Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c1cc' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/9741508-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64 Version: 1.6 PID: 2777 Logging PID: 2779 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'build_id': 9741508, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '707dfd02b65410a50a3f48e8aa906a8941f3e253', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/@copr/PyPI/python-biopython', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'python-biopython', 'package_version': '1.86-1', 'project_dirname': 'PyPI', 'project_name': 'PyPI', 'project_owner': '@copr', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/@copr/PyPI/fedora-rawhide-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': '@copr/PyPI--ksurma', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': None, 'submitter': 'ksurma', 'tags': [], 'task_id': '9741508-fedora-rawhide-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/@copr/PyPI/python-biopython /var/lib/copr-rpmbuild/workspace/workdir-h4vt4tss/python-biopython --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/@copr/PyPI/python-biopython', '/var/lib/copr-rpmbuild/workspace/workdir-h4vt4tss/python-biopython', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-h4vt4tss/python-biopython'... Running: git checkout 707dfd02b65410a50a3f48e8aa906a8941f3e253 -- cmd: ['git', 'checkout', '707dfd02b65410a50a3f48e8aa906a8941f3e253', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-h4vt4tss/python-biopython rc: 0 stdout: stderr: Note: switching to '707dfd02b65410a50a3f48e8aa906a8941f3e253'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 707dfd0 automatic import of python-biopython Running: dist-git-client sources cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-h4vt4tss/python-biopython rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading biopython-1.86.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o biopython-1.86.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/@copr/PyPI/python-biopython/biopython-1.86.tar.gz/md5/47ca510a7c46e6e42439112cf2cc24b3/biopython-1.86.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 18.9M 100 18.9M 0 0 24.4M 0 --:--:-- --:--:-- --:--:-- 24.4M INFO: Reading stdout from command: md5sum biopython-1.86.tar.gz tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-h4vt4tss/python-biopython/python-biopython.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-h4vt4tss/python-biopython --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1761692840.201320 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 6.5 starting (python version = 3.13.7, NVR = mock-6.5-1.fc42), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-h4vt4tss/python-biopython/python-biopython.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-h4vt4tss/python-biopython --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1761692840.201320 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-h4vt4tss/python-biopython/python-biopython.spec) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 6.5 INFO: Mock Version: 6.5 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1761692840.201320/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using container image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Tagging container image as mock-bootstrap-cee189b3-1741-4be7-adef-e8b4dc405807 INFO: Checking that 1bd871cc49d526a58c3328a04d2c0b8eee8b275d443b482730e82388439263e7 image matches host's architecture INFO: Copy content of container 1bd871cc49d526a58c3328a04d2c0b8eee8b275d443b482730e82388439263e7 to /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1761692840.201320/root INFO: mounting 1bd871cc49d526a58c3328a04d2c0b8eee8b275d443b482730e82388439263e7 with podman image mount INFO: image 1bd871cc49d526a58c3328a04d2c0b8eee8b275d443b482730e82388439263e7 as /var/lib/containers/storage/overlay/781e9baecde16741f0d316d11232103fac067eea3f906a1e4033c32a3efff9b8/merged INFO: umounting image 1bd871cc49d526a58c3328a04d2c0b8eee8b275d443b482730e82388439263e7 (/var/lib/containers/storage/overlay/781e9baecde16741f0d316d11232103fac067eea3f906a1e4033c32a3efff9b8/merged) with podman image umount INFO: Removing image mock-bootstrap-cee189b3-1741-4be7-adef-e8b4dc405807 INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1761692840.201320/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-6.0.0-1.fc44.x86_64 rpm-sequoia-1.9.0-2.fc43.x86_64 dnf5-5.2.17.0-2.fc44.x86_64 dnf5-plugins-5.2.17.0-2.fc44.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: Copr repository 100% | 31.7 MiB/s | 44.3 MiB | 00m01s fedora 100% | 2.7 MiB/s | 22.6 MiB | 00m08s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash x86_64 5.3.0-2.fc43 fedora 8.4 MiB bzip2 x86_64 1.0.8-21.fc43 fedora 95.3 KiB coreutils x86_64 9.8-3.fc44 fedora 5.4 MiB cpio x86_64 2.15-6.fc43 fedora 1.1 MiB diffutils x86_64 3.12-3.fc43 fedora 1.6 MiB fedora-release-common noarch 44-0.5 fedora 20.6 KiB findutils x86_64 1:4.10.0-6.fc43 fedora 1.8 MiB gawk x86_64 5.3.2-2.fc43 fedora 1.8 MiB glibc-minimal-langpack x86_64 2.42.9000-7.fc44 fedora 0.0 B grep x86_64 3.12-2.fc43 fedora 1.0 MiB gzip x86_64 1.14-1.fc44 fedora 397.8 KiB info x86_64 7.2-6.fc43 fedora 353.9 KiB patch x86_64 2.8-2.fc43 fedora 222.8 KiB redhat-rpm-config noarch 343-14.fc44 fedora 183.3 KiB rpm-build x86_64 6.0.0-1.fc44 fedora 287.4 KiB sed x86_64 4.9-6.fc44 fedora 857.3 KiB shadow-utils x86_64 2:4.18.0-3.fc43 fedora 3.9 MiB tar x86_64 2:1.35-6.fc43 fedora 2.9 MiB unzip x86_64 6.0-68.fc44 fedora 390.3 KiB util-linux x86_64 2.41.2-7.fc44 fedora 3.5 MiB which x86_64 2.23-3.fc43 fedora 83.5 KiB xz x86_64 1:5.8.1-2.fc43 fedora 1.3 MiB Installing dependencies: add-determinism x86_64 0.7.2-2.fc44 fedora 2.3 MiB alternatives x86_64 1.33-3.fc44 fedora 62.2 KiB ansible-srpm-macros noarch 1-18.1.fc43 fedora 35.7 KiB audit-libs x86_64 4.1.2-2.fc44 fedora 378.8 KiB binutils x86_64 2.45.50-5.fc44 fedora 27.1 MiB build-reproducibility-srpm-macros noarch 0.7.2-2.fc44 fedora 1.2 KiB bzip2-libs x86_64 1.0.8-21.fc43 fedora 80.6 KiB ca-certificates noarch 2025.2.80_v9.0.304-2.fc44 fedora 2.7 MiB coreutils-common x86_64 9.8-3.fc44 fedora 11.1 MiB crypto-policies noarch 20250714-5.gitcd6043a.fc44 fedora 146.9 KiB curl x86_64 8.17.0~rc2-1.fc44 fedora 474.2 KiB cyrus-sasl-lib x86_64 2.1.28-33.fc44 fedora 2.3 MiB debugedit x86_64 5.2-3.fc44 fedora 214.0 KiB dwz x86_64 0.16-2.fc43 fedora 287.1 KiB ed x86_64 1.22.2-1.fc44 fedora 148.1 KiB efi-srpm-macros noarch 6-5.fc44 fedora 40.2 KiB elfutils x86_64 0.193-3.fc43 fedora 2.9 MiB elfutils-debuginfod-client x86_64 0.193-3.fc43 fedora 83.9 KiB elfutils-default-yama-scope noarch 0.193-3.fc43 fedora 1.8 KiB elfutils-libelf x86_64 0.193-3.fc43 fedora 1.2 MiB elfutils-libs x86_64 0.193-3.fc43 fedora 683.4 KiB fedora-gpg-keys noarch 44-0.1 fedora 131.2 KiB fedora-release noarch 44-0.5 fedora 0.0 B fedora-release-identity-basic noarch 44-0.5 fedora 664.0 B fedora-repos noarch 44-0.1 fedora 4.9 KiB fedora-repos-rawhide noarch 44-0.1 fedora 2.2 KiB file x86_64 5.46-8.fc44 fedora 100.2 KiB file-libs x86_64 5.46-8.fc44 fedora 11.9 MiB filesystem x86_64 3.18-50.fc43 fedora 112.0 B filesystem-srpm-macros noarch 3.18-50.fc43 fedora 38.2 KiB fonts-srpm-macros noarch 1:5.0.0-1.fc44 fedora 55.8 KiB forge-srpm-macros noarch 0.4.0-3.fc43 fedora 38.9 KiB fpc-srpm-macros noarch 1.3-15.fc43 fedora 144.0 B gap-srpm-macros noarch 2-1.fc44 fedora 2.1 KiB gdb-minimal x86_64 16.3-6.fc44 fedora 13.3 MiB gdbm-libs x86_64 1:1.23-10.fc43 fedora 129.9 KiB ghc-srpm-macros noarch 1.9.2-3.fc43 fedora 779.0 B glibc x86_64 2.42.9000-7.fc44 fedora 6.7 MiB glibc-common x86_64 2.42.9000-7.fc44 fedora 1.0 MiB glibc-gconv-extra x86_64 2.42.9000-7.fc44 fedora 7.2 MiB gmp x86_64 1:6.3.0-4.fc44 fedora 815.3 KiB gnat-srpm-macros noarch 6-8.fc43 fedora 1.0 KiB gnulib-l10n noarch 20241231-1.fc44 fedora 655.0 KiB gnupg2 x86_64 2.4.8-4.fc43 fedora 6.5 MiB gnupg2-dirmngr x86_64 2.4.8-4.fc43 fedora 618.4 KiB gnupg2-gpg-agent x86_64 2.4.8-4.fc43 fedora 671.4 KiB gnupg2-gpgconf x86_64 2.4.8-4.fc43 fedora 250.0 KiB gnupg2-keyboxd x86_64 2.4.8-4.fc43 fedora 201.4 KiB gnupg2-verify x86_64 2.4.8-4.fc43 fedora 348.5 KiB gnutls x86_64 3.8.10-5.fc44 fedora 3.8 MiB go-srpm-macros noarch 3.8.0-1.fc44 fedora 61.9 KiB gpgverify noarch 2.2-3.fc43 fedora 8.7 KiB ima-evm-utils-libs x86_64 1.6.2-7.fc44 fedora 60.7 KiB jansson x86_64 2.14-3.fc43 fedora 89.1 KiB java-srpm-macros noarch 1-7.fc43 fedora 870.0 B json-c x86_64 0.18-7.fc43 fedora 82.7 KiB kernel-srpm-macros noarch 1.0-27.fc43 fedora 1.9 KiB keyutils-libs x86_64 1.6.3-6.fc43 fedora 54.3 KiB krb5-libs x86_64 1.21.3-10.fc44 fedora 2.3 MiB libacl x86_64 2.3.2-4.fc43 fedora 35.9 KiB libarchive x86_64 3.8.2-1.fc44 fedora 955.2 KiB libassuan x86_64 2.5.7-4.fc43 fedora 163.8 KiB libattr x86_64 2.5.2-6.fc43 fedora 24.4 KiB libblkid x86_64 2.41.2-7.fc44 fedora 262.4 KiB libbrotli x86_64 1.1.0-10.fc44 fedora 833.3 KiB libcap x86_64 2.76-4.fc44 fedora 209.1 KiB libcap-ng x86_64 0.8.5-8.fc44 fedora 68.9 KiB libcom_err x86_64 1.47.3-2.fc43 fedora 63.1 KiB libcurl x86_64 8.17.0~rc2-1.fc44 fedora 923.4 KiB libeconf x86_64 0.7.9-2.fc43 fedora 64.9 KiB libevent x86_64 2.1.12-16.fc43 fedora 883.1 KiB libfdisk x86_64 2.41.2-7.fc44 fedora 380.4 KiB libffi x86_64 3.5.2-1.fc44 fedora 83.8 KiB libfsverity x86_64 1.6-3.fc43 fedora 28.5 KiB libgcc x86_64 15.2.1-3.fc44 fedora 266.6 KiB libgcrypt x86_64 1.11.1-2.fc43 fedora 1.6 MiB libgomp x86_64 15.2.1-3.fc44 fedora 541.5 KiB libgpg-error x86_64 1.56-1.fc44 fedora 916.6 KiB libidn2 x86_64 2.3.8-2.fc43 fedora 552.5 KiB libksba x86_64 1.6.7-4.fc43 fedora 398.5 KiB liblastlog2 x86_64 2.41.2-7.fc44 fedora 33.9 KiB libmount x86_64 2.41.2-7.fc44 fedora 372.7 KiB libnghttp2 x86_64 1.67.1-1.fc44 fedora 162.2 KiB libpkgconf x86_64 2.3.0-3.fc43 fedora 78.1 KiB libpsl x86_64 0.21.5-6.fc43 fedora 76.4 KiB libselinux x86_64 3.9-5.fc44 fedora 193.1 KiB libselinux-utils x86_64 3.9-5.fc44 fedora 309.0 KiB libsemanage x86_64 3.9-4.fc44 fedora 308.5 KiB libsepol x86_64 3.9-2.fc43 fedora 822.0 KiB libsmartcols x86_64 2.41.2-7.fc44 fedora 180.5 KiB libssh x86_64 0.11.3-1.fc44 fedora 567.1 KiB libssh-config noarch 0.11.3-1.fc44 fedora 277.0 B libstdc++ x86_64 15.2.1-3.fc44 fedora 2.8 MiB libtasn1 x86_64 4.20.0-2.fc43 fedora 176.3 KiB libtool-ltdl x86_64 2.5.4-7.fc43 fedora 70.1 KiB libunistring x86_64 1.1-10.fc43 fedora 1.7 MiB libusb1 x86_64 1.0.29-4.fc44 fedora 171.3 KiB libuuid x86_64 2.41.2-7.fc44 fedora 37.3 KiB libverto x86_64 0.3.2-11.fc43 fedora 25.4 KiB libxcrypt x86_64 4.4.38-9.fc44 fedora 284.4 KiB libxml2 x86_64 2.12.10-5.fc44 fedora 1.7 MiB libzstd x86_64 1.5.7-3.fc44 fedora 940.3 KiB linkdupes x86_64 0.7.2-2.fc44 fedora 838.7 KiB lua-libs x86_64 5.4.8-2.fc43 fedora 280.8 KiB lua-srpm-macros noarch 1-16.fc43 fedora 1.3 KiB lz4-libs x86_64 1.10.0-3.fc43 fedora 161.4 KiB mpfr x86_64 4.2.2-2.fc43 fedora 832.8 KiB ncurses-base noarch 6.5-7.20250614.fc43 fedora 328.1 KiB ncurses-libs x86_64 6.5-7.20250614.fc43 fedora 946.3 KiB nettle x86_64 3.10.1-2.fc43 fedora 790.6 KiB npth x86_64 1.8-3.fc43 fedora 49.6 KiB ocaml-srpm-macros noarch 11-2.fc43 fedora 1.9 KiB openblas-srpm-macros noarch 2-20.fc43 fedora 112.0 B openldap x86_64 2.6.10-4.fc44 fedora 659.8 KiB openssl-libs x86_64 1:3.5.4-1.fc44 fedora 8.9 MiB p11-kit x86_64 0.25.8-1.fc44 fedora 2.3 MiB p11-kit-trust x86_64 0.25.8-1.fc44 fedora 446.5 KiB package-notes-srpm-macros noarch 0.5-14.fc43 fedora 1.6 KiB pam-libs x86_64 1.7.1-3.fc43 fedora 126.8 KiB pcre2 x86_64 10.46-1.fc44 fedora 697.7 KiB pcre2-syntax noarch 10.46-1.fc44 fedora 275.3 KiB perl-srpm-macros noarch 1-60.fc43 fedora 861.0 B pkgconf x86_64 2.3.0-3.fc43 fedora 88.5 KiB pkgconf-m4 noarch 2.3.0-3.fc43 fedora 14.4 KiB pkgconf-pkg-config x86_64 2.3.0-3.fc43 fedora 989.0 B policycoreutils x86_64 3.9-5.fc44 fedora 683.5 KiB popt x86_64 1.19-9.fc43 fedora 132.8 KiB publicsuffix-list-dafsa noarch 20250616-2.fc43 fedora 69.1 KiB pyproject-srpm-macros noarch 1.18.5-1.fc44 fedora 1.9 KiB python-srpm-macros noarch 3.14-9.fc44 fedora 51.6 KiB qt5-srpm-macros noarch 5.15.17-2.fc43 fedora 500.0 B qt6-srpm-macros noarch 6.10.0-1.fc44 fedora 464.0 B readline x86_64 8.3-2.fc43 fedora 511.7 KiB rpm x86_64 6.0.0-1.fc44 fedora 3.1 MiB rpm-build-libs x86_64 6.0.0-1.fc44 fedora 268.4 KiB rpm-libs x86_64 6.0.0-1.fc44 fedora 933.8 KiB rpm-plugin-selinux x86_64 6.0.0-1.fc44 fedora 12.0 KiB rpm-sequoia x86_64 1.9.0-2.fc43 fedora 2.5 MiB rpm-sign-libs x86_64 6.0.0-1.fc44 fedora 39.7 KiB rust-srpm-macros noarch 26.4-1.fc44 fedora 4.8 KiB selinux-policy noarch 42.14-1.fc44 fedora 31.9 KiB selinux-policy-targeted noarch 42.14-1.fc44 fedora 18.7 MiB setup noarch 2.15.0-26.fc43 fedora 725.0 KiB sqlite-libs x86_64 3.50.4-1.fc44 fedora 1.5 MiB systemd-libs x86_64 258.1-2.fc44 fedora 2.3 MiB systemd-standalone-sysusers x86_64 258.1-2.fc44 fedora 293.5 KiB tpm2-tss x86_64 4.1.3-8.fc43 fedora 1.6 MiB tree-sitter-srpm-macros noarch 0.4.2-1.fc43 fedora 8.3 KiB util-linux-core x86_64 2.41.2-7.fc44 fedora 1.5 MiB xxhash-libs x86_64 0.8.3-3.fc43 fedora 90.2 KiB xz-libs x86_64 1:5.8.1-2.fc43 fedora 217.8 KiB zig-srpm-macros noarch 1-5.fc43 fedora 1.1 KiB zip x86_64 3.0-44.fc43 fedora 694.5 KiB zlib-ng-compat x86_64 2.2.5-2.fc44 fedora 137.6 KiB zstd x86_64 1.5.7-3.fc44 fedora 506.2 KiB Installing groups: Buildsystem building group Transaction Summary: Installing: 177 packages Total size of inbound packages is 67 MiB. Need to download 67 MiB. After this operation, 219 MiB extra will be used (install 219 MiB, remove 0 B). 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864.3 KiB/s | 26.8 KiB | 00m00s [169/177] libssh-0:0.11.3-1.fc44.x86_64 100% | 4.0 MiB/s | 232.8 KiB | 00m00s [170/177] libverto-0:0.3.2-11.fc43.x86_ 100% | 666.9 KiB/s | 20.7 KiB | 00m00s [171/177] publicsuffix-list-dafsa-0:202 100% | 1.8 MiB/s | 59.2 KiB | 00m00s [172/177] libssh-config-0:0.11.3-1.fc44 100% | 293.9 KiB/s | 9.1 KiB | 00m00s [173/177] selinux-policy-0:42.14-1.fc44 100% | 1.8 MiB/s | 62.7 KiB | 00m00s [174/177] policycoreutils-0:3.9-5.fc44. 100% | 3.9 MiB/s | 214.6 KiB | 00m00s [175/177] libselinux-utils-0:3.9-5.fc44 100% | 3.6 MiB/s | 119.3 KiB | 00m00s [176/177] rpm-plugin-selinux-0:6.0.0-1. 100% | 609.1 KiB/s | 19.5 KiB | 00m00s [177/177] selinux-policy-targeted-0:42. 100% | 24.4 MiB/s | 6.8 MiB | 00m00s -------------------------------------------------------------------------------- [177/177] Total 100% | 18.6 MiB/s | 66.5 MiB | 00m04s Running transaction Importing OpenPGP key 0x6D9F90A6: UserID : "Fedora (44) " Fingerprint: 36F612DCF27F7D1A48A835E4DBFCF71C6D9F90A6 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-44-primary The key was successfully imported. Importing OpenPGP key 0x6D9F90A6: UserID : "Fedora (44) " Fingerprint: 36F612DCF27F7D1A48A835E4DBFCF71C6D9F90A6 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-44-primary The key was successfully imported. Importing OpenPGP key 0x31645531: UserID : "Fedora (43) " Fingerprint: C6E7F081CF80E13146676E88829B606631645531 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-43-primary The key was successfully imported. Importing OpenPGP key 0xF577861E: UserID : "Fedora (45) " Fingerprint: 4F50A6114CD5C6976A7F1179655A4B02F577861E From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-45-primary The key was successfully imported. [ 1/179] Verify package files 100% | 643.0 B/s | 177.0 B | 00m00s [ 2/179] Prepare transaction 100% | 1.6 KiB/s | 177.0 B | 00m00s [ 3/179] Installing libgcc-0:15.2.1-3. 100% | 131.0 MiB/s | 268.3 KiB | 00m00s [ 4/179] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 5/179] Installing publicsuffix-list- 100% | 68.2 MiB/s | 69.8 KiB | 00m00s [ 6/179] Installing fedora-release-ide 100% | 898.4 KiB/s | 920.0 B | 00m00s [ 7/179] Installing fedora-gpg-keys-0: 100% | 19.4 MiB/s | 179.0 KiB | 00m00s [ 8/179] Installing fedora-repos-rawhi 100% | 0.0 B/s | 2.4 KiB | 00m00s [ 9/179] Installing fedora-repos-0:44- 100% | 0.0 B/s | 5.7 KiB | 00m00s [ 10/179] Installing fedora-release-com 100% | 12.1 MiB/s | 24.9 KiB | 00m00s [ 11/179] Installing fedora-release-0:4 100% | 6.1 KiB/s | 124.0 B | 00m00s >>> Running sysusers scriptlet: setup-0:2.15.0-26.fc43.noarch >>> Finished sysusers scriptlet: setup-0:2.15.0-26.fc43.noarch >>> Scriptlet output: >>> Creating group 'adm' with GID 4. >>> Creating group 'audio' with GID 63. >>> Creating group 'cdrom' with GID 11. >>> Creating group 'clock' with GID 103. >>> Creating group 'dialout' with GID 18. >>> Creating group 'disk' with GID 6. >>> Creating group 'floppy' with GID 19. >>> Creating group 'ftp' with GID 50. >>> Creating group 'games' with GID 20. >>> Creating group 'input' with GID 104. >>> Creating group 'kmem' with GID 9. >>> Creating group 'kvm' with GID 36. >>> Creating group 'lock' with GID 54. >>> Creating group 'lp' with GID 7. >>> Creating group 'mail' with GID 12. >>> Creating group 'man' with GID 15. >>> Creating group 'mem' with GID 8. >>> Creating group 'nobody' with GID 65534. >>> Creating group 'render' with GID 105. >>> Creating group 'root' with GID 0. >>> Creating group 'sgx' with GID 106. >>> Creating group 'sys' with GID 3. >>> Creating group 'tape' with GID 33. >>> Creating group 'tty' with GID 5. >>> Creating group 'users' with GID 100. >>> Creating group 'utmp' with GID 22. >>> Creating group 'video' with GID 39. >>> Creating group 'wheel' with GID 10. >>> Creating user 'adm' (adm) with UID 3 and GID 4. >>> Creating group 'bin' with GID 1. >>> Creating user 'bin' (bin) with UID 1 and GID 1. >>> Creating group 'daemon' with GID 2. >>> Creating user 'daemon' (daemon) with UID 2 and GID 2. >>> Creating user 'ftp' (FTP User) with UID 14 and GID 50. >>> Creating user 'games' (games) with UID 12 and GID 100. >>> Creating user 'halt' (halt) with UID 7 and GID 0. >>> Creating user 'lp' (lp) with UID 4 and GID 7. >>> Creating user 'mail' (mail) with UID 8 and GID 12. >>> Creating user 'nobody' (Kernel Overflow User) with UID 65534 and GID 65534. >>> Creating user 'operator' (operator) with UID 11 and GID 0. >>> Creating user 'root' (Super User) with UID 0 and GID 0. >>> Creating user 'shutdown' (shutdown) with UID 6 and GID 0. >>> Creating user 'sync' (sync) with UID 5 and GID 0. >>> [ 12/179] Installing setup-0:2.15.0-26. 100% | 39.6 MiB/s | 730.6 KiB | 00m00s >>> [RPM] /etc/hosts created as /etc/hosts.rpmnew [ 13/179] Installing filesystem-0:3.18- 100% | 1.5 MiB/s | 212.8 KiB | 00m00s [ 14/179] Installing pkgconf-m4-0:2.3.0 100% | 14.5 MiB/s | 14.8 KiB | 00m00s [ 15/179] Installing pcre2-syntax-0:10. 100% | 135.6 MiB/s | 277.8 KiB | 00m00s [ 16/179] Installing gnulib-l10n-0:2024 100% | 107.7 MiB/s | 661.9 KiB | 00m00s [ 17/179] Installing coreutils-common-0 100% | 248.3 MiB/s | 11.2 MiB | 00m00s [ 18/179] Installing ncurses-base-0:6.5 100% | 38.4 MiB/s | 353.5 KiB | 00m00s [ 19/179] Installing bash-0:5.3.0-2.fc4 100% | 205.6 MiB/s | 8.4 MiB | 00m00s [ 20/179] Installing glibc-common-0:2.4 100% | 56.8 MiB/s | 1.0 MiB | 00m00s [ 21/179] Installing glibc-gconv-extra- 100% | 152.4 MiB/s | 7.3 MiB | 00m00s [ 22/179] Installing glibc-0:2.42.9000- 100% | 145.6 MiB/s | 6.7 MiB | 00m00s [ 23/179] Installing ncurses-libs-0:6.5 100% | 186.1 MiB/s | 952.8 KiB | 00m00s [ 24/179] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 25/179] Installing zlib-ng-compat-0:2 100% | 135.2 MiB/s | 138.4 KiB | 00m00s [ 26/179] Installing bzip2-libs-0:1.0.8 100% | 79.8 MiB/s | 81.7 KiB | 00m00s [ 27/179] Installing libgpg-error-0:1.5 100% | 53.0 MiB/s | 922.5 KiB | 00m00s [ 28/179] Installing libstdc++-0:15.2.1 100% | 258.5 MiB/s | 2.8 MiB | 00m00s [ 29/179] Installing libassuan-0:2.5.7- 100% | 161.7 MiB/s | 165.6 KiB | 00m00s [ 30/179] Installing libgcrypt-0:1.11.1 100% | 262.5 MiB/s | 1.6 MiB | 00m00s [ 31/179] Installing readline-0:8.3-2.f 100% | 250.9 MiB/s | 513.9 KiB | 00m00s [ 32/179] Installing gmp-1:6.3.0-4.fc44 100% | 199.6 MiB/s | 817.5 KiB | 00m00s [ 33/179] Installing xz-libs-1:5.8.1-2. 100% | 213.8 MiB/s | 218.9 KiB | 00m00s [ 34/179] Installing libuuid-0:2.41.2-7 100% | 37.6 MiB/s | 38.5 KiB | 00m00s [ 35/179] Installing popt-0:1.19-9.fc43 100% | 34.0 MiB/s | 139.4 KiB | 00m00s [ 36/179] Installing libzstd-0:1.5.7-3. 100% | 229.9 MiB/s | 941.6 KiB | 00m00s [ 37/179] Installing elfutils-libelf-0: 100% | 291.6 MiB/s | 1.2 MiB | 00m00s [ 38/179] Installing npth-0:1.8-3.fc43. 100% | 49.5 MiB/s | 50.7 KiB | 00m00s [ 39/179] Installing libblkid-0:2.41.2- 100% | 128.7 MiB/s | 263.5 KiB | 00m00s [ 40/179] Installing libxcrypt-0:4.4.38 100% | 140.2 MiB/s | 287.1 KiB | 00m00s [ 41/179] Installing libsepol-0:3.9-2.f 100% | 267.9 MiB/s | 822.9 KiB | 00m00s [ 42/179] Installing sqlite-libs-0:3.50 100% | 252.7 MiB/s | 1.5 MiB | 00m00s [ 43/179] Installing gnupg2-gpgconf-0:2 100% | 17.6 MiB/s | 252.0 KiB | 00m00s [ 44/179] Installing libattr-0:2.5.2-6. 100% | 24.8 MiB/s | 25.4 KiB | 00m00s [ 45/179] Installing libacl-0:2.3.2-4.f 100% | 35.9 MiB/s | 36.8 KiB | 00m00s [ 46/179] Installing pcre2-0:10.46-1.fc 100% | 227.6 MiB/s | 699.1 KiB | 00m00s [ 47/179] Installing libselinux-0:3.9-5 100% | 94.9 MiB/s | 194.4 KiB | 00m00s [ 48/179] Installing grep-0:3.12-2.fc43 100% | 52.8 MiB/s | 1.0 MiB | 00m00s [ 49/179] Installing sed-0:4.9-6.fc44.x 100% | 47.0 MiB/s | 865.5 KiB | 00m00s [ 50/179] Installing findutils-1:4.10.0 100% | 88.5 MiB/s | 1.9 MiB | 00m00s [ 51/179] Installing libtasn1-0:4.20.0- 100% | 173.9 MiB/s | 178.1 KiB | 00m00s [ 52/179] Installing libunistring-0:1.1 100% | 287.8 MiB/s | 1.7 MiB | 00m00s [ 53/179] Installing libidn2-0:2.3.8-2. 100% | 21.0 MiB/s | 558.7 KiB | 00m00s [ 54/179] Installing crypto-policies-0: 100% | 16.8 MiB/s | 172.0 KiB | 00m00s [ 55/179] Installing xz-1:5.8.1-2.fc43. 100% | 57.9 MiB/s | 1.3 MiB | 00m00s [ 56/179] Installing libmount-0:2.41.2- 100% | 182.5 MiB/s | 373.8 KiB | 00m00s [ 57/179] Installing gnupg2-verify-0:2. 100% | 26.3 MiB/s | 349.9 KiB | 00m00s [ 58/179] Installing dwz-0:0.16-2.fc43. 100% | 23.5 MiB/s | 288.5 KiB | 00m00s [ 59/179] Installing mpfr-0:4.2.2-2.fc4 100% | 203.7 MiB/s | 834.4 KiB | 00m00s [ 60/179] Installing gawk-0:5.3.2-2.fc4 100% | 86.5 MiB/s | 1.8 MiB | 00m00s [ 61/179] Installing libksba-0:1.6.7-4. 100% | 195.8 MiB/s | 401.1 KiB | 00m00s [ 62/179] Installing unzip-0:6.0-68.fc4 100% | 29.6 MiB/s | 393.8 KiB | 00m00s [ 63/179] Installing file-libs-0:5.46-8 100% | 474.3 MiB/s | 11.9 MiB | 00m00s [ 64/179] Installing file-0:5.46-8.fc44 100% | 7.6 MiB/s | 101.7 KiB | 00m00s [ 65/179] Installing diffutils-0:3.12-3 100% | 78.1 MiB/s | 1.6 MiB | 00m00s [ 66/179] Installing libeconf-0:0.7.9-2 100% | 65.0 MiB/s | 66.5 KiB | 00m00s [ 67/179] Installing libcap-ng-0:0.8.5- 100% | 69.2 MiB/s | 70.8 KiB | 00m00s [ 68/179] Installing audit-libs-0:4.1.2 100% | 186.3 MiB/s | 381.5 KiB | 00m00s [ 69/179] Installing pam-libs-0:1.7.1-3 100% | 63.0 MiB/s | 129.0 KiB | 00m00s [ 70/179] Installing libcap-0:2.76-4.fc 100% | 14.9 MiB/s | 214.3 KiB | 00m00s [ 71/179] Installing systemd-libs-0:258 100% | 257.9 MiB/s | 2.3 MiB | 00m00s [ 72/179] Installing libsemanage-0:3.9- 100% | 151.5 MiB/s | 310.2 KiB | 00m00s [ 73/179] Installing libsmartcols-0:2.4 100% | 177.3 MiB/s | 181.6 KiB | 00m00s [ 74/179] Installing lua-libs-0:5.4.8-2 100% | 137.6 MiB/s | 281.9 KiB | 00m00s [ 75/179] Installing json-c-0:0.18-7.fc 100% | 82.0 MiB/s | 84.0 KiB | 00m00s [ 76/179] Installing libffi-0:3.5.2-1.f 100% | 83.2 MiB/s | 85.2 KiB | 00m00s [ 77/179] Installing p11-kit-0:0.25.8-1 100% | 88.1 MiB/s | 2.3 MiB | 00m00s [ 78/179] Installing alternatives-0:1.3 100% | 5.2 MiB/s | 63.8 KiB | 00m00s [ 79/179] Installing p11-kit-trust-0:0. 100% | 12.5 MiB/s | 448.3 KiB | 00m00s [ 80/179] Installing openssl-libs-1:3.5 100% | 287.4 MiB/s | 8.9 MiB | 00m00s [ 81/179] Installing coreutils-0:9.8-3. 100% | 92.8 MiB/s | 5.5 MiB | 00m00s [ 82/179] Installing ca-certificates-0: 100% | 1.2 MiB/s | 2.5 MiB | 00m02s [ 83/179] Installing gzip-0:1.14-1.fc44 100% | 24.6 MiB/s | 403.3 KiB | 00m00s [ 84/179] Installing rpm-sequoia-0:1.9. 100% | 275.4 MiB/s | 2.5 MiB | 00m00s [ 85/179] Installing libfsverity-0:1.6- 100% | 28.8 MiB/s | 29.5 KiB | 00m00s [ 86/179] Installing libevent-0:2.1.12- 100% | 173.2 MiB/s | 886.8 KiB | 00m00s [ 87/179] Installing util-linux-core-0: 100% | 67.2 MiB/s | 1.5 MiB | 00m00s [ 88/179] Installing libusb1-0:1.0.29-4 100% | 7.7 MiB/s | 172.9 KiB | 00m00s >>> Running sysusers scriptlet: tpm2-tss-0:4.1.3-8.fc43.x86_64 >>> Finished sysusers scriptlet: tpm2-tss-0:4.1.3-8.fc43.x86_64 >>> Scriptlet output: >>> Creating group 'tss' with GID 59. >>> Creating user 'tss' (Account used for TPM access) with UID 59 and GID 59. >>> [ 89/179] Installing tpm2-tss-0:4.1.3-8 100% | 157.2 MiB/s | 1.6 MiB | 00m00s [ 90/179] Installing ima-evm-utils-libs 100% | 60.5 MiB/s | 62.0 KiB | 00m00s [ 91/179] Installing gnupg2-gpg-agent-0 100% | 18.8 MiB/s | 675.4 KiB | 00m00s [ 92/179] Installing systemd-standalone 100% | 20.5 MiB/s | 294.1 KiB | 00m00s [ 93/179] Installing rpm-libs-0:6.0.0-1 100% | 228.3 MiB/s | 935.3 KiB | 00m00s [ 94/179] Installing zip-0:3.0-44.fc43. 100% | 45.5 MiB/s | 698.4 KiB | 00m00s [ 95/179] Installing gnupg2-keyboxd-0:2 100% | 9.4 MiB/s | 202.7 KiB | 00m00s [ 96/179] Installing libpsl-0:0.21.5-6. 100% | 75.7 MiB/s | 77.5 KiB | 00m00s [ 97/179] Installing tar-2:1.35-6.fc43. 100% | 113.8 MiB/s | 3.0 MiB | 00m00s [ 98/179] Installing linkdupes-0:0.7.2- 100% | 54.7 MiB/s | 840.1 KiB | 00m00s [ 99/179] Installing libselinux-utils-0 100% | 18.6 MiB/s | 323.4 KiB | 00m00s [100/179] Installing liblastlog2-0:2.41 100% | 1.6 MiB/s | 35.9 KiB | 00m00s [101/179] Installing libfdisk-0:2.41.2- 100% | 93.2 MiB/s | 381.6 KiB | 00m00s [102/179] Installing util-linux-0:2.41. 100% | 53.3 MiB/s | 3.6 MiB | 00m00s [103/179] Installing policycoreutils-0: 100% | 13.9 MiB/s | 711.8 KiB | 00m00s [104/179] Installing selinux-policy-0:4 100% | 465.3 KiB/s | 33.5 KiB | 00m00s [105/179] Installing selinux-policy-tar 100% | 85.2 MiB/s | 14.9 MiB | 00m00s [106/179] Installing zstd-0:1.5.7-3.fc4 100% | 29.3 MiB/s | 509.8 KiB | 00m00s [107/179] Installing libxml2-0:2.12.10- 100% | 94.7 MiB/s | 1.7 MiB | 00m00s [108/179] Installing nettle-0:3.10.1-2. 100% | 193.8 MiB/s | 793.7 KiB | 00m00s [109/179] Installing gnutls-0:3.8.10-5. 100% | 256.2 MiB/s | 3.8 MiB | 00m00s [110/179] Installing bzip2-0:1.0.8-21.f 100% | 7.0 MiB/s | 99.8 KiB | 00m00s [111/179] Installing add-determinism-0: 100% | 121.3 MiB/s | 2.3 MiB | 00m00s [112/179] Installing build-reproducibil 100% | 0.0 B/s | 1.5 KiB | 00m00s [113/179] Installing cpio-0:2.15-6.fc43 100% | 61.1 MiB/s | 1.1 MiB | 00m00s [114/179] Installing ed-0:1.22.2-1.fc44 100% | 11.3 MiB/s | 150.4 KiB | 00m00s [115/179] Installing patch-0:2.8-2.fc43 100% | 18.3 MiB/s | 224.3 KiB | 00m00s [116/179] Installing lz4-libs-0:1.10.0- 100% | 158.6 MiB/s | 162.5 KiB | 00m00s [117/179] Installing libarchive-0:3.8.2 100% | 187.0 MiB/s | 957.2 KiB | 00m00s [118/179] Installing libgomp-0:15.2.1-3 100% | 176.7 MiB/s | 542.8 KiB | 00m00s [119/179] Installing libtool-ltdl-0:2.5 100% | 69.6 MiB/s | 71.2 KiB | 00m00s [120/179] Installing gdbm-libs-1:1.23-1 100% | 128.5 MiB/s | 131.6 KiB | 00m00s [121/179] Installing cyrus-sasl-lib-0:2 100% | 109.5 MiB/s | 2.3 MiB | 00m00s [122/179] Installing openldap-0:2.6.10- 100% | 162.0 MiB/s | 663.6 KiB | 00m00s [123/179] Installing gnupg2-dirmngr-0:2 100% | 16.8 MiB/s | 621.1 KiB | 00m00s [124/179] Installing gnupg2-0:2.4.8-4.f 100% | 172.4 MiB/s | 6.6 MiB | 00m00s [125/179] Installing rpm-sign-libs-0:6. 100% | 39.6 MiB/s | 40.6 KiB | 00m00s [126/179] Installing gpgverify-0:2.2-3. 100% | 9.2 MiB/s | 9.4 KiB | 00m00s [127/179] Installing jansson-0:2.14-3.f 100% | 88.3 MiB/s | 90.5 KiB | 00m00s [128/179] Installing libpkgconf-0:2.3.0 100% | 77.4 MiB/s | 79.2 KiB | 00m00s [129/179] Installing pkgconf-0:2.3.0-3. 100% | 6.8 MiB/s | 91.0 KiB | 00m00s [130/179] Installing pkgconf-pkg-config 100% | 161.2 KiB/s | 1.8 KiB | 00m00s [131/179] Installing xxhash-libs-0:0.8. 100% | 89.4 MiB/s | 91.6 KiB | 00m00s [132/179] Installing libbrotli-0:1.1.0- 100% | 204.0 MiB/s | 835.6 KiB | 00m00s [133/179] Installing libnghttp2-0:1.67. 100% | 159.5 MiB/s | 163.4 KiB | 00m00s [134/179] Installing keyutils-libs-0:1. 100% | 54.4 MiB/s | 55.7 KiB | 00m00s [135/179] Installing libcom_err-0:1.47. 100% | 62.7 MiB/s | 64.2 KiB | 00m00s [136/179] Installing libverto-0:0.3.2-1 100% | 26.6 MiB/s | 27.2 KiB | 00m00s [137/179] Installing krb5-libs-0:1.21.3 100% | 209.1 MiB/s | 2.3 MiB | 00m00s [138/179] Installing libssh-0:0.11.3-1. 100% | 185.3 MiB/s | 569.2 KiB | 00m00s [139/179] Installing libcurl-0:8.17.0~r 100% | 225.7 MiB/s | 924.5 KiB | 00m00s [140/179] Installing curl-0:8.17.0~rc2- 100% | 11.4 MiB/s | 476.9 KiB | 00m00s [141/179] Installing rpm-0:6.0.0-1.fc44 100% | 40.2 MiB/s | 2.6 MiB | 00m00s [142/179] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.2 KiB | 00m00s [143/179] Installing java-srpm-macros-0 100% | 1.1 MiB/s | 1.1 KiB | 00m00s [144/179] Installing lua-srpm-macros-0: 100% | 1.9 MiB/s | 1.9 KiB | 00m00s [145/179] Installing tree-sitter-srpm-m 100% | 9.1 MiB/s | 9.3 KiB | 00m00s [146/179] Installing zig-srpm-macros-0: 100% | 1.6 MiB/s | 1.7 KiB | 00m00s [147/179] Installing filesystem-srpm-ma 100% | 38.0 MiB/s | 38.9 KiB | 00m00s [148/179] Installing elfutils-default-y 100% | 97.3 KiB/s | 2.0 KiB | 00m00s [149/179] Installing elfutils-libs-0:0. 100% | 167.3 MiB/s | 685.2 KiB | 00m00s [150/179] Installing elfutils-debuginfo 100% | 5.6 MiB/s | 86.2 KiB | 00m00s [151/179] Installing elfutils-0:0.193-3 100% | 121.6 MiB/s | 2.9 MiB | 00m00s [152/179] Installing binutils-0:2.45.50 100% | 224.2 MiB/s | 27.1 MiB | 00m00s [153/179] Installing gdb-minimal-0:16.3 100% | 241.0 MiB/s | 13.3 MiB | 00m00s [154/179] Installing debugedit-0:5.2-3. 100% | 15.2 MiB/s | 217.3 KiB | 00m00s [155/179] Installing rpm-build-libs-0:6 100% | 131.5 MiB/s | 269.2 KiB | 00m00s [156/179] Installing rust-srpm-macros-0 100% | 5.4 MiB/s | 5.6 KiB | 00m00s [157/179] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 740.0 B | 00m00s [158/179] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [159/179] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [160/179] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s [161/179] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [162/179] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.1 KiB | 00m00s [163/179] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [164/179] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [165/179] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [166/179] Installing gap-srpm-macros-0: 100% | 0.0 B/s | 2.7 KiB | 00m00s [167/179] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [168/179] Installing ansible-srpm-macro 100% | 35.4 MiB/s | 36.2 KiB | 00m00s [169/179] Installing redhat-rpm-config- 100% | 61.7 MiB/s | 189.5 KiB | 00m00s [170/179] Installing forge-srpm-macros- 100% | 39.3 MiB/s | 40.3 KiB | 00m00s [171/179] Installing fonts-srpm-macros- 100% | 55.7 MiB/s | 57.0 KiB | 00m00s [172/179] Installing go-srpm-macros-0:3 100% | 61.6 MiB/s | 63.0 KiB | 00m00s [173/179] Installing rpm-build-0:6.0.0- 100% | 18.1 MiB/s | 296.5 KiB | 00m00s [174/179] Installing pyproject-srpm-mac 100% | 2.4 MiB/s | 2.5 KiB | 00m00s [175/179] Installing python-srpm-macros 100% | 5.7 MiB/s | 52.9 KiB | 00m00s [176/179] Installing rpm-plugin-selinux 100% | 12.7 MiB/s | 13.0 KiB | 00m00s [177/179] Installing which-0:2.23-3.fc4 100% | 5.6 MiB/s | 85.7 KiB | 00m00s [178/179] Installing shadow-utils-2:4.1 100% | 88.2 MiB/s | 4.0 MiB | 00m00s [179/179] Installing info-0:7.2-6.fc43. 100% | 37.8 KiB/s | 354.3 KiB | 00m09s Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.7.2-2.fc44.x86_64 alternatives-1.33-3.fc44.x86_64 ansible-srpm-macros-1-18.1.fc43.noarch audit-libs-4.1.2-2.fc44.x86_64 bash-5.3.0-2.fc43.x86_64 binutils-2.45.50-5.fc44.x86_64 build-reproducibility-srpm-macros-0.7.2-2.fc44.noarch bzip2-1.0.8-21.fc43.x86_64 bzip2-libs-1.0.8-21.fc43.x86_64 ca-certificates-2025.2.80_v9.0.304-2.fc44.noarch coreutils-9.8-3.fc44.x86_64 coreutils-common-9.8-3.fc44.x86_64 cpio-2.15-6.fc43.x86_64 crypto-policies-20250714-5.gitcd6043a.fc44.noarch curl-8.17.0~rc2-1.fc44.x86_64 cyrus-sasl-lib-2.1.28-33.fc44.x86_64 debugedit-5.2-3.fc44.x86_64 diffutils-3.12-3.fc43.x86_64 dwz-0.16-2.fc43.x86_64 ed-1.22.2-1.fc44.x86_64 efi-srpm-macros-6-5.fc44.noarch elfutils-0.193-3.fc43.x86_64 elfutils-debuginfod-client-0.193-3.fc43.x86_64 elfutils-default-yama-scope-0.193-3.fc43.noarch elfutils-libelf-0.193-3.fc43.x86_64 elfutils-libs-0.193-3.fc43.x86_64 fedora-gpg-keys-44-0.1.noarch fedora-release-44-0.5.noarch fedora-release-common-44-0.5.noarch fedora-release-identity-basic-44-0.5.noarch fedora-repos-44-0.1.noarch fedora-repos-rawhide-44-0.1.noarch file-5.46-8.fc44.x86_64 file-libs-5.46-8.fc44.x86_64 filesystem-3.18-50.fc43.x86_64 filesystem-srpm-macros-3.18-50.fc43.noarch findutils-4.10.0-6.fc43.x86_64 fonts-srpm-macros-5.0.0-1.fc44.noarch forge-srpm-macros-0.4.0-3.fc43.noarch fpc-srpm-macros-1.3-15.fc43.noarch gap-srpm-macros-2-1.fc44.noarch gawk-5.3.2-2.fc43.x86_64 gdb-minimal-16.3-6.fc44.x86_64 gdbm-libs-1.23-10.fc43.x86_64 ghc-srpm-macros-1.9.2-3.fc43.noarch glibc-2.42.9000-7.fc44.x86_64 glibc-common-2.42.9000-7.fc44.x86_64 glibc-gconv-extra-2.42.9000-7.fc44.x86_64 glibc-minimal-langpack-2.42.9000-7.fc44.x86_64 gmp-6.3.0-4.fc44.x86_64 gnat-srpm-macros-6-8.fc43.noarch gnulib-l10n-20241231-1.fc44.noarch gnupg2-2.4.8-4.fc43.x86_64 gnupg2-dirmngr-2.4.8-4.fc43.x86_64 gnupg2-gpg-agent-2.4.8-4.fc43.x86_64 gnupg2-gpgconf-2.4.8-4.fc43.x86_64 gnupg2-keyboxd-2.4.8-4.fc43.x86_64 gnupg2-verify-2.4.8-4.fc43.x86_64 gnutls-3.8.10-5.fc44.x86_64 go-srpm-macros-3.8.0-1.fc44.noarch gpg-pubkey-36f612dcf27f7d1a48a835e4dbfcf71c6d9f90a6-6786af3b gpg-pubkey-4f50a6114cd5c6976a7f1179655a4b02f577861e-6888bc98 gpg-pubkey-c6e7f081cf80e13146676e88829b606631645531-66b6dccf gpgverify-2.2-3.fc43.noarch grep-3.12-2.fc43.x86_64 gzip-1.14-1.fc44.x86_64 ima-evm-utils-libs-1.6.2-7.fc44.x86_64 info-7.2-6.fc43.x86_64 jansson-2.14-3.fc43.x86_64 java-srpm-macros-1-7.fc43.noarch json-c-0.18-7.fc43.x86_64 kernel-srpm-macros-1.0-27.fc43.noarch keyutils-libs-1.6.3-6.fc43.x86_64 krb5-libs-1.21.3-10.fc44.x86_64 libacl-2.3.2-4.fc43.x86_64 libarchive-3.8.2-1.fc44.x86_64 libassuan-2.5.7-4.fc43.x86_64 libattr-2.5.2-6.fc43.x86_64 libblkid-2.41.2-7.fc44.x86_64 libbrotli-1.1.0-10.fc44.x86_64 libcap-2.76-4.fc44.x86_64 libcap-ng-0.8.5-8.fc44.x86_64 libcom_err-1.47.3-2.fc43.x86_64 libcurl-8.17.0~rc2-1.fc44.x86_64 libeconf-0.7.9-2.fc43.x86_64 libevent-2.1.12-16.fc43.x86_64 libfdisk-2.41.2-7.fc44.x86_64 libffi-3.5.2-1.fc44.x86_64 libfsverity-1.6-3.fc43.x86_64 libgcc-15.2.1-3.fc44.x86_64 libgcrypt-1.11.1-2.fc43.x86_64 libgomp-15.2.1-3.fc44.x86_64 libgpg-error-1.56-1.fc44.x86_64 libidn2-2.3.8-2.fc43.x86_64 libksba-1.6.7-4.fc43.x86_64 liblastlog2-2.41.2-7.fc44.x86_64 libmount-2.41.2-7.fc44.x86_64 libnghttp2-1.67.1-1.fc44.x86_64 libpkgconf-2.3.0-3.fc43.x86_64 libpsl-0.21.5-6.fc43.x86_64 libselinux-3.9-5.fc44.x86_64 libselinux-utils-3.9-5.fc44.x86_64 libsemanage-3.9-4.fc44.x86_64 libsepol-3.9-2.fc43.x86_64 libsmartcols-2.41.2-7.fc44.x86_64 libssh-0.11.3-1.fc44.x86_64 libssh-config-0.11.3-1.fc44.noarch libstdc++-15.2.1-3.fc44.x86_64 libtasn1-4.20.0-2.fc43.x86_64 libtool-ltdl-2.5.4-7.fc43.x86_64 libunistring-1.1-10.fc43.x86_64 libusb1-1.0.29-4.fc44.x86_64 libuuid-2.41.2-7.fc44.x86_64 libverto-0.3.2-11.fc43.x86_64 libxcrypt-4.4.38-9.fc44.x86_64 libxml2-2.12.10-5.fc44.x86_64 libzstd-1.5.7-3.fc44.x86_64 linkdupes-0.7.2-2.fc44.x86_64 lua-libs-5.4.8-2.fc43.x86_64 lua-srpm-macros-1-16.fc43.noarch lz4-libs-1.10.0-3.fc43.x86_64 mpfr-4.2.2-2.fc43.x86_64 ncurses-base-6.5-7.20250614.fc43.noarch ncurses-libs-6.5-7.20250614.fc43.x86_64 nettle-3.10.1-2.fc43.x86_64 npth-1.8-3.fc43.x86_64 ocaml-srpm-macros-11-2.fc43.noarch openblas-srpm-macros-2-20.fc43.noarch openldap-2.6.10-4.fc44.x86_64 openssl-libs-3.5.4-1.fc44.x86_64 p11-kit-0.25.8-1.fc44.x86_64 p11-kit-trust-0.25.8-1.fc44.x86_64 package-notes-srpm-macros-0.5-14.fc43.noarch pam-libs-1.7.1-3.fc43.x86_64 patch-2.8-2.fc43.x86_64 pcre2-10.46-1.fc44.x86_64 pcre2-syntax-10.46-1.fc44.noarch perl-srpm-macros-1-60.fc43.noarch pkgconf-2.3.0-3.fc43.x86_64 pkgconf-m4-2.3.0-3.fc43.noarch pkgconf-pkg-config-2.3.0-3.fc43.x86_64 policycoreutils-3.9-5.fc44.x86_64 popt-1.19-9.fc43.x86_64 publicsuffix-list-dafsa-20250616-2.fc43.noarch pyproject-srpm-macros-1.18.5-1.fc44.noarch python-srpm-macros-3.14-9.fc44.noarch qt5-srpm-macros-5.15.17-2.fc43.noarch qt6-srpm-macros-6.10.0-1.fc44.noarch readline-8.3-2.fc43.x86_64 redhat-rpm-config-343-14.fc44.noarch rpm-6.0.0-1.fc44.x86_64 rpm-build-6.0.0-1.fc44.x86_64 rpm-build-libs-6.0.0-1.fc44.x86_64 rpm-libs-6.0.0-1.fc44.x86_64 rpm-plugin-selinux-6.0.0-1.fc44.x86_64 rpm-sequoia-1.9.0-2.fc43.x86_64 rpm-sign-libs-6.0.0-1.fc44.x86_64 rust-srpm-macros-26.4-1.fc44.noarch sed-4.9-6.fc44.x86_64 selinux-policy-42.14-1.fc44.noarch selinux-policy-targeted-42.14-1.fc44.noarch setup-2.15.0-26.fc43.noarch shadow-utils-4.18.0-3.fc43.x86_64 sqlite-libs-3.50.4-1.fc44.x86_64 systemd-libs-258.1-2.fc44.x86_64 systemd-standalone-sysusers-258.1-2.fc44.x86_64 tar-1.35-6.fc43.x86_64 tpm2-tss-4.1.3-8.fc43.x86_64 tree-sitter-srpm-macros-0.4.2-1.fc43.noarch unzip-6.0-68.fc44.x86_64 util-linux-2.41.2-7.fc44.x86_64 util-linux-core-2.41.2-7.fc44.x86_64 which-2.23-3.fc43.x86_64 xxhash-libs-0.8.3-3.fc43.x86_64 xz-5.8.1-2.fc43.x86_64 xz-libs-5.8.1-2.fc43.x86_64 zig-srpm-macros-1-5.fc43.noarch zip-3.0-44.fc43.x86_64 zlib-ng-compat-2.2.5-2.fc44.x86_64 zstd-1.5.7-3.fc44.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1761609600 Wrote: /builddir/build/SRPMS/python-biopython-1.86-1.fc44.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1761692840.201320/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-h4vt4tss/python-biopython/python-biopython.spec) Config(child) 0 minutes 48 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/python-biopython-1.86-1.fc44.src.rpm) Config(fedora-rawhide-x86_64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1761692840.201320/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1761692840.201320/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1761692840.201320/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-6.0.0-1.fc44.x86_64 rpm-sequoia-1.9.0-2.fc43.x86_64 dnf5-5.2.17.0-2.fc44.x86_64 dnf5-plugins-5.2.17.0-2.fc44.x86_64 Finish: chroot init Start: build phase for python-biopython-1.86-1.fc44.src.rpm Start: build setup for python-biopython-1.86-1.fc44.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1761609600 Wrote: /builddir/build/SRPMS/python-biopython-1.86-1.fc44.src.rpm Updating and loading repositories: Copr repository 100% | 49.7 KiB/s | 1.5 KiB | 00m00s fedora 100% | 108.5 KiB/s | 7.9 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: gcc x86_64 15.2.1-3.fc44 fedora 111.9 MiB python3-devel x86_64 3.14.0-2.fc44 fedora 1.9 MiB Installing dependencies: annobin-docs noarch 12.99-1.fc43 fedora 98.9 KiB annobin-plugin-gcc x86_64 12.99-1.fc43 fedora 1.0 MiB cpp x86_64 15.2.1-3.fc44 fedora 37.9 MiB expat x86_64 2.7.2-1.fc44 fedora 298.6 KiB gcc-plugin-annobin x86_64 15.2.1-3.fc44 fedora 57.1 KiB glibc-devel x86_64 2.42.9000-7.fc44 fedora 2.3 MiB kernel-headers x86_64 6.18.0-0.rc3.30.fc44 fedora 6.8 MiB libmpc x86_64 1.3.1-8.fc43 fedora 160.6 KiB libxcrypt-devel x86_64 4.4.38-9.fc44 fedora 30.8 KiB make x86_64 1:4.4.1-11.fc43 fedora 1.8 MiB mpdecimal x86_64 4.0.1-2.fc43 fedora 217.2 KiB pyproject-rpm-macros noarch 1.18.5-1.fc44 fedora 115.0 KiB python-pip-wheel noarch 25.2-4.fc44 fedora 1.2 MiB python-rpm-macros noarch 3.14-9.fc44 fedora 27.6 KiB python3 x86_64 3.14.0-2.fc44 fedora 28.9 KiB python3-libs x86_64 3.14.0-2.fc44 fedora 43.0 MiB python3-packaging noarch 25.0-7.fc44 fedora 607.4 KiB python3-rpm-generators noarch 14-13.fc43 fedora 81.7 KiB python3-rpm-macros noarch 3.14-9.fc44 fedora 6.5 KiB tzdata noarch 2025b-3.fc43 fedora 1.6 MiB Transaction Summary: Installing: 22 packages Total size of inbound packages is 69 MiB. Need to download 69 MiB. After this operation, 211 MiB extra will be used (install 211 MiB, remove 0 B). [ 1/22] python3-devel-0:3.14.0-2.fc44.x 100% | 2.1 MiB/s | 434.9 KiB | 00m00s [ 2/22] libmpc-0:1.3.1-8.fc43.x86_64 100% | 2.2 MiB/s | 70.4 KiB | 00m00s [ 3/22] make-1:4.4.1-11.fc43.x86_64 100% | 7.3 MiB/s | 585.2 KiB | 00m00s [ 4/22] python3-libs-0:3.14.0-2.fc44.x8 100% | 22.2 MiB/s | 9.8 MiB | 00m00s [ 5/22] expat-0:2.7.2-1.fc44.x86_64 100% | 3.6 MiB/s | 119.0 KiB | 00m00s [ 6/22] mpdecimal-0:4.0.1-2.fc43.x86_64 100% | 3.0 MiB/s | 97.1 KiB | 00m00s [ 7/22] python-pip-wheel-0:25.2-4.fc44. 100% | 21.8 MiB/s | 1.1 MiB | 00m00s [ 8/22] tzdata-0:2025b-3.fc43.noarch 100% | 18.3 MiB/s | 713.9 KiB | 00m00s [ 9/22] python3-0:3.14.0-2.fc44.x86_64 100% | 893.2 KiB/s | 27.7 KiB | 00m00s [10/22] glibc-devel-0:2.42.9000-7.fc44. 100% | 15.7 MiB/s | 579.8 KiB | 00m00s [11/22] libxcrypt-devel-0:4.4.38-9.fc44 100% | 943.2 KiB/s | 29.2 KiB | 00m00s [12/22] kernel-headers-0:6.18.0-0.rc3.3 100% | 23.8 MiB/s | 1.7 MiB | 00m00s [13/22] annobin-plugin-gcc-0:12.99-1.fc 100% | 18.0 MiB/s | 996.0 KiB | 00m00s [14/22] gcc-plugin-annobin-0:15.2.1-3.f 100% | 1.8 MiB/s | 57.7 KiB | 00m00s [15/22] annobin-docs-0:12.99-1.fc43.noa 100% | 2.8 MiB/s | 89.5 KiB | 00m00s [16/22] pyproject-rpm-macros-0:1.18.5-1 100% | 1.4 MiB/s | 44.4 KiB | 00m00s [17/22] python-rpm-macros-0:3.14-9.fc44 100% | 632.8 KiB/s | 19.6 KiB | 00m00s [18/22] python3-rpm-generators-0:14-13. 100% | 920.5 KiB/s | 28.5 KiB | 00m00s [19/22] python3-rpm-macros-0:3.14-9.fc4 100% | 380.2 KiB/s | 12.2 KiB | 00m00s [20/22] python3-packaging-0:25.0-7.fc44 100% | 4.9 MiB/s | 161.4 KiB | 00m00s [21/22] cpp-0:15.2.1-3.fc44.x86_64 100% | 6.0 MiB/s | 12.9 MiB | 00m02s [22/22] gcc-0:15.2.1-3.fc44.x86_64 100% | 10.5 MiB/s | 39.7 MiB | 00m04s -------------------------------------------------------------------------------- [22/22] Total 100% | 18.3 MiB/s | 69.3 MiB | 00m04s Running transaction [ 1/24] Verify package files 100% | 83.0 B/s | 22.0 B | 00m00s [ 2/24] Prepare transaction 100% | 328.0 B/s | 22.0 B | 00m00s [ 3/24] Installing python-rpm-macros-0: 100% | 27.8 MiB/s | 28.5 KiB | 00m00s [ 4/24] Installing python3-rpm-macros-0 100% | 0.0 B/s | 6.8 KiB | 00m00s [ 5/24] Installing libmpc-0:1.3.1-8.fc4 100% | 79.1 MiB/s | 162.1 KiB | 00m00s [ 6/24] Installing cpp-0:15.2.1-3.fc44. 100% | 271.1 MiB/s | 37.9 MiB | 00m00s [ 7/24] Installing pyproject-rpm-macros 100% | 57.1 MiB/s | 117.0 KiB | 00m00s [ 8/24] Installing annobin-docs-0:12.99 100% | 32.6 MiB/s | 100.1 KiB | 00m00s [ 9/24] Installing kernel-headers-0:6.1 100% | 111.9 MiB/s | 6.9 MiB | 00m00s [10/24] Installing glibc-devel-0:2.42.9 100% | 73.7 MiB/s | 2.4 MiB | 00m00s [11/24] Installing libxcrypt-devel-0:4. 100% | 4.0 MiB/s | 33.1 KiB | 00m00s [12/24] Installing tzdata-0:2025b-3.fc4 100% | 24.9 MiB/s | 1.9 MiB | 00m00s [13/24] Installing python-pip-wheel-0:2 100% | 393.3 MiB/s | 1.2 MiB | 00m00s [14/24] Installing mpdecimal-0:4.0.1-2. 100% | 106.8 MiB/s | 218.8 KiB | 00m00s [15/24] Installing expat-0:2.7.2-1.fc44 100% | 14.0 MiB/s | 300.7 KiB | 00m00s [16/24] Installing python3-libs-0:3.14. 100% | 198.8 MiB/s | 43.3 MiB | 00m00s [17/24] Installing python3-0:3.14.0-2.f 100% | 2.0 MiB/s | 30.6 KiB | 00m00s [18/24] Installing python3-packaging-0: 100% | 121.1 MiB/s | 619.9 KiB | 00m00s [19/24] Installing python3-rpm-generato 100% | 81.0 MiB/s | 82.9 KiB | 00m00s [20/24] Installing make-1:4.4.1-11.fc43 100% | 78.3 MiB/s | 1.8 MiB | 00m00s [21/24] Installing gcc-0:15.2.1-3.fc44. 100% | 299.2 MiB/s | 111.9 MiB | 00m00s [22/24] Installing annobin-plugin-gcc-0 100% | 31.8 MiB/s | 1.0 MiB | 00m00s [23/24] Installing gcc-plugin-annobin-0 100% | 1.8 MiB/s | 58.6 KiB | 00m00s [24/24] Installing python3-devel-0:3.14 100% | 10.8 MiB/s | 2.0 MiB | 00m00s Complete! Finish: build setup for python-biopython-1.86-1.fc44.src.rpm Start: rpmbuild python-biopython-1.86-1.fc44.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1761609600 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.6Bb7Ev Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.OhBNud + umask 022 + cd /builddir/build/BUILD/python-biopython-1.86-build + cd /builddir/build/BUILD/python-biopython-1.86-build + rm -rf biopython-1.86 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/biopython-1.86.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd biopython-1.86 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.jSB6o7 + umask 022 + cd /builddir/build/BUILD/python-biopython-1.86-build + cd biopython-1.86 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir + RPM_TOXENV=py314 + FEDORA=44 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-biopython-1.86-build/pyproject-wheeldir --output /builddir/build/BUILD/python-biopython-1.86-build/python-biopython-1.86-1.fc44.x86_64-pyproject-buildrequires Handling setuptools >= 40.8 from default build backend Requirement not satisfied: setuptools >= 40.8 Exiting dependency generation pass: build backend + cat /builddir/build/BUILD/python-biopython-1.86-build/python-biopython-1.86-1.fc44.x86_64-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-biopython-1.86-1.fc44.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: Copr repository 100% | 51.3 KiB/s | 1.5 KiB | 00m00s fedora 100% | 131.9 KiB/s | 7.9 KiB | 00m00s Repositories loaded. Package "gcc-15.2.1-3.fc44.x86_64" is already installed. Package Arch Version Repository Size Installing: python3-pip noarch 25.2-4.fc44 fedora 11.3 MiB python3-setuptools noarch 78.1.1-15.fc44 fedora 9.0 MiB Transaction Summary: Installing: 2 packages Package "pyproject-rpm-macros-1.18.5-1.fc44.noarch" is already installed. Package "python3-devel-3.14.0-2.fc44.x86_64" is already installed. Package "python3-packaging-25.0-7.fc44.noarch" is already installed. Total size of inbound packages is 5 MiB. Need to download 5 MiB. After this operation, 20 MiB extra will be used (install 20 MiB, remove 0 B). [1/2] python3-setuptools-0:78.1.1-15.fc 100% | 8.5 MiB/s | 2.1 MiB | 00m00s [2/2] python3-pip-0:25.2-4.fc44.noarch 100% | 10.3 MiB/s | 2.6 MiB | 00m00s -------------------------------------------------------------------------------- [2/2] Total 100% | 18.3 MiB/s | 4.7 MiB | 00m00s Running transaction [1/4] Verify package files 100% | 117.0 B/s | 2.0 B | 00m00s [2/4] Prepare transaction 100% | 58.0 B/s | 2.0 B | 00m00s [3/4] Installing python3-setuptools-0:7 100% | 119.7 MiB/s | 9.2 MiB | 00m00s [4/4] Installing python3-pip-0:25.2-4.f 100% | 87.3 MiB/s | 11.5 MiB | 00m00s Complete! Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1761609600 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.9PctES + umask 022 + cd /builddir/build/BUILD/python-biopython-1.86-build + cd biopython-1.86 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir + RPM_TOXENV=py314 + FEDORA=44 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-biopython-1.86-build/pyproject-wheeldir --output /builddir/build/BUILD/python-biopython-1.86-build/python-biopython-1.86-1.fc44.x86_64-pyproject-buildrequires Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 78.1.1) /usr/lib/python3.14/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: Freely Distributable See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running egg_info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Doc/_build' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file 'biopython.egg-info/SOURCES.txt' running dist_info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Doc/_build' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file 'biopython.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-biopython-1.86-build/biopython-1.86/biopython-1.86.dist-info' Handling numpy from hook generated metadata: Requires-Dist (biopython) Requirement not satisfied: numpy + cat /builddir/build/BUILD/python-biopython-1.86-build/python-biopython-1.86-1.fc44.x86_64-pyproject-buildrequires + rm -rfv biopython-1.86.dist-info/ removed 'biopython-1.86.dist-info/licenses/LICENSE.rst' removed 'biopython-1.86.dist-info/licenses/LICENSE' removed directory 'biopython-1.86.dist-info/licenses' removed 'biopython-1.86.dist-info/METADATA' removed 'biopython-1.86.dist-info/top_level.txt' removed directory 'biopython-1.86.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-biopython-1.86-1.fc44.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: Copr repository 100% | 46.7 KiB/s | 1.5 KiB | 00m00s fedora 100% | 129.8 KiB/s | 7.9 KiB | 00m00s Repositories loaded. Package "gcc-15.2.1-3.fc44.x86_64" is already installed. Package "pyproject-rpm-macros-1.18.5-1.fc44.noarch" is already installed. Package "python3-devel-3.14.0-2.fc44.x86_64" is already installed. Package "python3-packaging-25.0-7.fc44.noarch" is already installed. Package "python3-pip-25.2-4.fc44.noarch" is already installed. Package "python3-setuptools-78.1.1-15.fc44.noarch" is already installed. Package Arch Version Repository Size Installing: python3-numpy x86_64 1:2.3.4-1.fc44 fedora 41.4 MiB Installing dependencies: flexiblas x86_64 3.5.0-1.fc44 fedora 38.0 KiB flexiblas-netlib x86_64 3.5.0-1.fc44 fedora 16.5 MiB flexiblas-openblas-openmp x86_64 3.5.0-1.fc44 fedora 39.2 KiB libgfortran x86_64 15.2.1-3.fc44 fedora 3.4 MiB libquadmath x86_64 15.2.1-3.fc44 fedora 317.9 KiB openblas x86_64 0.3.29-2.fc43 fedora 111.7 KiB openblas-openmp x86_64 0.3.29-2.fc43 fedora 43.7 MiB python3-numpy-f2py x86_64 1:2.3.4-1.fc44 fedora 2.1 MiB Transaction Summary: Installing: 9 packages Total size of inbound packages is 20 MiB. Need to download 20 MiB. After this operation, 108 MiB extra will be used (install 108 MiB, remove 0 B). [1/9] python3-numpy-f2py-1:2.3.4-1.fc44 100% | 2.7 MiB/s | 510.6 KiB | 00m00s [2/9] flexiblas-0:3.5.0-1.fc44.x86_64 100% | 623.8 KiB/s | 23.1 KiB | 00m00s [3/9] flexiblas-openblas-openmp-0:3.5.0 100% | 493.0 KiB/s | 17.3 KiB | 00m00s [4/9] libgfortran-0:15.2.1-3.fc44.x86_6 100% | 11.4 MiB/s | 971.6 KiB | 00m00s [5/9] flexiblas-netlib-0:3.5.0-1.fc44.x 100% | 11.9 MiB/s | 4.5 MiB | 00m00s [6/9] libquadmath-0:15.2.1-3.fc44.x86_6 100% | 2.2 MiB/s | 204.3 KiB | 00m00s [7/9] python3-numpy-1:2.3.4-1.fc44.x86_ 100% | 18.2 MiB/s | 8.2 MiB | 00m00s [8/9] openblas-0:0.3.29-2.fc43.x86_64 100% | 1.1 MiB/s | 42.3 KiB | 00m00s [9/9] openblas-openmp-0:0.3.29-2.fc43.x 100% | 21.7 MiB/s | 5.4 MiB | 00m00s -------------------------------------------------------------------------------- [9/9] Total 100% | 31.6 MiB/s | 19.8 MiB | 00m01s Running transaction [ 1/11] Verify package files 100% | 121.0 B/s | 9.0 B | 00m00s [ 2/11] Prepare transaction 100% | 219.0 B/s | 9.0 B | 00m00s [ 3/11] Installing libgfortran-0:15.2.1 100% | 279.9 MiB/s | 3.4 MiB | 00m00s [ 4/11] Installing openblas-0:0.3.29-2. 100% | 110.8 MiB/s | 113.5 KiB | 00m00s [ 5/11] Installing openblas-openmp-0:0. 100% | 459.9 MiB/s | 43.7 MiB | 00m00s [ 6/11] Installing libquadmath-0:15.2.1 100% | 155.8 MiB/s | 319.2 KiB | 00m00s [ 7/11] Installing flexiblas-netlib-0:3 100% | 242.8 MiB/s | 16.5 MiB | 00m00s [ 8/11] Installing flexiblas-0:3.5.0-1. 100% | 38.2 MiB/s | 39.2 KiB | 00m00s [ 9/11] Installing flexiblas-openblas-o 100% | 9.8 MiB/s | 40.1 KiB | 00m00s [10/11] Installing python3-numpy-1:2.3. 100% | 220.4 MiB/s | 41.7 MiB | 00m00s [11/11] Installing python3-numpy-f2py-1 100% | 21.7 MiB/s | 2.2 MiB | 00m00s Complete! Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1761609600 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.P8rkHZ + umask 022 + cd /builddir/build/BUILD/python-biopython-1.86-build + cd biopython-1.86 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir + RPM_TOXENV=py314 + FEDORA=44 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-biopython-1.86-build/pyproject-wheeldir --output /builddir/build/BUILD/python-biopython-1.86-build/python-biopython-1.86-1.fc44.x86_64-pyproject-buildrequires Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 78.1.1) /usr/lib/python3.14/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: Freely Distributable See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running egg_info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Doc/_build' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file 'biopython.egg-info/SOURCES.txt' running dist_info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Doc/_build' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file 'biopython.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-biopython-1.86-build/biopython-1.86/biopython-1.86.dist-info' Handling numpy from hook generated metadata: Requires-Dist (biopython) Requirement satisfied: numpy (installed: numpy 2.3.4) + cat /builddir/build/BUILD/python-biopython-1.86-build/python-biopython-1.86-1.fc44.x86_64-pyproject-buildrequires + rm -rfv biopython-1.86.dist-info/ removed 'biopython-1.86.dist-info/licenses/LICENSE.rst' removed 'biopython-1.86.dist-info/licenses/LICENSE' removed directory 'biopython-1.86.dist-info/licenses' removed 'biopython-1.86.dist-info/METADATA' removed 'biopython-1.86.dist-info/top_level.txt' removed directory 'biopython-1.86.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-biopython-1.86-1.fc44.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: Copr repository 100% | 33.5 KiB/s | 1.5 KiB | 00m00s fedora 100% | 108.5 KiB/s | 7.9 KiB | 00m00s Repositories loaded. Nothing to do. Package "gcc-15.2.1-3.fc44.x86_64" is already installed. Package "pyproject-rpm-macros-1.18.5-1.fc44.noarch" is already installed. Package "python3-devel-3.14.0-2.fc44.x86_64" is already installed. Package "python3-numpy-1:2.3.4-1.fc44.x86_64" is already installed. Package "python3-packaging-25.0-7.fc44.noarch" is already installed. Package "python3-pip-25.2-4.fc44.noarch" is already installed. Package "python3-setuptools-78.1.1-15.fc44.noarch" is already installed. Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1761609600 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.prXDy8 + umask 022 + cd /builddir/build/BUILD/python-biopython-1.86-build + cd biopython-1.86 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir + RPM_TOXENV=py314 + FEDORA=44 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-biopython-1.86-build/pyproject-wheeldir --output /builddir/build/BUILD/python-biopython-1.86-build/python-biopython-1.86-1.fc44.x86_64-pyproject-buildrequires Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 78.1.1) /usr/lib/python3.14/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: Freely Distributable See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running egg_info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Doc/_build' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file 'biopython.egg-info/SOURCES.txt' running dist_info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Doc/_build' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file 'biopython.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-biopython-1.86-build/biopython-1.86/biopython-1.86.dist-info' Handling numpy from hook generated metadata: Requires-Dist (biopython) Requirement satisfied: numpy (installed: numpy 2.3.4) + cat /builddir/build/BUILD/python-biopython-1.86-build/python-biopython-1.86-1.fc44.x86_64-pyproject-buildrequires + rm -rfv biopython-1.86.dist-info/ removed 'biopython-1.86.dist-info/licenses/LICENSE.rst' removed 'biopython-1.86.dist-info/licenses/LICENSE' removed directory 'biopython-1.86.dist-info/licenses' removed 'biopython-1.86.dist-info/METADATA' removed 'biopython-1.86.dist-info/top_level.txt' removed directory 'biopython-1.86.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.nPQypd + umask 022 + cd /builddir/build/BUILD/python-biopython-1.86-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd biopython-1.86 + mkdir -p /builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/python-biopython-1.86-build/pyproject-wheeldir Processing /builddir/build/BUILD/python-biopython-1.86-build/biopython-1.86 Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) /usr/lib/python3.14/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: Freely Distributable See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running dist_info creating /builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir/pip-modern-metadata-5nnvn8cm/biopython.egg-info writing /builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir/pip-modern-metadata-5nnvn8cm/biopython.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir/pip-modern-metadata-5nnvn8cm/biopython.egg-info/dependency_links.txt writing requirements to /builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir/pip-modern-metadata-5nnvn8cm/biopython.egg-info/requires.txt writing top-level names to /builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir/pip-modern-metadata-5nnvn8cm/biopython.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir/pip-modern-metadata-5nnvn8cm/biopython.egg-info/SOURCES.txt' reading manifest file '/builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir/pip-modern-metadata-5nnvn8cm/biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Doc/_build' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file '/builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir/pip-modern-metadata-5nnvn8cm/biopython.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir/pip-modern-metadata-5nnvn8cm/biopython-1.86.dist-info' Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: biopython Building wheel for biopython (pyproject.toml): started Running command Building wheel for biopython (pyproject.toml) /usr/lib/python3.14/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: Freely Distributable See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running bdist_wheel running build running build_py creating build/lib.linux-x86_64-cpython-314/Bio copying Bio/pairwise2.py -> build/lib.linux-x86_64-cpython-314/Bio copying Bio/bgzf.py -> build/lib.linux-x86_64-cpython-314/Bio copying Bio/_utils.py -> build/lib.linux-x86_64-cpython-314/Bio copying Bio/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio copying Bio/SeqRecord.py -> build/lib.linux-x86_64-cpython-314/Bio copying Bio/SeqFeature.py -> build/lib.linux-x86_64-cpython-314/Bio copying Bio/Seq.py -> build/lib.linux-x86_64-cpython-314/Bio copying Bio/File.py -> build/lib.linux-x86_64-cpython-314/Bio creating build/lib.linux-x86_64-cpython-314/Bio/Affy copying Bio/Affy/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Affy copying Bio/Affy/CelFile.py -> build/lib.linux-x86_64-cpython-314/Bio/Affy creating build/lib.linux-x86_64-cpython-314/Bio/Align copying Bio/Align/tabular.py -> build/lib.linux-x86_64-cpython-314/Bio/Align copying Bio/Align/stockholm.py -> build/lib.linux-x86_64-cpython-314/Bio/Align copying Bio/Align/sam.py -> build/lib.linux-x86_64-cpython-314/Bio/Align copying Bio/Align/psl.py -> build/lib.linux-x86_64-cpython-314/Bio/Align copying Bio/Align/phylip.py -> build/lib.linux-x86_64-cpython-314/Bio/Align copying Bio/Align/nexus.py -> build/lib.linux-x86_64-cpython-314/Bio/Align copying Bio/Align/msf.py -> build/lib.linux-x86_64-cpython-314/Bio/Align copying Bio/Align/mauve.py -> build/lib.linux-x86_64-cpython-314/Bio/Align copying Bio/Align/maf.py -> build/lib.linux-x86_64-cpython-314/Bio/Align copying Bio/Align/interfaces.py -> build/lib.linux-x86_64-cpython-314/Bio/Align copying Bio/Align/hhr.py -> build/lib.linux-x86_64-cpython-314/Bio/Align copying Bio/Align/fasta.py -> build/lib.linux-x86_64-cpython-314/Bio/Align copying Bio/Align/exonerate.py -> build/lib.linux-x86_64-cpython-314/Bio/Align copying Bio/Align/emboss.py -> build/lib.linux-x86_64-cpython-314/Bio/Align copying Bio/Align/clustal.py -> build/lib.linux-x86_64-cpython-314/Bio/Align copying Bio/Align/chain.py -> build/lib.linux-x86_64-cpython-314/Bio/Align copying Bio/Align/bigpsl.py -> build/lib.linux-x86_64-cpython-314/Bio/Align copying Bio/Align/bigmaf.py -> build/lib.linux-x86_64-cpython-314/Bio/Align copying Bio/Align/bigbed.py -> build/lib.linux-x86_64-cpython-314/Bio/Align copying Bio/Align/bed.py -> build/lib.linux-x86_64-cpython-314/Bio/Align copying Bio/Align/analysis.py -> build/lib.linux-x86_64-cpython-314/Bio/Align copying Bio/Align/a2m.py -> build/lib.linux-x86_64-cpython-314/Bio/Align copying Bio/Align/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Align copying Bio/Align/AlignInfo.py -> build/lib.linux-x86_64-cpython-314/Bio/Align creating build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices copying Bio/Align/substitution_matrices/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices creating build/lib.linux-x86_64-cpython-314/Bio/AlignIO copying Bio/AlignIO/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/AlignIO copying Bio/AlignIO/StockholmIO.py -> build/lib.linux-x86_64-cpython-314/Bio/AlignIO copying Bio/AlignIO/PhylipIO.py -> build/lib.linux-x86_64-cpython-314/Bio/AlignIO copying Bio/AlignIO/NexusIO.py -> build/lib.linux-x86_64-cpython-314/Bio/AlignIO copying Bio/AlignIO/MsfIO.py -> build/lib.linux-x86_64-cpython-314/Bio/AlignIO copying Bio/AlignIO/MauveIO.py -> build/lib.linux-x86_64-cpython-314/Bio/AlignIO copying Bio/AlignIO/MafIO.py -> build/lib.linux-x86_64-cpython-314/Bio/AlignIO copying Bio/AlignIO/Interfaces.py -> build/lib.linux-x86_64-cpython-314/Bio/AlignIO copying Bio/AlignIO/FastaIO.py -> build/lib.linux-x86_64-cpython-314/Bio/AlignIO copying Bio/AlignIO/EmbossIO.py -> build/lib.linux-x86_64-cpython-314/Bio/AlignIO copying Bio/AlignIO/ClustalIO.py -> build/lib.linux-x86_64-cpython-314/Bio/AlignIO creating build/lib.linux-x86_64-cpython-314/Bio/Alphabet copying Bio/Alphabet/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Alphabet creating build/lib.linux-x86_64-cpython-314/Bio/Blast copying Bio/Blast/_writers.py -> build/lib.linux-x86_64-cpython-314/Bio/Blast copying Bio/Blast/_parser.py -> build/lib.linux-x86_64-cpython-314/Bio/Blast copying Bio/Blast/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Blast copying Bio/Blast/NCBIXML.py -> build/lib.linux-x86_64-cpython-314/Bio/Blast copying Bio/Blast/NCBIWWW.py -> build/lib.linux-x86_64-cpython-314/Bio/Blast creating build/lib.linux-x86_64-cpython-314/Bio/CAPS copying Bio/CAPS/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/CAPS creating build/lib.linux-x86_64-cpython-314/Bio/Cluster copying Bio/Cluster/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Cluster creating build/lib.linux-x86_64-cpython-314/Bio/codonalign copying Bio/codonalign/codonseq.py -> build/lib.linux-x86_64-cpython-314/Bio/codonalign copying Bio/codonalign/codonalignment.py -> build/lib.linux-x86_64-cpython-314/Bio/codonalign copying Bio/codonalign/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/codonalign creating build/lib.linux-x86_64-cpython-314/Bio/Compass copying Bio/Compass/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Compass creating build/lib.linux-x86_64-cpython-314/Bio/Data copying Bio/Data/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Data copying Bio/Data/PDBData.py -> build/lib.linux-x86_64-cpython-314/Bio/Data copying Bio/Data/IUPACData.py -> build/lib.linux-x86_64-cpython-314/Bio/Data copying Bio/Data/CodonTable.py -> build/lib.linux-x86_64-cpython-314/Bio/Data creating build/lib.linux-x86_64-cpython-314/Bio/Emboss copying Bio/Emboss/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Emboss copying Bio/Emboss/PrimerSearch.py -> build/lib.linux-x86_64-cpython-314/Bio/Emboss copying Bio/Emboss/Primer3.py -> build/lib.linux-x86_64-cpython-314/Bio/Emboss creating build/lib.linux-x86_64-cpython-314/Bio/Entrez copying Bio/Entrez/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Entrez copying Bio/Entrez/Parser.py -> build/lib.linux-x86_64-cpython-314/Bio/Entrez creating build/lib.linux-x86_64-cpython-314/Bio/ExPASy copying Bio/ExPASy/cellosaurus.py -> build/lib.linux-x86_64-cpython-314/Bio/ExPASy copying Bio/ExPASy/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/ExPASy copying Bio/ExPASy/ScanProsite.py -> build/lib.linux-x86_64-cpython-314/Bio/ExPASy copying Bio/ExPASy/Prosite.py -> build/lib.linux-x86_64-cpython-314/Bio/ExPASy copying Bio/ExPASy/Prodoc.py -> build/lib.linux-x86_64-cpython-314/Bio/ExPASy copying Bio/ExPASy/Enzyme.py -> build/lib.linux-x86_64-cpython-314/Bio/ExPASy creating build/lib.linux-x86_64-cpython-314/Bio/GenBank copying Bio/GenBank/utils.py -> build/lib.linux-x86_64-cpython-314/Bio/GenBank copying Bio/GenBank/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/GenBank copying Bio/GenBank/Scanner.py -> build/lib.linux-x86_64-cpython-314/Bio/GenBank copying Bio/GenBank/Record.py -> build/lib.linux-x86_64-cpython-314/Bio/GenBank creating build/lib.linux-x86_64-cpython-314/Bio/Geo copying Bio/Geo/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Geo copying Bio/Geo/Record.py -> build/lib.linux-x86_64-cpython-314/Bio/Geo creating build/lib.linux-x86_64-cpython-314/Bio/Graphics copying Bio/Graphics/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics copying Bio/Graphics/KGML_vis.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics copying Bio/Graphics/Distribution.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics copying Bio/Graphics/DisplayRepresentation.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics copying Bio/Graphics/Comparative.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics copying Bio/Graphics/ColorSpiral.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics copying Bio/Graphics/BasicChromosome.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics creating build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Track.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Graph.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Feature.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Diagram.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Colors.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram creating build/lib.linux-x86_64-cpython-314/Bio/HMM copying Bio/HMM/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/HMM creating build/lib.linux-x86_64-cpython-314/Bio/KEGG copying Bio/KEGG/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/KEGG copying Bio/KEGG/REST.py -> build/lib.linux-x86_64-cpython-314/Bio/KEGG creating build/lib.linux-x86_64-cpython-314/Bio/KEGG/Compound copying Bio/KEGG/Compound/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/KEGG/Compound creating build/lib.linux-x86_64-cpython-314/Bio/KEGG/Enzyme copying Bio/KEGG/Enzyme/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/KEGG/Enzyme creating build/lib.linux-x86_64-cpython-314/Bio/KEGG/Gene copying Bio/KEGG/Gene/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/KEGG/Gene creating build/lib.linux-x86_64-cpython-314/Bio/KEGG/Map copying Bio/KEGG/Map/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/KEGG/Map creating build/lib.linux-x86_64-cpython-314/Bio/PDB/mmtf copying Bio/PDB/mmtf/mmtfio.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB/mmtf copying Bio/PDB/mmtf/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB/mmtf copying Bio/PDB/mmtf/DefaultParser.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB/mmtf creating build/lib.linux-x86_64-cpython-314/Bio/KEGG/KGML copying Bio/KEGG/KGML/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_pathway.py -> build/lib.linux-x86_64-cpython-314/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_parser.py -> build/lib.linux-x86_64-cpython-314/Bio/KEGG/KGML creating build/lib.linux-x86_64-cpython-314/Bio/Medline copying Bio/Medline/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Medline creating build/lib.linux-x86_64-cpython-314/Bio/motifs copying Bio/motifs/xms.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs copying Bio/motifs/transfac.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs copying Bio/motifs/thresholds.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs copying Bio/motifs/pfm.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs copying Bio/motifs/minimal.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs copying Bio/motifs/meme.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs copying Bio/motifs/matrix.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs copying Bio/motifs/mast.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs copying Bio/motifs/clusterbuster.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs copying Bio/motifs/alignace.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs copying Bio/motifs/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs creating build/lib.linux-x86_64-cpython-314/Bio/motifs/jaspar copying Bio/motifs/jaspar/db.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs/jaspar copying Bio/motifs/jaspar/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs/jaspar creating build/lib.linux-x86_64-cpython-314/Bio/Nexus copying Bio/Nexus/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Nexus copying Bio/Nexus/Trees.py -> build/lib.linux-x86_64-cpython-314/Bio/Nexus copying Bio/Nexus/StandardData.py -> build/lib.linux-x86_64-cpython-314/Bio/Nexus copying Bio/Nexus/Nodes.py -> build/lib.linux-x86_64-cpython-314/Bio/Nexus copying Bio/Nexus/Nexus.py -> build/lib.linux-x86_64-cpython-314/Bio/Nexus creating build/lib.linux-x86_64-cpython-314/Bio/NMR copying Bio/NMR/xpktools.py -> build/lib.linux-x86_64-cpython-314/Bio/NMR copying Bio/NMR/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/NMR copying Bio/NMR/NOEtools.py -> build/lib.linux-x86_64-cpython-314/Bio/NMR creating build/lib.linux-x86_64-cpython-314/Bio/Pathway copying Bio/Pathway/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Pathway creating build/lib.linux-x86_64-cpython-314/Bio/Pathway/Rep copying Bio/Pathway/Rep/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Pathway/Rep copying Bio/Pathway/Rep/MultiGraph.py -> build/lib.linux-x86_64-cpython-314/Bio/Pathway/Rep copying Bio/Pathway/Rep/Graph.py -> build/lib.linux-x86_64-cpython-314/Bio/Pathway/Rep copying Bio/PDB/vectors.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB copying Bio/PDB/qcprot.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB copying Bio/PDB/parse_pdb_header.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB copying Bio/PDB/mmcifio.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB copying Bio/PDB/internal_coords.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB copying Bio/PDB/ic_rebuild.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB copying Bio/PDB/ic_data.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB copying Bio/PDB/cealign.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB copying Bio/PDB/binary_cif.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB copying Bio/PDB/alphafold_db.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB copying Bio/PDB/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB copying Bio/PDB/Superimposer.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB copying Bio/PDB/StructureBuilder.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB copying Bio/PDB/StructureAlignment.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB copying Bio/PDB/Structure.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB copying Bio/PDB/Selection.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB copying Bio/PDB/SCADIO.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB copying Bio/PDB/SASA.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB copying Bio/PDB/ResidueDepth.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB copying Bio/PDB/Residue.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB copying Bio/PDB/Polypeptide.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB copying Bio/PDB/PSEA.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB copying Bio/PDB/PICIO.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB copying Bio/PDB/PDBParser.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB copying Bio/PDB/PDBMLParser.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB copying Bio/PDB/PDBList.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB copying Bio/PDB/PDBIO.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB copying Bio/PDB/PDBExceptions.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB copying Bio/PDB/NeighborSearch.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB copying Bio/PDB/NACCESS.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB copying Bio/PDB/Model.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB copying Bio/PDB/MMCIFParser.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB copying Bio/PDB/MMCIF2Dict.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB copying Bio/PDB/HSExposure.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB copying Bio/PDB/FragmentMapper.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB copying Bio/PDB/Entity.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB copying Bio/PDB/Dice.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB copying Bio/PDB/DSSP.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB copying Bio/PDB/Chain.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB copying Bio/PDB/Atom.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB copying Bio/PDB/AbstractPropertyMap.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB creating build/lib.linux-x86_64-cpython-314/Bio/phenotype copying Bio/phenotype/pm_fitting.py -> build/lib.linux-x86_64-cpython-314/Bio/phenotype copying Bio/phenotype/phen_micro.py -> build/lib.linux-x86_64-cpython-314/Bio/phenotype copying Bio/phenotype/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/phenotype creating build/lib.linux-x86_64-cpython-314/Bio/PopGen copying Bio/PopGen/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/PopGen creating build/lib.linux-x86_64-cpython-314/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/LargeFileParser.py -> build/lib.linux-x86_64-cpython-314/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/FileParser.py -> build/lib.linux-x86_64-cpython-314/Bio/PopGen/GenePop creating build/lib.linux-x86_64-cpython-314/Bio/Restriction copying Bio/Restriction/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Restriction copying Bio/Restriction/Restriction_Dictionary.py -> build/lib.linux-x86_64-cpython-314/Bio/Restriction copying Bio/Restriction/Restriction.py -> build/lib.linux-x86_64-cpython-314/Bio/Restriction copying Bio/Restriction/PrintFormat.py -> build/lib.linux-x86_64-cpython-314/Bio/Restriction creating build/lib.linux-x86_64-cpython-314/Bio/SCOP copying Bio/SCOP/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SCOP copying Bio/SCOP/Residues.py -> build/lib.linux-x86_64-cpython-314/Bio/SCOP copying Bio/SCOP/Raf.py -> build/lib.linux-x86_64-cpython-314/Bio/SCOP copying Bio/SCOP/Hie.py -> build/lib.linux-x86_64-cpython-314/Bio/SCOP copying Bio/SCOP/Dom.py -> build/lib.linux-x86_64-cpython-314/Bio/SCOP copying Bio/SCOP/Des.py -> build/lib.linux-x86_64-cpython-314/Bio/SCOP copying Bio/SCOP/Cla.py -> build/lib.linux-x86_64-cpython-314/Bio/SCOP creating build/lib.linux-x86_64-cpython-314/Bio/SearchIO copying Bio/SearchIO/_utils.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO copying Bio/SearchIO/_index.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO copying Bio/SearchIO/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO copying Bio/SearchIO/FastaIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO copying Bio/SearchIO/BlatIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO creating build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_model copying Bio/SearchIO/_model/query.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_model copying Bio/SearchIO/_model/hsp.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_model copying Bio/SearchIO/_model/hit.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_model copying Bio/SearchIO/_model/_base.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_model copying Bio/SearchIO/_model/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_model creating build/lib.linux-x86_64-cpython-314/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_xml.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_tab.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/BlastIO creating build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HHsuiteIO copying Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HHsuiteIO copying Bio/SearchIO/HHsuiteIO/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HHsuiteIO creating build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/_base.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO creating build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InfernalIO copying Bio/SearchIO/InfernalIO/infernal_text.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InfernalIO copying Bio/SearchIO/InfernalIO/infernal_tab.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InfernalIO copying Bio/SearchIO/InfernalIO/_base.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InfernalIO copying Bio/SearchIO/InfernalIO/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InfernalIO creating build/lib.linux-x86_64-cpython-314/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/_base.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/ExonerateIO creating build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InterproscanIO copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InterproscanIO copying Bio/SearchIO/InterproscanIO/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InterproscanIO creating build/lib.linux-x86_64-cpython-314/Bio/SeqIO copying Bio/SeqIO/_index.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO copying Bio/SeqIO/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO copying Bio/SeqIO/XdnaIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO copying Bio/SeqIO/UniprotIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO copying Bio/SeqIO/TwoBitIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO copying Bio/SeqIO/TabIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO copying Bio/SeqIO/SwissIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO copying Bio/SeqIO/SnapGeneIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO copying Bio/SeqIO/SffIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO copying Bio/SeqIO/SeqXmlIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO copying Bio/SeqIO/QualityIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO copying Bio/SeqIO/PirIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO copying Bio/SeqIO/PhdIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO copying Bio/SeqIO/PdbIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO copying Bio/SeqIO/NibIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO copying Bio/SeqIO/Interfaces.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO copying Bio/SeqIO/InsdcIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO copying Bio/SeqIO/IgIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO copying Bio/SeqIO/GfaIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO copying Bio/SeqIO/GckIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO copying Bio/SeqIO/FastaIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO copying Bio/SeqIO/AceIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO copying Bio/SeqIO/AbiIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO creating build/lib.linux-x86_64-cpython-314/Bio/SeqUtils copying Bio/SeqUtils/lcc.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqUtils copying Bio/SeqUtils/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqUtils copying Bio/SeqUtils/ProtParamData.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqUtils copying Bio/SeqUtils/ProtParam.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqUtils copying Bio/SeqUtils/MeltingTemp.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqUtils copying Bio/SeqUtils/IsoelectricPoint.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqUtils copying Bio/SeqUtils/CheckSum.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqUtils creating build/lib.linux-x86_64-cpython-314/Bio/Sequencing copying Bio/Sequencing/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Sequencing copying Bio/Sequencing/Phd.py -> build/lib.linux-x86_64-cpython-314/Bio/Sequencing copying Bio/Sequencing/Ace.py -> build/lib.linux-x86_64-cpython-314/Bio/Sequencing creating build/lib.linux-x86_64-cpython-314/Bio/SVDSuperimposer copying Bio/SVDSuperimposer/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SVDSuperimposer creating build/lib.linux-x86_64-cpython-314/Bio/SwissProt copying Bio/SwissProt/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SwissProt copying Bio/SwissProt/KeyWList.py -> build/lib.linux-x86_64-cpython-314/Bio/SwissProt creating build/lib.linux-x86_64-cpython-314/Bio/TogoWS copying Bio/TogoWS/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/TogoWS creating build/lib.linux-x86_64-cpython-314/Bio/Phylo copying Bio/Phylo/_utils.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo copying Bio/Phylo/_io.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo copying Bio/Phylo/_cdao_owl.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo copying Bio/Phylo/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo copying Bio/Phylo/TreeConstruction.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo copying Bio/Phylo/PhyloXMLIO.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo copying Bio/Phylo/PhyloXML.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo copying Bio/Phylo/NexusIO.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo copying Bio/Phylo/NewickIO.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo copying Bio/Phylo/Newick.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo copying Bio/Phylo/NeXMLIO.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo copying Bio/Phylo/NeXML.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo copying Bio/Phylo/Consensus.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo copying Bio/Phylo/CDAOIO.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo copying Bio/Phylo/CDAO.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo copying Bio/Phylo/BaseTree.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo creating build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML copying Bio/Phylo/PAML/yn00.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML copying Bio/Phylo/PAML/codeml.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML copying Bio/Phylo/PAML/chi2.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML copying Bio/Phylo/PAML/baseml.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_yn00.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_codeml.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_baseml.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML copying Bio/Phylo/PAML/_paml.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML copying Bio/Phylo/PAML/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML creating build/lib.linux-x86_64-cpython-314/Bio/UniGene copying Bio/UniGene/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/UniGene creating build/lib.linux-x86_64-cpython-314/Bio/UniProt copying Bio/UniProt/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/UniProt copying Bio/UniProt/GOA.py -> build/lib.linux-x86_64-cpython-314/Bio/UniProt creating build/lib.linux-x86_64-cpython-314/BioSQL copying BioSQL/__init__.py -> build/lib.linux-x86_64-cpython-314/BioSQL copying BioSQL/Loader.py -> build/lib.linux-x86_64-cpython-314/BioSQL copying BioSQL/DBUtils.py -> build/lib.linux-x86_64-cpython-314/BioSQL copying BioSQL/BioSeqDatabase.py -> build/lib.linux-x86_64-cpython-314/BioSQL copying BioSQL/BioSeq.py -> build/lib.linux-x86_64-cpython-314/BioSQL running egg_info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Doc/_build' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file 'biopython.egg-info/SOURCES.txt' /usr/lib/python3.14/site-packages/setuptools/command/build_py.py:212: _Warning: Package 'Bio.Align.substitution_matrices' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Align.substitution_matrices' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Align.substitution_matrices' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Align.substitution_matrices' to be distributed and are already explicitly excluding 'Bio.Align.substitution_matrices' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) copying Bio/cpairwise2module.c -> build/lib.linux-x86_64-cpython-314/Bio copying Bio/py.typed -> build/lib.linux-x86_64-cpython-314/Bio copying Bio/Align/_aligncore.c -> build/lib.linux-x86_64-cpython-314/Bio/Align copying Bio/Align/_alignmentcounts.c -> build/lib.linux-x86_64-cpython-314/Bio/Align copying Bio/Align/_codonaligner.c -> build/lib.linux-x86_64-cpython-314/Bio/Align copying Bio/Align/_pairwisealigner.c -> build/lib.linux-x86_64-cpython-314/Bio/Align copying Bio/Align/_pairwisealigner.h -> build/lib.linux-x86_64-cpython-314/Bio/Align copying Bio/Align/substitution_matrices/_arraycore.c -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices copying Bio/Align/substitution_matrices/_arraycore.h -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices creating build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER22 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER6 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER74 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLASTN -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLASTP -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM45 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM50 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM62 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM80 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM90 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/DAYHOFF -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/FENG -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/GENETIC -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/GONNET1992 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/HOXD70 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/JOHNSON -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/JONES -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/LEVIN -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/MCLACHLAN -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/MDM78 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/MEGABLAST -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/NUC.4.4 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM250 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM30 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM70 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/RAO -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/RISLER -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/SCHNEIDER -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/STR -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/TRANS -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data copying Bio/Cluster/cluster.c -> build/lib.linux-x86_64-cpython-314/Bio/Cluster copying Bio/Cluster/cluster.h -> build/lib.linux-x86_64-cpython-314/Bio/Cluster copying Bio/Cluster/clustermodule.c -> build/lib.linux-x86_64-cpython-314/Bio/Cluster creating build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-common1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-display1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-format1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-funding1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-link1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-list1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-math1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-modules1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-notat1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-para1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-phrase1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-references1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-related-object1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-section1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Access.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cdd.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_General.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medlars.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mime.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Project.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Protein.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Pub.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PubMed.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Remap.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Rsite.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqres.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Submit.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Systems.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TxInit.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Variation.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_all.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NSE.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NSE.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/OMSSA.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/OMSSA.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PIR_General.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PIR_General.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/SP_General.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/SP_General.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/XHTMLtablesetup.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivearticle.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-classes.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-mixes.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-models.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-modules.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/articlemeta.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/backmatter.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_100301.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_110101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_120101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_130101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_140101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_150101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/chars.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/common.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-classes.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-mixes.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/display.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eInfo_020511.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eLink_090910.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eLink_101123.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/ePost_020511.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSearch_020511.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSpell.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSummary_041029.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/egquery.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/einfo.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/elink.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/elink_020122.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/epost.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esearch.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esummary-v1.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esummary_clinvar.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esummary_gene.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/format.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/htmltable.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsa.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsb.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsc.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsn.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamso.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsr.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isobox.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr1.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr2.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isodia.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk1.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk2.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk4.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat1.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat2.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomfrk.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomopf.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomscr.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isonum.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isopub.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isotech.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/journalmeta.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/link.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/list.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/math.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml2.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml3-qname1.mod -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml3.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathmlsetup.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlalias.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlextra.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/modules.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/notat.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/para.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/phrase.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pmc-1.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_020114.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_080101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_090101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100301.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_110101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_120101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_130101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_130501.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_140101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_150101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_180101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_180601.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_190101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/references.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/section.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/taxon.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/xhtml-table-1.mod -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/xmlspecchars.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs creating build/lib.linux-x86_64-cpython-314/Bio/Entrez/XSDs copying Bio/Entrez/XSDs/IPGReportSet.xsd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/XSDs copying Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/XSDs copying Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/XSDs copying Bio/motifs/_pwm.c -> build/lib.linux-x86_64-cpython-314/Bio/motifs copying Bio/Nexus/cnexus.c -> build/lib.linux-x86_64-cpython-314/Bio/Nexus copying Bio/PDB/bcifhelpermodule.c -> build/lib.linux-x86_64-cpython-314/Bio/PDB copying Bio/PDB/ccealignmodule.c -> build/lib.linux-x86_64-cpython-314/Bio/PDB copying Bio/PDB/kdtrees.c -> build/lib.linux-x86_64-cpython-314/Bio/PDB copying Bio/SeqIO/_twoBitIO.c -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO copying BioSQL/py.typed -> build/lib.linux-x86_64-cpython-314/BioSQL running build_ext building 'Bio.Align._aligncore' extension creating build/temp.linux-x86_64-cpython-314/Bio/Align gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/include/python3.14 -c Bio/Align/_aligncore.c -o build/temp.linux-x86_64-cpython-314/Bio/Align/_aligncore.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-314/Bio/Align/_aligncore.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-314/Bio/Align/_aligncore.cpython-314-x86_64-linux-gnu.so building 'Bio.Align._alignmentcounts' extension gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/include/python3.14 -c Bio/Align/_alignmentcounts.c -o build/temp.linux-x86_64-cpython-314/Bio/Align/_alignmentcounts.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-314/Bio/Align/_alignmentcounts.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-314/Bio/Align/_alignmentcounts.cpython-314-x86_64-linux-gnu.so building 'Bio.Align._codonaligner' extension gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/include/python3.14 -c Bio/Align/_codonaligner.c -o build/temp.linux-x86_64-cpython-314/Bio/Align/_codonaligner.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-314/Bio/Align/_codonaligner.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-314/Bio/Align/_codonaligner.cpython-314-x86_64-linux-gnu.so building 'Bio.Align._pairwisealigner' extension gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/include/python3.14 -c Bio/Align/_pairwisealigner.c -o build/temp.linux-x86_64-cpython-314/Bio/Align/_pairwisealigner.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-314/Bio/Align/_pairwisealigner.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-314/Bio/Align/_pairwisealigner.cpython-314-x86_64-linux-gnu.so building 'Bio.Align.substitution_matrices._arraycore' extension creating build/temp.linux-x86_64-cpython-314/Bio/Align/substitution_matrices gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/include/python3.14 -c Bio/Align//substitution_matrices/_arraycore.c -o build/temp.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/_arraycore.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/_arraycore.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/_arraycore.cpython-314-x86_64-linux-gnu.so building 'Bio.cpairwise2' extension gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/include/python3.14 -c Bio/cpairwise2module.c -o build/temp.linux-x86_64-cpython-314/Bio/cpairwise2module.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-314/Bio/cpairwise2module.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-314/Bio/cpairwise2.cpython-314-x86_64-linux-gnu.so building 'Bio.Nexus.cnexus' extension creating build/temp.linux-x86_64-cpython-314/Bio/Nexus gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/include/python3.14 -c Bio/Nexus/cnexus.c -o build/temp.linux-x86_64-cpython-314/Bio/Nexus/cnexus.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-314/Bio/Nexus/cnexus.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-314/Bio/Nexus/cnexus.cpython-314-x86_64-linux-gnu.so building 'Bio.motifs._pwm' extension creating build/temp.linux-x86_64-cpython-314/Bio/motifs gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/include/python3.14 -c Bio/motifs/_pwm.c -o build/temp.linux-x86_64-cpython-314/Bio/motifs/_pwm.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-314/Bio/motifs/_pwm.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-314/Bio/motifs/_pwm.cpython-314-x86_64-linux-gnu.so building 'Bio.Cluster._cluster' extension creating build/temp.linux-x86_64-cpython-314/Bio/Cluster gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/include/python3.14 -c Bio/Cluster/cluster.c -o build/temp.linux-x86_64-cpython-314/Bio/Cluster/cluster.o -DCLUSTER_USE_PYTHON_MEMORY gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/include/python3.14 -c Bio/Cluster/clustermodule.c -o build/temp.linux-x86_64-cpython-314/Bio/Cluster/clustermodule.o -DCLUSTER_USE_PYTHON_MEMORY gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-314/Bio/Cluster/cluster.o build/temp.linux-x86_64-cpython-314/Bio/Cluster/clustermodule.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-314/Bio/Cluster/_cluster.cpython-314-x86_64-linux-gnu.so building 'Bio.PDB.ccealign' extension creating build/temp.linux-x86_64-cpython-314/Bio/PDB gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/include/python3.14 -c Bio/PDB/ccealignmodule.c -o build/temp.linux-x86_64-cpython-314/Bio/PDB/ccealignmodule.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-314/Bio/PDB/ccealignmodule.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-314/Bio/PDB/ccealign.cpython-314-x86_64-linux-gnu.so building 'Bio.PDB.kdtrees' extension gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/include/python3.14 -c Bio/PDB/kdtrees.c -o build/temp.linux-x86_64-cpython-314/Bio/PDB/kdtrees.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-314/Bio/PDB/kdtrees.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-314/Bio/PDB/kdtrees.cpython-314-x86_64-linux-gnu.so building 'Bio.PDB._bcif_helper' extension gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/include/python3.14 -c Bio/PDB/bcifhelpermodule.c -o build/temp.linux-x86_64-cpython-314/Bio/PDB/bcifhelpermodule.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-314/Bio/PDB/bcifhelpermodule.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-314/Bio/PDB/_bcif_helper.cpython-314-x86_64-linux-gnu.so building 'Bio.SeqIO._twoBitIO' extension creating build/temp.linux-x86_64-cpython-314/Bio/SeqIO gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/include/python3.14 -c Bio/SeqIO/_twoBitIO.c -o build/temp.linux-x86_64-cpython-314/Bio/SeqIO/_twoBitIO.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-314/Bio/SeqIO/_twoBitIO.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-314/Bio/SeqIO/_twoBitIO.cpython-314-x86_64-linux-gnu.so installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/BioSQL copying build/lib.linux-x86_64-cpython-314/BioSQL/py.typed -> build/bdist.linux-x86_64/wheel/./BioSQL copying build/lib.linux-x86_64-cpython-314/BioSQL/BioSeq.py -> build/bdist.linux-x86_64/wheel/./BioSQL copying build/lib.linux-x86_64-cpython-314/BioSQL/BioSeqDatabase.py -> build/bdist.linux-x86_64/wheel/./BioSQL copying build/lib.linux-x86_64-cpython-314/BioSQL/DBUtils.py -> build/bdist.linux-x86_64/wheel/./BioSQL copying build/lib.linux-x86_64-cpython-314/BioSQL/Loader.py -> build/bdist.linux-x86_64/wheel/./BioSQL copying build/lib.linux-x86_64-cpython-314/BioSQL/__init__.py -> build/bdist.linux-x86_64/wheel/./BioSQL creating build/bdist.linux-x86_64/wheel/Bio copying build/lib.linux-x86_64-cpython-314/Bio/cpairwise2.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./Bio copying build/lib.linux-x86_64-cpython-314/Bio/py.typed -> build/bdist.linux-x86_64/wheel/./Bio copying build/lib.linux-x86_64-cpython-314/Bio/cpairwise2module.c -> build/bdist.linux-x86_64/wheel/./Bio creating build/bdist.linux-x86_64/wheel/Bio/UniProt copying build/lib.linux-x86_64-cpython-314/Bio/UniProt/GOA.py -> build/bdist.linux-x86_64/wheel/./Bio/UniProt copying build/lib.linux-x86_64-cpython-314/Bio/UniProt/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/UniProt creating build/bdist.linux-x86_64/wheel/Bio/UniGene copying build/lib.linux-x86_64-cpython-314/Bio/UniGene/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/UniGene creating build/bdist.linux-x86_64/wheel/Bio/Phylo creating build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML/_paml.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML/_parse_baseml.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML/_parse_codeml.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML/_parse_yn00.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML/baseml.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML/chi2.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML/codeml.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML/yn00.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/BaseTree.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/CDAO.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/CDAOIO.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/Consensus.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/NeXML.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/NeXMLIO.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/Newick.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/NewickIO.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/NexusIO.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/PhyloXML.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/PhyloXMLIO.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/TreeConstruction.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/_cdao_owl.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/_io.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/_utils.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo creating build/bdist.linux-x86_64/wheel/Bio/TogoWS copying build/lib.linux-x86_64-cpython-314/Bio/TogoWS/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/TogoWS creating build/bdist.linux-x86_64/wheel/Bio/SwissProt copying build/lib.linux-x86_64-cpython-314/Bio/SwissProt/KeyWList.py -> build/bdist.linux-x86_64/wheel/./Bio/SwissProt copying build/lib.linux-x86_64-cpython-314/Bio/SwissProt/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SwissProt creating build/bdist.linux-x86_64/wheel/Bio/SVDSuperimposer copying build/lib.linux-x86_64-cpython-314/Bio/SVDSuperimposer/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SVDSuperimposer creating build/bdist.linux-x86_64/wheel/Bio/Sequencing copying build/lib.linux-x86_64-cpython-314/Bio/Sequencing/Ace.py -> build/bdist.linux-x86_64/wheel/./Bio/Sequencing copying build/lib.linux-x86_64-cpython-314/Bio/Sequencing/Phd.py -> build/bdist.linux-x86_64/wheel/./Bio/Sequencing copying build/lib.linux-x86_64-cpython-314/Bio/Sequencing/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Sequencing creating build/bdist.linux-x86_64/wheel/Bio/SeqUtils copying build/lib.linux-x86_64-cpython-314/Bio/SeqUtils/CheckSum.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqUtils copying build/lib.linux-x86_64-cpython-314/Bio/SeqUtils/IsoelectricPoint.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqUtils copying build/lib.linux-x86_64-cpython-314/Bio/SeqUtils/MeltingTemp.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqUtils copying build/lib.linux-x86_64-cpython-314/Bio/SeqUtils/ProtParam.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqUtils copying build/lib.linux-x86_64-cpython-314/Bio/SeqUtils/ProtParamData.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqUtils copying build/lib.linux-x86_64-cpython-314/Bio/SeqUtils/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqUtils copying build/lib.linux-x86_64-cpython-314/Bio/SeqUtils/lcc.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqUtils creating build/bdist.linux-x86_64/wheel/Bio/SeqIO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/_twoBitIO.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/_twoBitIO.c -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/AbiIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/AceIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/FastaIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/GckIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/GfaIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/IgIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/InsdcIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/Interfaces.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/NibIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/PdbIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/PhdIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/PirIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/QualityIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/SeqXmlIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/SffIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/SnapGeneIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/SwissIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/TabIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/TwoBitIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/UniprotIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/XdnaIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/_index.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/InterproscanIO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InterproscanIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/InterproscanIO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/InterproscanIO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/ExonerateIO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/ExonerateIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/ExonerateIO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/ExonerateIO/_base.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/ExonerateIO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/ExonerateIO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/ExonerateIO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/ExonerateIO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/InfernalIO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InfernalIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/InfernalIO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InfernalIO/_base.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/InfernalIO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InfernalIO/infernal_tab.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/InfernalIO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InfernalIO/infernal_text.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/InfernalIO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/HmmerIO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HmmerIO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO/_base.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HmmerIO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HmmerIO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HmmerIO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HmmerIO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HmmerIO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/HHsuiteIO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HHsuiteIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HHsuiteIO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HHsuiteIO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/BlastIO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/BlastIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/BlastIO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/BlastIO/blast_tab.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/BlastIO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/BlastIO/blast_xml.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/BlastIO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/_model copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_model/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/_model copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_model/_base.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/_model copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_model/hit.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/_model copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_model/hsp.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/_model copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_model/query.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/_model copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/BlatIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/FastaIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_index.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_utils.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO creating build/bdist.linux-x86_64/wheel/Bio/SCOP copying build/lib.linux-x86_64-cpython-314/Bio/SCOP/Cla.py -> build/bdist.linux-x86_64/wheel/./Bio/SCOP copying build/lib.linux-x86_64-cpython-314/Bio/SCOP/Des.py -> build/bdist.linux-x86_64/wheel/./Bio/SCOP copying build/lib.linux-x86_64-cpython-314/Bio/SCOP/Dom.py -> build/bdist.linux-x86_64/wheel/./Bio/SCOP copying build/lib.linux-x86_64-cpython-314/Bio/SCOP/Hie.py -> build/bdist.linux-x86_64/wheel/./Bio/SCOP copying build/lib.linux-x86_64-cpython-314/Bio/SCOP/Raf.py -> build/bdist.linux-x86_64/wheel/./Bio/SCOP copying build/lib.linux-x86_64-cpython-314/Bio/SCOP/Residues.py -> build/bdist.linux-x86_64/wheel/./Bio/SCOP copying build/lib.linux-x86_64-cpython-314/Bio/SCOP/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SCOP creating build/bdist.linux-x86_64/wheel/Bio/Restriction copying build/lib.linux-x86_64-cpython-314/Bio/Restriction/PrintFormat.py -> build/bdist.linux-x86_64/wheel/./Bio/Restriction copying build/lib.linux-x86_64-cpython-314/Bio/Restriction/Restriction.py -> build/bdist.linux-x86_64/wheel/./Bio/Restriction copying build/lib.linux-x86_64-cpython-314/Bio/Restriction/Restriction_Dictionary.py -> build/bdist.linux-x86_64/wheel/./Bio/Restriction copying build/lib.linux-x86_64-cpython-314/Bio/Restriction/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Restriction creating build/bdist.linux-x86_64/wheel/Bio/PopGen creating build/bdist.linux-x86_64/wheel/Bio/PopGen/GenePop copying build/lib.linux-x86_64-cpython-314/Bio/PopGen/GenePop/FileParser.py -> build/bdist.linux-x86_64/wheel/./Bio/PopGen/GenePop copying build/lib.linux-x86_64-cpython-314/Bio/PopGen/GenePop/LargeFileParser.py -> build/bdist.linux-x86_64/wheel/./Bio/PopGen/GenePop copying build/lib.linux-x86_64-cpython-314/Bio/PopGen/GenePop/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/PopGen/GenePop copying build/lib.linux-x86_64-cpython-314/Bio/PopGen/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/PopGen creating build/bdist.linux-x86_64/wheel/Bio/phenotype copying build/lib.linux-x86_64-cpython-314/Bio/phenotype/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/phenotype copying build/lib.linux-x86_64-cpython-314/Bio/phenotype/phen_micro.py -> build/bdist.linux-x86_64/wheel/./Bio/phenotype copying build/lib.linux-x86_64-cpython-314/Bio/phenotype/pm_fitting.py -> build/bdist.linux-x86_64/wheel/./Bio/phenotype creating build/bdist.linux-x86_64/wheel/Bio/Pathway creating build/bdist.linux-x86_64/wheel/Bio/Pathway/Rep copying build/lib.linux-x86_64-cpython-314/Bio/Pathway/Rep/Graph.py -> build/bdist.linux-x86_64/wheel/./Bio/Pathway/Rep copying build/lib.linux-x86_64-cpython-314/Bio/Pathway/Rep/MultiGraph.py -> build/bdist.linux-x86_64/wheel/./Bio/Pathway/Rep copying build/lib.linux-x86_64-cpython-314/Bio/Pathway/Rep/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Pathway/Rep copying build/lib.linux-x86_64-cpython-314/Bio/Pathway/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Pathway creating build/bdist.linux-x86_64/wheel/Bio/NMR copying build/lib.linux-x86_64-cpython-314/Bio/NMR/NOEtools.py -> build/bdist.linux-x86_64/wheel/./Bio/NMR copying build/lib.linux-x86_64-cpython-314/Bio/NMR/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/NMR copying build/lib.linux-x86_64-cpython-314/Bio/NMR/xpktools.py -> build/bdist.linux-x86_64/wheel/./Bio/NMR creating build/bdist.linux-x86_64/wheel/Bio/Nexus copying build/lib.linux-x86_64-cpython-314/Bio/Nexus/cnexus.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./Bio/Nexus copying build/lib.linux-x86_64-cpython-314/Bio/Nexus/cnexus.c -> build/bdist.linux-x86_64/wheel/./Bio/Nexus copying build/lib.linux-x86_64-cpython-314/Bio/Nexus/Nexus.py -> build/bdist.linux-x86_64/wheel/./Bio/Nexus copying build/lib.linux-x86_64-cpython-314/Bio/Nexus/Nodes.py -> build/bdist.linux-x86_64/wheel/./Bio/Nexus copying build/lib.linux-x86_64-cpython-314/Bio/Nexus/StandardData.py -> build/bdist.linux-x86_64/wheel/./Bio/Nexus copying build/lib.linux-x86_64-cpython-314/Bio/Nexus/Trees.py -> build/bdist.linux-x86_64/wheel/./Bio/Nexus copying build/lib.linux-x86_64-cpython-314/Bio/Nexus/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Nexus creating build/bdist.linux-x86_64/wheel/Bio/motifs copying build/lib.linux-x86_64-cpython-314/Bio/motifs/_pwm.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./Bio/motifs copying build/lib.linux-x86_64-cpython-314/Bio/motifs/_pwm.c -> build/bdist.linux-x86_64/wheel/./Bio/motifs creating build/bdist.linux-x86_64/wheel/Bio/motifs/jaspar copying build/lib.linux-x86_64-cpython-314/Bio/motifs/jaspar/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs/jaspar copying build/lib.linux-x86_64-cpython-314/Bio/motifs/jaspar/db.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs/jaspar copying build/lib.linux-x86_64-cpython-314/Bio/motifs/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs copying build/lib.linux-x86_64-cpython-314/Bio/motifs/alignace.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs copying build/lib.linux-x86_64-cpython-314/Bio/motifs/clusterbuster.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs copying build/lib.linux-x86_64-cpython-314/Bio/motifs/mast.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs copying build/lib.linux-x86_64-cpython-314/Bio/motifs/matrix.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs copying build/lib.linux-x86_64-cpython-314/Bio/motifs/meme.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs copying build/lib.linux-x86_64-cpython-314/Bio/motifs/minimal.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs copying build/lib.linux-x86_64-cpython-314/Bio/motifs/pfm.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs copying build/lib.linux-x86_64-cpython-314/Bio/motifs/thresholds.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs copying build/lib.linux-x86_64-cpython-314/Bio/motifs/transfac.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs copying build/lib.linux-x86_64-cpython-314/Bio/motifs/xms.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs creating build/bdist.linux-x86_64/wheel/Bio/Medline copying build/lib.linux-x86_64-cpython-314/Bio/Medline/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Medline creating build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-314/Bio/PDB/_bcif_helper.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-314/Bio/PDB/kdtrees.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-314/Bio/PDB/ccealign.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-314/Bio/PDB/kdtrees.c -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-314/Bio/PDB/ccealignmodule.c -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-314/Bio/PDB/bcifhelpermodule.c -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-314/Bio/PDB/AbstractPropertyMap.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-314/Bio/PDB/Atom.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-314/Bio/PDB/Chain.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-314/Bio/PDB/DSSP.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-314/Bio/PDB/Dice.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-314/Bio/PDB/Entity.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-314/Bio/PDB/FragmentMapper.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-314/Bio/PDB/HSExposure.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-314/Bio/PDB/MMCIF2Dict.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-314/Bio/PDB/MMCIFParser.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-314/Bio/PDB/Model.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-314/Bio/PDB/NACCESS.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-314/Bio/PDB/NeighborSearch.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-314/Bio/PDB/PDBExceptions.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-314/Bio/PDB/PDBIO.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-314/Bio/PDB/PDBList.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-314/Bio/PDB/PDBMLParser.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-314/Bio/PDB/PDBParser.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-314/Bio/PDB/PICIO.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-314/Bio/PDB/PSEA.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-314/Bio/PDB/Polypeptide.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-314/Bio/PDB/Residue.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-314/Bio/PDB/ResidueDepth.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-314/Bio/PDB/SASA.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-314/Bio/PDB/SCADIO.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-314/Bio/PDB/Selection.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-314/Bio/PDB/Structure.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-314/Bio/PDB/StructureAlignment.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-314/Bio/PDB/StructureBuilder.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-314/Bio/PDB/Superimposer.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-314/Bio/PDB/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-314/Bio/PDB/alphafold_db.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-314/Bio/PDB/binary_cif.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-314/Bio/PDB/cealign.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-314/Bio/PDB/ic_data.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-314/Bio/PDB/ic_rebuild.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-314/Bio/PDB/internal_coords.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-314/Bio/PDB/mmcifio.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-314/Bio/PDB/parse_pdb_header.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-314/Bio/PDB/qcprot.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB copying build/lib.linux-x86_64-cpython-314/Bio/PDB/vectors.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB creating build/bdist.linux-x86_64/wheel/Bio/PDB/mmtf copying build/lib.linux-x86_64-cpython-314/Bio/PDB/mmtf/DefaultParser.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB/mmtf copying build/lib.linux-x86_64-cpython-314/Bio/PDB/mmtf/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB/mmtf copying build/lib.linux-x86_64-cpython-314/Bio/PDB/mmtf/mmtfio.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB/mmtf creating build/bdist.linux-x86_64/wheel/Bio/KEGG creating build/bdist.linux-x86_64/wheel/Bio/KEGG/KGML copying build/lib.linux-x86_64-cpython-314/Bio/KEGG/KGML/KGML_parser.py -> build/bdist.linux-x86_64/wheel/./Bio/KEGG/KGML copying build/lib.linux-x86_64-cpython-314/Bio/KEGG/KGML/KGML_pathway.py -> build/bdist.linux-x86_64/wheel/./Bio/KEGG/KGML copying build/lib.linux-x86_64-cpython-314/Bio/KEGG/KGML/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/KEGG/KGML creating build/bdist.linux-x86_64/wheel/Bio/KEGG/Map copying build/lib.linux-x86_64-cpython-314/Bio/KEGG/Map/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/KEGG/Map creating build/bdist.linux-x86_64/wheel/Bio/KEGG/Gene copying build/lib.linux-x86_64-cpython-314/Bio/KEGG/Gene/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/KEGG/Gene creating build/bdist.linux-x86_64/wheel/Bio/KEGG/Enzyme copying build/lib.linux-x86_64-cpython-314/Bio/KEGG/Enzyme/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/KEGG/Enzyme creating build/bdist.linux-x86_64/wheel/Bio/KEGG/Compound copying build/lib.linux-x86_64-cpython-314/Bio/KEGG/Compound/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/KEGG/Compound copying build/lib.linux-x86_64-cpython-314/Bio/KEGG/REST.py -> build/bdist.linux-x86_64/wheel/./Bio/KEGG copying build/lib.linux-x86_64-cpython-314/Bio/KEGG/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/KEGG creating build/bdist.linux-x86_64/wheel/Bio/HMM copying build/lib.linux-x86_64-cpython-314/Bio/HMM/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/HMM creating build/bdist.linux-x86_64/wheel/Bio/Graphics creating build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/_Colors.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/_Diagram.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/_Feature.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/_Graph.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/_Track.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/BasicChromosome.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/ColorSpiral.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/Comparative.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/DisplayRepresentation.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/Distribution.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/KGML_vis.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics creating build/bdist.linux-x86_64/wheel/Bio/Geo copying build/lib.linux-x86_64-cpython-314/Bio/Geo/Record.py -> build/bdist.linux-x86_64/wheel/./Bio/Geo copying build/lib.linux-x86_64-cpython-314/Bio/Geo/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Geo creating build/bdist.linux-x86_64/wheel/Bio/GenBank copying build/lib.linux-x86_64-cpython-314/Bio/GenBank/Record.py -> build/bdist.linux-x86_64/wheel/./Bio/GenBank copying build/lib.linux-x86_64-cpython-314/Bio/GenBank/Scanner.py -> build/bdist.linux-x86_64/wheel/./Bio/GenBank copying build/lib.linux-x86_64-cpython-314/Bio/GenBank/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/GenBank copying build/lib.linux-x86_64-cpython-314/Bio/GenBank/utils.py -> build/bdist.linux-x86_64/wheel/./Bio/GenBank creating build/bdist.linux-x86_64/wheel/Bio/ExPASy copying build/lib.linux-x86_64-cpython-314/Bio/ExPASy/Enzyme.py -> build/bdist.linux-x86_64/wheel/./Bio/ExPASy copying build/lib.linux-x86_64-cpython-314/Bio/ExPASy/Prodoc.py -> build/bdist.linux-x86_64/wheel/./Bio/ExPASy copying build/lib.linux-x86_64-cpython-314/Bio/ExPASy/Prosite.py -> build/bdist.linux-x86_64/wheel/./Bio/ExPASy copying build/lib.linux-x86_64-cpython-314/Bio/ExPASy/ScanProsite.py -> build/bdist.linux-x86_64/wheel/./Bio/ExPASy copying build/lib.linux-x86_64-cpython-314/Bio/ExPASy/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/ExPASy copying build/lib.linux-x86_64-cpython-314/Bio/ExPASy/cellosaurus.py -> build/bdist.linux-x86_64/wheel/./Bio/ExPASy creating build/bdist.linux-x86_64/wheel/Bio/Entrez creating build/bdist.linux-x86_64/wheel/Bio/Entrez/XSDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/XSDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/XSDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/XSDs/IPGReportSet.xsd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/XSDs creating build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/xmlspecchars.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/xhtml-table-1.mod -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/taxon.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/section.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/references.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_190101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_180601.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_180101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_150101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_140101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_130501.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_130101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_120101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_110101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_100301.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_100101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_090101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_080101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_020114.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pmc-1.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/phrase.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/para.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/notat.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/modules.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/mmlextra.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/mmlalias.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/mathmlsetup.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/mathml3.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/mathml3-qname1.mod -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/mathml2.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/math.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/list.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/link.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/journalmeta.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isotech.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isopub.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isonum.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isomscr.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isomopf.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isomfrk.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isolat2.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isolat1.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isogrk4.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isogrk3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isogrk2.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isogrk1.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isodia.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isocyr2.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isocyr1.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isobox.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isoamsr.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isoamso.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isoamsn.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isoamsc.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isoamsb.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isoamsa.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/htmltable.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/format.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/esummary_gene.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/esummary_clinvar.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/esummary-v1.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/esearch.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/epost.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/elink_020122.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/elink.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/einfo.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/egquery.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/eSummary_041029.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/eSpell.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/eSearch_020511.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/ePost_020511.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/eLink_101123.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/eLink_090910.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/eInfo_020511.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/display.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/default-mixes.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/default-classes.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/common.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/chars.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/bookdoc_150101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/bookdoc_140101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/bookdoc_130101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/bookdoc_120101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/bookdoc_110101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/bookdoc_100301.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/backmatter.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/articlemeta.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/archivecustom-modules.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/archivecustom-models.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/archivecustom-mixes.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/archivecustom-classes.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/archivearticle.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/XHTMLtablesetup.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/SP_General.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/SP_General.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/PRF_General.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/PRF_General.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/PIR_General.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/PIR_General.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/PDB_General.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/PDB_General.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/OMSSA.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/OMSSA.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NSE.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NSE.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_all.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Variation.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_TxInit.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Systems.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Submit.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Sequence.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqres.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Rsite.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Remap.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_RNA.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_PubMed.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Pub.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Protein.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Project.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Organism.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Mime.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Medlars.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_General.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Gene.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Cdd.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Blast4.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_BioSource.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Access.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/MMDB_Features.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/MMDB.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/MMDB.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-section1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-related-object1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-references1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-phrase1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-para1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-notat1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-modules1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-math1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-list1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-link1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-funding1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-format1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-display1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-common1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/HomoloGene.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/GenBank_General.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/EMBL_General.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/Parser.py -> build/bdist.linux-x86_64/wheel/./Bio/Entrez copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Entrez creating build/bdist.linux-x86_64/wheel/Bio/Emboss copying build/lib.linux-x86_64-cpython-314/Bio/Emboss/Primer3.py -> build/bdist.linux-x86_64/wheel/./Bio/Emboss copying build/lib.linux-x86_64-cpython-314/Bio/Emboss/PrimerSearch.py -> build/bdist.linux-x86_64/wheel/./Bio/Emboss copying build/lib.linux-x86_64-cpython-314/Bio/Emboss/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Emboss creating build/bdist.linux-x86_64/wheel/Bio/Data copying build/lib.linux-x86_64-cpython-314/Bio/Data/CodonTable.py -> build/bdist.linux-x86_64/wheel/./Bio/Data copying build/lib.linux-x86_64-cpython-314/Bio/Data/IUPACData.py -> build/bdist.linux-x86_64/wheel/./Bio/Data copying build/lib.linux-x86_64-cpython-314/Bio/Data/PDBData.py -> build/bdist.linux-x86_64/wheel/./Bio/Data copying build/lib.linux-x86_64-cpython-314/Bio/Data/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Data creating build/bdist.linux-x86_64/wheel/Bio/Compass copying build/lib.linux-x86_64-cpython-314/Bio/Compass/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Compass creating build/bdist.linux-x86_64/wheel/Bio/codonalign copying build/lib.linux-x86_64-cpython-314/Bio/codonalign/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/codonalign copying build/lib.linux-x86_64-cpython-314/Bio/codonalign/codonalignment.py -> build/bdist.linux-x86_64/wheel/./Bio/codonalign copying build/lib.linux-x86_64-cpython-314/Bio/codonalign/codonseq.py -> build/bdist.linux-x86_64/wheel/./Bio/codonalign creating build/bdist.linux-x86_64/wheel/Bio/Cluster copying build/lib.linux-x86_64-cpython-314/Bio/Cluster/_cluster.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./Bio/Cluster copying build/lib.linux-x86_64-cpython-314/Bio/Cluster/clustermodule.c -> build/bdist.linux-x86_64/wheel/./Bio/Cluster copying build/lib.linux-x86_64-cpython-314/Bio/Cluster/cluster.h -> build/bdist.linux-x86_64/wheel/./Bio/Cluster copying build/lib.linux-x86_64-cpython-314/Bio/Cluster/cluster.c -> build/bdist.linux-x86_64/wheel/./Bio/Cluster copying build/lib.linux-x86_64-cpython-314/Bio/Cluster/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Cluster creating build/bdist.linux-x86_64/wheel/Bio/CAPS copying build/lib.linux-x86_64-cpython-314/Bio/CAPS/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/CAPS creating build/bdist.linux-x86_64/wheel/Bio/Blast copying build/lib.linux-x86_64-cpython-314/Bio/Blast/NCBIWWW.py -> build/bdist.linux-x86_64/wheel/./Bio/Blast copying build/lib.linux-x86_64-cpython-314/Bio/Blast/NCBIXML.py -> build/bdist.linux-x86_64/wheel/./Bio/Blast copying build/lib.linux-x86_64-cpython-314/Bio/Blast/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Blast copying build/lib.linux-x86_64-cpython-314/Bio/Blast/_parser.py -> build/bdist.linux-x86_64/wheel/./Bio/Blast copying build/lib.linux-x86_64-cpython-314/Bio/Blast/_writers.py -> build/bdist.linux-x86_64/wheel/./Bio/Blast creating build/bdist.linux-x86_64/wheel/Bio/Alphabet copying build/lib.linux-x86_64-cpython-314/Bio/Alphabet/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Alphabet creating build/bdist.linux-x86_64/wheel/Bio/AlignIO copying build/lib.linux-x86_64-cpython-314/Bio/AlignIO/ClustalIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO copying build/lib.linux-x86_64-cpython-314/Bio/AlignIO/EmbossIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO copying build/lib.linux-x86_64-cpython-314/Bio/AlignIO/FastaIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO copying build/lib.linux-x86_64-cpython-314/Bio/AlignIO/Interfaces.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO copying build/lib.linux-x86_64-cpython-314/Bio/AlignIO/MafIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO copying build/lib.linux-x86_64-cpython-314/Bio/AlignIO/MauveIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO copying build/lib.linux-x86_64-cpython-314/Bio/AlignIO/MsfIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO copying build/lib.linux-x86_64-cpython-314/Bio/AlignIO/NexusIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO copying build/lib.linux-x86_64-cpython-314/Bio/AlignIO/PhylipIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO copying build/lib.linux-x86_64-cpython-314/Bio/AlignIO/StockholmIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO copying build/lib.linux-x86_64-cpython-314/Bio/AlignIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO creating build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-314/Bio/Align/_pairwisealigner.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-314/Bio/Align/_codonaligner.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-314/Bio/Align/_alignmentcounts.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-314/Bio/Align/_aligncore.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-314/Bio/Align/_pairwisealigner.h -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-314/Bio/Align/_pairwisealigner.c -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-314/Bio/Align/_codonaligner.c -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-314/Bio/Align/_alignmentcounts.c -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-314/Bio/Align/_aligncore.c -> build/bdist.linux-x86_64/wheel/./Bio/Align creating build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/_arraycore.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices creating build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/TRANS -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/STR -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/SCHNEIDER -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/RISLER -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/RAO -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/PAM70 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/PAM30 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/PAM250 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/NUC.4.4 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/MEGABLAST -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/MDM78 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/MCLACHLAN -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/LEVIN -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/JONES -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/JOHNSON -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/HOXD70 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/GONNET1992 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/GENETIC -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/FENG -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/DAYHOFF -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/BLOSUM90 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/BLOSUM80 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/BLOSUM62 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/BLOSUM50 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/BLOSUM45 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/BLASTP -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/BLASTN -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/BENNER74 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/BENNER6 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/BENNER22 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/_arraycore.h -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/_arraycore.c -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices copying build/lib.linux-x86_64-cpython-314/Bio/Align/AlignInfo.py -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-314/Bio/Align/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-314/Bio/Align/a2m.py -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-314/Bio/Align/analysis.py -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-314/Bio/Align/bed.py -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-314/Bio/Align/bigbed.py -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-314/Bio/Align/bigmaf.py -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-314/Bio/Align/bigpsl.py -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-314/Bio/Align/chain.py -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-314/Bio/Align/clustal.py -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-314/Bio/Align/emboss.py -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-314/Bio/Align/exonerate.py -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-314/Bio/Align/fasta.py -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-314/Bio/Align/hhr.py -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-314/Bio/Align/interfaces.py -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-314/Bio/Align/maf.py -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-314/Bio/Align/mauve.py -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-314/Bio/Align/msf.py -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-314/Bio/Align/nexus.py -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-314/Bio/Align/phylip.py -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-314/Bio/Align/psl.py -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-314/Bio/Align/sam.py -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-314/Bio/Align/stockholm.py -> build/bdist.linux-x86_64/wheel/./Bio/Align copying build/lib.linux-x86_64-cpython-314/Bio/Align/tabular.py -> build/bdist.linux-x86_64/wheel/./Bio/Align creating build/bdist.linux-x86_64/wheel/Bio/Affy copying build/lib.linux-x86_64-cpython-314/Bio/Affy/CelFile.py -> build/bdist.linux-x86_64/wheel/./Bio/Affy copying build/lib.linux-x86_64-cpython-314/Bio/Affy/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Affy copying build/lib.linux-x86_64-cpython-314/Bio/File.py -> build/bdist.linux-x86_64/wheel/./Bio copying build/lib.linux-x86_64-cpython-314/Bio/Seq.py -> build/bdist.linux-x86_64/wheel/./Bio copying build/lib.linux-x86_64-cpython-314/Bio/SeqFeature.py -> build/bdist.linux-x86_64/wheel/./Bio copying build/lib.linux-x86_64-cpython-314/Bio/SeqRecord.py -> build/bdist.linux-x86_64/wheel/./Bio copying build/lib.linux-x86_64-cpython-314/Bio/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio copying build/lib.linux-x86_64-cpython-314/Bio/_utils.py -> build/bdist.linux-x86_64/wheel/./Bio copying build/lib.linux-x86_64-cpython-314/Bio/bgzf.py -> build/bdist.linux-x86_64/wheel/./Bio copying build/lib.linux-x86_64-cpython-314/Bio/pairwise2.py -> build/bdist.linux-x86_64/wheel/./Bio running install_egg_info Copying biopython.egg-info to build/bdist.linux-x86_64/wheel/./biopython-1.86-py3.14.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/biopython-1.86.dist-info/WHEEL creating '/builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir/pip-wheel-s_7liuev/.tmp-vudemv4s/biopython-1.86-cp314-cp314-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'Bio/File.py' adding 'Bio/Seq.py' adding 'Bio/SeqFeature.py' adding 'Bio/SeqRecord.py' adding 'Bio/__init__.py' adding 'Bio/_utils.py' adding 'Bio/bgzf.py' adding 'Bio/cpairwise2.cpython-314-x86_64-linux-gnu.so' adding 'Bio/cpairwise2module.c' adding 'Bio/pairwise2.py' adding 'Bio/py.typed' adding 'Bio/Affy/CelFile.py' adding 'Bio/Affy/__init__.py' adding 'Bio/Align/AlignInfo.py' adding 'Bio/Align/__init__.py' adding 'Bio/Align/_aligncore.c' adding 'Bio/Align/_aligncore.cpython-314-x86_64-linux-gnu.so' adding 'Bio/Align/_alignmentcounts.c' adding 'Bio/Align/_alignmentcounts.cpython-314-x86_64-linux-gnu.so' adding 'Bio/Align/_codonaligner.c' adding 'Bio/Align/_codonaligner.cpython-314-x86_64-linux-gnu.so' adding 'Bio/Align/_pairwisealigner.c' adding 'Bio/Align/_pairwisealigner.cpython-314-x86_64-linux-gnu.so' adding 'Bio/Align/_pairwisealigner.h' adding 'Bio/Align/a2m.py' adding 'Bio/Align/analysis.py' adding 'Bio/Align/bed.py' adding 'Bio/Align/bigbed.py' adding 'Bio/Align/bigmaf.py' adding 'Bio/Align/bigpsl.py' adding 'Bio/Align/chain.py' adding 'Bio/Align/clustal.py' adding 'Bio/Align/emboss.py' adding 'Bio/Align/exonerate.py' adding 'Bio/Align/fasta.py' adding 'Bio/Align/hhr.py' adding 'Bio/Align/interfaces.py' adding 'Bio/Align/maf.py' adding 'Bio/Align/mauve.py' adding 'Bio/Align/msf.py' adding 'Bio/Align/nexus.py' adding 'Bio/Align/phylip.py' adding 'Bio/Align/psl.py' adding 'Bio/Align/sam.py' adding 'Bio/Align/stockholm.py' adding 'Bio/Align/tabular.py' adding 'Bio/Align/substitution_matrices/__init__.py' adding 'Bio/Align/substitution_matrices/_arraycore.c' adding 'Bio/Align/substitution_matrices/_arraycore.cpython-314-x86_64-linux-gnu.so' adding 'Bio/Align/substitution_matrices/_arraycore.h' adding 'Bio/Align/substitution_matrices/data/BENNER22' adding 'Bio/Align/substitution_matrices/data/BENNER6' adding 'Bio/Align/substitution_matrices/data/BENNER74' adding 'Bio/Align/substitution_matrices/data/BLASTN' adding 'Bio/Align/substitution_matrices/data/BLASTP' adding 'Bio/Align/substitution_matrices/data/BLOSUM45' adding 'Bio/Align/substitution_matrices/data/BLOSUM50' adding 'Bio/Align/substitution_matrices/data/BLOSUM62' adding 'Bio/Align/substitution_matrices/data/BLOSUM80' adding 'Bio/Align/substitution_matrices/data/BLOSUM90' adding 'Bio/Align/substitution_matrices/data/DAYHOFF' adding 'Bio/Align/substitution_matrices/data/FENG' adding 'Bio/Align/substitution_matrices/data/GENETIC' adding 'Bio/Align/substitution_matrices/data/GONNET1992' adding 'Bio/Align/substitution_matrices/data/HOXD70' adding 'Bio/Align/substitution_matrices/data/JOHNSON' adding 'Bio/Align/substitution_matrices/data/JONES' adding 'Bio/Align/substitution_matrices/data/LEVIN' adding 'Bio/Align/substitution_matrices/data/MCLACHLAN' adding 'Bio/Align/substitution_matrices/data/MDM78' adding 'Bio/Align/substitution_matrices/data/MEGABLAST' adding 'Bio/Align/substitution_matrices/data/NUC.4.4' adding 'Bio/Align/substitution_matrices/data/PAM250' adding 'Bio/Align/substitution_matrices/data/PAM30' adding 'Bio/Align/substitution_matrices/data/PAM70' adding 'Bio/Align/substitution_matrices/data/RAO' adding 'Bio/Align/substitution_matrices/data/RISLER' adding 'Bio/Align/substitution_matrices/data/SCHNEIDER' adding 'Bio/Align/substitution_matrices/data/STR' adding 'Bio/Align/substitution_matrices/data/TRANS' adding 'Bio/AlignIO/ClustalIO.py' adding 'Bio/AlignIO/EmbossIO.py' adding 'Bio/AlignIO/FastaIO.py' adding 'Bio/AlignIO/Interfaces.py' adding 'Bio/AlignIO/MafIO.py' adding 'Bio/AlignIO/MauveIO.py' adding 'Bio/AlignIO/MsfIO.py' adding 'Bio/AlignIO/NexusIO.py' adding 'Bio/AlignIO/PhylipIO.py' adding 'Bio/AlignIO/StockholmIO.py' adding 'Bio/AlignIO/__init__.py' adding 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'Bio/Geo/__init__.py' adding 'Bio/Graphics/BasicChromosome.py' adding 'Bio/Graphics/ColorSpiral.py' adding 'Bio/Graphics/Comparative.py' adding 'Bio/Graphics/DisplayRepresentation.py' adding 'Bio/Graphics/Distribution.py' adding 'Bio/Graphics/KGML_vis.py' adding 'Bio/Graphics/__init__.py' adding 'Bio/Graphics/GenomeDiagram/_AbstractDrawer.py' adding 'Bio/Graphics/GenomeDiagram/_CircularDrawer.py' adding 'Bio/Graphics/GenomeDiagram/_Colors.py' adding 'Bio/Graphics/GenomeDiagram/_CrossLink.py' adding 'Bio/Graphics/GenomeDiagram/_Diagram.py' adding 'Bio/Graphics/GenomeDiagram/_Feature.py' adding 'Bio/Graphics/GenomeDiagram/_FeatureSet.py' adding 'Bio/Graphics/GenomeDiagram/_Graph.py' adding 'Bio/Graphics/GenomeDiagram/_GraphSet.py' adding 'Bio/Graphics/GenomeDiagram/_LinearDrawer.py' adding 'Bio/Graphics/GenomeDiagram/_Track.py' adding 'Bio/Graphics/GenomeDiagram/__init__.py' adding 'Bio/HMM/__init__.py' adding 'Bio/KEGG/REST.py' adding 'Bio/KEGG/__init__.py' adding 'Bio/KEGG/Compound/__init__.py' adding 'Bio/KEGG/Enzyme/__init__.py' adding 'Bio/KEGG/Gene/__init__.py' adding 'Bio/KEGG/KGML/KGML_parser.py' adding 'Bio/KEGG/KGML/KGML_pathway.py' adding 'Bio/KEGG/KGML/__init__.py' adding 'Bio/KEGG/Map/__init__.py' adding 'Bio/Medline/__init__.py' adding 'Bio/NMR/NOEtools.py' adding 'Bio/NMR/__init__.py' adding 'Bio/NMR/xpktools.py' adding 'Bio/Nexus/Nexus.py' adding 'Bio/Nexus/Nodes.py' adding 'Bio/Nexus/StandardData.py' adding 'Bio/Nexus/Trees.py' adding 'Bio/Nexus/__init__.py' adding 'Bio/Nexus/cnexus.c' adding 'Bio/Nexus/cnexus.cpython-314-x86_64-linux-gnu.so' adding 'Bio/PDB/AbstractPropertyMap.py' adding 'Bio/PDB/Atom.py' adding 'Bio/PDB/Chain.py' adding 'Bio/PDB/DSSP.py' adding 'Bio/PDB/Dice.py' adding 'Bio/PDB/Entity.py' adding 'Bio/PDB/FragmentMapper.py' adding 'Bio/PDB/HSExposure.py' adding 'Bio/PDB/MMCIF2Dict.py' adding 'Bio/PDB/MMCIFParser.py' adding 'Bio/PDB/Model.py' adding 'Bio/PDB/NACCESS.py' adding 'Bio/PDB/NeighborSearch.py' adding 'Bio/PDB/PDBExceptions.py' adding 'Bio/PDB/PDBIO.py' adding 'Bio/PDB/PDBList.py' adding 'Bio/PDB/PDBMLParser.py' adding 'Bio/PDB/PDBParser.py' adding 'Bio/PDB/PICIO.py' adding 'Bio/PDB/PSEA.py' adding 'Bio/PDB/Polypeptide.py' adding 'Bio/PDB/Residue.py' adding 'Bio/PDB/ResidueDepth.py' adding 'Bio/PDB/SASA.py' adding 'Bio/PDB/SCADIO.py' adding 'Bio/PDB/Selection.py' adding 'Bio/PDB/Structure.py' adding 'Bio/PDB/StructureAlignment.py' adding 'Bio/PDB/StructureBuilder.py' adding 'Bio/PDB/Superimposer.py' adding 'Bio/PDB/__init__.py' adding 'Bio/PDB/_bcif_helper.cpython-314-x86_64-linux-gnu.so' adding 'Bio/PDB/alphafold_db.py' adding 'Bio/PDB/bcifhelpermodule.c' adding 'Bio/PDB/binary_cif.py' adding 'Bio/PDB/ccealign.cpython-314-x86_64-linux-gnu.so' adding 'Bio/PDB/ccealignmodule.c' adding 'Bio/PDB/cealign.py' adding 'Bio/PDB/ic_data.py' adding 'Bio/PDB/ic_rebuild.py' adding 'Bio/PDB/internal_coords.py' adding 'Bio/PDB/kdtrees.c' adding 'Bio/PDB/kdtrees.cpython-314-x86_64-linux-gnu.so' adding 'Bio/PDB/mmcifio.py' adding 'Bio/PDB/parse_pdb_header.py' adding 'Bio/PDB/qcprot.py' adding 'Bio/PDB/vectors.py' adding 'Bio/PDB/mmtf/DefaultParser.py' adding 'Bio/PDB/mmtf/__init__.py' adding 'Bio/PDB/mmtf/mmtfio.py' adding 'Bio/Pathway/__init__.py' adding 'Bio/Pathway/Rep/Graph.py' adding 'Bio/Pathway/Rep/MultiGraph.py' adding 'Bio/Pathway/Rep/__init__.py' adding 'Bio/Phylo/BaseTree.py' adding 'Bio/Phylo/CDAO.py' adding 'Bio/Phylo/CDAOIO.py' adding 'Bio/Phylo/Consensus.py' adding 'Bio/Phylo/NeXML.py' adding 'Bio/Phylo/NeXMLIO.py' adding 'Bio/Phylo/Newick.py' adding 'Bio/Phylo/NewickIO.py' adding 'Bio/Phylo/NexusIO.py' adding 'Bio/Phylo/PhyloXML.py' adding 'Bio/Phylo/PhyloXMLIO.py' adding 'Bio/Phylo/TreeConstruction.py' adding 'Bio/Phylo/__init__.py' adding 'Bio/Phylo/_cdao_owl.py' adding 'Bio/Phylo/_io.py' adding 'Bio/Phylo/_utils.py' adding 'Bio/Phylo/PAML/__init__.py' adding 'Bio/Phylo/PAML/_paml.py' adding 'Bio/Phylo/PAML/_parse_baseml.py' adding 'Bio/Phylo/PAML/_parse_codeml.py' adding 'Bio/Phylo/PAML/_parse_yn00.py' adding 'Bio/Phylo/PAML/baseml.py' adding 'Bio/Phylo/PAML/chi2.py' adding 'Bio/Phylo/PAML/codeml.py' adding 'Bio/Phylo/PAML/yn00.py' adding 'Bio/PopGen/__init__.py' adding 'Bio/PopGen/GenePop/FileParser.py' adding 'Bio/PopGen/GenePop/LargeFileParser.py' adding 'Bio/PopGen/GenePop/__init__.py' adding 'Bio/Restriction/PrintFormat.py' adding 'Bio/Restriction/Restriction.py' adding 'Bio/Restriction/Restriction_Dictionary.py' adding 'Bio/Restriction/__init__.py' adding 'Bio/SCOP/Cla.py' adding 'Bio/SCOP/Des.py' adding 'Bio/SCOP/Dom.py' adding 'Bio/SCOP/Hie.py' adding 'Bio/SCOP/Raf.py' adding 'Bio/SCOP/Residues.py' adding 'Bio/SCOP/__init__.py' adding 'Bio/SVDSuperimposer/__init__.py' adding 'Bio/SearchIO/BlatIO.py' adding 'Bio/SearchIO/FastaIO.py' adding 'Bio/SearchIO/__init__.py' adding 'Bio/SearchIO/_index.py' adding 'Bio/SearchIO/_utils.py' adding 'Bio/SearchIO/BlastIO/__init__.py' adding 'Bio/SearchIO/BlastIO/blast_tab.py' adding 'Bio/SearchIO/BlastIO/blast_xml.py' adding 'Bio/SearchIO/ExonerateIO/__init__.py' adding 'Bio/SearchIO/ExonerateIO/_base.py' adding 'Bio/SearchIO/ExonerateIO/exonerate_cigar.py' adding 'Bio/SearchIO/ExonerateIO/exonerate_text.py' adding 'Bio/SearchIO/ExonerateIO/exonerate_vulgar.py' adding 'Bio/SearchIO/HHsuiteIO/__init__.py' adding 'Bio/SearchIO/HHsuiteIO/hhsuite2_text.py' adding 'Bio/SearchIO/HmmerIO/__init__.py' adding 'Bio/SearchIO/HmmerIO/_base.py' adding 'Bio/SearchIO/HmmerIO/hmmer2_text.py' adding 'Bio/SearchIO/HmmerIO/hmmer3_domtab.py' adding 'Bio/SearchIO/HmmerIO/hmmer3_tab.py' adding 'Bio/SearchIO/HmmerIO/hmmer3_text.py' adding 'Bio/SearchIO/InfernalIO/__init__.py' adding 'Bio/SearchIO/InfernalIO/_base.py' adding 'Bio/SearchIO/InfernalIO/infernal_tab.py' adding 'Bio/SearchIO/InfernalIO/infernal_text.py' adding 'Bio/SearchIO/InterproscanIO/__init__.py' adding 'Bio/SearchIO/InterproscanIO/interproscan_xml.py' adding 'Bio/SearchIO/_model/__init__.py' adding 'Bio/SearchIO/_model/_base.py' adding 'Bio/SearchIO/_model/hit.py' adding 'Bio/SearchIO/_model/hsp.py' adding 'Bio/SearchIO/_model/query.py' adding 'Bio/SeqIO/AbiIO.py' adding 'Bio/SeqIO/AceIO.py' adding 'Bio/SeqIO/FastaIO.py' adding 'Bio/SeqIO/GckIO.py' adding 'Bio/SeqIO/GfaIO.py' adding 'Bio/SeqIO/IgIO.py' adding 'Bio/SeqIO/InsdcIO.py' adding 'Bio/SeqIO/Interfaces.py' adding 'Bio/SeqIO/NibIO.py' adding 'Bio/SeqIO/PdbIO.py' adding 'Bio/SeqIO/PhdIO.py' adding 'Bio/SeqIO/PirIO.py' adding 'Bio/SeqIO/QualityIO.py' adding 'Bio/SeqIO/SeqXmlIO.py' adding 'Bio/SeqIO/SffIO.py' adding 'Bio/SeqIO/SnapGeneIO.py' adding 'Bio/SeqIO/SwissIO.py' adding 'Bio/SeqIO/TabIO.py' adding 'Bio/SeqIO/TwoBitIO.py' adding 'Bio/SeqIO/UniprotIO.py' adding 'Bio/SeqIO/XdnaIO.py' adding 'Bio/SeqIO/__init__.py' adding 'Bio/SeqIO/_index.py' adding 'Bio/SeqIO/_twoBitIO.c' adding 'Bio/SeqIO/_twoBitIO.cpython-314-x86_64-linux-gnu.so' adding 'Bio/SeqUtils/CheckSum.py' adding 'Bio/SeqUtils/IsoelectricPoint.py' adding 'Bio/SeqUtils/MeltingTemp.py' adding 'Bio/SeqUtils/ProtParam.py' adding 'Bio/SeqUtils/ProtParamData.py' adding 'Bio/SeqUtils/__init__.py' adding 'Bio/SeqUtils/lcc.py' adding 'Bio/Sequencing/Ace.py' adding 'Bio/Sequencing/Phd.py' adding 'Bio/Sequencing/__init__.py' adding 'Bio/SwissProt/KeyWList.py' adding 'Bio/SwissProt/__init__.py' adding 'Bio/TogoWS/__init__.py' adding 'Bio/UniGene/__init__.py' adding 'Bio/UniProt/GOA.py' adding 'Bio/UniProt/__init__.py' adding 'Bio/codonalign/__init__.py' adding 'Bio/codonalign/codonalignment.py' adding 'Bio/codonalign/codonseq.py' adding 'Bio/motifs/__init__.py' adding 'Bio/motifs/_pwm.c' adding 'Bio/motifs/_pwm.cpython-314-x86_64-linux-gnu.so' adding 'Bio/motifs/alignace.py' adding 'Bio/motifs/clusterbuster.py' adding 'Bio/motifs/mast.py' adding 'Bio/motifs/matrix.py' adding 'Bio/motifs/meme.py' adding 'Bio/motifs/minimal.py' adding 'Bio/motifs/pfm.py' adding 'Bio/motifs/thresholds.py' adding 'Bio/motifs/transfac.py' adding 'Bio/motifs/xms.py' adding 'Bio/motifs/jaspar/__init__.py' adding 'Bio/motifs/jaspar/db.py' adding 'Bio/phenotype/__init__.py' adding 'Bio/phenotype/phen_micro.py' adding 'Bio/phenotype/pm_fitting.py' adding 'BioSQL/BioSeq.py' adding 'BioSQL/BioSeqDatabase.py' adding 'BioSQL/DBUtils.py' adding 'BioSQL/Loader.py' adding 'BioSQL/__init__.py' adding 'BioSQL/py.typed' adding 'biopython-1.86.dist-info/licenses/LICENSE' adding 'biopython-1.86.dist-info/licenses/LICENSE.rst' adding 'biopython-1.86.dist-info/METADATA' adding 'biopython-1.86.dist-info/WHEEL' adding 'biopython-1.86.dist-info/top_level.txt' adding 'biopython-1.86.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Building wheel for biopython (pyproject.toml): finished with status 'done' Created wheel for biopython: filename=biopython-1.86-cp314-cp314-linux_x86_64.whl size=3194405 sha256=61ce742fca75c493731771fd7338f61eedcfbbf6e2b75e83a6d7787ece373df6 Stored in directory: /builddir/.cache/pip/wheels/a4/95/18/90b31cfb6348ebc68da0bb2021cd147af5d8c0601f6f7cabe5 Successfully built biopython + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.TKYtkB + umask 022 + cd /builddir/build/BUILD/python-biopython-1.86-build + '[' /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT ++ dirname /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT + mkdir -p /builddir/build/BUILD/python-biopython-1.86-build + mkdir /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd biopython-1.86 ++ ls /builddir/build/BUILD/python-biopython-1.86-build/pyproject-wheeldir/biopython-1.86-cp314-cp314-linux_x86_64.whl ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' ++ xargs basename --multiple + specifier=biopython==1.86 + '[' -z biopython==1.86 ']' + TMPDIR=/builddir/build/BUILD/python-biopython-1.86-build/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/python-biopython-1.86-build/pyproject-wheeldir biopython==1.86 Using pip 25.2 from /usr/lib/python3.14/site-packages/pip (python 3.14) Looking in links: /builddir/build/BUILD/python-biopython-1.86-build/pyproject-wheeldir Processing /builddir/build/BUILD/python-biopython-1.86-build/pyproject-wheeldir/biopython-1.86-cp314-cp314-linux_x86_64.whl Installing collected packages: biopython Successfully installed biopython-1.86 + '[' -d /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/bin ']' + rm -f /builddir/build/BUILD/python-biopython-1.86-build/python-biopython-1.86-1.fc44.x86_64-pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib/python3.14/site-packages ']' + '[' /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib64/python3.14/site-packages '!=' /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib/python3.14/site-packages ']' + '[' -d /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib64/python3.14/site-packages ']' + site_dirs+=("/usr/lib64/python3.14/site-packages") + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT$site_dir/*.dist-info + echo '%ghost %dir /usr/lib64/python3.14/site-packages/biopython-1.86.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib64/python3.14/site-packages/biopython-1.86.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT --record /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib64/python3.14/site-packages/biopython-1.86.dist-info/RECORD --output /builddir/build/BUILD/python-biopython-1.86-build/python-biopython-1.86-1.fc44.x86_64-pyproject-record + rm -fv /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib64/python3.14/site-packages/biopython-1.86.dist-info/RECORD removed '/builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib64/python3.14/site-packages/biopython-1.86.dist-info/RECORD' + rm -fv /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib64/python3.14/site-packages/biopython-1.86.dist-info/REQUESTED removed '/builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib64/python3.14/site-packages/biopython-1.86.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/python-biopython-1.86-build/python-biopython-1.86-1.fc44.x86_64-pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + RPM_FILES_ESCAPE=4.19 + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/python-biopython-1.86-build/python-biopython-1.86-1.fc44.x86_64-pyproject-files --output-modules /builddir/build/BUILD/python-biopython-1.86-build/python-biopython-1.86-1.fc44.x86_64-pyproject-modules --buildroot /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT --sitelib /usr/lib/python3.14/site-packages --sitearch /usr/lib64/python3.14/site-packages --python-version 3.14 --pyproject-record /builddir/build/BUILD/python-biopython-1.86-build/python-biopython-1.86-1.fc44.x86_64-pyproject-record --prefix /usr '*' +auto + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 1.86-1.fc44 --unique-debug-suffix -1.86-1.fc44.x86_64 --unique-debug-src-base python-biopython-1.86-1.fc44.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/python-biopython-1.86-build/biopython-1.86 find-debuginfo: starting Extracting debug info from 13 files DWARF-compressing 13 files sepdebugcrcfix: Updated 13 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/python-biopython-1.86-1.fc44.x86_64 find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + /usr/lib/rpm/redhat/brp-python-rpm-in-distinfo + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib/debug/usr/lib64/python3.14 using python3.14 Bytecompiling .py files below /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib64/python3.14 using python3.14 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-det --brp -j2 /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT 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inodes, 405 modified (214 replaced + 191 rewritten), 0 unsupported format, 0 errors + /usr/bin/linkdupes --brp /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr Scanned 153 directories and 1284 files, considered 1284 files, read 86 files, linked 9 files, 0 errors sum of sizes of linked files: 17638 bytes Reading /builddir/build/BUILD/python-biopython-1.86-build/SPECPARTS/rpm-debuginfo.specpart Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.dUguEf + umask 022 + cd /builddir/build/BUILD/python-biopython-1.86-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd biopython-1.86 ++ cat /builddir/build/BUILD/python-biopython-1.86-build/python-biopython-1.86-1.fc44.x86_64-pyproject-modules + '[' -z $'Bio\nBio.Affy\nBio.Affy.CelFile\nBio.Align\nBio.Align.AlignInfo\nBio.Align.a2m\nBio.Align.analysis\nBio.Align.bed\nBio.Align.bigbed\nBio.Align.bigmaf\nBio.Align.bigpsl\nBio.Align.chain\nBio.Align.clustal\nBio.Align.emboss\nBio.Align.exonerate\nBio.Align.fasta\nBio.Align.hhr\nBio.Align.interfaces\nBio.Align.maf\nBio.Align.mauve\nBio.Align.msf\nBio.Align.nexus\nBio.Align.phylip\nBio.Align.psl\nBio.Align.sam\nBio.Align.stockholm\nBio.Align.substitution_matrices\nBio.Align.tabular\nBio.AlignIO\nBio.AlignIO.ClustalIO\nBio.AlignIO.EmbossIO\nBio.AlignIO.FastaIO\nBio.AlignIO.Interfaces\nBio.AlignIO.MafIO\nBio.AlignIO.MauveIO\nBio.AlignIO.MsfIO\nBio.AlignIO.NexusIO\nBio.AlignIO.PhylipIO\nBio.AlignIO.StockholmIO\nBio.Alphabet\nBio.Blast\nBio.Blast.NCBIWWW\nBio.Blast.NCBIXML\nBio.CAPS\nBio.Cluster\nBio.Compass\nBio.Data\nBio.Data.CodonTable\nBio.Data.IUPACData\nBio.Data.PDBData\nBio.Emboss\nBio.Emboss.Primer3\nBio.Emboss.PrimerSearch\nBio.Entrez\nBio.Entrez.Parser\nBio.ExPASy\nBio.ExPASy.Enzyme\nBio.ExPASy.Prodoc\nBio.ExPASy.Prosite\nBio.ExPASy.ScanProsite\nBio.ExPASy.cellosaurus\nBio.File\nBio.GenBank\nBio.GenBank.Record\nBio.GenBank.Scanner\nBio.GenBank.utils\nBio.Geo\nBio.Geo.Record\nBio.Graphics\nBio.Graphics.BasicChromosome\nBio.Graphics.ColorSpiral\nBio.Graphics.Comparative\nBio.Graphics.DisplayRepresentation\nBio.Graphics.Distribution\nBio.Graphics.GenomeDiagram\nBio.Graphics.KGML_vis\nBio.HMM\nBio.KEGG\nBio.KEGG.Compound\nBio.KEGG.Enzyme\nBio.KEGG.Gene\nBio.KEGG.KGML\nBio.KEGG.KGML.KGML_parser\nBio.KEGG.KGML.KGML_pathway\nBio.KEGG.Map\nBio.KEGG.REST\nBio.Medline\nBio.NMR\nBio.NMR.NOEtools\nBio.NMR.xpktools\nBio.Nexus\nBio.Nexus.Nexus\nBio.Nexus.Nodes\nBio.Nexus.StandardData\nBio.Nexus.Trees\nBio.Nexus.cnexus\nBio.PDB\nBio.PDB.AbstractPropertyMap\nBio.PDB.Atom\nBio.PDB.Chain\nBio.PDB.DSSP\nBio.PDB.Dice\nBio.PDB.Entity\nBio.PDB.FragmentMapper\nBio.PDB.HSExposure\nBio.PDB.MMCIF2Dict\nBio.PDB.MMCIFParser\nBio.PDB.Model\nBio.PDB.NACCESS\nBio.PDB.NeighborSearch\nBio.PDB.PDBExceptions\nBio.PDB.PDBIO\nBio.PDB.PDBList\nBio.PDB.PDBMLParser\nBio.PDB.PDBParser\nBio.PDB.PICIO\nBio.PDB.PSEA\nBio.PDB.Polypeptide\nBio.PDB.Residue\nBio.PDB.ResidueDepth\nBio.PDB.SASA\nBio.PDB.SCADIO\nBio.PDB.Selection\nBio.PDB.Structure\nBio.PDB.StructureAlignment\nBio.PDB.StructureBuilder\nBio.PDB.Superimposer\nBio.PDB.alphafold_db\nBio.PDB.binary_cif\nBio.PDB.ccealign\nBio.PDB.cealign\nBio.PDB.ic_data\nBio.PDB.ic_rebuild\nBio.PDB.internal_coords\nBio.PDB.kdtrees\nBio.PDB.mmcifio\nBio.PDB.mmtf\nBio.PDB.mmtf.DefaultParser\nBio.PDB.mmtf.mmtfio\nBio.PDB.parse_pdb_header\nBio.PDB.qcprot\nBio.PDB.vectors\nBio.Pathway\nBio.Pathway.Rep\nBio.Pathway.Rep.Graph\nBio.Pathway.Rep.MultiGraph\nBio.Phylo\nBio.Phylo.BaseTree\nBio.Phylo.CDAO\nBio.Phylo.CDAOIO\nBio.Phylo.Consensus\nBio.Phylo.NeXML\nBio.Phylo.NeXMLIO\nBio.Phylo.Newick\nBio.Phylo.NewickIO\nBio.Phylo.NexusIO\nBio.Phylo.PAML\nBio.Phylo.PAML.baseml\nBio.Phylo.PAML.chi2\nBio.Phylo.PAML.codeml\nBio.Phylo.PAML.yn00\nBio.Phylo.PhyloXML\nBio.Phylo.PhyloXMLIO\nBio.Phylo.TreeConstruction\nBio.PopGen\nBio.PopGen.GenePop\nBio.PopGen.GenePop.FileParser\nBio.PopGen.GenePop.LargeFileParser\nBio.Restriction\nBio.Restriction.PrintFormat\nBio.Restriction.Restriction\nBio.Restriction.Restriction_Dictionary\nBio.SCOP\nBio.SCOP.Cla\nBio.SCOP.Des\nBio.SCOP.Dom\nBio.SCOP.Hie\nBio.SCOP.Raf\nBio.SCOP.Residues\nBio.SVDSuperimposer\nBio.SearchIO\nBio.SearchIO.BlastIO\nBio.SearchIO.BlastIO.blast_tab\nBio.SearchIO.BlastIO.blast_xml\nBio.SearchIO.BlatIO\nBio.SearchIO.ExonerateIO\nBio.SearchIO.ExonerateIO.exonerate_cigar\nBio.SearchIO.ExonerateIO.exonerate_text\nBio.SearchIO.ExonerateIO.exonerate_vulgar\nBio.SearchIO.FastaIO\nBio.SearchIO.HHsuiteIO\nBio.SearchIO.HHsuiteIO.hhsuite2_text\nBio.SearchIO.HmmerIO\nBio.SearchIO.HmmerIO.hmmer2_text\nBio.SearchIO.HmmerIO.hmmer3_domtab\nBio.SearchIO.HmmerIO.hmmer3_tab\nBio.SearchIO.HmmerIO.hmmer3_text\nBio.SearchIO.InfernalIO\nBio.SearchIO.InfernalIO.infernal_tab\nBio.SearchIO.InfernalIO.infernal_text\nBio.SearchIO.InterproscanIO\nBio.SearchIO.InterproscanIO.interproscan_xml\nBio.Seq\nBio.SeqFeature\nBio.SeqIO\nBio.SeqIO.AbiIO\nBio.SeqIO.AceIO\nBio.SeqIO.FastaIO\nBio.SeqIO.GckIO\nBio.SeqIO.GfaIO\nBio.SeqIO.IgIO\nBio.SeqIO.InsdcIO\nBio.SeqIO.Interfaces\nBio.SeqIO.NibIO\nBio.SeqIO.PdbIO\nBio.SeqIO.PhdIO\nBio.SeqIO.PirIO\nBio.SeqIO.QualityIO\nBio.SeqIO.SeqXmlIO\nBio.SeqIO.SffIO\nBio.SeqIO.SnapGeneIO\nBio.SeqIO.SwissIO\nBio.SeqIO.TabIO\nBio.SeqIO.TwoBitIO\nBio.SeqIO.UniprotIO\nBio.SeqIO.XdnaIO\nBio.SeqRecord\nBio.SeqUtils\nBio.SeqUtils.CheckSum\nBio.SeqUtils.IsoelectricPoint\nBio.SeqUtils.MeltingTemp\nBio.SeqUtils.ProtParam\nBio.SeqUtils.ProtParamData\nBio.SeqUtils.lcc\nBio.Sequencing\nBio.Sequencing.Ace\nBio.Sequencing.Phd\nBio.SwissProt\nBio.SwissProt.KeyWList\nBio.TogoWS\nBio.UniGene\nBio.UniProt\nBio.UniProt.GOA\nBio.bgzf\nBio.codonalign\nBio.codonalign.codonalignment\nBio.codonalign.codonseq\nBio.cpairwise2\nBio.motifs\nBio.motifs.alignace\nBio.motifs.clusterbuster\nBio.motifs.jaspar\nBio.motifs.jaspar.db\nBio.motifs.mast\nBio.motifs.matrix\nBio.motifs.meme\nBio.motifs.minimal\nBio.motifs.pfm\nBio.motifs.thresholds\nBio.motifs.transfac\nBio.motifs.xms\nBio.pairwise2\nBio.phenotype\nBio.phenotype.phen_micro\nBio.phenotype.pm_fitting\nBioSQL\nBioSQL.BioSeq\nBioSQL.BioSeqDatabase\nBioSQL.DBUtils\nBioSQL.Loader' ']' + '[' '!' -f /builddir/build/BUILD/python-biopython-1.86-build/python-biopython-1.86-1.fc44.x86_64-pyproject-modules ']' + PATH=/builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin + PYTHONPATH=/builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib64/python3.14/site-packages:/builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib/python3.14/site-packages + _PYTHONSITE=/builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib64/python3.14/site-packages:/builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT/usr/lib/python3.14/site-packages + PYTHONDONTWRITEBYTECODE=1 + /usr/bin/python3 -sP /usr/lib/rpm/redhat/import_all_modules.py -f /builddir/build/BUILD/python-biopython-1.86-build/python-biopython-1.86-1.fc44.x86_64-pyproject-modules -t Check import: Bio Check import: BioSQL + RPM_EC=0 ++ jobs -p + exit 0 Processing files: python3-biopython-1.86-1.fc44.x86_64 Provides: python-biopython = 1.86-1.fc44 python3-biopython = 1.86-1.fc44 python3-biopython(x86-64) = 1.86-1.fc44 python3.14-biopython = 1.86-1.fc44 python3.14dist(biopython) = 1.86 python3dist(biopython) = 1.86 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) python(abi) = 3.14 python3.14dist(numpy) rtld(GNU_HASH) Processing files: python-biopython-debugsource-1.86-1.fc44.x86_64 Provides: python-biopython-debugsource = 1.86-1.fc44 python-biopython-debugsource(x86-64) = 1.86-1.fc44 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: python3-biopython-debuginfo-1.86-1.fc44.x86_64 Provides: debuginfo(build-id) = 0f2eed287712529a07c2a9211476ffdf25ab7bad debuginfo(build-id) = 14efbe4b58bb78f2ff44c75bc353a8f22f0c43e4 debuginfo(build-id) = 1bfa6bf215319ffb9272d70050192d3607701e45 debuginfo(build-id) = 4cec30393ef4e26df12282dc033931fca5380a2a debuginfo(build-id) = 564533d1d5231e82824191ae1075eebf89df1d73 debuginfo(build-id) = 57da2ae2edcf1d1b92607d1ff8dd2369cb83f53f debuginfo(build-id) = 60755c24c1a3b1b2aff529168e385312fdf99985 debuginfo(build-id) = 620e87e755b1bbd08d83bf60f5a7375626e3ef5b debuginfo(build-id) = ae4f526f6f3bd3565ebc91c88954a7ee33c0e77f debuginfo(build-id) = de7b78e17a94e9e8cf0ae552c29ff7307036857f debuginfo(build-id) = e6e3d0503d89c12bd86802ed244a8ed720b14641 debuginfo(build-id) = f3627423d41d32c6156d38fccda46862971a7c30 debuginfo(build-id) = f6055ed746426aec2b61d36abf51df321019f3da python-biopython-debuginfo = 1.86-1.fc44 python3-biopython-debuginfo = 1.86-1.fc44 python3-biopython-debuginfo(x86-64) = 1.86-1.fc44 python3.14-biopython-debuginfo = 1.86-1.fc44 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: python-biopython-debugsource(x86-64) = 1.86-1.fc44 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/python-biopython-1.86-build/BUILDROOT Wrote: /builddir/build/SRPMS/python-biopython-1.86-1.fc44.src.rpm Wrote: /builddir/build/RPMS/python3-biopython-debuginfo-1.86-1.fc44.x86_64.rpm Wrote: /builddir/build/RPMS/python-biopython-debugsource-1.86-1.fc44.x86_64.rpm Wrote: /builddir/build/RPMS/python3-biopython-1.86-1.fc44.x86_64.rpm Finish: rpmbuild python-biopython-1.86-1.fc44.src.rpm Finish: build phase for python-biopython-1.86-1.fc44.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1761692840.201320/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names INFO: Done(/var/lib/copr-rpmbuild/results/python-biopython-1.86-1.fc44.src.rpm) Config(child) 1 minutes 7 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "python3-biopython-debuginfo", "epoch": null, "version": "1.86", "release": "1.fc44", "arch": "x86_64" }, { "name": "python-biopython-debugsource", "epoch": null, "version": "1.86", "release": "1.fc44", "arch": "x86_64" }, { "name": "python-biopython", "epoch": null, "version": "1.86", "release": "1.fc44", "arch": "src" }, { "name": "python3-biopython", "epoch": null, "version": "1.86", "release": "1.fc44", "arch": "x86_64" } ] } RPMResults finished