e5b debuginfo(build-id) = 69c4e8188b07833ca841fdf533f75645e6f377dc debuginfo(build-id) = 82eb9e0f85c1aa4f04545ccd77e03d0143c56b2c debuginfo(build-id) = 8af0665e238df4be9d4a6b5b18ab85ee6093f149 debuginfo(build-id) = abc92442ff18856812865120a09d8e203948ac03 debuginfo(build-id) = b8af2ee977d7bb0bafb9464fbfdc427eca0e7ae4 debuginfo(build-id) = bb095fe13698873f3462ccf7777c7cdcd664436b debuginfo(build-id) = c780de374c0b66d6e0936eb7efcf4ffa04e7481b debuginfo(build-id) = c83c24ec68216b735db1fdd4f4e26689df66701b debuginfo(build-id) = f4187f3b09dcf2aff6ba3c9359ba63b13b4cc6f1 debuginfo(build-id) = faaa2c71d0b45e6458665071ee956cbdf93f3d15 python-biopython-debuginfo = 1.86-1.fc42 python3-biopython-debuginfo = 1.86-1.fc42 python3-biopython-debuginfo(x86-64) = 1.86-1.fc42 python3.13-biopython-debuginfo = 1.86-1.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: python-biopython-debugsource(x86-64) = 1.86-1.fc42 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT Wrote: /builddir/build/SRPMS/python-biopython-1.86-1.fc42.src.rpm Wrote: /builddir/build/RPMS/python-biopython-debugsource-1.86-1.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/python3-biopython-debuginfo-1.86-1.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/python3-biopython-1.86-1.fc42.x86_64.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.g2YiVL + umask 022 + cd /builddir/build/BUILD/python-biopython-1.86-build + test -d /builddir/build/BUILD/python-biopython-1.86-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/python-biopython-1.86-build + rm -rf /builddir/build/BUILD/python-biopython-1.86-build + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild python-biopython-1.86-1.fc42.src.rpm Finish: build phase for python-biopython-1.86-1.fc42.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-42-x86_64-1761692840.824553/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names INFO: Done(/var/lib/copr-rpmbuild/results/python-biopython-1.86-1.fc42.src.rpm) Config(child) 0 minutes 51 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "python-biopython-debugsource", "epoch": null, "version": "1.86", "release": "1.fc42", "arch": "x86_64" }, { "name": "python3-biopython", "epoch": null, "version": "1.86", "release": "1.fc42", "arch": "x86_64" }, { "name": "python-biopython", "epoch": null, "version": "1.86", "release": "1.fc42", "arch": "src" }, { "name": "python3-biopython-debuginfo", "epoch": null, "version": "1.86", "release": "1.fc42", "arch": "x86_64" } ] } RPMResults finished